Citrus Sinensis ID: 032203

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHccEEEEEEcEEEEEEEEEcHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHEcccccccEEEEEcHHHHHHHccc
Coil and Loop (DISEMBL)
matlyapsilaskpllssrpqltlglrvgsptlrlpsrahsrSILTVRagatdseysskrsssnepretimlpgcdynhwlivmefpkdpaptrEQMIETYLNTLATVLGSMEEAKKNMYAFStttytgfqctvseetsekfkgv
Flexible Loop (DISEMBL)
matlyapsilaskpllssrpqltlglrvgsptlrlpsrahsrsiltvragatdseysskrsssnepretimLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV
Low Complexity Region (SEG)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDseysskrsssNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV
Disordered region (IsUnstruct)
*********************************************************************IMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV***********
Disordered Region (DISOPRED)
**********************************************************************MLPGCDYNHWLIVMEFPK****TREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV
Disordered Region (DISEMBL)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAG****************RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVS**********
Disordered Region (DISPRO)
****************S*RPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGAT**EY*****SSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q38732	230	DAG protein, chloroplasti	N/A	no	0.751	0.473	0.771	2e-41
Q9LKA5	395	Uncharacterized protein A	no	no	0.558	0.205	0.463	5e-17

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 98/114 (85%), Gaps = 5/114 (4%)

Query: 36  PSRAHSRSILTVRAGATDSEYSSKRSSSNEPRE----TIMLPGCDYNHWLIVMEFPKDPA 91
           P ++ S +  TVRA  TD EYSS+R+++N        TIMLPGCDYNHWLIVMEFPKDPA
Sbjct: 42  PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPA 100

Query: 92  PTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV 145
           PTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKG+
Sbjct: 101 PTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGL 154

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.
Antirrhinum majus (taxid: 4151)

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 62  SSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYA 121
           S+  P+ETI+L GCD+ HWL+V+E P+   PTR+++I++Y+ TLA ++GS +EA+  +Y+
Sbjct: 82  SNRPPKETILLDGCDFEHWLVVVEPPQG-EPTRDEIIDSYIKTLAQIVGSEDEARMKIYS 140

Query: 122 FSTTTYTGFQCTVSEETSEKFK 143
            ST  Y  F   VSE+ S K K
Sbjct: 141 VSTRCYYAFGALVSEDLSHKLK 162

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
225461197	229	PREDICTED: DAG protein, chloroplastic is	0.931	0.589	0.768	5e-51
15220382	232	putative plastid developmental protein D	0.834	0.521	0.776	4e-49
21593052	232	DAG protein, putative [Arabidopsis thali	0.834	0.521	0.776	4e-49
255555105	226	DAG protein, chloroplast precursor, puta	0.696	0.446	0.892	1e-46
357446239	221	DAG protein [Medicago truncatula] gi|355	0.986	0.647	0.662	1e-44
388515563	230	unknown [Lotus japonicus]	0.841	0.530	0.738	2e-44
388499642	231	unknown [Lotus japonicus]	0.841	0.528	0.738	2e-44
356554919	222	PREDICTED: DAG protein, chloroplastic [G	0.717	0.468	0.809	3e-44
255625841	221	unknown [Glycine max]	0.717	0.470	0.809	5e-44
449468532	230	PREDICTED: DAG protein, chloroplastic-li	0.937	0.591	0.762	6e-44

>gi|225461197|ref|XP_002283211.1| PREDICTED: DAG protein, chloroplastic isoform 1 [Vitis vinifera] gi|359493924|ref|XP_003634693.1| PREDICTED: DAG protein, chloroplastic isoform 2 [Vitis vinifera]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 114/138 (82%), Gaps = 3/138 (2%)

Query: 9   ILASKPLLSSRPQLTLGLRVGSPTL-RLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPR 67
           I +S P   S  QL   LR  S +  RL SR  S ++  +RA  +D EYSSKRSSSNEPR
Sbjct: 16  ISSSHPNPRSTVQLAFPLRFNSISRPRLTSR--SGAVRPIRAAVSDGEYSSKRSSSNEPR 73

Query: 68  ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTY 127
           ETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTY
Sbjct: 74  ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTY 133

Query: 128 TGFQCTVSEETSEKFKGV 145
           TGFQCTVSEETSEKFKG+
Sbjct: 134 TGFQCTVSEETSEKFKGL 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220382|ref|NP_172610.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|6554182|gb|AAF16628.1|AC011661_6 T23J18.10 [Arabidopsis thaliana] gi|26450103|dbj|BAC42171.1| unknown protein [Arabidopsis thaliana] gi|28827520|gb|AAO50604.1| putative DAG protein [Arabidopsis thaliana] gi|332190614|gb|AEE28735.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 108/125 (86%), Gaps = 4/125 (3%)

Query: 25  GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHW 80
           G+RVG   +P LR  S A SR  +  V+A   DS+YSSKRS+SNE RETIMLPGCDYNHW
Sbjct: 31  GIRVGDSWTPLLRNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query: 81  LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
           LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct: 91  LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query: 141 KFKGV 145
           KFKG+
Sbjct: 151 KFKGL 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593052|gb|AAM65001.1| DAG protein, putative [Arabidopsis thaliana]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 108/125 (86%), Gaps = 4/125 (3%)

Query: 25  GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHW 80
           G+RVG   +P LR  S A SR  +  V+A   DS+YSSKRS+SNE RETIMLPGCDYNHW
Sbjct: 31  GIRVGDSWTPLLRSISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query: 81  LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
           LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct: 91  LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query: 141 KFKGV 145
           KFKG+
Sbjct: 151 KFKGL 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555105|ref|XP_002518590.1| DAG protein, chloroplast precursor, putative [Ricinus communis] gi|223542435|gb|EEF43977.1| DAG protein, chloroplast precursor, putative [Ricinus communis]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/102 (89%), Positives = 96/102 (94%), Gaps = 1/102 (0%)

Query: 44  ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLN 103
           +L  RA ATDS+YS+KRSSSNE RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLN
Sbjct: 48  LLMTRA-ATDSDYSAKRSSSNESRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLN 106

Query: 104 TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV 145
           TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFKG+
Sbjct: 107 TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGL 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446239|ref|XP_003593397.1| DAG protein [Medicago truncatula] gi|355482445|gb|AES63648.1| DAG protein [Medicago truncatula]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 112/145 (77%), Gaps = 2/145 (1%)

Query: 1   MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKR 60
           MAT+ + +I +SK L  + P  T         L + S+  SR+ + ++A   D +YSSKR
Sbjct: 1   MATISSFTI-SSKTLTLNLPYHTKTPNFNFNPLSIKSKPSSRNPIRIQA-VLDEDYSSKR 58

Query: 61  SSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMY 120
           S SNE RETIMLPGCDYNHWLIVMEFPKDPAP+R+QMI+TYL TLATVLGSMEEAKKNMY
Sbjct: 59  SGSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLQTLATVLGSMEEAKKNMY 118

Query: 121 AFSTTTYTGFQCTVSEETSEKFKGV 145
           AFSTTTYTGFQCTV E TSEKFKG+
Sbjct: 119 AFSTTTYTGFQCTVDEATSEKFKGL 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515563|gb|AFK45843.1| unknown [Lotus japonicus]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 104/126 (82%), Gaps = 4/126 (3%)

Query: 20  PQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNH 79
           P L    RV   ++R  +RA  R+   +RA A D +YS+KRSSS+E RETIMLPGCDYNH
Sbjct: 30  PSLNFN-RVAPRSIRAVTRA--RNPTRIRA-ALDEDYSAKRSSSSEQRETIMLPGCDYNH 85

Query: 80  WLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETS 139
           WLIVMEFPKDPAP+REQMIETYL TL+TVLGSMEEAKKNMYAFSTTTYTGFQCTV E TS
Sbjct: 86  WLIVMEFPKDPAPSREQMIETYLFTLSTVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATS 145

Query: 140 EKFKGV 145
           EKFKG+
Sbjct: 146 EKFKGL 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499642|gb|AFK37887.1| unknown [Lotus japonicus]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 104/126 (82%), Gaps = 4/126 (3%)

Query: 20  PQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNH 79
           P L    RV   ++R  +RA  R+   +RA A D +YS+KRSSS+E RETIMLPGCDYNH
Sbjct: 30  PSLNFN-RVAPRSIRAVTRA--RNPTRIRA-ALDEDYSAKRSSSSEQRETIMLPGCDYNH 85

Query: 80  WLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETS 139
           WLIVMEFPKDPAP+REQMIETYL TL+TVLGSMEEAKKNMYAFSTTTYTGFQCTV E TS
Sbjct: 86  WLIVMEFPKDPAPSREQMIETYLFTLSTVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATS 145

Query: 140 EKFKGV 145
           EKFKG+
Sbjct: 146 EKFKGL 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554919|ref|XP_003545788.1| PREDICTED: DAG protein, chloroplastic [Glycine max]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 96/105 (91%), Gaps = 1/105 (0%)

Query: 41  SRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIET 100
           +R+   +RA A D ++S+KRS++NE RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+T
Sbjct: 42  TRNCNRIRA-ALDGDFSAKRSNNNEQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDT 100

Query: 101 YLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV 145
           YL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFKG+
Sbjct: 101 YLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGL 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255625841|gb|ACU13265.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 96/105 (91%), Gaps = 1/105 (0%)

Query: 41  SRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIET 100
           +R+   +RA A D ++S+KRS++NE RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+T
Sbjct: 42  TRNCNRIRA-ALDGDFSAKRSNNNEQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDT 100

Query: 101 YLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV 145
           YL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFKG+
Sbjct: 101 YLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGL 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468532|ref|XP_004151975.1| PREDICTED: DAG protein, chloroplastic-like [Cucumis sativus]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/139 (76%), Positives = 114/139 (82%), Gaps = 3/139 (2%)

Query: 9   ILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHS--RSILTVRAGATDSEYSSKRSSSNEP 66
           I   KP L  R QL   L + S +    +R HS  +S + VRA A DS+YSSKRSSSNE 
Sbjct: 15  IPLQKPSLLQRVQLGHFLHLNSVSQISTARLHSGSQSRVLVRA-ALDSDYSSKRSSSNEQ 73

Query: 67  RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTT 126
           RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTT
Sbjct: 74  RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTT 133

Query: 127 YTGFQCTVSEETSEKFKGV 145
           YTGFQCTVSEETSEKFKG+
Sbjct: 134 YTGFQCTVSEETSEKFKGL 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.834	0.521	0.712	1.9e-42
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.751	0.291	0.567	5.7e-27
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.937	0.557	0.446	1.3e-22
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.986	0.652	0.365	9.2e-20
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.524	0.181	0.551	6e-18
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.517	0.327	0.52	7.5e-18
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.944	0.590	0.387	2e-17
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.965	0.354	0.337	4.8e-17
TAIR|locus:2156344	723	MORF4 "AT5G44780" [Arabidopsis	0.482	0.096	0.549	3.9e-15
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.510	0.385	0.4	2.7e-13

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 89/125 (71%), Positives = 98/125 (78%)

Query:    25 GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDXXXXXXXXXXNEPRETIMLPGCDYNHW 80
             G+RVG   +P LR  S A SR  +  V+A   D          NE RETIMLPGCDYNHW
Sbjct:    31 GIRVGDSWTPLLRNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query:    81 LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
             LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct:    91 LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query:   141 KFKGV 145
             KFKG+
Sbjct:   151 KFKGL 155

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 63/111 (56%), Positives = 71/111 (63%)

Query:    35 LPSRAHSRSILTVRAGATDXXXXXXXXXXNEPRETIMLPGCDYNHWLIVMEFPKDPAPTR 94
             LP+     S     A   D            P E I+  GCDYNHWLI MEFP DP PTR
Sbjct:    50 LPAAGFRSSAAASAAARGDDYGRRDVDEKISPDE-ILFEGCDYNHWLITMEFP-DPKPTR 107

Query:    95 EQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGV 145
             E+MIETYL TLA V+GS EEAKK MYAFSTTTY GFQ  ++EE SEKF+G+
Sbjct:   108 EEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEKFRGL 158

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 63/141 (44%), Positives = 81/141 (57%)

Query:     8 SILASKPLLSSRPQLTLGL--RVGSPTLRL-PSRAHSRSILTVRAGATDXXXXXXXXXXN 64
             S  +S P LSSR +  + L  +V S    L P    +R   T  +G +            
Sbjct:    23 SYSSSFPTLSSRSRFAMPLIEKVSSSRTSLGPCYISTRP-KTSGSGYSPLNDPSPNWSNR 81

Query:    65 EPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFST 124
              P+ETI+L GCDY HWLIVMEF  DP PT E+MI +Y+ TL +VLG  EEAKK +Y+  T
Sbjct:    82 PPKETILLDGCDYEHWLIVMEFT-DPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCT 140

Query:   125 TTYTGFQCTVSEETSEKFKGV 145
             +TYTGF   +SEE S K K +
Sbjct:   141 STYTGFGALISEELSCKVKAL 161

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 53/145 (36%), Positives = 74/145 (51%)

Query:     3 TLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDXXXXXXXXX 62
             T +    L S   L + P++   +  G   L   +R  S      R+G+T          
Sbjct:     8 TRHLTRALLSNVTLMAPPRIPSSVHYGGSRLGCSTRFFSIRCGANRSGSTYSPLNSGSNF 67

Query:    63 XNEPRETI--MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMY 120
              + P   +  + PGCDY HWLIVM+ P     T++QMI+ Y+ TLA V+GS EEAKK +Y
Sbjct:    68 SDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIY 127

Query:   121 AFSTTTYTGFQCTVSEETSEKFKGV 145
               S   Y GF C + EETS K +G+
Sbjct:   128 NVSCERYLGFGCEIDEETSTKLEGL 152

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 6.0e-18, P = 6.0e-18
 Identities = 43/78 (55%), Positives = 56/78 (71%)

Query:    68 ETIMLPGCDYNHWLIVMEFPKDPAP-TREQMIETYLNTLATVLG-SMEEAKKNMYAFSTT 125
             +T++  GCDYNHWLI M+F K+  P + E+M+  Y  T A  LG S+EEAK+ MYA STT
Sbjct:    78 DTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACSTT 137

Query:   126 TYTGFQCTVSEETSEKFK 143
             TY GFQ  ++E+ SEKFK
Sbjct:   138 TYQGFQAIMTEQESEKFK 155

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    71 MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 130
             + PGCDY HWLIVM+ P     T++QMI+ Y+ TLA ++GS EEAKK +Y  S   Y GF
Sbjct:    87 LFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGF 146

Query:   131 QCTVSEETSEKFKGV 145
              C + EETS K +G+
Sbjct:   147 GCEIDEETSNKLEGL 161

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 55/142 (38%), Positives = 73/142 (51%)

Query:     6 APSILASKPLLSSRPQLTLGLRVGS-PTLRLPSRAHSRSILTVRAGATDXXXXXXXXXXN 64
             +PS L S  L+S R   T+   VG  P L   +   +R  +    G+             
Sbjct:    26 SPSPLPSH-LISRRFSPTIFHAVGYIPALTRFTTIRTR--MDRSGGSYSPLKSGSNFSDR 82

Query:    65 EPRETIML-PGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFS 123
              P E   L PGCDY HWLIVME P      ++QMI+ Y+ TLA ++GS EEA+K +Y  S
Sbjct:    83 PPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVS 142

Query:   124 TTTYTGFQCTVSEETSEKFKGV 145
                Y GF C + EETS K +G+
Sbjct:   143 CERYFGFGCEIDEETSNKLEGL 164

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 4.8e-17, P = 4.8e-17
 Identities = 50/148 (33%), Positives = 79/148 (53%)

Query:     1 MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDXXXXXXX 60
             ++ L+  S  +S PL  S P  +L L    P +   S      +++V+  +T        
Sbjct:    18 LSFLFTRSFASSAPLAKS-PASSL-LSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSSLN 75

Query:    61 X-----XXNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEA 115
                       P+ETI+L GCD+ HWL+V+E P    PTR+++I++Y+ TLA ++GS +EA
Sbjct:    76 DPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEA 134

Query:   116 KKNMYAFSTTTYTGFQCTVSEETSEKFK 143
             +  +Y+ ST  Y  F   VSE+ S K K
Sbjct:   135 RMKIYSVSTRCYYAFGALVSEDLSHKLK 162

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2156344 MORF4 "AT5G44780" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 39/71 (54%), Positives = 49/71 (69%)

Query:    74 GCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLG-SMEEAKKNMYAFSTTTYTGFQC 132
             GCD+NHWLI M FPKD  P+RE+MI  +  T A  L  S+EEAKK +YA  TT+Y GFQ 
Sbjct:    79 GCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQA 138

Query:   133 TVSEETSEKFK 143
             T++    EKF+
Sbjct:   139 TMTIGEVEKFR 149

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 30/75 (40%), Positives = 50/75 (66%)

Query:    71 MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 130
             ++ GCDY HWL++M+ P +  PTR  ++++++ TLA  LGS EEAK+++Y+ ST  Y  F
Sbjct:    48 LVEGCDYKHWLVLMK-PPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAF 106

Query:   131 QCTVSEETSEKFKGV 145
              C + E  + K + +
Sbjct:   107 GCRIHEPLTYKIRSL 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	91.4

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=91.40  E-value=0.28  Score=32.08  Aligned_cols=61  Identities=20%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             eEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCH----HHHhcc-cceeeecceeeeeeeeCHHHHhhhhCC
Q 032203           80 WLIVMEFPKDPAPTREQMIETYLNTLATVLGSM----EEAKKN-MYAFSTTTYTGFQCTVSEETSEKFKGV  145 (145)
Q Consensus        80 WLVvMe~P~~~~psr~emId~Yv~TLAkVLGSE----EEAKkk-IYsvSt~tyfGF~c~I~EE~S~klk~l  145 (145)
                      .+|+|+.+.    +.++..+...+-++..+.+-    ...+-+ +|.+.. .--||.+.++++..++|+..
T Consensus         2 YIV~~k~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~Gfs~~l~~~~i~~L~~~   67 (82)
T PF05922_consen    2 YIVVFKDDA----SAASSFSSHKSWQASILKSALKSASSINAKVLYSYDN-AFNGFSAKLSEEEIEKLRKD   67 (82)
T ss_dssp             EEEEE-TTS----THHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESS-TSSEEEEEE-HHHHHHHHTS
T ss_pred             EEEEECCCC----CcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEee-eEEEEEEEeCHHHHHHHHcC
Confidence            478888663    33334556666666555432    122333 676766 78999999999999999863

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	91.23

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=91.23  E-value=0.26  Score=35.02  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHhcc-cceeeecceeeeeeeeCHHHHhhhhC
Q 032203           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKN-MYAFSTTTYTGFQCTVSEETSEKFKG  144 (145)
Q Consensus        78 ~HWLVvMe~P~~~~psr~emId~Yv~TLAkVLGSEEEAKkk-IYsvSt~tyfGF~c~I~EE~S~klk~  144 (145)
                      +.|+|+|+..    ++ .+.++.+.+.|+.++++ +.+.-+ +|.+. ..--||.+.++|++.++|+.
T Consensus        38 ~~YIV~lk~~----~~-~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~-~~~~GFaa~Lt~~~~~~L~~   98 (114)
T 2w2n_P           38 GTYVVVLKEE----TH-LSQSERTARRLQAQAAR-RGYLTKILHVFH-GLLPGFLVKMSGDLLELALK   98 (114)
T ss_dssp             EEEEEEECTT----CC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEEC-SSSSEEEEECCGGGHHHHHT
T ss_pred             CcEEEEECCC----CC-HHHHHHHHHHHHHHhhh-cccCCceEEEec-ccceEEEEEcCHHHHHHHHc
Confidence            4699999742    22 34566778888888764 223334 56664 46789999999999999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00