Query 032205
Match_columns 145
No_of_seqs 179 out of 923
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 100.0 3.5E-30 1.2E-34 198.3 9.0 135 1-138 1-139 (156)
2 2xqu_A C15_RING, ATP synthase 99.6 2.8E-15 9.6E-20 104.1 9.1 71 10-80 5-79 (82)
3 1wu0_A ATP synthase C chain; A 99.6 1.3E-15 4.6E-20 103.4 7.0 65 14-78 3-71 (72)
4 2x2v_A ATP synthase subunit C; 99.6 2.4E-15 8.2E-20 101.4 7.8 62 16-77 3-68 (69)
5 2wgm_A ATP synthase subunit C, 99.5 4.8E-15 1.6E-19 104.4 5.7 67 13-80 12-82 (89)
6 1a91_A F1FO ATPase subunit C; 99.5 2.4E-14 8.4E-19 98.8 8.4 66 14-79 8-77 (79)
7 2bl2_A V-type sodium ATP synth 99.4 1.6E-13 5.6E-18 105.3 7.4 67 13-79 89-155 (156)
8 2xnd_J ATP synthase lipid-bind 99.4 3.2E-14 1.1E-18 96.6 2.9 63 14-77 5-71 (72)
9 4f4s_A ATP synthase subunit 9, 99.2 5.9E-11 2E-15 81.4 6.8 66 13-79 6-75 (76)
10 2xqu_A C15_RING, ATP synthase 97.7 1.4E-05 4.8E-10 55.0 1.8 42 88-129 4-45 (82)
11 1wu0_A ATP synthase C chain; A 97.5 2.6E-05 8.7E-10 52.4 1.2 38 92-129 2-39 (72)
12 2x2v_A ATP synthase subunit C; 97.2 0.00013 4.4E-09 48.6 1.6 35 95-129 3-37 (69)
13 2wgm_A ATP synthase subunit C, 97.1 9.2E-05 3.2E-09 51.6 0.9 41 88-129 8-48 (89)
14 1a91_A F1FO ATPase subunit C; 96.9 0.00047 1.6E-08 47.1 2.6 36 94-129 9-44 (79)
15 2xnd_J ATP synthase lipid-bind 96.4 0.00022 7.6E-09 47.8 -2.0 38 91-129 3-40 (72)
16 4f4s_A ATP synthase subunit 9, 73.2 0.79 2.7E-05 30.9 0.2 39 89-128 3-41 (76)
17 1jb0_L Photosystem 1 reaction 20.3 2.7E+02 0.0093 20.7 9.1 74 28-106 50-130 (154)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.96 E-value=3.5e-30 Score=198.25 Aligned_cols=135 Identities=26% Similarity=0.456 Sum_probs=119.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 1 MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 1 ~~~~~~~~~~~~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
|++.|....-+|+++++|++++++++++|++||++++|++++++++||||+++|++++++|||+|+|||||+++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l 80 (156)
T 2bl2_A 1 MMDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINL 80 (156)
T ss_dssp CHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555434456789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccchHhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CcCccceEEEEecccc
Q 032205 81 NPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR----HPSFVFKIGMLEPMHS 138 (145)
Q Consensus 81 ~~~~~~~~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~----~~~~~~k~li~eif~~ 138 (145)
++ ++++.+++.++++||++|++++.+|++||++++++++ +|+.+.|+++.+.|..
T Consensus 81 ~~---~~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~E 139 (156)
T 2bl2_A 81 GS---DMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVE 139 (156)
T ss_dssp CT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTH
T ss_pred cc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 75 3778999999999999999999999999999999986 5555666666665554
No 2
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.61 E-value=2.8e-15 Score=104.09 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 10 ~~~~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
....+.++|++++++++++|+++|+|+++++++++.+||||. ++++++..+|+|+++|||+++++++.+..
T Consensus 5 ~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~ 79 (82)
T 2xqu_A 5 LTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334589999999999999999999999999999999999994 66799999999999999999999998764
No 3
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.61 E-value=1.3e-15 Score=103.39 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhh----hhhHHHHHHHHHHHHHHHHHHHHh
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIST 78 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k----~li~~a~~e~~~IYGlIiaill~~ 78 (145)
+.++|++++++++++|+++|+|+++.+++++.+||||.+.| +++..+|+|+++||++++++++.+
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999995555 999999999999999999999864
No 4
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.60 E-value=2.4e-15 Score=101.37 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhh----hhhHHHHHHHHHHHHHHHHHHHH
Q 032205 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIS 77 (145)
Q Consensus 16 ~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k----~li~~a~~e~~~IYGlIiaill~ 77 (145)
++|++++++++++|+++|+|+++++++++.+||||.+.| +++..+|+|+++||++++++++.
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll 68 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999995555 99999999999999999999975
No 5
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.55 E-value=4.8e-15 Score=104.41 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~i 80 (145)
.+.++|+++++ ++++|+++|+|+++.+++++.+||||. ++++++..+|+|+++||++++++++.+..
T Consensus 12 ~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 82 (89)
T 2wgm_A 12 AASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYAN 82 (89)
T ss_dssp HHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999 999999999999999999999999995 99999999999999999999999998875
No 6
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.54 E-value=2.4e-14 Score=98.78 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchh----hhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe----~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
+..++++++++++++|+++|+|+++.+++++.+|||| +++++++..+|+|+++||+|++++++.+.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999999999 56679999999999999999999998764
No 7
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.44 E-value=1.6e-13 Score=105.28 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
.+.++|++++++++++|+++|+|+++++++++.+||||.++|+++..+|+|+++|||+++++++.++
T Consensus 89 g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 89 GLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999999999999999999999999999999999999998764
No 8
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.44 E-value=3.2e-14 Score=96.58 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 032205 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIS 77 (145)
Q Consensus 14 ~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~ 77 (145)
+.++|+++++ ++++|+++|+|+++.+++++.+||||. ++++++..+|+|+++||++++++++.
T Consensus 5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll 71 (72)
T 2xnd_J 5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 71 (72)
T ss_dssp TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999 999999999999999999999999985 55789999999999999999999864
No 9
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.17 E-value=5.9e-11 Score=81.35 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 032205 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (145)
Q Consensus 13 ~~~~lGa~la~gls~iGsa~G~g~aG~a~~~a~~~~Pe~----~~k~li~~a~~e~~~IYGlIiaill~~~ 79 (145)
.-.++|++++. ++.+|+++|+|.+..+.+.+..||||. |+.+++..++.|+.+||+|++++++.+.
T Consensus 6 aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 6 AAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999998 889999999999999999999999984 6678999999999999999999998763
No 10
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=97.66 E-value=1.4e-05 Score=54.99 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=37.7
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 88 ~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
.+.+++.++++|+++|++++.||+.||+++++++++.++|||
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe 45 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPE 45 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 367899999999999999999999999999999986666665
No 11
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=97.50 E-value=2.6e-05 Score=52.45 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 92 g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
++.++++|+++|++++.+|+.||+++++++++.++|||
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe 39 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPE 39 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 46789999999999999999999999999965555444
No 12
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=97.17 E-value=0.00013 Score=48.62 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 95 HLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 95 ~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
++++|+++|++++.||+.||+++++++++.++|||
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe 37 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPE 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 48999999999999999999999999976655555
No 13
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=97.15 E-value=9.2e-05 Score=51.64 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=36.8
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 88 ~~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
++.+++.++++||++ ++++.+|+.||+++++++++.++|||
T Consensus 8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe 48 (89)
T 2wgm_A 8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPE 48 (89)
T ss_dssp HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 467899999999999 99999999999999999987666666
No 14
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=96.91 E-value=0.00047 Score=47.05 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 94 ~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
.++++++.+|++++.+|+.||+++++++++.++||+
T Consensus 9 ~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe 44 (79)
T 1a91_A 9 LYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 569999999999999999999999999976666665
No 15
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=96.36 E-value=0.00022 Score=47.83 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccce
Q 032205 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVFK 129 (145)
Q Consensus 91 ~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~k 129 (145)
+++.++++||++ ++++.+|+.||+++++++++.++||+
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe 40 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS 40 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 456779999999 99999999999999999976666664
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=73.16 E-value=0.79 Score=30.91 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=30.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcCccc
Q 032205 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRHPSFVF 128 (145)
Q Consensus 89 ~~~g~~~~~aGL~vGl~~l~Sgi~qGi~~aagi~~~~~~~ 128 (145)
+.++..+.++|+.+ ++...+|+.||.+..+.+.+.+++|
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP 41 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNP 41 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcCh
Confidence 34566789999997 8888899999999999886544444
No 17
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=20.34 E-value=2.7e+02 Score=20.73 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHhhhcccchhhh------hhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccchHhHHHHHHHHH
Q 032205 28 MGAAYGTAKSGVGVASMGVMRPELV------MKSIVPVVMAGVLGIYGLIIAVIISTGINPK-AKSYYLFDGYAHLSSGL 100 (145)
Q Consensus 28 iGsa~G~g~aG~a~~~a~~~~Pe~~------~k~li~~a~~e~~~IYGlIiaill~~~i~~~-~~~~~~~~g~~~~~aGL 100 (145)
+|-|-|.-..|-=+.-.=.|++|.- ...=+..++.-.+.+||.+ ..+-+.. .++....++|..|.+|.
T Consensus 50 iGmAHGYfL~GPF~~lGPLRnte~a~laGllsaiglv~IlT~~LsiYg~~-----~f~~~~~~~~~l~t~~gWs~Ft~GF 124 (154)
T 1jb0_L 50 VGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLV-----SFQKGGSSSDPLKTSEGWSQFTAGF 124 (154)
T ss_dssp HHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSSCCCSSCGGGSHHHHHHHHHHH
T ss_pred hhhcceeeeechhHhcccCcCcchHHHHHHHHHHHHHHHHHHHHHHhccC-----ccCCCCCCcccccCcccHhHcccce
Confidence 4556666677766666667777741 2222344555567778865 2222111 23456679999999999
Q ss_pred HHHHHH
Q 032205 101 ACGLAG 106 (145)
Q Consensus 101 ~vGl~~ 106 (145)
.+|=++
T Consensus 125 ~iGg~G 130 (154)
T 1jb0_L 125 FVGAMG 130 (154)
T ss_dssp HHHHHH
T ss_pred eeeccc
Confidence 888554
Done!