BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032204
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 95/128 (74%), Gaps = 15/128 (11%)
Query: 1 MAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRE 60
MAAA QSLS + QA +YA PE GSSS+ + KI + R T TE+R+VNR
Sbjct: 51 MAAALQSLSRPNF---QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNR-- 100
Query: 61 SPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLML 120
PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLML
Sbjct: 101 -----PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLML 155
Query: 121 EANNQPKL 128
E+N Q K+
Sbjct: 156 ESNKQAKI 163
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 36 CNNKISAMRTPTNKATEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNP 93
C + AM+ P K ++ + +P S PEKRQRVPSAYN+FIK+EIQRIKA NP
Sbjct: 128 CASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
Query: 94 DISHREAFSTAAKNWAHFPHIHFGLM 119
DISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 188 DISHREAFSAAAKNWAHFPHIHFGLM 213
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 36 CNNKISAMRTPTNKATEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNP 93
C + AM+ P K ++ + +P S PEKRQRVPSAYN+FIK+EIQRIKA NP
Sbjct: 128 CASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
Query: 94 DISHREAFSTAAKNWAHFPHIHFGLM 119
DISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 188 DISHREAFSAAAKNWAHFPHIHFGLM 213
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQP 126
PEKRQRVPSAYN+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N +
Sbjct: 109 PEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKG 168
Query: 127 KLDDAS 132
K D S
Sbjct: 169 KQLDQS 174
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 78/116 (67%), Gaps = 8/116 (6%)
Query: 12 DVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERVVNRRESPHS 64
+V QAP+ ASP S+S C N A M + NKAT+ + +P +
Sbjct: 104 EVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSA 163
Query: 65 T-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 119
T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 164 NRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLM 219
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 78/116 (67%), Gaps = 8/116 (6%)
Query: 12 DVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERVVNRRESPHS 64
+V QAP+ ASP S+S C N A M + NKAT+ + +P +
Sbjct: 104 EVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSA 163
Query: 65 T-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 119
T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 164 NRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLM 219
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 63 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEA 122
H PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHFGL
Sbjct: 106 HVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHE 165
Query: 123 NNQPKLDDASG 133
+++ KLD+A G
Sbjct: 166 SSK-KLDEAIG 175
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 69/98 (70%), Gaps = 8/98 (8%)
Query: 30 LGSSSKC--NNKISAMRTPTNKATEERVVNRRESPHSTT------PEKRQRVPSAYNQFI 81
+ S++ C NN +A P ++ + + SP + T PEKRQRVPSAYN+FI
Sbjct: 171 MASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFI 230
Query: 82 KEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 119
K+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 231 KDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 268
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 58/68 (85%), Gaps = 2/68 (2%)
Query: 59 RESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 118
+ P + PEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL
Sbjct: 130 KAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 189
Query: 119 MLEANNQP 126
+ +NQP
Sbjct: 190 V--PDNQP 195
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 57/69 (82%)
Query: 63 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEA 122
H+ PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 122 HARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGH 181
Query: 123 NNQPKLDDA 131
KL D
Sbjct: 182 EGGKKLVDV 190
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/52 (94%), Positives = 50/52 (96%)
Query: 68 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 119
EKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 151 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 202
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 48/52 (92%)
Query: 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 118
PEKRQRVPSAYN+FIKEEIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 106 PEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 48/64 (75%)
Query: 52 EERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 111
E+ V+R + PEKRQR PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHF
Sbjct: 117 EDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHF 176
Query: 112 PHIH 115
P H
Sbjct: 177 PPAH 180
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 41/45 (91%)
Query: 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 111
PEK+QR+PSAYN+F+++EIQRIK+ NP+I HREAFS AAKNWA +
Sbjct: 112 PEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 69 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 115
++QR PSAYN F+KEEI+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 115 RKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%)
Query: 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWA 109
PEK+ R+PSAYN+F++EEIQRIKA PDI HREAFS AAKNWA
Sbjct: 102 PEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|A9T6G5|TRM5_PHYPA tRNA (guanine(37)-N1)-methyltransferase OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_141055 PE=3 SV=1
Length = 480
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 26 CRIDLGSSSK-CNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEE 84
C ++ SS+ N ++ R P++K + + P S PE+R+ + ++ +K +
Sbjct: 296 CVGEIASSTLIAENSLNGTRIPSSKENSSSLTEGSDMPSSKKPEERKAKKAKVSEVVKMK 355
Query: 85 IQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 118
I +K W HF H+ L
Sbjct: 356 ISDVKP-----------------WEHFDHVVMNL 372
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 75 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112
++Y +F KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 75 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112
S+Y +F KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 75 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 75 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112
++Y +F KE++ KA NPD + E A+ W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELP 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.124 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,442,983
Number of Sequences: 539616
Number of extensions: 1990271
Number of successful extensions: 5947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 5909
Number of HSP's gapped (non-prelim): 85
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)