Query 032204
Match_columns 145
No_of_seqs 99 out of 122
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 17:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wz6_A HMG-box transcription f 98.6 7.3E-08 2.5E-12 64.5 5.6 50 63-112 1-50 (82)
2 2crj_A SWI/SNF-related matrix- 98.5 3.7E-07 1.3E-11 62.6 6.9 51 63-113 1-51 (92)
3 3nm9_A HMG-D, high mobility gr 98.5 3.2E-07 1.1E-11 60.3 5.9 45 68-112 2-46 (73)
4 2cs1_A PMS1 protein homolog 1; 98.4 5.2E-07 1.8E-11 61.9 6.4 50 64-113 2-51 (92)
5 1hme_A High mobility group pro 98.4 6.5E-07 2.2E-11 58.9 5.9 48 66-113 3-50 (77)
6 2e6o_A HMG box-containing prot 98.3 1E-06 3.5E-11 59.9 6.0 47 66-112 14-60 (87)
7 1wxl_A Single-strand recogniti 98.3 1.3E-06 4.4E-11 57.4 5.9 45 67-111 1-45 (73)
8 3f27_D Transcription factor SO 98.3 1.1E-06 3.9E-11 58.4 5.5 47 66-112 3-49 (83)
9 1hry_A Human SRY; DNA, DNA-bin 98.3 1E-06 3.5E-11 57.8 4.8 46 67-112 2-47 (76)
10 1wgf_A Upstream binding factor 98.3 1.3E-06 4.5E-11 59.8 5.2 47 66-112 17-63 (90)
11 1j46_A SRY, sex-determining re 98.2 1.9E-06 6.6E-11 58.1 5.9 46 67-112 2-47 (85)
12 1ckt_A High mobility group 1 p 98.2 2E-06 6.8E-11 55.6 5.6 44 69-112 1-46 (71)
13 1i11_A Transcription factor SO 98.2 2.7E-06 9.1E-11 56.7 6.0 47 67-113 2-48 (81)
14 2co9_A Thymus high mobility gr 98.2 2.1E-06 7.3E-11 60.1 5.8 48 66-113 14-61 (102)
15 4a3n_A Transcription factor SO 98.2 2.6E-06 8.8E-11 54.8 5.1 44 69-112 2-45 (71)
16 2eqz_A High mobility group pro 98.2 3.3E-06 1.1E-10 57.1 5.8 47 66-112 12-60 (86)
17 1gt0_D Transcription factor SO 98.2 3.1E-06 1.1E-10 56.1 5.6 45 68-112 1-45 (80)
18 1k99_A Upstream binding factor 98.1 3.3E-06 1.1E-10 59.1 5.5 48 66-113 7-54 (99)
19 4euw_A Transcription factor SO 98.1 4.5E-06 1.5E-10 59.1 6.2 47 66-112 26-72 (106)
20 3u2b_C Transcription factor SO 98.0 6.2E-06 2.1E-10 54.2 5.0 44 69-112 2-45 (79)
21 2lef_A LEF-1 HMG, protein (lym 98.0 8.3E-06 2.8E-10 55.0 5.7 44 69-112 2-45 (86)
22 2gzk_A Sex-determining region 98.0 7.5E-06 2.6E-10 60.1 5.8 47 66-112 85-131 (159)
23 1aab_A High mobility group pro 98.0 3.7E-06 1.3E-10 56.2 3.8 47 66-112 4-52 (83)
24 2yrq_A High mobility group pro 98.0 1.1E-05 3.6E-10 60.3 6.1 48 66-113 98-145 (173)
25 2d7l_A WD repeat and HMG-box D 98.0 1.5E-05 5.1E-10 54.7 6.4 47 67-113 3-50 (81)
26 2lhj_A High mobility group pro 97.9 4.2E-06 1.4E-10 57.8 2.7 48 66-113 19-68 (97)
27 1cg7_A Protein (NON histone pr 97.9 2.5E-06 8.6E-11 58.7 0.8 47 66-112 17-63 (93)
28 3tq6_A Transcription factor A, 97.8 1.2E-05 4E-10 63.1 3.9 50 64-113 4-53 (214)
29 2yrq_A High mobility group pro 97.8 4.1E-05 1.4E-09 57.2 6.4 48 66-113 12-61 (173)
30 3tmm_A Transcription factor A, 97.6 5.2E-05 1.8E-09 60.3 4.8 47 66-112 38-84 (238)
31 1l8y_A Upstream binding factor 97.6 0.00011 3.8E-09 52.6 5.6 43 68-111 3-45 (91)
32 2gzk_A Sex-determining region 97.5 0.00016 5.6E-09 52.9 6.0 48 66-113 1-48 (159)
33 3fgh_A Transcription factor A, 97.5 9.1E-05 3.1E-09 47.6 3.5 40 69-112 2-41 (67)
34 1v63_A Nucleolar transcription 97.5 0.0002 6.7E-09 50.4 5.4 48 64-113 3-50 (101)
35 2yuk_A Myeloid/lymphoid or mix 96.9 0.00018 6.3E-09 51.1 0.5 44 67-112 20-63 (90)
36 1v64_A Nucleolar transcription 96.9 0.00095 3.3E-08 47.5 3.9 44 66-113 13-57 (108)
37 3tmm_A Transcription factor A, 96.5 0.00064 2.2E-08 54.0 0.8 42 67-112 144-185 (238)
38 3tq6_A Transcription factor A, 96.4 0.0007 2.4E-08 53.0 0.8 42 67-112 112-153 (214)
39 2cto_A Novel protein; high mob 96.2 0.003 1E-07 44.7 3.1 47 63-111 4-53 (93)
40 3fgx_A Rbstp2171; structural g 28.9 25 0.00087 26.1 1.8 11 73-83 46-56 (114)
41 2vqc_A Hypothetical 13.2 kDa p 20.5 36 0.0012 25.3 1.2 21 73-95 43-63 (118)
42 1t3u_A Conserved hypothetical 20.2 1.3E+02 0.0046 20.2 4.1 32 79-110 33-64 (104)
No 1
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.59 E-value=7.3e-08 Score=64.46 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=47.2
Q ss_pred CCCCCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 63 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 63 ~~~p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
|++++.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 1 g~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (82)
T 1wz6_A 1 GSSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLD 50 (82)
T ss_dssp CCSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 56789999999999999999999999999999999999999999999854
No 2
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.49 E-value=3.7e-07 Score=62.64 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=47.2
Q ss_pred CCCCCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 63 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 63 ~~~p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
|++.|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 1 g~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2crj_A 1 GSSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP 51 (92)
T ss_dssp CCCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCH
Confidence 466788999999999999999999999999999999999999999998643
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.46 E-value=3.2e-07 Score=60.31 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=42.4
Q ss_pred cccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 68 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 68 eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.+++|.+|||..|+++.-..|+++||+++..|+-+.++..|+..+
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999999999865
No 4
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.2e-07 Score=61.90 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=45.7
Q ss_pred CCCCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 64 STTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 64 ~~p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
+..+.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSE 51 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 44678899999999999999999999999999999999999999998543
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.38 E-value=6.5e-07 Score=58.86 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=44.5
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
-|.+++|.+|||..|+++.-..|+++||++++.|..+.++..|+..+.
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 50 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 50 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 567889999999999999999999999999999999999999998543
No 6
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.33 E-value=1e-06 Score=59.88 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=43.7
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.+.+++|.++||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 14 dp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 14 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp CCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 45678899999999999999999999999999999999999999854
No 7
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=98.30 E-value=1.3e-06 Score=57.36 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=42.3
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 111 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~ 111 (145)
|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999999999984
No 8
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=98.29 E-value=1.1e-06 Score=58.40 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=41.1
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.+.+.+|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 46688999999999999999999999999999999999999998754
No 9
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.27 E-value=1e-06 Score=57.81 Aligned_cols=46 Identities=13% Similarity=0.355 Sum_probs=42.6
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
|.+.+|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 5678899999999999999999999999999999999999999854
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.25 E-value=1.3e-06 Score=59.82 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=43.8
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.|.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 17 dp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 63 (90)
T 1wgf_A 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 63 (90)
T ss_dssp CCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 56678899999999999999999999999999999999999999854
No 11
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=98.25 E-value=1.9e-06 Score=58.13 Aligned_cols=46 Identities=13% Similarity=0.355 Sum_probs=43.1
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
|.+++|-+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 47 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999999999999999999999854
No 12
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=98.24 E-value=2e-06 Score=55.60 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=40.7
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 032204 69 KRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 112 (145)
Q Consensus 69 K~~R~PSAYN~FmKeEiqRiKa~nP~isH--KEaFs~AAkNWa~~P 112 (145)
|++|.+|||..|+++.-..|++.||+++. .|.-+.++..|+..+
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 46 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 46 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999976 999999999999754
No 13
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.22 E-value=2.7e-06 Score=56.69 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=42.8
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
+.+.+|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 48 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTN 48 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCS
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCH
Confidence 35678999999999999999999999999999999999999998543
No 14
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=2.1e-06 Score=60.09 Aligned_cols=48 Identities=27% Similarity=0.469 Sum_probs=44.1
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
.|.+++|.+|||..|+++.-..|+++||+++..|+-+.++..|+..+.
T Consensus 14 dp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~ 61 (102)
T 2co9_A 14 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGE 61 (102)
T ss_dssp CCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCH
Confidence 566788999999999999999999999999999999999999998643
No 15
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=98.18 E-value=2.6e-06 Score=54.75 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=39.2
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 69 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 69 K~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
+.+|-+|||..|+++.-..|++.+|++++.|.-+.++..|+..+
T Consensus 2 k~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 56789999999999999999999999999999999999998754
No 16
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=3.3e-06 Score=57.12 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=42.8
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~is--HKEaFs~AAkNWa~~P 112 (145)
.|.+++|.+|||..|+++.-..|+++||+++ ..|.-+.++..|+..+
T Consensus 12 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 12 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 4667889999999999999999999999997 4999999999999854
No 17
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=98.17 E-value=3.1e-06 Score=56.08 Aligned_cols=45 Identities=13% Similarity=0.367 Sum_probs=41.9
Q ss_pred cccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 68 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 68 eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
++++|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 367889999999999999999999999999999999999999854
No 18
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.15 E-value=3.3e-06 Score=59.14 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=44.6
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
.|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 7 dp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~ 54 (99)
T 1k99_A 7 HPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPE 54 (99)
T ss_dssp SSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 577889999999999999999999999999999999999999998543
No 19
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=98.14 E-value=4.5e-06 Score=59.06 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=42.7
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.+.+.+|-++||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 26 ~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 26 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 56788899999999999999999999999999999999999999854
No 20
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=98.05 E-value=6.2e-06 Score=54.22 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=41.0
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 69 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 69 K~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
+.+|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 ~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 2 HIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999754
No 21
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.04 E-value=8.3e-06 Score=54.97 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=41.3
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 69 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 69 K~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
+.+|-+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 45 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALS 45 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999999999754
No 22
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.04 E-value=7.5e-06 Score=60.08 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=43.5
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.|.+++|.+|||..||++.-..|+.+||+++..|..+.++..|+..+
T Consensus 85 dp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 85 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 46678899999999999999999999999999999999999999754
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.03 E-value=3.7e-06 Score=56.20 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=43.1
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isH--KEaFs~AAkNWa~~P 112 (145)
.|.+++|.+|||..|+++.-..|+++||+++. .|.-+.++..|+..+
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 52 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMS 52 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 57788999999999999999999999999975 999999999999854
No 24
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=1.1e-05 Score=60.32 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=44.1
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
.|.+++|.+|||..|+++....|+++||+++..|..+.++..|+..+.
T Consensus 98 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~ 145 (173)
T 2yrq_A 98 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 145 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCG
T ss_pred CCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 466788999999999999999999999999999999999999998543
No 25
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=1.5e-05 Score=54.72 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=43.0
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCCC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDIS-HREAFSTAAKNWAHFPH 113 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~is-HKEaFs~AAkNWa~~P~ 113 (145)
+.+++|.+|||..||++.-..|+.+||+++ ..|.-+.++..|+..+.
T Consensus 3 ~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~ 50 (81)
T 2d7l_A 3 SGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLST 50 (81)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCH
Confidence 456788999999999999999999999998 99999999999998643
No 26
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.94 E-value=4.2e-06 Score=57.84 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=44.2
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~is--HKEaFs~AAkNWa~~P~ 113 (145)
.|.+++|.+|||..|+++.-..|+++||+++ ..|.-+.++..|+..+.
T Consensus 19 dp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 68 (97)
T 2lhj_A 19 DPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68 (97)
T ss_dssp CCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCH
Confidence 5677889999999999999999999999999 99999999999998543
No 27
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.88 E-value=2.5e-06 Score=58.72 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=43.6
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.+.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 17 dp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 56778899999999999999999999999999999999999999753
No 28
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=63.09 Aligned_cols=50 Identities=30% Similarity=0.497 Sum_probs=45.4
Q ss_pred CCCCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 64 STTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 64 ~~p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
++.|.+++|.+|||..||++....|+.+||+++..|+.+.++..|+..+.
T Consensus 4 ~~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~ 53 (214)
T 3tq6_A 4 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 53 (214)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCH
Confidence 34577889999999999999999999999999999999999999998643
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=4.1e-05 Score=57.16 Aligned_cols=48 Identities=21% Similarity=0.411 Sum_probs=43.7
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPD--ISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~--isHKEaFs~AAkNWa~~P~ 113 (145)
.|.+++|.+|||..||++....|+..||+ ++..|+.+.++..|+..+.
T Consensus 12 dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 61 (173)
T 2yrq_A 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 61 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 56788899999999999999999999999 6899999999999987643
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=97.63 E-value=5.2e-05 Score=60.25 Aligned_cols=47 Identities=30% Similarity=0.510 Sum_probs=43.7
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
.|.+++|.+|||..||++....|+.+||+++..|+.+.++..|+..+
T Consensus 38 ~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 38 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 46678899999999999999999999999999999999999999854
No 31
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=97.59 E-value=0.00011 Score=52.55 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=40.6
Q ss_pred cccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 032204 68 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 111 (145)
Q Consensus 68 eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~ 111 (145)
.|++|.+|||+.||.+....+++.+|+ +..|+-+.++..|+..
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 478889999999999999999999999 9999999999999985
No 32
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.53 E-value=0.00016 Score=52.93 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=44.0
Q ss_pred CCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 66 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
++.+.+|-++||-.|++++-.+|+..||+++..|+.+.++..|+..+.
T Consensus 1 g~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (159)
T 2gzk_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCH
T ss_pred CcCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhH
Confidence 367888999999999999999999999999999999999999997643
No 33
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=97.47 E-value=9.1e-05 Score=47.59 Aligned_cols=40 Identities=35% Similarity=0.679 Sum_probs=36.2
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 69 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 69 K~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
+++|.+|||..||++.-..|+..+| .|..+.++..|+..+
T Consensus 2 ~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 2 KPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 5688999999999999999999887 599999999999854
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.46 E-value=0.0002 Score=50.42 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=38.5
Q ss_pred CCCCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 64 STTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 64 ~~p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
++.+.+++|.+|||..||++.+. ...+|+++..|+.+.++..|+..+.
T Consensus 3 s~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 3 SGSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp CCCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 44567888899999999999954 3345568889999999999998543
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.90 E-value=0.00018 Score=51.05 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=36.1
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
|..++|.||||-.||.++-..||.+||+++ +.|..+++.|+..+
T Consensus 20 pnaPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 20 EALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp HHHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 345678999999999999999999999995 34555669998753
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.85 E-value=0.00095 Score=47.50 Aligned_cols=44 Identities=16% Similarity=0.423 Sum_probs=38.3
Q ss_pred CCccc-CCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 032204 66 TPEKR-QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 113 (145)
Q Consensus 66 p~eK~-~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P~ 113 (145)
.+.++ +|.+|||..||++.-..|+ +++..|..+.++..|+..+.
T Consensus 13 d~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 13 FDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp TTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 34566 7899999999999999888 89999999999999998653
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.45 E-value=0.00064 Score=53.95 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=37.5
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
+.+++|.+|||..||++....|+.++|+ |+.+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 4578899999999999999999988876 99999999999854
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.41 E-value=0.0007 Score=52.97 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=37.6
Q ss_pred CcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 032204 67 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 112 (145)
Q Consensus 67 ~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~~P 112 (145)
+.+++|.+|||..||++....|+..+|+ |+.+.++..|+..+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 5678899999999999999999988876 99999999999854
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.23 E-value=0.003 Score=44.69 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=41.2
Q ss_pred CCCCCcccCCCCchhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccC
Q 032204 63 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTA---AKNWAHF 111 (145)
Q Consensus 63 ~~~p~eK~~R~PSAYN~FmKeEiqRiKa~nP~isHKEaFs~A---AkNWa~~ 111 (145)
++..+.+++|.+|||..||++.-.+|+.+ +++..|.=+.+ +..|+..
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 45566788999999999999999999998 78889988888 9999875
No 40
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=28.93 E-value=25 Score=26.14 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=9.4
Q ss_pred CCchhhHHHHH
Q 032204 73 VPSAYNQFIKE 83 (145)
Q Consensus 73 ~PSAYN~FmKe 83 (145)
.|..||+|+++
T Consensus 46 t~~~YnRyi~t 56 (114)
T 3fgx_A 46 KVSDISRFTKE 56 (114)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68899999974
No 41
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=20.51 E-value=36 Score=25.33 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=18.0
Q ss_pred CCchhhHHHHHHHHHHHhhCCCC
Q 032204 73 VPSAYNQFIKEEIQRIKANNPDI 95 (145)
Q Consensus 73 ~PSAYN~FmKeEiqRiKa~nP~i 95 (145)
+||||| ++.-++-|-+.+||-
T Consensus 43 ~~sayn--iqr~l~~ice~hpde 63 (118)
T 2vqc_A 43 VPSAYN--IQRALKAICERHPDE 63 (118)
T ss_dssp HHHHHH--HHHHHHHHHHHCTTT
T ss_pred cchHhH--HHHHHHHHHhcCCch
Confidence 799999 578888999999973
No 42
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=20.16 E-value=1.3e+02 Score=20.24 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhhcc
Q 032204 79 QFIKEEIQRIKANNPDISHREAFSTAAKNWAH 110 (145)
Q Consensus 79 ~FmKeEiqRiKa~nP~isHKEaFs~AAkNWa~ 110 (145)
.|+-+.|+.|+..+|.++-......||-|-++
T Consensus 33 ~~vd~~~~~i~~~~~~~~~~r~~vmaALnlad 64 (104)
T 1t3u_A 33 RYLDGKMREIRSSGKVIGADRVAVMAALNITH 64 (104)
T ss_dssp HHHHHHHHHHHTTTCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999775
Done!