Query 032205
Match_columns 145
No_of_seqs 179 out of 923
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 11:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01100 V_ATP_synt_C vacuola 100.0 1.4E-31 3E-36 196.3 11.4 108 13-121 1-108 (108)
2 KOG0233 Vacuolar H+-ATPase V0 100.0 6.1E-31 1.3E-35 206.1 1.8 131 11-141 39-178 (196)
3 PRK06558 V-type ATP synthase s 100.0 1.2E-28 2.5E-33 191.4 11.8 126 10-138 12-141 (159)
4 PRK06649 V-type ATP synthase s 100.0 5.4E-28 1.2E-32 184.7 10.1 115 14-136 3-126 (143)
5 PRK09621 V-type ATP synthase s 99.9 1.9E-27 4.2E-32 181.5 11.1 111 14-129 4-114 (141)
6 PRK08344 V-type ATP synthase s 99.9 6.5E-28 1.4E-32 186.9 8.1 126 14-139 2-140 (157)
7 PRK06271 V-type ATP synthase s 99.9 9.3E-25 2E-29 176.4 6.7 117 16-140 2-122 (213)
8 PRK14893 V-type ATP synthase s 99.9 1.2E-23 2.5E-28 163.8 11.9 130 10-139 6-141 (161)
9 PRK06271 V-type ATP synthase s 99.9 1.1E-22 2.5E-27 164.3 11.2 120 12-137 70-193 (213)
10 KOG0232 Vacuolar H+-ATPase V0 99.9 7.1E-23 1.5E-27 157.7 7.6 125 7-131 2-126 (156)
11 PF00137 ATP-synt_C: ATP synth 99.7 1.6E-16 3.6E-21 106.6 8.5 66 14-79 1-66 (66)
12 COG0636 AtpE F0F1-type ATP syn 99.6 1.1E-14 2.4E-19 101.5 8.4 68 13-80 7-78 (79)
13 PRK06251 V-type ATP synthase s 99.5 2.9E-14 6.3E-19 103.8 8.3 66 14-79 35-100 (102)
14 PRK13471 F0F1 ATP synthase sub 99.5 5.3E-14 1.1E-18 99.5 8.3 66 14-79 15-84 (85)
15 PRK13469 F0F1 ATP synthase sub 99.5 9.7E-14 2.1E-18 96.8 8.3 66 13-79 9-78 (79)
16 CHL00061 atpH ATP synthase CF0 99.5 1E-13 2.2E-18 97.2 8.3 66 14-79 8-77 (81)
17 PRK06558 V-type ATP synthase s 99.5 8.1E-14 1.8E-18 108.4 8.5 68 13-80 91-158 (159)
18 PRK14893 V-type ATP synthase s 99.5 1.2E-13 2.6E-18 107.6 8.4 66 14-79 91-156 (161)
19 PRK07354 F0F1 ATP synthase sub 99.5 3.2E-13 6.9E-18 94.6 8.2 66 14-79 8-77 (81)
20 PRK06876 F0F1 ATP synthase sub 99.4 6.4E-13 1.4E-17 92.6 8.6 66 14-79 7-76 (78)
21 PRK07558 F0F1 ATP synthase sub 99.4 3.1E-12 6.6E-17 88.4 8.0 65 13-78 5-73 (74)
22 TIGR03322 alt_F1F0_F0_C altern 99.4 3.2E-12 6.9E-17 90.6 8.3 67 13-79 8-78 (86)
23 PRK13468 F0F1 ATP synthase sub 99.4 4E-12 8.8E-17 89.3 8.4 67 13-79 7-77 (82)
24 PRK07159 F0F1 ATP synthase sub 99.3 5.3E-12 1.1E-16 91.7 8.1 65 14-79 31-99 (100)
25 PRK08344 V-type ATP synthase s 99.3 6.7E-12 1.5E-16 97.5 8.6 67 13-79 88-155 (157)
26 PRK08482 F0F1 ATP synthase sub 99.3 8E-12 1.7E-16 91.5 8.3 66 14-79 31-100 (105)
27 PRK09621 V-type ATP synthase s 99.3 9.9E-12 2.1E-16 95.1 8.2 65 12-76 76-140 (141)
28 MTH00222 ATP9 ATP synthase F0 99.3 1.6E-11 3.4E-16 85.4 8.1 66 13-79 7-76 (77)
29 PRK13464 F0F1 ATP synthase sub 99.3 2.1E-11 4.5E-16 88.7 8.3 67 14-80 14-84 (101)
30 PRK13467 F0F1 ATP synthase sub 99.2 4E-11 8.7E-16 81.2 7.2 56 21-76 6-65 (66)
31 PRK13466 F0F1 ATP synthase sub 99.2 5.9E-11 1.3E-15 80.4 6.9 57 20-76 5-65 (66)
32 PRK05880 F0F1 ATP synthase sub 99.2 1.3E-10 2.7E-15 81.6 8.4 66 14-79 8-77 (81)
33 TIGR01260 ATP_synt_c ATP synth 99.2 6.6E-11 1.4E-15 78.2 5.9 53 26-78 1-57 (58)
34 PRK06649 V-type ATP synthase s 99.2 1.6E-10 3.4E-15 88.7 8.1 65 13-77 78-142 (143)
35 PRK07874 F0F1 ATP synthase sub 99.1 2.5E-10 5.4E-15 80.0 7.2 56 20-75 20-79 (80)
36 KOG0232 Vacuolar H+-ATPase V0 98.6 3E-08 6.4E-13 76.9 3.8 71 10-80 82-154 (156)
37 KOG0233 Vacuolar H+-ATPase V0 98.5 1.8E-07 4E-12 74.1 4.8 69 13-81 125-193 (196)
38 COG0636 AtpE F0F1-type ATP syn 97.7 2.8E-05 6.1E-10 54.2 2.7 48 91-138 6-61 (79)
39 PRK07354 F0F1 ATP synthase sub 97.5 9.4E-05 2E-09 51.8 2.8 41 89-129 4-44 (81)
40 PF00137 ATP-synt_C: ATP synth 97.3 0.00012 2.5E-09 49.0 2.0 46 93-138 1-50 (66)
41 PRK13468 F0F1 ATP synthase sub 97.2 0.00026 5.7E-09 49.8 2.8 43 87-129 2-44 (82)
42 TIGR03322 alt_F1F0_F0_C altern 97.2 0.00032 6.9E-09 49.8 2.6 44 87-130 3-46 (86)
43 KOG3025 Mitochondrial F1F0-ATP 97.1 0.0012 2.6E-08 49.6 5.3 65 14-79 68-136 (137)
44 CHL00061 atpH ATP synthase CF0 97.1 0.00048 1E-08 48.3 2.9 41 89-129 4-44 (81)
45 PRK06251 V-type ATP synthase s 97.0 0.00049 1.1E-08 50.3 2.6 50 88-137 30-83 (102)
46 PRK13469 F0F1 ATP synthase sub 96.7 0.0014 3.1E-08 45.6 2.7 40 89-129 6-45 (79)
47 PRK06876 F0F1 ATP synthase sub 95.9 0.007 1.5E-07 42.2 2.8 41 90-130 4-44 (78)
48 PRK05880 F0F1 ATP synthase sub 95.5 0.015 3.2E-07 40.9 3.0 42 89-130 4-45 (81)
49 PRK13471 F0F1 ATP synthase sub 95.4 0.013 2.9E-07 41.4 2.7 41 89-129 11-51 (85)
50 PRK08482 F0F1 ATP synthase sub 94.9 0.024 5.3E-07 41.6 2.7 43 88-130 26-68 (105)
51 TIGR01100 V_ATP_synt_C vacuola 93.9 0.014 3.1E-07 43.0 -0.2 48 93-140 2-53 (108)
52 PRK13464 F0F1 ATP synthase sub 92.9 0.096 2.1E-06 38.3 2.7 40 91-130 12-51 (101)
53 PRK07558 F0F1 ATP synthase sub 92.7 0.089 1.9E-06 36.3 2.2 38 91-129 4-41 (74)
54 PRK07159 F0F1 ATP synthase sub 92.1 0.1 2.2E-06 38.1 1.9 37 93-130 31-67 (100)
55 MTH00222 ATP9 ATP synthase F0 90.7 0.22 4.7E-06 34.7 2.4 41 89-130 4-44 (77)
56 PRK13466 F0F1 ATP synthase sub 86.6 0.41 8.8E-06 32.4 1.5 33 98-130 4-36 (66)
57 PRK07874 F0F1 ATP synthase sub 82.2 0.94 2E-05 31.8 1.8 40 87-130 12-51 (80)
58 PRK13467 F0F1 ATP synthase sub 78.9 1.2 2.6E-05 30.2 1.3 31 100-130 6-36 (66)
59 TIGR02973 nitrate_rd_NapE peri 39.4 90 0.002 19.3 4.3 23 56-78 15-37 (42)
60 TIGR02972 TMAO_torE trimethyla 36.6 93 0.002 19.7 4.1 22 57-78 21-42 (47)
61 PF06796 NapE: Periplasmic nit 35.2 75 0.0016 20.8 3.7 21 57-77 29-49 (56)
62 PRK08124 flagellar motor prote 30.3 1.7E+02 0.0036 24.4 5.9 30 48-80 175-204 (263)
63 PRK08990 flagellar motor prote 30.3 1.5E+02 0.0033 24.6 5.6 29 48-79 171-199 (254)
64 TIGR03818 MotA1 flagellar moto 26.0 2.1E+02 0.0047 24.1 5.9 30 47-79 193-222 (282)
65 PRK06926 flagellar motor prote 25.0 2E+02 0.0043 24.2 5.5 31 47-80 178-208 (271)
66 PF14851 FAM176: FAM176 family 23.5 3.3E+02 0.0072 21.2 6.1 44 60-117 4-47 (153)
67 PRK08456 flagellar motor prote 22.6 2.5E+02 0.0053 23.2 5.5 17 64-80 187-203 (257)
No 1
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.97 E-value=1.4e-31 Score=196.30 Aligned_cols=108 Identities=70% Similarity=1.228 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchHhH
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG 92 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~~~~~~~g 92 (145)
+|+++|++++++|+++||+||++++|.+.+.+.+++||+++|++++++|||+|+|||||++++++.|+++++ ++++++|
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g 79 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG 79 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence 578999999999999999999999998888888888999999999999999999999999999999987642 4889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 032205 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGV 121 (145)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~~aagi 121 (145)
|.+|++||++|+++|+||++||+++|+++
T Consensus 80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g~ 108 (108)
T TIGR01100 80 FIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 99999999999999999999999999874
No 2
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=99.96 E-value=6.1e-31 Score=206.10 Aligned_cols=131 Identities=31% Similarity=0.601 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----
Q 032205 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK----- 85 (145)
Q Consensus 11 ~~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~----- 85 (145)
+++|+-+|++++++||.+|++||+-+.|++.+++.+|.||+.+|+++.++|||+.+|||+|+++++..|+++.++
T Consensus 39 p~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~ 118 (196)
T KOG0233|consen 39 PYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYG 118 (196)
T ss_pred hhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhc
Confidence 456999999999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CcCccceEEEEeccccccc
Q 032205 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR----HPSFVFKIGMLEPMHSSQN 141 (145)
Q Consensus 86 ~~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~----~~~~~~k~li~eif~~~~~ 141 (145)
..++++||++|++|+++|+|+++||+++|++|+++.. ++++|+|++++|+|+|.+-
T Consensus 119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiG 178 (196)
T KOG0233|consen 119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIG 178 (196)
T ss_pred cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHH
Confidence 2478999999999999999999999999999999874 7889999999999999864
No 3
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.96 E-value=1.2e-28 Score=191.45 Aligned_cols=126 Identities=30% Similarity=0.447 Sum_probs=114.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccch
Q 032205 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (145)
Q Consensus 10 ~~~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~~~~~ 89 (145)
.+++|+++|++++++++++||+||+++++++++++++||||.++|.+++++|||+++|||+++++++.+++++ ++++
T Consensus 12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~---~~~~ 88 (159)
T PRK06558 12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP---ELSL 88 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cccH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999854 3789
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCc----CccceEEEEecccc
Q 032205 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHP----SFVFKIGMLEPMHS 138 (145)
Q Consensus 90 ~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~----~~~~k~li~eif~~ 138 (145)
+++|.+|++||++|++++.||++||+++++++++. +.++|++++++|+.
T Consensus 89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E 141 (159)
T PRK06558 89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754 45555677666654
No 4
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.95 E-value=5.4e-28 Score=184.68 Aligned_cols=115 Identities=23% Similarity=0.270 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccc-----chhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY 88 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~-----~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~~~~ 88 (145)
++++|++++++++++||++|++++|+++++++.| |||+|. .++.+.+|.||+|||||+++++.. +++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s 74 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS 74 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence 7899999999999999999999999999999999 999999 999999999999999999999986 267
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccc----eEEEEecc
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVF----KIGMLEPM 136 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~----k~li~eif 136 (145)
++++|.+|++||++|+++++|+++||++|++|+++.+++| |.+++-+|
T Consensus 75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~ 126 (143)
T PRK06649 75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGL 126 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998665555 44444444
No 5
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.95 E-value=1.9e-27 Score=181.50 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchHhHH
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY 93 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~~~~~~~g~ 93 (145)
++++|++++++++++||+||++++|+++++++.|+||.|.|.++.+++||+|+|||||+++++..++++. ..+++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~ 78 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999887642 46899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 94 ~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
..+++||++|++++.||++||+++++++++.++|||
T Consensus 79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe 114 (141)
T PRK09621 79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSE 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 999999999999999999999999999986666664
No 6
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.95 E-value=6.5e-28 Score=186.91 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC--------CCCc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--------PKAK 85 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~--------~~~~ 85 (145)
|+++|++++++++++||+||++++|++++++++||||.++|+++++++||+|+|||||+++++..+.+ ++.+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~ 81 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999877644321 1124
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccc-----eEEEEeccccc
Q 032205 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVF-----KIGMLEPMHSS 139 (145)
Q Consensus 86 ~~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~-----k~li~eif~~~ 139 (145)
++++.+++.++++||++|++++.||++||+++++++++.++|| |++++++|...
T Consensus 82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea 140 (157)
T PRK08344 82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAEL 140 (157)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999987655555 56777766543
No 7
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.91 E-value=9.3e-25 Score=176.38 Aligned_cols=117 Identities=27% Similarity=0.424 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchHhHHHH
Q 032205 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH 95 (145)
Q Consensus 16 ~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~~~~~~~g~~~ 95 (145)
.+|++++++++++|+++|+++++.+++++++||||.++|+++.++++|+++|||+++++++.++.++ .++|.+
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~ 74 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM 74 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999987532 489999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc----CcCccceEEEEecccccc
Q 032205 96 LSSGLACGLAGLSAGMAIGIVGDAGVR----HPSFVFKIGMLEPMHSSQ 140 (145)
Q Consensus 96 ~~aGL~vGl~~l~Sgi~qGi~~aagi~----~~~~~~k~li~eif~~~~ 140 (145)
|++||++|++++ |++.||++|+++++ ++++|.|.+++++|+..+
T Consensus 75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~ 122 (213)
T PRK06271 75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQ 122 (213)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999999999 89999999999986 455666788888888654
No 8
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.91 E-value=1.2e-23 Score=163.76 Aligned_cols=130 Identities=20% Similarity=0.373 Sum_probs=113.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCC--CCccc
Q 032205 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSY 87 (145)
Q Consensus 10 ~~~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~--~~~~~ 87 (145)
.++.+.++|++++++++++|+++|+++++.++++++.||||.++|+++..+++|+++|||+++++++.++.+. +.+++
T Consensus 6 ~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~ 85 (161)
T PRK14893 6 LGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGL 85 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 3456899999999999999999999999999999999999999999999999999999999999999885432 23457
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC----cCccceEEEEeccccc
Q 032205 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRH----PSFVFKIGMLEPMHSS 139 (145)
Q Consensus 88 ~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~----~~~~~k~li~eif~~~ 139 (145)
++.++|.++++||++|++++.|++.||++++++++. ++.|.|+++...|+..
T Consensus 86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et 141 (161)
T PRK14893 86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPET 141 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999864 4555566666666544
No 9
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.89 E-value=1.1e-22 Score=164.25 Aligned_cols=120 Identities=26% Similarity=0.374 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchHh
Q 032205 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD 91 (145)
Q Consensus 12 ~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~~~~~~~ 91 (145)
..|.++|++++++++++ |++++++++++++++.+||||.|+|+++.++|||+++|||+|+++++..+..++ +..+
T Consensus 70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~ 144 (213)
T PRK06271 70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE 144 (213)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence 46899999999999999 789999999999999999999999999999999999999999999999887542 4568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CcCccceEEEEeccc
Q 032205 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVR----HPSFVFKIGMLEPMH 137 (145)
Q Consensus 92 g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~----~~~~~~k~li~eif~ 137 (145)
++.++++||++|++++ ||+.||++++++++ +++.++|+++.+.|.
T Consensus 145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~ 193 (213)
T PRK06271 145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMP 193 (213)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHH
Confidence 9999999999999999 99999999999986 455555665555544
No 10
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=99.88 E-value=7.1e-23 Score=157.66 Aligned_cols=125 Identities=66% Similarity=1.051 Sum_probs=120.1
Q ss_pred CCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 032205 7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS 86 (145)
Q Consensus 7 ~~~~~~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~~~~~~ 86 (145)
+|.|+||+..+|++.+..++++|+++|+.+.|...+....++||+.+|++++++|++..+|||++++.++..++++..+.
T Consensus 2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~ 81 (156)
T KOG0232|consen 2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA 81 (156)
T ss_pred CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999876555
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceEE
Q 032205 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKIG 131 (145)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~l 131 (145)
+++++++.++++|+.+|++++..|+++|+++++++|..++|||.-
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~f 126 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLF 126 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhh
Confidence 899999999999999999999999999999999999999999973
No 11
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.69 E-value=1.6e-16 Score=106.63 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
|+++|++++++++++|+++|+++++++..++.+||||.++|+++..+|+|+++|||+++++++.++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999999999999999999999999999999999998864
No 12
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.58 E-value=1.1e-14 Score=101.55 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchh----hhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe----~~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
-+.+++++++++++++|+++|+|+++.+..++.+|||| +|+|+++..+|+|+++||++++++++.++.
T Consensus 7 ~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 7 GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999 999999999999999999999999998764
No 13
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.54 E-value=2.9e-14 Score=103.78 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
..++|++++++++++|+++|+++++++++++++||||.++|+++..+|+|+++|||+++++++.+.
T Consensus 35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999999999999999999999999999999999999998754
No 14
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.52 E-value=5.3e-14 Score=99.45 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhh----hhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~----k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
..++|++++++++++|+++|+|.++++++++++||||.+. ++++..+++|+++||++++++++.+.
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999765 78999999999999999999998764
No 15
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.50 E-value=9.7e-14 Score=96.79 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhh----hhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~----~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
.+.++|+++++ ++++|+++|+|+++++++++++||||.+ +++++..+|+|+++|||+++++++.+.
T Consensus 9 ~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 9 GMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999 9999999999999999999999999954 456899999999999999999998753
No 16
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.50 E-value=1e-13 Score=97.19 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhh----hhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~----~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
+.+++++++++++++|+++|+|+++++++++.+||||.+ +++++..+|.|+++||++++++++.+.
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999954 559999999999999999999998876
No 17
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.50 E-value=8.1e-14 Score=108.42 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
.+.+++++++++++++++++++|+++++++++.+||||.++|+++..+|+|+++|||||+++++.+++
T Consensus 91 g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~ 158 (159)
T PRK06558 91 GLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGV 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 48899999999999999999999999999999999999999999999999999999999999988765
No 18
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.48 E-value=1.2e-13 Score=107.65 Aligned_cols=66 Identities=23% Similarity=0.427 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
+.+++++++++++++|+++|+++++++++++++||||.|.|+++..+|+|+++||||++++++...
T Consensus 91 ~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~ 156 (161)
T PRK14893 91 LVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVF 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998654
No 19
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.46 E-value=3.2e-13 Score=94.59 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
+.++|++++++++++|+++|+|++++++.++++||||. ++++++..+|+|+.+||++++++++.+.
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999996 5557999999999999999999998776
No 20
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.44 E-value=6.4e-13 Score=92.57 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhh----hhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~----~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
..+++++++++++++|+++|+|+++++++++++||||.. +++++..+++|+++||++++++++.+.
T Consensus 7 ~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 7 LTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999964 589999999999999999999998775
No 21
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.37 E-value=3.1e-12 Score=88.36 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchh----hhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe----~~~k~li~~a~~e~~~IYGlIiaill~~ 78 (145)
...++|+++++ ++++|+++|+|+++.++.++.+|||| +++++++..+|.|+.+||++++++++.+
T Consensus 5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999 99999999999999999999999999 6888999999999999999999999865
No 22
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.37 E-value=3.2e-12 Score=90.56 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
.+.++|++++++++++|+++|+|++..+++++++||||. ++++++..++.|+.+||++++++++.+.
T Consensus 8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999997 5667888999999999999999998776
No 23
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.36 E-value=4e-12 Score=89.30 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhh----hhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~----k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
...++|++++++++++|+++|+|+++.++.++++||||.+. ++++..+|+|+.+||++++++++.+.
T Consensus 7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999654 56778999999999999999998775
No 24
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.34 E-value=5.3e-12 Score=91.66 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
+.++|+++++ ++++|+++|+|+++.++.++++||||. ++++++..+++|+++||++++++++.+.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999 999999999999999999999999996 5568999999999999999999998753
No 25
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.33 E-value=6.7e-12 Score=97.52 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccch-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRP-ELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~P-e~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
-+.+++++++++++++++++++|+++++.+++.+||| |.++|+++..+|+|+++||++++++++..-
T Consensus 88 g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~ 155 (157)
T PRK08344 88 ALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999 999999999999999999999999997653
No 26
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.32 E-value=8e-12 Score=91.46 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhh----hhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~----~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
..++|++++++++++|+++|+|.++.++++++.||||.. +++++..++.|+.+||++++++++.+.
T Consensus 31 ~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 31 YSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999965 458999999999999999999999886
No 27
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.30 E-value=9.9e-12 Score=95.13 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 032205 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 76 (145)
Q Consensus 12 ~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill 76 (145)
..+..+++++++++++++|++++|+++.+++++.+||||.++|+++..++.|+.+||+|++++++
T Consensus 76 ~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 76 SALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778899999999999999999999999999999999999999999999999999999999985
No 28
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.30 E-value=1.6e-11 Score=85.44 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
...++|+++++ ++++|+++|+|.+..+..++.+||||. ++++++..++.|+.+||++++++++.+.
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999 999999999999999999999999995 6779999999999999999999998764
No 29
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.28 E-value=2.1e-11 Score=88.66 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
..+++++++++++++|+++|+|.+.++..++.+||||. ++++++..++.|+.+||++++++++.+..
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~ 84 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999995 67799999999999999999999998874
No 30
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.23 E-value=4e-11 Score=81.18 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=50.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHH
Q 032205 21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (145)
Q Consensus 21 la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill 76 (145)
++.+++++|+++|+|.+.+++.++++||||. ++++++..++.|+.+||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777899999999999999999999995 6679999999999999999999975
No 31
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.20 E-value=5.9e-11 Score=80.36 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=52.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHH
Q 032205 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (145)
Q Consensus 20 ~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill 76 (145)
+++++++++|+++|+|++..+.++++.||||. ++++++..++.|+.+||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999995 6679999999999999999999974
No 32
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.19 E-value=1.3e-10 Score=81.62 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
..++|++++++++++|+++|+|++.++++++++||||. ++++++..++.|++.+|.+++.+++.+.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999994 6779999999999999999888887665
No 33
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.17 E-value=6.6e-11 Score=78.20 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 032205 26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST 78 (145)
Q Consensus 26 s~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~ 78 (145)
+++|+++|+|.++++++++++||||. ++++++..+|.|+.+||++++++++.+
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999997 888999999999999999999999865
No 34
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.15 E-value=1.6e-10 Score=88.72 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 77 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~ 77 (145)
-|.+++++++++++.+.|++.+|+++.+.+.+..||||.|+|.++..+|+|+.+||+|++++++.
T Consensus 78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999999999999999999999999999999999999999999999999998763
No 35
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.12 E-value=2.5e-10 Score=79.96 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=50.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHH
Q 032205 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVI 75 (145)
Q Consensus 20 ~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiail 75 (145)
.++.+++++|+++|+|.+..+++++++||||. ++++++..++.|+.+||+++++|+
T Consensus 20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778999999999999999999999995 667999999999999999999986
No 36
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=98.62 E-value=3e-08 Score=76.90 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=65.7
Q ss_pred chhH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 10 ~~~~--~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
+.++ +-.+++++.+++++.++++.+++.+.+....-.|||+.|..+++..+|.|.+++|||+++..+..+.
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~ 154 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG 154 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4555 7789999999999999999999999999999999999999999999999999999999999887653
No 37
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=98.48 E-value=1.8e-07 Score=74.09 Aligned_cols=69 Identities=19% Similarity=0.433 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN 81 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i~ 81 (145)
-+..+++++.+|++++-+++.+|+.|+++.-+-++||.+|.|.++..+|+.+++++|+|+++++..|.+
T Consensus 125 gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~ 193 (196)
T KOG0233|consen 125 GYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKAS 193 (196)
T ss_pred hHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccccc
Confidence 388999999999999999999999999999999999999999999999999999999999999988754
No 38
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=97.69 E-value=2.8e-05 Score=54.18 Aligned_cols=48 Identities=35% Similarity=0.454 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCcc--------ceEEEEecccc
Q 032205 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFV--------FKIGMLEPMHS 138 (145)
Q Consensus 91 ~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~--------~k~li~eif~~ 138 (145)
+++.++++||++|++++.+|+.||+++++++++.+++ .|+++.+.|..
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E 61 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVE 61 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998654444 44566555543
No 39
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=97.47 E-value=9.4e-05 Score=51.81 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=35.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
+.+++.++++||++|++++.+|++||+++++++++.++||+
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe 44 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPE 44 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 45677899999999999999999999999999876666665
No 40
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=97.35 E-value=0.00012 Score=48.98 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCcc----ceEEEEecccc
Q 032205 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFV----FKIGMLEPMHS 138 (145)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~----~k~li~eif~~ 138 (145)
|.++++|+++|++.+.|+++||+++++++.+.+++ .|.++..+|+.
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E 50 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIE 50 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHH
Confidence 56899999999999999999999999998654444 44455554443
No 41
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=97.23 E-value=0.00026 Score=49.76 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=37.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
.++.++..++++|+++|++.+.+|+.||+++++++.+.++||+
T Consensus 2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe 44 (82)
T PRK13468 2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPD 44 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 3467888999999999999999999999999999876666664
No 42
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=97.15 E-value=0.00032 Score=49.80 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=37.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
.++..++..+++|+++|++.+.+|+.||+++++.+++.++||+.
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~ 46 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDA 46 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 45667889999999999999999999999999998766666653
No 43
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=97.10 E-value=0.0012 Score=49.64 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
-.++|++.+. +...|++.|+|..-.+.+...+|+|++ |.-.++..++.|+.++|-+.++|++++.
T Consensus 68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4688888776 566789999999999999999999985 6668899999999999999999998763
No 44
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=97.08 E-value=0.00048 Score=48.34 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=35.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
...++.++++|+++|++.+.+|+.||+++++.+.+.++||+
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe 44 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPE 44 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 34667899999999999999999999999999987666665
No 45
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=97.02 E-value=0.00049 Score=50.29 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=39.0
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccc----eEEEEeccc
Q 032205 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVF----KIGMLEPMH 137 (145)
Q Consensus 88 ~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~----k~li~eif~ 137 (145)
....+...+++|+++|++++.||+.||+++++++++.+++| |+++...|+
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~ 83 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIG 83 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 45567788999999999999999999999999987555444 455544443
No 46
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=96.69 E-value=0.0014 Score=45.60 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=35.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
+..++.++++||++ ++.+.+|+.||+++++.+.+.++||+
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe 45 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPE 45 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCch
Confidence 46788999999999 99999999999999999987777775
No 47
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=95.93 E-value=0.007 Score=42.21 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 90 ~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
-.+...+++|+.+|++.+.+|+.||++++..+.+.++||+.
T Consensus 4 ~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~ 44 (78)
T PRK06876 4 IMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPEL 44 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 35678899999999999999999999999999877777753
No 48
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=95.46 E-value=0.015 Score=40.89 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
...+..++++|+.+|++.+.+|+.||.+.+..+++.++||+.
T Consensus 4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa 45 (81)
T PRK05880 4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEA 45 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 346678899999999999999999999999999877777764
No 49
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=95.43 E-value=0.013 Score=41.44 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=34.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
...+...+++|+.+|++.+.+|+.||.++++.+.+.++||+
T Consensus 11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe 51 (85)
T PRK13471 11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPE 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChH
Confidence 45667889999999999999999999999999876555554
No 50
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=94.86 E-value=0.024 Score=41.59 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=36.4
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 88 ~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
+...+...+++|+.+|++.+.+|+.||++.+..+.+.++||+.
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~ 68 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGL 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 4567788999999999999999999999999888766666643
No 51
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=93.95 E-value=0.014 Score=43.01 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----cccccCcCccceEEEEecccccc
Q 032205 93 YAHLSSGLACGLAGLSAGMAIGIVG----DAGVRHPSFVFKIGMLEPMHSSQ 140 (145)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~~----aagi~~~~~~~k~li~eif~~~~ 140 (145)
|..+++.++++|+++-|++.++++| +.+++.++++.|-+|..+|+..|
T Consensus 2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~ 53 (108)
T TIGR01100 2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGII 53 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999998 34566799999999999988765
No 52
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=92.90 E-value=0.096 Score=38.29 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 91 ~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
.+...+++|+.+|++.+.+|+.+|.+.+..+.+.++||+.
T Consensus 12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa 51 (101)
T PRK13464 12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPEL 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 4678899999999999999999999999998777777654
No 53
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=92.73 E-value=0.089 Score=36.31 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 91 ~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
.+...+++|+.+ ++.+.+|+.||++.++.+.+.++||+
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe 41 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPS 41 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCch
Confidence 456789999999 99999999999999999987777776
No 54
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=92.09 E-value=0.1 Score=38.09 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 93 ~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
+..+++||.+ ++.+.+|+.||+++++.+.+.++||+.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea 67 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEA 67 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHH
Confidence 5789999999 999999999999999998776666653
No 55
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=90.73 E-value=0.22 Score=34.66 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=34.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
..++...+++|+.+ ++...+|+.||.+.+..+++.++||+.
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~ 44 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSL 44 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhh
Confidence 45677889999999 999999999999999988766666653
No 56
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=86.65 E-value=0.41 Score=32.39 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 98 SGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 98 aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
.++.+|++.+.+|+.||.+.+..+.+.++||+.
T Consensus 4 ~~l~~glaa~GagiG~G~~~~~~~e~vaRqPea 36 (66)
T PRK13466 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEM 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 357889999999999999999988766666653
No 57
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=82.22 E-value=0.94 Score=31.77 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=29.7
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 87 ~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
.+..++...+++|+ +.+.+|+.+|.+....+.+.++||+.
T Consensus 12 ~~~~~~~~~ig~Gl----aaiGagiG~G~~~~~a~e~iARqPEa 51 (80)
T PRK07874 12 ETTFTGLGAVGYGL----AAIGPGIGVGIVVGKALEGMARQPEM 51 (80)
T ss_pred HHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCHhH
Confidence 45667777766665 44679999999999888777776653
No 58
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=78.86 E-value=1.2 Score=30.17 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCcCccceE
Q 032205 100 LACGLAGLSAGMAIGIVGDAGVRHPSFVFKI 130 (145)
Q Consensus 100 L~vGl~~l~Sgi~qGi~~aagi~~~~~~~k~ 130 (145)
+..|++.+.+|+.||.+.+..+++.++||+.
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~ 36 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEM 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 3456677789999999999988777776653
No 59
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=39.39 E-value=90 Score=19.34 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 032205 56 IVPVVMAGVLGIYGLIIAVIIST 78 (145)
Q Consensus 56 li~~a~~e~~~IYGlIiaill~~ 78 (145)
+.++.-...++-||+++.+....
T Consensus 15 l~PiLsV~~V~~YGF~vWm~Q~~ 37 (42)
T TIGR02973 15 IWPVLSVITVGGYGFAVWMYQIL 37 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555566889999999987653
No 60
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=36.57 E-value=93 Score=19.73 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 032205 57 VPVVMAGVLGIYGLIIAVIIST 78 (145)
Q Consensus 57 i~~a~~e~~~IYGlIiaill~~ 78 (145)
.++.-...++-||+++.+....
T Consensus 21 ~PiLsV~~Vg~YGF~vWm~Q~~ 42 (47)
T TIGR02972 21 FPILSVAGIGGYGFIIWMIQAF 42 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556889999999998664
No 61
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=35.20 E-value=75 Score=20.83 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032205 57 VPVVMAGVLGIYGLIIAVIIS 77 (145)
Q Consensus 57 i~~a~~e~~~IYGlIiaill~ 77 (145)
.++.-...++-|||++.+...
T Consensus 29 ~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 29 FPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555688999999999866
No 62
>PRK08124 flagellar motor protein MotA; Validated
Probab=30.33 E-value=1.7e+02 Score=24.36 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=19.0
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 48 RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 48 ~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
+|+..+.. ++-+=..+.||+++|.++...+
T Consensus 175 ~p~~lg~g---Ia~ALitT~yGl~vA~~~~~Pi 204 (263)
T PRK08124 175 DIEKLGHA---ISAAFVATLLGIFTGYVLWHPF 204 (263)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 57664433 2333356789999998875543
No 63
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=30.33 E-value=1.5e+02 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.380 Sum_probs=19.1
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 48 RPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 48 ~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
+|+..+. .++-+=..+.||++++.++...
T Consensus 171 ~p~~lg~---gIa~ALitT~yGl~~An~v~~P 199 (254)
T PRK08990 171 DPKSIGP---AMAVALLTTLYGAVLANMVAIP 199 (254)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6766444 2333335678999999887654
No 64
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=25.99 E-value=2.1e+02 Score=24.09 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=20.1
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 47 MRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 47 ~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
.+|+..+..+ .++|. -++||.+.+.++...
T Consensus 193 ~dp~~lG~~i-A~Alv--~TlyGv~lAn~i~~P 222 (282)
T TIGR03818 193 GPPEVLGVLI-AAALV--GTFLGILLAYGFVGP 222 (282)
T ss_pred CCHHHHHHHH-HHHHH--HHHHHHHHHHHHHHH
Confidence 5888766543 33443 459999999997654
No 65
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=25.02 E-value=2e+02 Score=24.22 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=20.7
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 47 MRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 47 ~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
.+|+..+..+ +.+=.-++||.+.+.++...+
T Consensus 178 ~dp~~IG~~m---AvAlvtTlYGv~~Anlif~Pi 208 (271)
T PRK06926 178 NDPSTLGPNM---AIALLTTLYGTLLANLVFLPI 208 (271)
T ss_pred CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3677655432 333456799999999977643
No 66
>PF14851 FAM176: FAM176 family
Probab=23.51 E-value=3.3e+02 Score=21.15 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcccchHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032205 60 VMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVG 117 (145)
Q Consensus 60 a~~e~~~IYGlIiaill~~~i~~~~~~~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~ 117 (145)
.+...++.|..|-. +.-....+|-.|+|.||.-..+.+-.-+.|
T Consensus 4 llSnsLaaya~I~~--------------~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 4 LLSNSLAAYAHIRD--------------NPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHh--------------ChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45566777777622 124777899999999999999999888888
No 67
>PRK08456 flagellar motor protein MotA; Validated
Probab=22.61 E-value=2.5e+02 Score=23.22 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhcC
Q 032205 64 VLGIYGLIIAVIISTGI 80 (145)
Q Consensus 64 ~~~IYGlIiaill~~~i 80 (145)
.-+.||++++.++...+
T Consensus 187 vtT~yGl~vAn~~~~Pi 203 (257)
T PRK08456 187 TATVTGIMGSYALFGPW 203 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56789999998876643
Done!