Query 032207
Match_columns 145
No_of_seqs 197 out of 1101
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 11:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02888 enoyl-CoA hydratase 100.0 2E-39 4.2E-44 244.9 15.8 143 1-143 2-144 (265)
2 PRK09120 p-hydroxycinnamoyl Co 100.0 3.7E-39 7.9E-44 244.5 15.3 143 1-144 1-150 (275)
3 PRK05674 gamma-carboxygeranoyl 100.0 1.1E-38 2.3E-43 240.9 14.7 139 6-144 3-147 (265)
4 PRK08138 enoyl-CoA hydratase; 100.0 2E-38 4.3E-43 238.9 15.4 141 4-144 3-144 (261)
5 PRK06143 enoyl-CoA hydratase; 100.0 1.6E-38 3.6E-43 238.8 14.0 137 7-143 5-145 (256)
6 PRK06142 enoyl-CoA hydratase; 100.0 1.5E-38 3.2E-43 240.8 13.4 139 5-144 3-155 (272)
7 PRK05862 enoyl-CoA hydratase; 100.0 3.3E-38 7.1E-43 237.3 15.0 137 7-144 3-140 (257)
8 PRK05995 enoyl-CoA hydratase; 100.0 4.6E-38 1E-42 237.0 15.6 137 7-144 3-145 (262)
9 PRK06072 enoyl-CoA hydratase; 100.0 3.2E-38 6.9E-43 236.2 14.3 134 10-144 2-135 (248)
10 PRK06023 enoyl-CoA hydratase; 100.0 4.6E-38 1E-42 235.7 15.0 134 9-143 4-142 (251)
11 PRK05870 enoyl-CoA hydratase; 100.0 3.7E-38 8E-43 236.0 14.5 135 9-144 4-141 (249)
12 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.1E-38 4.6E-43 238.3 13.2 137 6-143 3-143 (257)
13 PRK06190 enoyl-CoA hydratase; 100.0 5.1E-38 1.1E-42 236.3 15.1 137 7-144 3-140 (258)
14 PRK06144 enoyl-CoA hydratase; 100.0 3.9E-38 8.5E-43 237.4 14.4 142 1-143 1-148 (262)
15 TIGR03210 badI 2-ketocyclohexa 100.0 5.8E-38 1.3E-42 235.8 14.9 137 7-144 1-141 (256)
16 PRK06688 enoyl-CoA hydratase; 100.0 5.7E-38 1.2E-42 236.1 14.8 138 6-144 3-142 (259)
17 PRK08139 enoyl-CoA hydratase; 100.0 6.9E-38 1.5E-42 236.6 15.2 138 6-144 9-150 (266)
18 PRK07327 enoyl-CoA hydratase; 100.0 6.1E-38 1.3E-42 237.1 14.8 139 5-143 8-151 (268)
19 PRK09674 enoyl-CoA hydratase-i 100.0 6.2E-38 1.3E-42 235.5 14.5 134 9-143 3-137 (255)
20 PRK07511 enoyl-CoA hydratase; 100.0 7.1E-38 1.5E-42 235.8 14.8 135 9-144 4-144 (260)
21 PRK07468 enoyl-CoA hydratase; 100.0 1.1E-37 2.5E-42 234.9 15.8 137 7-143 3-145 (262)
22 PRK08150 enoyl-CoA hydratase; 100.0 8.1E-38 1.8E-42 234.9 14.6 135 7-144 1-138 (255)
23 PRK05980 enoyl-CoA hydratase; 100.0 5.4E-38 1.2E-42 236.4 13.3 134 9-143 4-145 (260)
24 PRK07799 enoyl-CoA hydratase; 100.0 1.1E-37 2.4E-42 235.1 15.0 139 5-144 2-146 (263)
25 PRK07827 enoyl-CoA hydratase; 100.0 7.5E-38 1.6E-42 235.7 13.9 140 4-144 2-147 (260)
26 PRK06494 enoyl-CoA hydratase; 100.0 1.6E-37 3.5E-42 233.8 15.2 136 7-144 3-140 (259)
27 PRK07260 enoyl-CoA hydratase; 100.0 1.6E-37 3.4E-42 233.3 15.0 135 8-143 2-143 (255)
28 PRK05864 enoyl-CoA hydratase; 100.0 1.5E-37 3.3E-42 235.8 15.1 140 3-142 4-153 (276)
29 PRK08272 enoyl-CoA hydratase; 100.0 1.3E-37 2.9E-42 238.8 14.4 139 3-142 5-172 (302)
30 PRK09245 enoyl-CoA hydratase; 100.0 1.3E-37 2.7E-42 235.1 14.0 134 9-143 4-148 (266)
31 PRK06563 enoyl-CoA hydratase; 100.0 1.3E-37 2.8E-42 233.8 14.0 133 10-143 1-137 (255)
32 PRK08140 enoyl-CoA hydratase; 100.0 1.5E-37 3.2E-42 234.2 14.3 135 7-143 3-144 (262)
33 PRK07509 enoyl-CoA hydratase; 100.0 1.6E-37 3.5E-42 234.0 14.5 137 7-144 2-148 (262)
34 PRK05809 3-hydroxybutyryl-CoA 100.0 1.9E-37 4.1E-42 233.5 14.6 137 7-144 3-143 (260)
35 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.1E-37 2.3E-42 233.8 13.1 133 10-144 3-135 (251)
36 PRK08260 enoyl-CoA hydratase; 100.0 1.6E-37 3.5E-42 237.7 14.4 137 7-144 3-159 (296)
37 PRK06127 enoyl-CoA hydratase; 100.0 1.6E-37 3.4E-42 234.9 14.1 139 4-143 7-151 (269)
38 PRK05869 enoyl-CoA hydratase; 100.0 1.1E-37 2.5E-42 229.9 13.0 135 8-143 3-144 (222)
39 PLN02664 enoyl-CoA hydratase/d 100.0 1.3E-37 2.9E-42 236.0 13.3 138 6-143 3-156 (275)
40 PRK07657 enoyl-CoA hydratase; 100.0 2.2E-37 4.8E-42 233.1 14.3 137 8-144 3-143 (260)
41 PRK06210 enoyl-CoA hydratase; 100.0 4.5E-37 9.8E-42 232.7 15.7 138 6-144 3-154 (272)
42 PRK07110 polyketide biosynthes 100.0 3.3E-37 7.1E-42 230.9 14.8 137 7-144 4-140 (249)
43 PRK05981 enoyl-CoA hydratase; 100.0 2.2E-37 4.8E-42 233.8 13.8 136 7-143 3-148 (266)
44 TIGR01929 menB naphthoate synt 100.0 3.1E-37 6.8E-42 232.2 14.5 136 8-143 2-142 (259)
45 PRK07659 enoyl-CoA hydratase; 100.0 4.2E-37 9E-42 231.6 15.1 138 5-144 3-144 (260)
46 PRK12478 enoyl-CoA hydratase; 100.0 3.1E-37 6.7E-42 236.2 14.5 137 6-143 3-158 (298)
47 TIGR02280 PaaB1 phenylacetate 100.0 2.3E-37 5E-42 232.5 13.4 132 10-143 1-138 (256)
48 PRK09076 enoyl-CoA hydratase; 100.0 3.5E-37 7.5E-42 231.8 14.1 134 9-144 4-141 (258)
49 PRK08259 enoyl-CoA hydratase; 100.0 3.8E-37 8.3E-42 231.1 14.2 134 9-143 4-138 (254)
50 PRK06495 enoyl-CoA hydratase; 100.0 2.5E-37 5.5E-42 232.5 12.9 135 7-143 3-142 (257)
51 PRK08290 enoyl-CoA hydratase; 100.0 3.6E-37 7.8E-42 234.9 13.7 136 6-142 2-162 (288)
52 PRK11423 methylmalonyl-CoA dec 100.0 4.1E-37 8.9E-42 231.8 13.7 135 7-143 3-141 (261)
53 KOG1680 Enoyl-CoA hydratase [L 100.0 1.4E-37 3.1E-42 229.8 10.9 141 4-144 32-173 (290)
54 PRK08258 enoyl-CoA hydratase; 100.0 5.7E-37 1.2E-41 232.7 14.5 134 8-142 17-157 (277)
55 PLN02157 3-hydroxyisobutyryl-C 100.0 6E-37 1.3E-41 241.7 15.1 138 6-144 35-179 (401)
56 PRK07854 enoyl-CoA hydratase; 100.0 4.1E-37 8.9E-42 229.6 13.4 131 10-144 2-132 (243)
57 PRK07396 dihydroxynaphthoic ac 100.0 7.8E-37 1.7E-41 231.6 14.9 137 6-143 11-152 (273)
58 PRK08252 enoyl-CoA hydratase; 100.0 6.8E-37 1.5E-41 229.8 14.5 133 8-143 3-136 (254)
59 PRK07658 enoyl-CoA hydratase; 100.0 6E-37 1.3E-41 230.3 14.0 134 9-144 3-140 (257)
60 PLN02874 3-hydroxyisobutyryl-C 100.0 9.3E-37 2E-41 240.1 15.2 141 3-144 6-151 (379)
61 PRK07938 enoyl-CoA hydratase; 100.0 7.8E-37 1.7E-41 228.9 13.2 133 10-143 3-139 (249)
62 PRK07112 polyketide biosynthes 100.0 1.3E-36 2.8E-41 228.3 14.4 135 7-144 3-142 (255)
63 PRK03580 carnitinyl-CoA dehydr 100.0 1.6E-36 3.4E-41 228.6 14.6 133 9-143 4-139 (261)
64 PLN02600 enoyl-CoA hydratase 100.0 9.9E-37 2.2E-41 228.5 13.1 129 16-144 2-134 (251)
65 PRK05617 3-hydroxyisobutyryl-C 100.0 1.5E-36 3.3E-41 236.2 14.3 136 8-144 3-146 (342)
66 PLN02988 3-hydroxyisobutyryl-C 100.0 2E-36 4.4E-41 237.8 14.8 140 4-144 5-151 (381)
67 PF00378 ECH: Enoyl-CoA hydrat 100.0 6.2E-37 1.3E-41 228.7 10.9 132 11-143 1-135 (245)
68 PLN03214 probable enoyl-CoA hy 100.0 1.1E-35 2.3E-40 225.9 13.9 137 6-143 9-153 (278)
69 PLN02921 naphthoate synthase 100.0 1.8E-35 3.8E-40 228.7 14.9 137 6-142 63-205 (327)
70 PLN02851 3-hydroxyisobutyryl-C 100.0 1.7E-35 3.7E-40 233.5 13.9 139 5-144 39-184 (407)
71 PRK08321 naphthoate synthase; 100.0 7.7E-35 1.7E-39 223.4 14.3 135 7-142 22-180 (302)
72 PRK06213 enoyl-CoA hydratase; 100.0 9.6E-35 2.1E-39 215.2 13.3 130 8-141 3-135 (229)
73 PLN02267 enoyl-CoA hydratase/i 100.0 7.9E-35 1.7E-39 216.9 12.9 132 10-143 2-141 (239)
74 PRK08788 enoyl-CoA hydratase; 100.0 2.1E-34 4.6E-39 219.2 14.5 132 10-143 19-166 (287)
75 TIGR03200 dearomat_oah 6-oxocy 100.0 1E-34 2.2E-39 224.3 12.3 126 19-144 38-170 (360)
76 PRK11730 fadB multifunctional 100.0 2.4E-34 5.2E-39 241.5 15.4 136 8-143 6-147 (715)
77 TIGR02437 FadB fatty oxidation 100.0 8.6E-34 1.9E-38 237.9 15.6 136 9-144 7-148 (714)
78 cd06558 crotonase-like Crotona 100.0 1.3E-33 2.7E-38 203.8 13.1 133 10-143 1-138 (195)
79 TIGR03222 benzo_boxC benzoyl-C 100.0 2.5E-32 5.3E-37 222.3 15.5 138 5-143 8-167 (546)
80 TIGR02441 fa_ox_alpha_mit fatt 100.0 2.1E-32 4.6E-37 230.0 14.8 138 6-144 11-156 (737)
81 KOG1681 Enoyl-CoA isomerase [L 100.0 3.1E-33 6.7E-38 201.9 7.9 138 5-142 16-170 (292)
82 TIGR02440 FadJ fatty oxidation 100.0 2.3E-32 5E-37 229.0 13.9 135 10-144 2-144 (699)
83 PRK11154 fadJ multifunctional 100.0 6.6E-32 1.4E-36 226.6 15.3 135 9-143 6-148 (708)
84 TIGR03222 benzo_boxC benzoyl-C 100.0 4E-32 8.6E-37 221.1 13.1 135 8-143 256-419 (546)
85 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.1E-31 4.7E-36 217.2 15.6 139 4-143 11-171 (550)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 7.3E-32 1.6E-36 220.0 12.2 137 8-144 260-424 (550)
87 KOG1679 Enoyl-CoA hydratase [L 100.0 1.4E-31 2.9E-36 192.1 8.0 129 16-144 38-170 (291)
88 KOG0016 Enoyl-CoA hydratase/is 100.0 1.4E-28 3E-33 180.6 13.1 139 6-145 5-155 (266)
89 KOG1684 Enoyl-CoA hydratase [L 99.9 8.3E-26 1.8E-30 172.4 11.0 137 6-143 36-180 (401)
90 COG0447 MenB Dihydroxynaphthoi 99.9 2.6E-26 5.6E-31 165.1 6.7 137 5-141 15-159 (282)
91 KOG1682 Enoyl-CoA isomerase [L 99.9 1.2E-25 2.6E-30 160.5 8.2 130 10-140 34-167 (287)
92 cd07014 S49_SppA Signal peptid 99.7 1E-16 2.2E-21 114.5 9.1 89 36-137 22-110 (177)
93 cd07019 S49_SppA_1 Signal pept 99.7 5.1E-16 1.1E-20 113.8 10.5 102 18-132 1-104 (211)
94 cd07022 S49_Sppa_36K_type Sign 99.6 5.7E-14 1.2E-18 103.1 11.4 96 26-135 14-110 (214)
95 cd07023 S49_Sppa_N_C Signal pe 99.6 4.1E-14 8.8E-19 103.4 9.8 101 19-134 2-102 (208)
96 cd07020 Clp_protease_NfeD_1 No 99.5 1.2E-13 2.7E-18 99.4 9.6 98 19-139 1-102 (187)
97 cd00394 Clp_protease_like Case 99.4 1.3E-12 2.9E-17 91.6 9.0 92 33-140 8-99 (161)
98 TIGR00706 SppA_dom signal pept 99.4 2.6E-12 5.6E-17 93.9 9.1 95 19-135 2-98 (207)
99 cd07018 S49_SppA_67K_type Sign 99.3 1.8E-11 3.9E-16 90.4 7.9 89 32-134 25-113 (222)
100 TIGR00705 SppA_67K signal pept 99.1 4.6E-10 9.9E-15 93.3 10.5 100 16-131 307-411 (584)
101 cd07016 S14_ClpP_1 Caseinolyti 99.1 3E-10 6.6E-15 79.7 8.0 87 36-141 15-101 (160)
102 cd07021 Clp_protease_NfeD_like 99.1 7.1E-10 1.5E-14 79.3 9.9 97 20-138 2-98 (178)
103 PRK10949 protease 4; Provision 98.3 5.7E-06 1.2E-10 69.4 9.8 102 16-133 325-431 (618)
104 cd07015 Clp_protease_NfeD Nodu 98.2 1.5E-05 3.2E-10 56.8 9.3 96 20-137 2-100 (172)
105 COG0616 SppA Periplasmic serin 98.1 2.7E-05 5.8E-10 60.6 8.5 108 18-139 60-169 (317)
106 PF01972 SDH_sah: Serine dehyd 98.0 7.9E-05 1.7E-09 56.3 10.3 94 30-142 69-162 (285)
107 PRK07189 malonate decarboxylas 98.0 0.0002 4.4E-09 55.1 12.1 109 18-134 69-183 (301)
108 cd07013 S14_ClpP Caseinolytic 98.0 3.4E-05 7.3E-10 54.4 7.1 83 33-133 9-95 (162)
109 TIGR03133 malonate_beta malona 97.8 0.00061 1.3E-08 51.9 12.1 107 19-133 61-173 (274)
110 KOG1683 Hydroxyacyl-CoA dehydr 97.8 4.5E-06 9.7E-11 65.2 0.1 108 18-127 66-179 (380)
111 PRK11778 putative inner membra 97.8 0.00058 1.3E-08 53.3 11.6 103 17-136 90-192 (330)
112 PF00574 CLP_protease: Clp pro 97.7 0.00055 1.2E-08 48.9 9.0 90 33-140 25-118 (182)
113 cd07017 S14_ClpP_2 Caseinolyti 97.5 0.00031 6.7E-09 49.8 6.2 88 33-138 18-109 (171)
114 TIGR00705 SppA_67K signal pept 97.5 0.00072 1.6E-08 56.7 9.2 84 37-133 77-160 (584)
115 PRK12319 acetyl-CoA carboxylas 97.5 0.0032 6.9E-08 47.6 11.3 96 30-133 76-171 (256)
116 TIGR00515 accD acetyl-CoA carb 97.4 0.0056 1.2E-07 47.0 12.4 108 19-134 122-230 (285)
117 PRK12553 ATP-dependent Clp pro 97.4 0.0007 1.5E-08 49.6 6.6 87 32-136 43-133 (207)
118 PRK05654 acetyl-CoA carboxylas 97.3 0.0052 1.1E-07 47.3 11.1 108 19-134 123-231 (292)
119 PRK00277 clpP ATP-dependent Cl 97.3 0.0015 3.2E-08 47.6 7.6 86 31-134 38-127 (200)
120 PF01039 Carboxyl_trans: Carbo 97.3 0.0031 6.8E-08 51.9 9.8 106 19-133 59-167 (493)
121 CHL00198 accA acetyl-CoA carbo 97.3 0.0075 1.6E-07 47.0 11.2 96 30-133 132-227 (322)
122 PRK10949 protease 4; Provision 97.2 0.0023 5E-08 54.0 8.7 84 37-133 96-179 (618)
123 PRK14512 ATP-dependent Clp pro 97.2 0.003 6.5E-08 45.9 7.9 83 33-133 32-118 (197)
124 PRK05724 acetyl-CoA carboxylas 97.2 0.011 2.3E-07 46.1 11.2 96 30-133 129-224 (319)
125 CHL00174 accD acetyl-CoA carbo 97.2 0.02 4.2E-07 44.2 12.5 108 19-134 135-244 (296)
126 TIGR00513 accA acetyl-CoA carb 97.0 0.018 3.8E-07 44.8 11.2 96 30-133 129-224 (316)
127 COG1030 NfeD Membrane-bound se 96.9 0.0085 1.8E-07 48.3 9.0 96 17-135 26-125 (436)
128 PLN03229 acetyl-coenzyme A car 96.9 0.025 5.5E-07 48.3 11.7 96 30-133 220-315 (762)
129 PLN03230 acetyl-coenzyme A car 96.7 0.034 7.4E-07 44.7 11.0 95 31-133 200-294 (431)
130 TIGR01117 mmdA methylmalonyl-C 96.6 0.045 9.6E-07 45.4 11.5 104 19-133 84-190 (512)
131 TIGR01117 mmdA methylmalonyl-C 96.6 0.031 6.7E-07 46.3 10.5 107 19-133 317-427 (512)
132 CHL00028 clpP ATP-dependent Cl 96.6 0.019 4.1E-07 41.9 8.1 87 32-136 38-128 (200)
133 PF01343 Peptidase_S49: Peptid 96.5 0.0059 1.3E-07 42.5 4.7 44 94-137 2-45 (154)
134 PLN02820 3-methylcrotonyl-CoA 96.4 0.077 1.7E-06 44.6 11.7 107 19-133 131-241 (569)
135 TIGR03134 malonate_gamma malon 96.2 0.11 2.5E-06 38.8 10.4 108 17-133 31-143 (238)
136 TIGR00493 clpP ATP-dependent C 96.1 0.042 9.2E-07 39.7 7.6 87 32-136 34-124 (191)
137 COG0777 AccD Acetyl-CoA carbox 95.9 0.075 1.6E-06 40.4 8.2 110 18-135 123-233 (294)
138 PRK14514 ATP-dependent Clp pro 95.9 0.067 1.5E-06 39.6 7.9 86 32-135 62-151 (221)
139 PRK12551 ATP-dependent Clp pro 95.8 0.07 1.5E-06 38.8 7.7 86 32-135 33-122 (196)
140 PRK14513 ATP-dependent Clp pro 95.2 0.16 3.6E-06 37.0 7.7 86 32-135 35-124 (201)
141 COG4799 Acetyl-CoA carboxylase 95.1 0.12 2.7E-06 42.8 7.7 95 25-128 99-193 (526)
142 COG0740 ClpP Protease subunit 94.3 0.36 7.9E-06 35.2 7.7 45 88-132 75-121 (200)
143 PF01039 Carboxyl_trans: Carbo 93.7 0.37 8.1E-06 39.8 7.5 109 17-133 293-406 (493)
144 COG0074 SucD Succinyl-CoA synt 92.6 0.34 7.4E-06 37.1 5.3 55 42-113 189-243 (293)
145 PLN02820 3-methylcrotonyl-CoA 91.5 1.5 3.3E-05 37.0 8.5 95 31-133 380-478 (569)
146 PRK12552 ATP-dependent Clp pro 91.5 2.2 4.7E-05 31.7 8.4 95 32-135 48-146 (222)
147 PF13607 Succ_CoA_lig: Succiny 91.3 0.72 1.6E-05 31.6 5.4 51 40-108 41-91 (138)
148 COG0825 AccA Acetyl-CoA carbox 88.9 0.84 1.8E-05 35.2 4.5 97 35-145 133-230 (317)
149 PLN02522 ATP citrate (pro-S)-l 87.3 1.4 3E-05 37.5 5.2 53 40-110 209-262 (608)
150 PTZ00187 succinyl-CoA syntheta 87.1 1.7 3.8E-05 33.9 5.4 54 40-110 211-264 (317)
151 PF02601 Exonuc_VII_L: Exonucl 84.4 3.2 6.8E-05 32.2 5.7 78 35-128 54-135 (319)
152 TIGR00237 xseA exodeoxyribonuc 82.5 3 6.6E-05 33.9 5.0 80 34-128 168-247 (432)
153 TIGR02717 AcCoA-syn-alpha acet 78.2 2.1 4.6E-05 35.0 2.8 62 39-119 189-250 (447)
154 TIGR01019 sucCoAalpha succinyl 77.9 6.3 0.00014 30.4 5.2 52 40-110 185-237 (286)
155 PF00549 Ligase_CoA: CoA-ligas 76.9 7.9 0.00017 27.0 5.0 57 40-111 60-121 (153)
156 PRK05678 succinyl-CoA syntheta 76.7 6.7 0.00014 30.3 5.0 52 40-110 187-239 (291)
157 COG4799 Acetyl-CoA carboxylase 76.0 18 0.00039 30.4 7.6 105 19-132 326-435 (526)
158 KOG0540 3-Methylcrotonyl-CoA c 75.1 17 0.00037 30.0 7.0 106 19-133 351-460 (536)
159 PLN00125 Succinyl-CoA ligase [ 74.1 8.5 0.00019 29.9 5.0 53 41-110 193-245 (300)
160 PRK00286 xseA exodeoxyribonucl 72.2 8 0.00017 31.4 4.7 77 35-128 175-252 (438)
161 COG0002 ArgC Acetylglutamate s 72.1 10 0.00022 30.2 5.0 91 43-137 17-137 (349)
162 PF06258 Mito_fiss_Elm1: Mitoc 72.0 45 0.00097 26.0 10.5 107 29-136 121-245 (311)
163 COG3660 Predicted nucleoside-d 71.1 40 0.00087 26.1 7.8 113 21-135 131-260 (329)
164 COG1570 XseA Exonuclease VII, 70.3 9.4 0.0002 31.3 4.6 78 36-128 176-253 (440)
165 PRK06091 membrane protein FdrA 67.6 16 0.00035 30.9 5.6 53 40-110 239-291 (555)
166 PRK05368 homoserine O-succinyl 66.5 45 0.00098 26.0 7.5 79 19-108 67-145 (302)
167 COG0793 Prc Periplasmic protea 64.2 12 0.00027 30.3 4.2 93 19-118 205-307 (406)
168 PF01740 STAS: STAS domain; I 62.1 28 0.0006 22.3 5.0 48 10-63 2-57 (117)
169 cd04241 AAK_FomA-like AAK_FomA 61.6 23 0.0005 26.3 5.1 37 26-65 13-49 (252)
170 COG0528 PyrH Uridylate kinase 58.2 45 0.00097 25.1 5.9 37 29-66 21-57 (238)
171 TIGR00377 ant_ant_sig anti-ant 58.2 33 0.00071 21.5 4.8 49 9-63 4-52 (108)
172 COG1105 FruK Fructose-1-phosph 58.0 90 0.002 24.5 9.9 38 19-62 101-138 (310)
173 COG0252 AnsB L-asparaginase/ar 55.0 51 0.0011 26.3 6.2 31 31-61 78-108 (351)
174 smart00870 Asparaginase Aspara 54.7 51 0.0011 25.8 6.1 31 31-61 55-85 (323)
175 COG5256 TEF1 Translation elong 54.0 46 0.00099 27.2 5.7 55 20-74 76-131 (428)
176 TIGR00520 asnASE_II L-asparagi 53.6 1.1E+02 0.0023 24.4 7.8 32 30-61 82-113 (349)
177 PF01990 ATP-synt_F: ATP synth 51.6 44 0.00095 20.9 4.5 52 38-109 27-79 (95)
178 KOG1255 Succinyl-CoA synthetas 51.1 42 0.00092 25.6 4.8 72 17-111 202-275 (329)
179 PF03464 eRF1_2: eRF1 domain 2 49.3 35 0.00075 22.9 3.9 45 19-63 25-83 (133)
180 smart00463 SMR Small MutS-rela 48.7 42 0.0009 20.1 3.9 31 35-65 12-43 (80)
181 PF06833 MdcE: Malonate decarb 47.1 38 0.00081 25.4 4.0 97 30-131 40-139 (234)
182 TIGR02886 spore_II_AA anti-sig 45.2 75 0.0016 19.8 6.0 50 11-66 2-51 (106)
183 PF02358 Trehalose_PPase: Treh 45.0 38 0.00081 24.8 3.9 29 35-63 18-46 (235)
184 PF11215 DUF3010: Protein of u 44.8 97 0.0021 21.3 5.5 47 19-70 32-80 (138)
185 PRK14556 pyrH uridylate kinase 44.5 47 0.001 25.1 4.3 38 29-67 31-68 (249)
186 PF02350 Epimerase_2: UDP-N-ac 44.4 40 0.00086 26.5 4.1 44 16-61 179-222 (346)
187 cd03255 ABC_MJ0796_Lo1CDE_FtsE 42.9 71 0.0015 22.8 5.0 39 21-61 161-199 (218)
188 PF04536 TPM: TLP18.3, Psb32 a 42.0 35 0.00075 21.8 3.0 29 33-61 2-30 (119)
189 PF01713 Smr: Smr domain; Int 41.8 48 0.001 20.0 3.4 35 35-69 9-43 (83)
190 cd03225 ABC_cobalt_CbiO_domain 41.7 78 0.0017 22.5 5.1 38 21-61 155-192 (211)
191 cd03216 ABC_Carb_Monos_I This 40.7 96 0.0021 21.2 5.2 38 21-61 103-140 (163)
192 TIGR01277 thiQ thiamine ABC tr 40.7 82 0.0018 22.5 5.0 39 21-61 149-187 (213)
193 cd03297 ABC_ModC_molybdenum_tr 40.1 79 0.0017 22.6 4.9 39 21-61 152-190 (214)
194 PF02081 TrpBP: Tryptophan RNA 40.1 55 0.0012 19.8 3.2 28 1-28 1-28 (75)
195 PRK10584 putative ABC transpor 39.7 84 0.0018 22.7 5.0 39 21-61 167-205 (228)
196 cd03267 ABC_NatA_like Similar 39.4 98 0.0021 22.6 5.4 38 21-61 174-211 (236)
197 TIGR02211 LolD_lipo_ex lipopro 39.2 86 0.0019 22.4 5.0 39 21-61 162-200 (221)
198 PRK04342 DNA topoisomerase VI 38.7 1.1E+02 0.0023 24.6 5.7 53 89-141 231-286 (367)
199 cd03300 ABC_PotA_N PotA is an 38.6 86 0.0019 22.8 4.9 39 21-61 151-189 (232)
200 cd03298 ABC_ThiQ_thiamine_tran 38.5 89 0.0019 22.2 4.9 39 21-61 149-187 (211)
201 PRK06731 flhF flagellar biosyn 38.0 1.8E+02 0.0039 22.2 6.8 40 19-61 155-194 (270)
202 cd03265 ABC_DrrA DrrA is the A 37.9 1E+02 0.0023 22.0 5.3 39 21-61 152-190 (220)
203 cd03214 ABC_Iron-Siderophores_ 37.3 1E+02 0.0022 21.4 4.9 39 21-61 118-156 (180)
204 cd03261 ABC_Org_Solvent_Resist 37.3 91 0.002 22.6 4.9 39 21-61 157-195 (235)
205 PRK11831 putative ABC transpor 37.0 94 0.002 23.2 5.0 39 21-61 164-202 (269)
206 PF00195 Chal_sti_synt_N: Chal 37.0 69 0.0015 23.9 4.1 75 40-130 107-183 (226)
207 cd03293 ABC_NrtD_SsuB_transpor 37.0 1E+02 0.0022 22.2 5.0 39 21-61 152-190 (220)
208 PRK13646 cbiO cobalt transport 36.8 91 0.002 23.6 5.0 40 21-62 166-205 (286)
209 PRK10247 putative ABC transpor 36.8 96 0.0021 22.4 4.9 40 21-62 158-197 (225)
210 cd03229 ABC_Class3 This class 36.7 1.1E+02 0.0024 21.2 5.0 38 21-60 121-158 (178)
211 TIGR01184 ntrCD nitrate transp 36.4 1E+02 0.0023 22.4 5.1 39 21-61 135-173 (230)
212 cd03259 ABC_Carb_Solutes_like 36.3 99 0.0021 22.0 4.9 39 21-61 151-189 (213)
213 PF13304 AAA_21: AAA domain; P 36.2 1.2E+02 0.0026 21.2 5.3 40 20-62 259-298 (303)
214 PRK14053 methyltransferase; Pr 36.1 56 0.0012 23.6 3.4 61 17-77 22-89 (194)
215 cd03257 ABC_NikE_OppD_transpor 35.9 1E+02 0.0022 22.1 4.9 39 21-61 166-204 (228)
216 COG2201 CheB Chemotaxis respon 35.6 2.1E+02 0.0045 22.9 6.8 60 7-69 233-292 (350)
217 KOG3179 Predicted glutamine sy 35.6 89 0.0019 23.2 4.4 44 53-108 59-103 (245)
218 PF04439 Adenyl_transf: Strept 35.6 35 0.00075 26.3 2.4 22 41-62 8-29 (282)
219 PRK11096 ansB L-asparaginase I 35.5 2.3E+02 0.0049 22.6 7.6 40 19-61 69-108 (347)
220 KOG3040 Predicted sugar phosph 35.4 68 0.0015 24.0 3.8 43 85-127 125-181 (262)
221 TIGR03410 urea_trans_UrtE urea 35.3 1.2E+02 0.0025 21.9 5.2 39 21-61 152-190 (230)
222 PRK09984 phosphonate/organopho 35.3 96 0.0021 23.0 4.8 40 21-62 173-212 (262)
223 cd03256 ABC_PhnC_transporter A 35.2 1E+02 0.0022 22.4 4.8 39 21-61 165-203 (241)
224 TIGR00960 3a0501s02 Type II (G 35.2 1.2E+02 0.0026 21.6 5.2 38 21-61 159-196 (216)
225 PRK15112 antimicrobial peptide 35.1 99 0.0021 23.1 4.9 39 21-61 170-208 (267)
226 cd03301 ABC_MalK_N The N-termi 35.0 1.1E+02 0.0023 21.8 4.9 39 21-61 151-189 (213)
227 PRK11148 cyclic 3',5'-adenosin 34.7 1.2E+02 0.0025 22.8 5.2 61 35-110 36-97 (275)
228 cd03235 ABC_Metallic_Cations A 34.6 1.2E+02 0.0026 21.6 5.1 38 21-61 153-190 (213)
229 PRK11629 lolD lipoprotein tran 34.6 1.2E+02 0.0025 22.1 5.1 39 21-61 166-204 (233)
230 cd01745 GATase1_2 Subgroup of 34.5 68 0.0015 22.8 3.7 21 88-108 90-110 (189)
231 COG1131 CcmA ABC-type multidru 34.3 1.2E+02 0.0025 23.3 5.2 38 21-61 157-194 (293)
232 PRK11300 livG leucine/isoleuci 34.2 1.2E+02 0.0026 22.3 5.2 39 21-61 174-212 (255)
233 cd03213 ABCG_EPDR ABCG transpo 34.1 1.4E+02 0.0029 21.1 5.2 38 21-61 132-169 (194)
234 cd00842 MPP_ASMase acid sphing 34.1 2E+02 0.0044 21.6 7.2 82 17-110 168-259 (296)
235 TIGR02315 ABC_phnC phosphonate 34.0 1.1E+02 0.0023 22.3 4.8 39 21-61 166-204 (243)
236 cd03258 ABC_MetN_methionine_tr 33.9 1.1E+02 0.0024 22.1 4.9 39 21-61 161-199 (233)
237 PRK10908 cell division protein 33.9 1.3E+02 0.0027 21.6 5.1 38 21-61 158-195 (222)
238 PRK11248 tauB taurine transpor 33.8 1.1E+02 0.0024 22.7 4.9 39 21-61 149-187 (255)
239 PRK13634 cbiO cobalt transport 33.7 1.1E+02 0.0024 23.2 5.0 40 21-62 166-205 (290)
240 COG4637 Predicted ATPase [Gene 33.7 1.1E+02 0.0023 24.5 4.8 39 20-62 292-330 (373)
241 PRK11247 ssuB aliphatic sulfon 33.6 1.1E+02 0.0024 22.8 4.9 39 21-61 154-192 (257)
242 TIGR01166 cbiO cobalt transpor 33.5 1.3E+02 0.0029 20.9 5.1 37 21-60 148-184 (190)
243 COG0488 Uup ATPase components 33.5 76 0.0016 26.8 4.3 41 22-69 461-501 (530)
244 PRK01160 hypothetical protein; 33.3 1.3E+02 0.0028 21.6 4.9 39 21-62 86-124 (178)
245 PRK15093 antimicrobial peptide 33.2 1.1E+02 0.0024 23.8 5.0 40 21-62 179-218 (330)
246 TIGR03821 AblA_like_1 lysine-2 33.0 49 0.0011 25.8 2.9 28 39-67 128-155 (321)
247 cd03230 ABC_DR_subfamily_A Thi 32.8 1.3E+02 0.0028 20.7 4.9 38 21-61 116-153 (173)
248 PF04208 MtrA: Tetrahydrometha 32.8 55 0.0012 23.4 2.9 62 16-77 21-92 (176)
249 cd03295 ABC_OpuCA_Osmoprotecti 32.8 1.1E+02 0.0024 22.3 4.8 39 21-61 156-194 (242)
250 cd03246 ABCC_Protease_Secretio 32.7 1.4E+02 0.0031 20.5 5.1 38 21-61 117-154 (173)
251 COG1126 GlnQ ABC-type polar am 32.7 1.3E+02 0.0027 22.7 4.9 38 22-62 158-195 (240)
252 COG0047 PurL Phosphoribosylfor 32.7 2.1E+02 0.0045 21.5 6.0 85 17-112 3-95 (231)
253 PRK10253 iron-enterobactin tra 32.6 1.2E+02 0.0026 22.5 5.0 39 21-61 164-202 (265)
254 TIGR03864 PQQ_ABC_ATP ABC tran 32.6 1.3E+02 0.0028 21.9 5.0 40 21-62 153-192 (236)
255 PRK11701 phnK phosphonate C-P 32.5 1.2E+02 0.0027 22.3 5.0 39 21-61 172-210 (258)
256 cd06567 Peptidase_S41 C-termin 32.5 61 0.0013 23.4 3.3 93 19-118 61-164 (224)
257 cd07561 Peptidase_S41_CPP_like 32.3 97 0.0021 23.3 4.4 38 16-60 63-100 (256)
258 PF12268 DUF3612: Protein of u 32.0 40 0.00087 23.6 2.0 26 53-78 79-104 (178)
259 PRK04155 chaperone protein Hch 31.8 94 0.002 24.0 4.3 25 85-109 167-191 (287)
260 TIGR03822 AblA_like_2 lysine-2 31.7 51 0.0011 25.7 2.9 70 39-108 122-207 (321)
261 cd03296 ABC_CysA_sulfate_impor 31.7 1.2E+02 0.0027 22.0 4.9 39 21-61 157-195 (239)
262 TIGR03005 ectoine_ehuA ectoine 31.7 1.3E+02 0.0028 22.1 5.0 40 21-62 167-206 (252)
263 cd03226 ABC_cobalt_CbiO_domain 31.7 1.5E+02 0.0033 20.9 5.2 37 21-61 147-183 (205)
264 PRK00964 tetrahydromethanopter 31.6 69 0.0015 23.9 3.3 62 16-77 24-96 (225)
265 PRK13633 cobalt transporter AT 31.4 1.2E+02 0.0027 22.8 4.9 40 21-62 165-204 (280)
266 cd03233 ABC_PDR_domain1 The pl 31.4 1.6E+02 0.0034 21.0 5.2 39 21-61 139-177 (202)
267 cd03228 ABCC_MRP_Like The MRP 31.2 1.5E+02 0.0033 20.3 5.0 37 21-62 117-153 (171)
268 TIGR03608 L_ocin_972_ABC putat 31.2 1.5E+02 0.0033 20.8 5.2 38 21-61 155-192 (206)
269 TIGR02323 CP_lyasePhnK phospho 31.1 1.3E+02 0.0029 22.0 5.0 39 21-61 169-207 (253)
270 cd01741 GATase1_1 Subgroup of 31.0 1.2E+02 0.0025 21.3 4.4 24 86-109 69-92 (188)
271 TIGR01111 mtrA N5-methyltetrah 31.0 73 0.0016 23.8 3.4 61 17-77 25-96 (238)
272 PRK10575 iron-hydroxamate tran 30.9 1.3E+02 0.0029 22.3 4.9 40 21-62 168-207 (265)
273 PRK14642 hypothetical protein; 30.9 2.1E+02 0.0046 20.9 7.4 45 6-50 15-69 (197)
274 cd03222 ABC_RNaseL_inhibitor T 30.7 1.7E+02 0.0037 20.6 5.2 39 21-61 92-130 (177)
275 PRK13547 hmuV hemin importer A 30.7 1.3E+02 0.0028 22.7 4.9 40 21-62 175-214 (272)
276 PRK02228 V-type ATP synthase s 30.6 1.5E+02 0.0032 18.9 5.8 49 39-107 30-79 (100)
277 PRK14250 phosphate ABC transpo 30.6 1.4E+02 0.003 21.8 5.0 39 21-61 152-190 (241)
278 cd03299 ABC_ModC_like Archeal 30.5 1.5E+02 0.0032 21.6 5.0 39 21-61 150-188 (235)
279 cd03215 ABC_Carb_Monos_II This 30.4 1.7E+02 0.0037 20.3 5.2 37 21-61 125-161 (182)
280 PRK13540 cytochrome c biogenes 30.3 1.8E+02 0.004 20.5 5.4 48 21-72 148-195 (200)
281 COG1509 KamA Lysine 2,3-aminom 30.2 48 0.0011 26.5 2.5 29 37-65 142-170 (369)
282 cd03292 ABC_FtsE_transporter F 30.2 1.6E+02 0.0034 20.9 5.1 38 21-61 157-194 (214)
283 PRK13642 cbiO cobalt transport 30.2 1.4E+02 0.003 22.4 5.0 40 21-62 161-200 (277)
284 cd03237 ABC_RNaseL_inhibitor_d 30.2 1.4E+02 0.003 22.1 4.9 39 21-61 136-174 (246)
285 cd03278 ABC_SMC_barmotin Barmo 30.1 1.8E+02 0.0039 20.7 5.3 38 21-62 138-175 (197)
286 PRK05333 NAD-dependent deacety 30.0 91 0.002 23.8 4.0 26 33-63 4-29 (285)
287 TIGR02324 CP_lyasePhnL phospho 30.0 1.7E+02 0.0038 20.9 5.3 38 21-61 170-207 (224)
288 PRK10771 thiQ thiamine transpo 29.9 1.5E+02 0.0031 21.5 4.9 39 21-61 150-188 (232)
289 PRK04183 glutamyl-tRNA(Gln) am 29.8 1.9E+02 0.0041 23.7 5.9 29 31-60 131-159 (419)
290 PRK11231 fecE iron-dicitrate t 29.7 1.6E+02 0.0034 21.7 5.1 38 21-61 159-196 (255)
291 COG0541 Ffh Signal recognition 29.6 3.3E+02 0.0071 22.6 7.4 76 20-115 184-259 (451)
292 PF12683 DUF3798: Protein of u 29.6 1.1E+02 0.0024 23.5 4.2 38 19-62 34-71 (275)
293 cd03231 ABC_CcmA_heme_exporter 29.4 1.8E+02 0.0039 20.5 5.3 38 21-61 146-183 (201)
294 PRK13635 cbiO cobalt transport 29.4 1.5E+02 0.0034 22.3 5.1 40 21-62 161-200 (279)
295 PRK13645 cbiO cobalt transport 29.3 1.4E+02 0.003 22.6 4.9 39 21-61 171-209 (289)
296 PRK10419 nikE nickel transport 29.3 1.4E+02 0.003 22.3 4.8 40 21-62 172-211 (268)
297 PRK13539 cytochrome c biogenes 29.3 1.7E+02 0.0037 20.8 5.1 38 21-61 148-185 (207)
298 PRK11866 2-oxoacid ferredoxin 29.2 1.3E+02 0.0029 23.1 4.7 38 32-69 56-93 (279)
299 PRK11186 carboxy-terminal prot 29.1 1.2E+02 0.0026 26.5 4.8 96 17-119 353-458 (667)
300 cd03232 ABC_PDR_domain2 The pl 29.1 1.8E+02 0.0039 20.4 5.2 39 21-62 129-167 (192)
301 PRK10619 histidine/lysine/argi 29.0 1.7E+02 0.0036 21.6 5.2 38 21-61 173-210 (257)
302 TIGR00968 3a0106s01 sulfate AB 29.0 1.7E+02 0.0036 21.3 5.2 39 21-61 151-189 (237)
303 COG1121 ZnuC ABC-type Mn/Zn tr 28.9 1.7E+02 0.0036 22.3 5.1 37 22-61 161-197 (254)
304 cd03269 ABC_putative_ATPase Th 28.9 1.5E+02 0.0034 20.9 4.9 37 21-61 149-185 (210)
305 cd07402 MPP_GpdQ Enterobacter 28.9 1.7E+02 0.0037 21.0 5.2 62 35-111 21-83 (240)
306 cd03131 GATase1_HTS Type 1 glu 28.8 1.4E+02 0.003 21.3 4.4 41 21-63 32-72 (175)
307 PRK13637 cbiO cobalt transport 28.7 1.5E+02 0.0033 22.4 5.0 39 21-61 165-203 (287)
308 TIGR02153 gatD_arch glutamyl-t 28.7 1.8E+02 0.0039 23.7 5.6 30 32-62 119-149 (404)
309 COG4032 Predicted thiamine-pyr 28.6 41 0.0009 23.4 1.6 71 38-108 27-104 (172)
310 KOG0780 Signal recognition par 28.6 2.7E+02 0.0059 23.0 6.4 79 17-116 182-261 (483)
311 PF06935 DUF1284: Protein of u 28.5 1.1E+02 0.0024 19.7 3.6 30 33-62 2-31 (103)
312 KOG3997 Major apurinic/apyrimi 28.2 45 0.00098 25.0 1.9 55 17-74 138-192 (281)
313 TIGR01189 ccmA heme ABC export 28.1 1.9E+02 0.0042 20.3 5.2 39 21-62 148-186 (198)
314 PRK13652 cbiO cobalt transport 28.0 1.6E+02 0.0035 22.1 5.0 39 21-61 158-196 (277)
315 cd03266 ABC_NatA_sodium_export 27.8 1.9E+02 0.0041 20.6 5.2 38 21-61 157-194 (218)
316 PRK13543 cytochrome c biogenes 27.8 2E+02 0.0043 20.5 5.3 38 21-61 158-195 (214)
317 TIGR02314 ABC_MetN D-methionin 27.7 1.5E+02 0.0033 23.3 5.0 40 21-62 161-200 (343)
318 PF00710 Asparaginase: Asparag 27.6 1.9E+02 0.0042 22.4 5.4 29 31-61 52-80 (313)
319 TIGR02770 nickel_nikD nickel i 27.6 1.6E+02 0.0035 21.3 4.8 39 21-61 146-184 (230)
320 cd03240 ABC_Rad50 The catalyti 27.5 2E+02 0.0043 20.6 5.2 41 20-62 141-182 (204)
321 TIGR00685 T6PP trehalose-phosp 27.5 81 0.0018 23.2 3.2 25 39-63 28-52 (244)
322 PRK13636 cbiO cobalt transport 27.5 1.6E+02 0.0035 22.2 5.0 39 21-61 162-200 (283)
323 PF11965 DUF3479: Domain of un 27.4 2.3E+02 0.0049 20.1 5.5 42 87-128 48-94 (164)
324 cd07043 STAS_anti-anti-sigma_f 27.4 1.4E+02 0.0031 17.8 4.3 44 17-66 7-51 (99)
325 PRK14558 pyrH uridylate kinase 27.4 1.1E+02 0.0024 22.4 3.9 33 31-64 18-50 (231)
326 cd00267 ABC_ATPase ABC (ATP-bi 27.4 2E+02 0.0043 19.3 5.2 37 21-60 101-137 (157)
327 PRK09580 sufC cysteine desulfu 27.3 1.9E+02 0.0041 21.0 5.2 37 21-61 166-202 (248)
328 PF07859 Abhydrolase_3: alpha/ 27.3 52 0.0011 23.1 2.1 36 34-73 45-85 (211)
329 PRK09544 znuC high-affinity zi 27.3 1.7E+02 0.0037 21.7 5.0 39 21-61 141-179 (251)
330 PRK10418 nikD nickel transport 27.3 1.8E+02 0.0039 21.4 5.1 39 21-61 161-199 (254)
331 TIGR02832 spo_yunB sporulation 27.3 34 0.00074 25.1 1.1 43 7-50 64-107 (204)
332 cd03268 ABC_BcrA_bacitracin_re 27.3 1.8E+02 0.0038 20.6 4.9 37 21-61 147-183 (208)
333 cd03263 ABC_subfamily_A The AB 27.2 2E+02 0.0044 20.5 5.2 37 21-62 154-190 (220)
334 PRK03695 vitamin B12-transport 27.2 1.9E+02 0.0041 21.3 5.2 37 21-60 154-190 (248)
335 PRK13548 hmuV hemin importer A 27.2 1.6E+02 0.0036 21.8 4.9 39 20-60 160-198 (258)
336 TIGR01978 sufC FeS assembly AT 27.1 1.9E+02 0.0042 20.9 5.2 38 21-61 165-202 (243)
337 cd03279 ABC_sbcCD SbcCD and ot 26.9 2.1E+02 0.0045 20.5 5.3 39 20-61 153-191 (213)
338 KOG0333 U5 snRNP-like RNA heli 26.7 49 0.0011 28.2 2.0 32 98-129 350-382 (673)
339 cd03294 ABC_Pro_Gly_Bertaine T 26.6 1.8E+02 0.0039 21.7 5.0 39 21-61 181-219 (269)
340 TIGR02982 heterocyst_DevA ABC 26.6 1.8E+02 0.0038 20.9 4.9 39 21-61 162-200 (220)
341 PRK13538 cytochrome c biogenes 26.5 2.1E+02 0.0045 20.2 5.2 38 21-61 150-187 (204)
342 cd03245 ABCC_bacteriocin_expor 26.4 1.9E+02 0.0042 20.6 5.0 37 21-62 161-197 (220)
343 KOG3425 Uncharacterized conser 26.3 1.4E+02 0.0031 20.1 3.8 35 33-68 7-46 (128)
344 PRK11614 livF leucine/isoleuci 26.3 2E+02 0.0043 20.8 5.1 37 21-61 158-194 (237)
345 PRK05778 2-oxoglutarate ferred 26.3 1.8E+02 0.004 22.6 5.1 34 36-69 71-104 (301)
346 cd04236 AAK_NAGS-Urea AAK_NAGS 26.2 1.7E+02 0.0037 22.4 4.8 43 17-64 35-78 (271)
347 TIGR02769 nickel_nikE nickel i 26.2 1.7E+02 0.0038 21.7 4.9 39 21-61 171-209 (265)
348 PRK14258 phosphate ABC transpo 26.2 1.9E+02 0.0041 21.4 5.1 39 21-61 171-209 (261)
349 cd03224 ABC_TM1139_LivF_branch 26.2 2.1E+02 0.0045 20.4 5.1 37 21-61 153-189 (222)
350 COG1122 CbiO ABC-type cobalt t 26.1 2.4E+02 0.0051 21.0 5.5 40 21-62 159-198 (235)
351 cd03219 ABC_Mj1267_LivG_branch 26.0 2.1E+02 0.0045 20.6 5.2 38 21-61 164-201 (236)
352 TIGR02673 FtsE cell division A 25.9 2.1E+02 0.0045 20.3 5.1 38 21-61 158-195 (214)
353 PRK15079 oligopeptide ABC tran 25.8 1.7E+02 0.0037 22.9 4.9 40 21-62 182-221 (331)
354 PRK11432 fbpC ferric transport 25.8 1.6E+02 0.0035 23.2 4.8 40 21-62 157-196 (351)
355 PRK13640 cbiO cobalt transport 25.7 1.8E+02 0.004 21.9 5.0 39 21-61 164-202 (282)
356 TIGR03113 exosortase_2 exosort 25.7 85 0.0018 24.0 3.1 40 106-145 137-176 (268)
357 PRK11264 putative amino-acid A 25.6 2.1E+02 0.0046 20.9 5.2 38 21-61 165-202 (250)
358 PRK12404 stage V sporulation p 25.5 56 0.0012 25.9 2.1 45 97-142 98-150 (334)
359 PF01738 DLH: Dienelactone hyd 25.5 1.2E+02 0.0027 21.5 3.8 34 89-122 84-119 (218)
360 TIGR03109 exosortase_1 exosort 25.4 86 0.0019 23.9 3.1 42 104-145 137-178 (267)
361 smart00245 TSPc tail specific 25.4 1.4E+02 0.0031 21.1 4.1 96 17-119 28-133 (192)
362 PRK13650 cbiO cobalt transport 25.3 1.9E+02 0.0042 21.7 5.0 40 21-62 161-200 (279)
363 cd03260 ABC_PstB_phosphate_tra 25.3 2.2E+02 0.0048 20.4 5.2 36 21-61 162-197 (227)
364 COG1118 CysA ABC-type sulfate/ 25.2 1.4E+02 0.003 23.7 4.1 38 22-61 159-196 (345)
365 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 25.2 2.2E+02 0.0048 20.6 5.2 37 21-61 163-199 (224)
366 TIGR02142 modC_ABC molybdenum 25.1 1.9E+02 0.0041 22.7 5.1 39 21-61 152-190 (354)
367 cd07393 MPP_DR1119 Deinococcus 25.0 2.8E+02 0.006 20.2 6.9 32 29-62 16-50 (232)
368 PRK00742 chemotaxis-specific m 24.9 3.2E+02 0.007 21.2 6.4 55 7-64 240-294 (354)
369 COG3840 ThiQ ABC-type thiamine 24.8 1.7E+02 0.0037 21.6 4.3 39 22-62 151-189 (231)
370 cd03238 ABC_UvrA The excision 24.8 2.4E+02 0.0052 19.8 5.1 38 21-61 110-147 (176)
371 cd03264 ABC_drug_resistance_li 24.8 2.1E+02 0.0046 20.2 5.0 36 21-61 151-186 (211)
372 PRK13649 cbiO cobalt transport 24.7 2.1E+02 0.0046 21.4 5.1 38 21-61 166-203 (280)
373 cd03262 ABC_HisP_GlnQ_permease 24.7 2.3E+02 0.005 20.0 5.1 38 21-61 156-193 (213)
374 TIGR03740 galliderm_ABC gallid 24.7 2.2E+02 0.0048 20.4 5.1 38 21-62 145-182 (223)
375 PRK09473 oppD oligopeptide tra 24.7 1.8E+02 0.004 22.6 4.9 40 21-62 182-221 (330)
376 cd03253 ABCC_ATM1_transporter 24.6 2.2E+02 0.0048 20.5 5.1 37 21-61 158-194 (236)
377 cd03218 ABC_YhbG The ABC trans 24.5 2.3E+02 0.005 20.3 5.2 38 21-61 154-191 (232)
378 PRK15056 manganese/iron transp 24.5 2.2E+02 0.0047 21.3 5.1 38 21-61 163-200 (272)
379 TIGR01187 potA spermidine/putr 24.5 1.9E+02 0.0042 22.4 4.9 39 21-61 121-159 (325)
380 PF06110 DUF953: Eukaryotic pr 24.4 1.3E+02 0.0029 19.9 3.5 31 38-68 5-39 (119)
381 PRK05665 amidotransferase; Pro 24.4 1.7E+02 0.0036 21.8 4.4 24 85-108 78-101 (240)
382 cd03217 ABC_FeS_Assembly ABC-t 24.4 2.5E+02 0.0053 19.8 5.2 37 21-61 125-161 (200)
383 COG0412 Dienelactone hydrolase 24.4 97 0.0021 22.9 3.2 33 90-122 99-133 (236)
384 PF14283 DUF4366: Domain of un 24.3 2.4E+02 0.0053 20.9 5.2 25 5-29 71-95 (218)
385 COG2840 Uncharacterized protei 24.2 1.7E+02 0.0036 21.2 4.2 35 35-71 107-141 (184)
386 PRK11144 modC molybdate transp 24.1 1.9E+02 0.0042 22.7 4.9 40 21-62 149-188 (352)
387 PRK13647 cbiO cobalt transport 24.1 2.3E+02 0.0049 21.3 5.2 38 21-61 159-196 (274)
388 TIGR03269 met_CoM_red_A2 methy 24.0 1.8E+02 0.0039 24.1 5.0 40 21-62 189-228 (520)
389 PRK13648 cbiO cobalt transport 23.9 2.2E+02 0.0047 21.2 5.0 40 21-62 163-202 (269)
390 PF14532 Sigma54_activ_2: Sigm 23.8 2.2E+02 0.0048 18.7 5.4 37 21-61 72-108 (138)
391 PRK11124 artP arginine transpo 23.8 2.3E+02 0.0051 20.5 5.1 38 21-61 162-199 (242)
392 KOG2684 Sirtuin 5 and related 23.8 1.1E+02 0.0023 25.1 3.3 28 38-70 78-105 (412)
393 TIGR01001 metA homoserine O-su 23.6 2.3E+02 0.005 22.2 5.1 43 19-63 67-109 (300)
394 PRK10851 sulfate/thiosulfate t 23.6 2.3E+02 0.005 22.4 5.3 40 21-62 157-196 (353)
395 PRK11153 metN DL-methionine tr 23.6 2.1E+02 0.0046 22.4 5.0 39 21-61 161-199 (343)
396 cd04239 AAK_UMPK-like AAK_UMPK 23.4 1.5E+02 0.0032 21.7 4.0 32 32-64 17-48 (229)
397 KOG1447 GTP-specific succinyl- 23.4 1.4E+02 0.0031 23.3 3.8 42 21-62 301-345 (412)
398 PLN03037 lipase class 3 family 23.3 61 0.0013 27.3 2.0 25 100-124 317-341 (525)
399 COG3800 Predicted transcriptio 23.3 34 0.00073 26.8 0.5 36 108-144 262-297 (332)
400 cd02974 AhpF_NTD_N Alkyl hydro 23.2 2E+02 0.0044 18.1 4.4 28 33-62 2-29 (94)
401 PRK13643 cbiO cobalt transport 23.2 2.4E+02 0.0051 21.4 5.1 38 21-61 165-202 (288)
402 cd00844 MPP_Dbr1_N Dbr1 RNA la 23.1 1.6E+02 0.0034 22.4 4.1 68 39-107 12-81 (262)
403 KOG2567 Uncharacterized conser 23.1 1.4E+02 0.0031 21.2 3.5 31 46-76 37-67 (179)
404 TIGR03873 F420-0_ABC_ATP propo 23.1 2.4E+02 0.0052 20.7 5.1 37 21-61 158-194 (256)
405 CHL00131 ycf16 sulfate ABC tra 23.1 2.6E+02 0.0055 20.4 5.2 38 21-61 172-209 (252)
406 PF01764 Lipase_3: Lipase (cla 23.0 76 0.0017 20.6 2.2 29 93-122 57-85 (140)
407 PRK11022 dppD dipeptide transp 22.9 2.2E+02 0.0047 22.1 5.0 40 21-62 174-213 (326)
408 KOG3985 Methylthioadenosine ph 22.9 2.2E+02 0.0047 21.6 4.6 51 17-72 133-183 (283)
409 PRK13641 cbiO cobalt transport 22.8 2.5E+02 0.0053 21.2 5.2 38 21-61 166-203 (287)
410 cd04254 AAK_UMPK-PyrH-Ec UMP k 22.8 1.8E+02 0.0038 21.3 4.3 35 31-66 18-52 (231)
411 PRK13537 nodulation ABC transp 22.8 2.2E+02 0.0048 21.8 5.0 37 21-61 159-195 (306)
412 PRK09493 glnQ glutamine ABC tr 22.6 2.6E+02 0.0057 20.2 5.2 38 21-61 157-194 (240)
413 PLN00060 meiotic recombination 22.6 2.3E+02 0.0049 23.0 5.0 26 88-113 251-278 (384)
414 TIGR00225 prc C-terminal pepti 22.5 2.2E+02 0.0048 22.1 5.0 95 18-119 152-255 (334)
415 PRK11650 ugpC glycerol-3-phosp 22.5 2.2E+02 0.0047 22.6 4.9 40 21-62 155-194 (356)
416 cd03275 ABC_SMC1_euk Eukaryoti 22.3 2.7E+02 0.0059 20.4 5.3 39 21-62 180-218 (247)
417 PRK03957 V-type ATP synthase s 22.3 1.3E+02 0.0028 19.2 3.0 23 39-61 30-52 (100)
418 PRK11867 2-oxoglutarate ferred 22.3 3.1E+02 0.0066 21.1 5.6 35 35-69 69-103 (286)
419 TIGR03258 PhnT 2-aminoethylpho 22.2 2.2E+02 0.0048 22.6 4.9 40 21-62 158-198 (362)
420 PF05763 DUF835: Protein of un 22.1 2.2E+02 0.0047 19.3 4.3 41 21-61 43-83 (136)
421 cd03248 ABCC_TAP TAP, the Tran 22.1 2.9E+02 0.0063 19.7 5.3 28 21-50 171-198 (226)
422 PRK15134 microcin C ABC transp 22.1 1.9E+02 0.0041 24.0 4.7 40 21-62 177-216 (529)
423 PRK13639 cbiO cobalt transport 22.0 2.6E+02 0.0057 20.9 5.2 39 21-62 158-196 (275)
424 PRK14251 phosphate ABC transpo 22.0 2.7E+02 0.0058 20.3 5.2 37 21-61 168-204 (251)
425 PRK08250 glutamine amidotransf 21.8 1.7E+02 0.0037 21.6 4.1 22 87-108 73-94 (235)
426 TIGR01854 lipid_A_lpxH UDP-2,3 21.8 3.2E+02 0.007 19.8 9.5 100 35-143 14-113 (231)
427 TIGR03771 anch_rpt_ABC anchore 21.8 2.6E+02 0.0056 20.1 5.0 38 21-61 134-171 (223)
428 COG4598 HisP ABC-type histidin 21.7 3E+02 0.0065 20.4 5.0 38 21-61 173-210 (256)
429 TIGR03522 GldA_ABC_ATP gliding 21.7 2.6E+02 0.0056 21.3 5.1 37 21-62 154-190 (301)
430 PF08436 DXP_redisom_C: 1-deox 21.7 1.1E+02 0.0025 19.1 2.5 27 40-67 10-36 (84)
431 PLN00049 carboxyl-terminal pro 21.7 1.8E+02 0.0039 23.3 4.4 95 17-118 194-299 (389)
432 COG4981 Enoyl reductase domain 21.7 1.3E+02 0.0027 25.9 3.5 91 33-141 156-251 (717)
433 TIGR03411 urea_trans_UrtD urea 21.7 2.9E+02 0.0063 20.0 5.2 37 21-62 164-200 (242)
434 PRK14255 phosphate ABC transpo 21.6 2.7E+02 0.0059 20.3 5.1 37 21-61 169-205 (252)
435 PRK11308 dppF dipeptide transp 21.5 2.3E+02 0.0049 22.1 4.8 40 21-62 175-214 (327)
436 PRK13638 cbiO cobalt transport 21.4 2.7E+02 0.0058 20.7 5.1 38 21-61 157-194 (271)
437 PF00763 THF_DHG_CYH: Tetrahyd 21.4 91 0.002 20.4 2.2 24 39-62 73-96 (117)
438 PRK11000 maltose/maltodextrin 21.3 2.1E+02 0.0045 22.7 4.6 40 21-62 154-193 (369)
439 cd07367 CarBb CarBb is the B s 21.2 3.7E+02 0.008 20.3 5.8 45 18-63 133-180 (268)
440 TIGR03269 met_CoM_red_A2 methy 21.2 2.2E+02 0.0047 23.6 4.9 39 21-61 448-486 (520)
441 COG0846 SIR2 NAD-dependent pro 21.0 1.3E+02 0.0028 22.8 3.3 26 39-69 3-28 (250)
442 PRK13651 cobalt transporter AT 20.8 2.8E+02 0.0062 21.3 5.2 39 21-62 186-224 (305)
443 COG1830 FbaB DhnA-type fructos 20.8 4E+02 0.0086 20.5 6.3 72 34-105 125-209 (265)
444 PRK00358 pyrH uridylate kinase 20.7 2.1E+02 0.0045 20.9 4.3 31 32-63 19-49 (231)
445 TIGR02579 cas_csx3 CRISPR-asso 20.6 1.6E+02 0.0034 18.4 3.0 49 33-106 12-60 (83)
446 TIGR01188 drrA daunorubicin re 20.6 2.6E+02 0.0056 21.3 4.9 37 21-61 145-181 (302)
447 PRK14247 phosphate ABC transpo 20.6 3.1E+02 0.0067 20.0 5.2 36 21-61 167-202 (250)
448 PRK10187 trehalose-6-phosphate 20.5 1.2E+02 0.0027 22.8 3.1 25 39-63 39-63 (266)
449 PRK09452 potA putrescine/sperm 20.5 2.6E+02 0.0057 22.3 5.1 40 21-62 165-204 (375)
450 PRK03195 hypothetical protein; 20.4 1.5E+02 0.0032 21.5 3.3 49 17-69 120-172 (186)
451 COG4555 NatA ABC-type Na+ tran 20.3 3.3E+02 0.0072 20.5 5.1 38 21-62 154-191 (245)
452 cd06844 STAS Sulphate Transpor 20.3 2.3E+02 0.0049 17.5 5.0 45 13-63 4-48 (100)
453 TIGR03820 lys_2_3_AblA lysine- 20.3 1.2E+02 0.0026 24.9 3.1 28 38-65 140-167 (417)
454 COG0669 CoaD Phosphopantethein 20.3 3.2E+02 0.007 19.3 5.6 43 17-61 30-72 (159)
455 TIGR03790 conserved hypothetic 20.2 3.5E+02 0.0075 21.4 5.5 43 17-61 30-84 (316)
456 PF08747 DUF1788: Domain of un 20.1 1.5E+02 0.0033 19.8 3.1 56 40-111 48-105 (126)
No 1
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2e-39 Score=244.86 Aligned_cols=143 Identities=76% Similarity=1.111 Sum_probs=127.0
Q ss_pred CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc
Q 032207 1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK 80 (145)
Q Consensus 1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~ 80 (145)
|+++.+++.+.++..+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.....
T Consensus 2 ~~~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~ 81 (265)
T PLN02888 2 MTQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK 81 (265)
T ss_pred ccccCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc
Confidence 78889999999997448999999999999999999999999999999999999999999999999999999998653222
Q ss_pred cCcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 81 GDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
........+.+..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus 82 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~ 144 (265)
T PLN02888 82 GDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPS 144 (265)
T ss_pred chhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCC
Confidence 221222345677889999999999999999999999999999999999999999999999875
No 2
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=3.7e-39 Score=244.52 Aligned_cols=143 Identities=24% Similarity=0.398 Sum_probs=126.0
Q ss_pred CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc
Q 032207 1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK 80 (145)
Q Consensus 1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~ 80 (145)
|++-..++.+.++++ ++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.....
T Consensus 1 ~~~~~~~~~i~~~~~-~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~ 79 (275)
T PRK09120 1 MSYENRWDTVKVEVE-DGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETD 79 (275)
T ss_pred CCcccccccEEEEEE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccc
Confidence 777777899999997 8999999999999999999999999999999999999999999999999999999998643221
Q ss_pred cC-c------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 81 GD-V------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 81 ~~-~------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.. . ....++++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 150 (275)
T PRK09120 80 AQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGG 150 (275)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCc
Confidence 11 0 1123456778899999999999999999999999999999999999999999999988763
No 3
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-38 Score=240.88 Aligned_cols=139 Identities=22% Similarity=0.374 Sum_probs=121.9
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD--- 82 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~--- 82 (145)
+++.+.++.++++|++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.......
T Consensus 3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 82 (265)
T PRK05674 3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNT 82 (265)
T ss_pred CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchh
Confidence 47789999854789999999999999999999999999999999999999999999999999999999875321111
Q ss_pred ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~ 147 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAV 147 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcch
Confidence 01223566778999999999999999999999999999999999999999999999998763
No 4
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-38 Score=238.95 Aligned_cols=141 Identities=24% Similarity=0.473 Sum_probs=122.8
Q ss_pred CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-
Q 032207 4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD- 82 (145)
Q Consensus 4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~- 82 (145)
..+++.+.++..+++|++|+||||+++|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|.|++++.......
T Consensus 3 ~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 82 (261)
T PRK08138 3 STATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEM 82 (261)
T ss_pred CCCCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHH
Confidence 3456667888755889999999999999999999999999999999999999999999999999999999875422111
Q ss_pred cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.....++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 144 (261)
T PRK08138 83 YLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGA 144 (261)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCC
Confidence 12234567788999999999999999999999999999999999999999999999988764
No 5
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-38 Score=238.78 Aligned_cols=137 Identities=30% Similarity=0.445 Sum_probs=120.0
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC---
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD--- 82 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~--- 82 (145)
+.++.++..+++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|.|++++.......
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 84 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEA 84 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHH
Confidence 455788866688999999999999999999999999999999999999999999998 7999999999875422111
Q ss_pred cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
....+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+|++
T Consensus 85 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~ 145 (256)
T PRK06143 85 FISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSV 145 (256)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCc
Confidence 1123356678899999999999999999999999999999999999999999999999764
No 6
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-38 Score=240.83 Aligned_cols=139 Identities=29% Similarity=0.484 Sum_probs=121.5
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc----
Q 032207 5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK---- 80 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~---- 80 (145)
+.++.+.++++ ++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.....
T Consensus 3 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06142 3 TTYESFTVELA-DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGK 81 (272)
T ss_pred CCcceEEEEec-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccc
Confidence 35677999986 9999999999999999999999999999999999999999999999999999999998754210
Q ss_pred ---cC----c---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 81 ---GD----V---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 81 ---~~----~---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.. . ...+++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~ 155 (272)
T PRK06142 82 DGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADV 155 (272)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCc
Confidence 00 0 1123456678899999999999999999999999999999999999999999999988763
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-38 Score=237.25 Aligned_cols=137 Identities=32% Similarity=0.538 Sum_probs=120.3
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-Cccc
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKD 85 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~ 85 (145)
++.+.++++ ++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||+|.|+.||+|.|++++...... ....
T Consensus 3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (257)
T PRK05862 3 YETILVETR-GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKG 81 (257)
T ss_pred CceEEEEee-CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHH
Confidence 356888886 89999999999999999999999999999999999999999999999999999999987542211 1112
Q ss_pred HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.+.+.+.+|..+|||+||++||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus 82 ~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~ 140 (257)
T PRK05862 82 DYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGM 140 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCc
Confidence 33456778999999999999999999999999999999999999999999999988763
No 8
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-38 Score=237.01 Aligned_cols=137 Identities=31% Similarity=0.529 Sum_probs=120.8
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---C-
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---D- 82 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~- 82 (145)
++.+.++.+ ++|++||||||+++|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++...... .
T Consensus 3 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (262)
T PRK05995 3 YETLEIEQR-GQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN 81 (262)
T ss_pred CceEEEEee-CCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence 566888886 89999999999999999999999999999999999999999999999999999999987432111 1
Q ss_pred c--ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 V--KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ~--~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
. ...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 145 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPAT 145 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccc
Confidence 1 1234567788999999999999999999999999999999999999999999999987753
No 9
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-38 Score=236.24 Aligned_cols=134 Identities=31% Similarity=0.479 Sum_probs=118.6
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHH
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETD 89 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 89 (145)
+.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++.........+.+.+
T Consensus 2 i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06072 2 IKVESR-EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYP 80 (248)
T ss_pred eEEEEE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHH
Confidence 466776 8999999999999999999999999999999999999999999999999999999998754221122233456
Q ss_pred HHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 90 TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 90 ~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~ 135 (248)
T PRK06072 81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDT 135 (248)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCc
Confidence 7778999999999999999999999999999999999999999999999988753
No 10
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-38 Score=235.75 Aligned_cols=134 Identities=28% Similarity=0.455 Sum_probs=118.9
Q ss_pred cEEEEEcCC---cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cc
Q 032207 9 LILVTRDPM---GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DV 83 (145)
Q Consensus 9 ~i~~~~~~~---~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~ 83 (145)
.+.++++ + +|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... ..
T Consensus 4 ~i~~~~~-~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (251)
T PRK06023 4 HILVERP-GAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSF 82 (251)
T ss_pred eEEEEee-cCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhh
Confidence 5888886 5 4999999999999999999999999999999999999999999999999999999987542111 11
Q ss_pred ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
....++++.++.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|+.|+
T Consensus 83 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~ 142 (251)
T PRK06023 83 GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPE 142 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCC
Confidence 233456778899999999999999999999999999999999999999999999998765
No 11
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-38 Score=236.01 Aligned_cols=135 Identities=31% Similarity=0.456 Sum_probs=119.2
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---ccc
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---VKD 85 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---~~~ 85 (145)
.+.++.+ ++|++|+||||+++|++|.+|+++|.++++.+++|+++|+|||+|.|++||+|.|++++....... ...
T Consensus 4 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK05870 4 PVLLDVD-DGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLR 82 (249)
T ss_pred cEEEEcc-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHH
Confidence 4777876 899999999999999999999999999999999999999999999999999999999876432211 112
Q ss_pred HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.+.+.+..+.++|||+||++||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus 83 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~ 141 (249)
T PRK05870 83 RIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGG 141 (249)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCC
Confidence 33455677889999999999999999999999999999999999999999999998763
No 12
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.1e-38 Score=238.26 Aligned_cols=137 Identities=35% Similarity=0.572 Sum_probs=121.7
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhh-hccc---
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED-VFKG--- 81 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~-~~~~--- 81 (145)
.+..+.++.. ++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.. ....
T Consensus 3 ~~~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 3 TYETILVERE-DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCCeeEEEee-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence 4567888886 7799999999999999999999999999999999999999999999999999999999874 1111
Q ss_pred CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 82 DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
......++++.++.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.||
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg 143 (257)
T COG1024 82 NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPG 143 (257)
T ss_pred HHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCC
Confidence 11223345788999999999999999999999999999999999999999999999999885
No 13
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-38 Score=236.28 Aligned_cols=137 Identities=36% Similarity=0.585 Sum_probs=122.0
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-ccc
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-VKD 85 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-~~~ 85 (145)
++.+.++.+ ++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++....... ...
T Consensus 3 ~~~v~~~~~-~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 81 (258)
T PRK06190 3 EPILLVETH-DRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQD 81 (258)
T ss_pred CceEEEEee-CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHH
Confidence 567888987 899999999999999999999999999999999999999999999999999999999875422111 112
Q ss_pred HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
..++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 82 ~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~ 140 (258)
T PRK06190 82 ALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGW 140 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCc
Confidence 34567788999999999999999999999999999999999999999999999988874
No 14
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-38 Score=237.43 Aligned_cols=142 Identities=32% Similarity=0.472 Sum_probs=124.3
Q ss_pred CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhc
Q 032207 1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVF 79 (145)
Q Consensus 1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~ 79 (145)
|.-+..++.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.| ++||+|.|++++....
T Consensus 1 ~~~~~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~ 79 (262)
T PRK06144 1 MAMTTSTDELLLEVR-GGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS 79 (262)
T ss_pred CCcccCCCceEEEee-CCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc
Confidence 555667788999987 89999999999999999999999999999999999999999999998 7999999999875422
Q ss_pred ccC----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecccee-eeecCC
Q 032207 80 KGD----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHAR-LVCKIS 143 (145)
Q Consensus 80 ~~~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~-~G~~~g 143 (145)
... ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||++ +|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~ 148 (262)
T PRK06144 80 TAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLS 148 (262)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCC
Confidence 111 1123456677889999999999999999999999999999999999999999997 888765
No 15
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=5.8e-38 Score=235.82 Aligned_cols=137 Identities=26% Similarity=0.493 Sum_probs=118.8
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC--c
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD--V 83 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~--~ 83 (145)
++.+.++++ ++|++||||||+++|++|.+|+++|.+++++++.|+++|+|||+|.| ++||+|.|++++....... .
T Consensus 1 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 79 (256)
T TIGR03210 1 YEDILYEKR-NGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTI 79 (256)
T ss_pred CCceEEEee-CCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHH
Confidence 356888886 89999999999999999999999999999999999999999999998 7999999999874321111 1
Q ss_pred ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeee-cCCC
Q 032207 84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVC-KISC 144 (145)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~-~~g~ 144 (145)
.....+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+ |+++
T Consensus 80 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~ 141 (256)
T TIGR03210 80 GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGY 141 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCcc
Confidence 122355778899999999999999999999999999999999999999999999985 4543
No 16
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-38 Score=236.10 Aligned_cols=138 Identities=32% Similarity=0.458 Sum_probs=123.3
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cc
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DV 83 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~ 83 (145)
..+.+.++++ ++|++|+||||++.|++|.+++++|.++++.+++|+++|+|||+|.|++||+|.|++++...... ..
T Consensus 3 ~~~~i~~~~~-~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (259)
T PRK06688 3 MVTDLLVELE-DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDE 81 (259)
T ss_pred CCCceEEEEE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHH
Confidence 4566888887 89999999999999999999999999999999999999999999999999999999987643222 12
Q ss_pred ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
...++++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 82 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~ 142 (259)
T PRK06688 82 LAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDA 142 (259)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCc
Confidence 2345677888999999999999999999999999999999999999999999999998763
No 17
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.9e-38 Score=236.56 Aligned_cols=138 Identities=28% Similarity=0.467 Sum_probs=121.4
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc--
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV-- 83 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~-- 83 (145)
..+.+.++.+ ++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|.|++++........
T Consensus 9 ~~~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 87 (266)
T PRK08139 9 EAPLLLREDR-DGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR 87 (266)
T ss_pred cCCceEEEee-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence 4678888886 9999999999999999999999999999999999999999999999999999999998753221111
Q ss_pred --ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 --KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 --~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++++.
T Consensus 88 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 150 (266)
T PRK08139 88 ALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCST 150 (266)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCc
Confidence 1223456778999999999999999999999999999999999999999999999987653
No 18
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-38 Score=237.06 Aligned_cols=139 Identities=34% Similarity=0.525 Sum_probs=121.3
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207 5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-- 82 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-- 82 (145)
..++.+.+++++++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.......
T Consensus 8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 87 (268)
T PRK07327 8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEV 87 (268)
T ss_pred CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHH
Confidence 456789998854789999999999999999999999999999999999999999999999999999999875421111
Q ss_pred ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
......+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus 88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~ 151 (268)
T PRK07327 88 RARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAG 151 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCC
Confidence 1112345677889999999999999999999999999999999999999999999998764
No 19
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=6.2e-38 Score=235.54 Aligned_cols=134 Identities=27% Similarity=0.501 Sum_probs=118.4
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-CcccHH
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKDVE 87 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~~~ 87 (145)
.+.++++ ++|++||||||+++|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... ......
T Consensus 3 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK09674 3 ELLVSRQ-QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPR 81 (255)
T ss_pred eEEEEeE-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHH
Confidence 5677776 89999999999999999999999999999999999999999999999999999999986532111 111233
Q ss_pred HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
.++++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus 82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~ 137 (255)
T PRK09674 82 PQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPG 137 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCC
Confidence 55678899999999999999999999999999999999999999999999998765
No 20
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.1e-38 Score=235.77 Aligned_cols=135 Identities=30% Similarity=0.466 Sum_probs=119.8
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc------C
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG------D 82 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~------~ 82 (145)
.+.++++ ++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++...... .
T Consensus 4 ~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (260)
T PRK07511 4 ELLSRRE-GSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAA 82 (260)
T ss_pred eeEEEeE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHH
Confidence 4778876 89999999999999999999999999999999999999999999999999999999987542111 1
Q ss_pred cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
....+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus 83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~ 144 (260)
T PRK07511 83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDG 144 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCc
Confidence 12234567788999999999999999999999999999999999999999999999998764
No 21
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-37 Score=234.92 Aligned_cols=137 Identities=32% Similarity=0.506 Sum_probs=119.4
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC----
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---- 82 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---- 82 (145)
++.+.+++++++|++|+||||+++|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++.......
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR 82 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence 4568888754689999999999999999999999999999999999999999999999999999999865321111
Q ss_pred --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
....+.++++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~ 145 (262)
T PRK07468 83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPA 145 (262)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcc
Confidence 1122345678899999999999999999999999999999999999999999999998765
No 22
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-38 Score=234.89 Aligned_cols=135 Identities=27% Similarity=0.439 Sum_probs=118.5
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---c
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---V 83 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---~ 83 (145)
++.|.++++ ++|++|+||||++.|++|.+|+++|.+++++++ +++|+|||||.|++||+|.|++++....... .
T Consensus 1 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 77 (255)
T PRK08150 1 PSLVSYELD-GGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHH 77 (255)
T ss_pred CceEEEEee-CCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHH
Confidence 356888886 899999999999999999999999999999997 7899999999999999999999875422111 1
Q ss_pred ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
...+++++.+|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++++.
T Consensus 78 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~ 138 (255)
T PRK08150 78 SRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGG 138 (255)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCc
Confidence 2234567788999999999999999999999999999999999999999999999987753
No 23
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-38 Score=236.38 Aligned_cols=134 Identities=31% Similarity=0.509 Sum_probs=117.9
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--C---
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG--D--- 82 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~--~--- 82 (145)
.+.++.+ ++|++|+||||+++|++|.+|+++|.++++.+++|+++|+|||||.| ++||+|.|++++...... .
T Consensus 4 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 4 TVLIEIR-DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred eEEEEEE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 5888886 99999999999999999999999999999999999999999999998 799999999987542211 0
Q ss_pred --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
.....++++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~ 145 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPT 145 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCC
Confidence 1112245677889999999999999999999999999999999999999999999998775
No 24
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-37 Score=235.06 Aligned_cols=139 Identities=33% Similarity=0.464 Sum_probs=118.8
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-Cc
Q 032207 5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DV 83 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~ 83 (145)
..++.+.++++ ++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++...... ..
T Consensus 2 ~~~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 80 (263)
T PRK07799 2 EGGPHALVEQR-GHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSF 80 (263)
T ss_pred CCCceEEEEEE-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchh
Confidence 45677899987 89999999999999999999999999999999999999999999999999999999987643211 10
Q ss_pred cc---HHH--HHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 KD---VET--DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 ~~---~~~--~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.. ... ..+.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 146 (263)
T PRK07799 81 KDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMG 146 (263)
T ss_pred hhhhhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCc
Confidence 10 011 12345678999999999999999999999999999999999999999999987653
No 25
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.5e-38 Score=235.66 Aligned_cols=140 Identities=27% Similarity=0.438 Sum_probs=122.5
Q ss_pred CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhc-ccC
Q 032207 4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVF-KGD 82 (145)
Q Consensus 4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~-~~~ 82 (145)
+..+..+.++.+ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... ...
T Consensus 2 ~~~~~~i~~~~~-~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 80 (260)
T PRK07827 2 TPVDTLVRYAVD-GGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPY 80 (260)
T ss_pred CCCCcceEEEee-CCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCch
Confidence 345667888886 899999999999999999999999999999999999999999999999999999999875421 111
Q ss_pred -----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 -----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 -----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
....+.++++++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 147 (260)
T PRK07827 81 DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAI 147 (260)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCc
Confidence 11233566788999999999999999999999999999999999999999999999988763
No 26
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-37 Score=233.77 Aligned_cols=136 Identities=31% Similarity=0.446 Sum_probs=116.9
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC-cc
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD-VK 84 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~-~~ 84 (145)
++.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.| ++||+|.|++++....... ..
T Consensus 3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 81 (259)
T PRK06494 3 LPFSTVERK-GHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPE 81 (259)
T ss_pred CceeEEEeE-CCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhh
Confidence 467888886 89999999999999999999999999999999999999999999998 7999999999865422111 11
Q ss_pred cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
..+.. +..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus 82 ~~~~~-~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 140 (259)
T PRK06494 82 SGFGG-LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALA 140 (259)
T ss_pred HHHHH-HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCc
Confidence 12222 334568999999999999999999999999999999999999999999988764
No 27
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-37 Score=233.31 Aligned_cols=135 Identities=23% Similarity=0.392 Sum_probs=119.4
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-Cc---
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DV--- 83 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~--- 83 (145)
+++.++.+ ++|++|+||||++.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++...... ..
T Consensus 2 ~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 2 EHIIYEVE-DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CceEEEEE-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 46788886 89999999999999999999999999999999999999999999999999999999987542211 11
Q ss_pred ---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 84 ---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 84 ---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
.+..++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~ 143 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPD 143 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCC
Confidence 112355677899999999999999999999999999999999999999999999998765
No 28
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-37 Score=235.76 Aligned_cols=140 Identities=31% Similarity=0.465 Sum_probs=120.8
Q ss_pred CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc--
Q 032207 3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-- 80 (145)
Q Consensus 3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-- 80 (145)
+-++.+.+.++..+++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++.....
T Consensus 4 ~~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~ 83 (276)
T PRK05864 4 YRSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVE 83 (276)
T ss_pred CCCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccc
Confidence 345677788887338999999999999999999999999999999999999999999999999999999998642110
Q ss_pred ----cC----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207 81 ----GD----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI 142 (145)
Q Consensus 81 ----~~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~ 142 (145)
.. .....++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p 153 (276)
T PRK05864 84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTA 153 (276)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCC
Confidence 00 011234566788899999999999999999999999999999999999999999999875
No 29
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-37 Score=238.76 Aligned_cols=139 Identities=27% Similarity=0.400 Sum_probs=121.6
Q ss_pred CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC
Q 032207 3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD 82 (145)
Q Consensus 3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~ 82 (145)
.+.+++.+.++.+ ++|++|+||||+++|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.......
T Consensus 5 ~~~~~~~v~~e~~-~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~ 83 (302)
T PRK08272 5 DLDNLKTMTYEVT-GRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83 (302)
T ss_pred ccCCCCeEEEEeE-CCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence 3566788999987 899999999999999999999999999999999999999999999999999999999875422100
Q ss_pred --------------------c--------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207 83 --------------------V--------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDT 134 (145)
Q Consensus 83 --------------------~--------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~p 134 (145)
. ....++.+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p 163 (302)
T PRK08272 84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP 163 (302)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence 0 112235677889999999999999999999999999999999999999999
Q ss_pred ceee-eecC
Q 032207 135 HARL-VCKI 142 (145)
Q Consensus 135 e~~~-G~~~ 142 (145)
|+++ |+|+
T Consensus 164 e~~~gg~~~ 172 (302)
T PRK08272 164 PTRVWGVPA 172 (302)
T ss_pred chhcccCCh
Confidence 9997 7775
No 30
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-37 Score=235.07 Aligned_cols=134 Identities=28% Similarity=0.469 Sum_probs=117.5
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc------
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTR-SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG------ 81 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~-~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~------ 81 (145)
.+.++++ ++|++|+||||+++|+++. +|+++|.+++++++.|+++|+|||+|.|++||+|.|++++......
T Consensus 4 ~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (266)
T PRK09245 4 FLLVERD-GHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA 82 (266)
T ss_pred ceEEEEE-CCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence 4788886 8999999999999999995 9999999999999999999999999999999999999987542110
Q ss_pred C----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 82 D----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 82 ~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
. ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~ 148 (266)
T PRK09245 83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPG 148 (266)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCC
Confidence 0 0111245667889999999999999999999999999999999999999999999998765
No 31
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-37 Score=233.76 Aligned_cols=133 Identities=24% Similarity=0.405 Sum_probs=114.5
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---cccH
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---VKDV 86 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---~~~~ 86 (145)
|.++.+ ++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++....... ....
T Consensus 1 ~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06563 1 VSRERR-GHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEG 79 (255)
T ss_pred CeEEEE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhh
Confidence 356776 899999999999999999999999999999999999999999999999999999999875422111 1111
Q ss_pred HHHHH-HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 87 ETDTV-AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 87 ~~~~~-~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
..+.+ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus 80 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~ 137 (255)
T PRK06563 80 GIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPF 137 (255)
T ss_pred hhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCC
Confidence 22333 3588999999999999999999999999999999999999999999998764
No 32
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-37 Score=234.24 Aligned_cols=135 Identities=33% Similarity=0.608 Sum_probs=117.8
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---Cc
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---DV 83 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~~ 83 (145)
++.+.++.+ ++|++|+||||+++|++|.+|+++|.+++++++ |+++|+|||+|.|++||+|.|++++...... ..
T Consensus 3 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (262)
T PRK08140 3 YETILLAIE-AGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL 80 (262)
T ss_pred CceEEEEeE-CCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence 456888887 899999999999999999999999999999999 9999999999999999999999986432111 10
Q ss_pred c----cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 84 K----DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 84 ~----~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
. ..+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~ 144 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPD 144 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCC
Confidence 1 11234567889999999999999999999999999999999999999999999998765
No 33
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-37 Score=234.00 Aligned_cols=137 Identities=31% Similarity=0.466 Sum_probs=119.2
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc---
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV--- 83 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~--- 83 (145)
++.+.++++ ++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++........
T Consensus 2 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (262)
T PRK07509 2 MDRVSVTIE-DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLL 80 (262)
T ss_pred CceEEEEee-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhH
Confidence 356888886 9999999999999999999999999999999999999999999999999999999998754211110
Q ss_pred c-------cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 K-------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 ~-------~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
. ..+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~ 148 (262)
T PRK07509 81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDM 148 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCc
Confidence 0 122345567789999999999999999999999999999999999999999999998764
No 34
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.9e-37 Score=233.46 Aligned_cols=137 Identities=31% Similarity=0.577 Sum_probs=120.7
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC---
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD--- 82 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~--- 82 (145)
++.+.++++ ++|++|+||||++.|++|.+|+.+|.++++++++|+++|+|||+|.| ++||+|.|++++.......
T Consensus 3 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 81 (260)
T PRK05809 3 LKNVILEKE-GHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRK 81 (260)
T ss_pred cceEEEEEe-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHH
Confidence 556888886 89999999999999999999999999999999999999999999999 9999999999875422111
Q ss_pred cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
......+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~ 143 (260)
T PRK05809 82 FGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGF 143 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCc
Confidence 11223456788999999999999999999999999999999999999999999999998763
No 35
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.1e-37 Score=233.75 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=115.5
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHH
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETD 89 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 89 (145)
+.++++ ++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|.|++++.............+
T Consensus 3 v~~~~~-~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 80 (251)
T TIGR03189 3 VWLERD-GKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHK 80 (251)
T ss_pred EEEEee-CCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHH
Confidence 677876 889999999997 699999999999999999999999999999999999999999987532110111222355
Q ss_pred HHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 90 TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 90 ~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.+++
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 135 (251)
T TIGR03189 81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA 135 (251)
T ss_pred HHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc
Confidence 6778999999999999999999999999999999999999999999999886554
No 36
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-37 Score=237.68 Aligned_cols=137 Identities=33% Similarity=0.510 Sum_probs=119.1
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc------
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK------ 80 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~------ 80 (145)
++.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++.....
T Consensus 3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (296)
T PRK08260 3 YETIRYDVA-DGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRT 81 (296)
T ss_pred cceEEEeee-CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccccc
Confidence 456888886 8999999999999999999999999999999999999999999999999999999998643110
Q ss_pred ----------cC----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 81 ----------GD----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 81 ----------~~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.. ......+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~ 159 (296)
T PRK08260 82 PVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA 159 (296)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence 00 01112356778899999999999999999999999999999999999999999999987753
No 37
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-37 Score=234.92 Aligned_cols=139 Identities=28% Similarity=0.513 Sum_probs=121.2
Q ss_pred CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc-
Q 032207 4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG- 81 (145)
Q Consensus 4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~- 81 (145)
+...+.+.++++ ++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||+|.| ++||+|.|++++......
T Consensus 7 ~~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 85 (269)
T PRK06127 7 SSPTGKLLAEKT-GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDA 85 (269)
T ss_pred CCCCCceEEEEE-CCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccch
Confidence 445677899987 89999999999999999999999999999999999999999999998 799999999987542111
Q ss_pred C----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 82 D----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 82 ~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
. ......+++.+|..+|||+||++||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~ 151 (269)
T PRK06127 86 EAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYG 151 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCC
Confidence 1 1122345667889999999999999999999999999999999999999999999998664
No 38
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-37 Score=229.86 Aligned_cols=135 Identities=27% Similarity=0.414 Sum_probs=116.6
Q ss_pred CcEEEEEc----CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-
Q 032207 8 NLILVTRD----PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD- 82 (145)
Q Consensus 8 ~~i~~~~~----~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~- 82 (145)
++|.++.. +++|++|+||||+ .|+|+.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++.......
T Consensus 3 ~~~~~~~~~~~~~~~i~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~ 81 (222)
T PRK05869 3 EFVNVVVSDGSQDAGLATLLLSRPP-TNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEA 81 (222)
T ss_pred cchhhhcccCcccCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhH
Confidence 44555543 4889999999998 59999999999999999999999999999999999999999999875422111
Q ss_pred --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
..+.++++++++.++|||+||++||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 82 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~ 144 (222)
T PRK05869 82 DTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPS 144 (222)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCC
Confidence 1123356778899999999999999999999999999999999999999999999998765
No 39
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.3e-37 Score=236.02 Aligned_cols=138 Identities=31% Similarity=0.567 Sum_probs=116.7
Q ss_pred CCCcEEEEE--cCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--
Q 032207 6 SENLILVTR--DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-- 81 (145)
Q Consensus 6 ~~~~i~~~~--~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-- 81 (145)
.|+.+++-. .+++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||+|.|++||+|+|++++......
T Consensus 3 ~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~ 82 (275)
T PLN02664 3 SYKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82 (275)
T ss_pred CccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccc
Confidence 444444322 2388999999999999999999999999999999999999999999999999999999987542110
Q ss_pred --C-------c---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 82 --D-------V---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 82 --~-------~---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
. . ...+++++.+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~ 156 (275)
T PLN02664 83 SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITAD 156 (275)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCC
Confidence 0 0 012245667889999999999999999999999999999999999999999999998775
No 40
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-37 Score=233.12 Aligned_cols=137 Identities=30% Similarity=0.526 Sum_probs=119.6
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccCc---
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGDV--- 83 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~~--- 83 (145)
+.+.+++.+++|++|+||||++.|+++.+|+.+|.++++++++|+++|+|||+|.| ++||+|.|++++........
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 82 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHA 82 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHH
Confidence 47788864489999999999999999999999999999999999999999999999 59999999998753211111
Q ss_pred ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
...+++++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus 83 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~ 143 (260)
T PRK07657 83 VSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGA 143 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCc
Confidence 1233566788999999999999999999999999999999999999999999999987764
No 41
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-37 Score=232.72 Aligned_cols=138 Identities=34% Similarity=0.491 Sum_probs=120.2
Q ss_pred CCCcEEEEEcCC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc-
Q 032207 6 SENLILVTRDPM-GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV- 83 (145)
Q Consensus 6 ~~~~i~~~~~~~-~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~- 83 (145)
.++.+.++++ + +|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|.|++++........
T Consensus 3 ~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06210 3 AYDAVLYEVA-DSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR 81 (272)
T ss_pred CcceEEEEEC-CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence 4567899987 7 999999999999999999999999999999999999999999999999999999998754211100
Q ss_pred --------c----cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 --------K----DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 --------~----~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
. ..+++.+.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~ 154 (272)
T PRK06210 82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEH 154 (272)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCC
Confidence 0 012345678899999999999999999999999999999999999999999999987763
No 42
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.3e-37 Score=230.89 Aligned_cols=137 Identities=20% Similarity=0.331 Sum_probs=120.3
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccH
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDV 86 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (145)
++.+.++.+ ++|++|+||||++.|++|.+++++|.+++++++.|+++|+|||+|.|++||+|.|++++...........
T Consensus 4 ~~~~~~~~~-~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (249)
T PRK07110 4 KVVELREVE-EGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFT 82 (249)
T ss_pred CceEEEEee-CCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHh
Confidence 566777876 8999999999999999999999999999999999999999999999999999999998754322111111
Q ss_pred HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 87 ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 87 ~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.++++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 140 (249)
T PRK07110 83 EANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGM 140 (249)
T ss_pred hHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCc
Confidence 1467788999999999999999999999999999999999999999999999987764
No 43
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-37 Score=233.78 Aligned_cols=136 Identities=24% Similarity=0.461 Sum_probs=119.4
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCC-CeeEEEEEcCCCcccccCCchhhhhhccc----
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDE-SVLVIILSGSGRAFCSGVDLTSAEDVFKG---- 81 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~-~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---- 81 (145)
++.+.++++ ++|++|+||||+++|++|.+|+++|.++++.+++|+ ++|+|||+|.|++||+|.|++++......
T Consensus 3 ~~~v~~~~~-~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 3 FKKVTLDFD-GGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred cceEEEEeE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 567888987 899999999999999999999999999999999876 49999999999999999999987542111
Q ss_pred -C----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 82 -D----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 82 -~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
. ....+++++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~ 148 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPD 148 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCC
Confidence 0 1122356778899999999999999999999999999999999999999999999998775
No 44
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3.1e-37 Score=232.18 Aligned_cols=136 Identities=32% Similarity=0.495 Sum_probs=116.6
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc-C--c
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG-D--V 83 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~-~--~ 83 (145)
+.+.+++++++|++|+||||+++|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|.|++++...... . .
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 34778872389999999999999999999999999999999999999999999999 799999999876422111 0 0
Q ss_pred -ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 84 -KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 84 -~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
.....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~ 142 (259)
T TIGR01929 82 HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDG 142 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCC
Confidence 011245677889999999999999999999999999999999999999999999998653
No 45
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-37 Score=231.63 Aligned_cols=138 Identities=26% Similarity=0.379 Sum_probs=120.5
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207 5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-- 82 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-- 82 (145)
++.+.+.++.+ ++|++|+||||++.|++|.+|+.+|.++++++ .|+++|+|||+|.|++||+|.|++++.......
T Consensus 3 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (260)
T PRK07659 3 SKMESVVVKYE-GRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKF 80 (260)
T ss_pred CCCceEEEEee-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhH
Confidence 44567899987 89999999999999999999999999999999 588999999999999999999999875422111
Q ss_pred --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
....+++++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 144 (260)
T PRK07659 81 DGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDG 144 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCC
Confidence 11234566778899999999999999999999999999999999999999999999998753
No 46
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-37 Score=236.24 Aligned_cols=137 Identities=28% Similarity=0.478 Sum_probs=115.9
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchh-hhh---hc--
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS-AED---VF-- 79 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~-~~~---~~-- 79 (145)
+++.+.++.+ ++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|+++ +.. ..
T Consensus 3 ~~~~v~~~~~-~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 3 DFQTLLYTTA-GPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred CceEEEEecc-CCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence 3567888876 8999999999999999999999999999999999999999999999999999999986 211 00
Q ss_pred cc--C-ccc------H---HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceee-eecCC
Q 032207 80 KG--D-VKD------V---ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL-VCKIS 143 (145)
Q Consensus 80 ~~--~-~~~------~---~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~-G~~~g 143 (145)
.. . ... . ..+.+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++ |++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~ 158 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT 158 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch
Confidence 00 0 000 0 1234567889999999999999999999999999999999999999999997 87654
No 47
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=2.3e-37 Score=232.53 Aligned_cols=132 Identities=33% Similarity=0.616 Sum_probs=114.5
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Ccc---
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DVK--- 84 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~~--- 84 (145)
|.++++ ++|++|+||||++.|++|.+|+.+|.++++++++|+ +|+|||||.|++||+|.|++++...... ...
T Consensus 1 ~~~e~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALE-AGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred CeEEEE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 356776 899999999999999999999999999999999998 9999999999999999999987542111 111
Q ss_pred -cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 85 -DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 85 -~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
..+.++++++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~ 138 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPD 138 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCC
Confidence 11234567889999999999999999999999999999999999999999999997664
No 48
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-37 Score=231.83 Aligned_cols=134 Identities=26% Similarity=0.377 Sum_probs=117.1
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC---cc
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD---VK 84 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~---~~ 84 (145)
.+.++++ ++|++||||||++ |+++.+|+.+|.++++++++|+++|+|||+|.| ++||+|.|++++....... ..
T Consensus 4 ~v~~~~~-~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (258)
T PRK09076 4 ELDLEID-GHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMA 81 (258)
T ss_pred EEEEEEE-CCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHH
Confidence 4778886 8999999999985 999999999999999999999999999999998 7899999999875321111 11
Q ss_pred cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
..+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus 82 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~ 141 (258)
T PRK09076 82 RRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCA 141 (258)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCc
Confidence 223556778999999999999999999999999999999999999999999999987763
No 49
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-37 Score=231.13 Aligned_cols=134 Identities=31% Similarity=0.481 Sum_probs=114.1
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccH-H
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDV-E 87 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~-~ 87 (145)
.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++........... .
T Consensus 4 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 82 (254)
T PRK08259 4 SVRVERN-GPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGD 82 (254)
T ss_pred eEEEEEE-CCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhc
Confidence 3788876 8999999999999999999999999999999999999999999999999999999998653211111100 0
Q ss_pred HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
......+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus 83 ~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~ 138 (254)
T PRK08259 83 GPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLI 138 (254)
T ss_pred chhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCC
Confidence 11122334799999999999999999999999999999999999999999999875
No 50
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-37 Score=232.46 Aligned_cols=135 Identities=28% Similarity=0.552 Sum_probs=117.8
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cc-
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DV- 83 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~- 83 (145)
++.+.++++ ++|++|+||||+ .|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... ..
T Consensus 3 ~~~i~~~~~-~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 80 (257)
T PRK06495 3 MSQLKLEVS-DHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLR 80 (257)
T ss_pred cceEEEEee-CCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHH
Confidence 346888886 899999999998 6999999999999999999999999999999999999999999987542111 11
Q ss_pred --ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 84 --KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 84 --~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~ 142 (257)
T PRK06495 81 AHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGG 142 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcccc
Confidence 122345677899999999999999999999999999999999999999999999998744
No 51
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-37 Score=234.93 Aligned_cols=136 Identities=28% Similarity=0.429 Sum_probs=117.9
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-----
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK----- 80 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~----- 80 (145)
+++.+.++.+ ++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||||.|++||+|.|++++.....
T Consensus 2 ~~~~v~~~~~-~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 80 (288)
T PRK08290 2 EYEYVRYEVA-GRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGP 80 (288)
T ss_pred CCceEEEEee-CCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccc
Confidence 3566888886 8999999999999999999999999999999999999999999999999999999997632111
Q ss_pred -------------cC----c---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeee
Q 032207 81 -------------GD----V---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVC 140 (145)
Q Consensus 81 -------------~~----~---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~ 140 (145)
.. . ...+.+++..+.++|||+||+|||+|+|+|++|+++||+|||+++++|++||+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl 160 (288)
T PRK08290 81 DQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI 160 (288)
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc
Confidence 00 0 012234566789999999999999999999999999999999999999999999999
Q ss_pred cC
Q 032207 141 KI 142 (145)
Q Consensus 141 ~~ 142 (145)
|.
T Consensus 161 ~~ 162 (288)
T PRK08290 161 PG 162 (288)
T ss_pred Cc
Confidence 74
No 52
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=4.1e-37 Score=231.77 Aligned_cols=135 Identities=25% Similarity=0.432 Sum_probs=118.4
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC-C-CcccccCCchhhhhhccc--C
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-G-RAFCSGVDLTSAEDVFKG--D 82 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g-~~F~~G~dl~~~~~~~~~--~ 82 (145)
++.+.++.+ ++|++||||||+++|++|.+|+++|.++++++++|+ +|+|||+|. + ++||+|.|++++...... .
T Consensus 3 ~~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~ 80 (261)
T PRK11423 3 MQYVNVVTI-NKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLS 80 (261)
T ss_pred ccceEEEeE-CCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHH
Confidence 457888886 999999999999999999999999999999999887 999999986 3 899999999986432111 1
Q ss_pred cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
....+.++++++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus 81 ~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~ 141 (261)
T PRK11423 81 YDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYN 141 (261)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCC
Confidence 1233456788899999999999999999999999999999999999999999999999875
No 53
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-37 Score=229.82 Aligned_cols=141 Identities=42% Similarity=0.621 Sum_probs=122.4
Q ss_pred CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc
Q 032207 4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV 83 (145)
Q Consensus 4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~ 83 (145)
..++..+.+...+++|+.|+||||+++|+|+..++.||.+++..+++|+.+.++|+||.|+.||+|.|++++......+.
T Consensus 32 ~~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~ 111 (290)
T KOG1680|consen 32 EFEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDV 111 (290)
T ss_pred ccCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccc
Confidence 33444555555568999999999999999999999999999999999999999999999999999999999877444333
Q ss_pred cc-HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 KD-VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 ~~-~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.. .+.+.+..+.+.+||+|+++||+|+|||+||++.||+|||+++++|++||.++|++|+.
T Consensus 112 ~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~ 173 (290)
T KOG1680|consen 112 SDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSW 173 (290)
T ss_pred ccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCC
Confidence 22 23445556668999999999999999999999999999999999999999999999974
No 54
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-37 Score=232.74 Aligned_cols=134 Identities=31% Similarity=0.455 Sum_probs=117.9
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-C----
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-D---- 82 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~---- 82 (145)
+.+.++.+ ++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++...... .
T Consensus 17 ~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~ 95 (277)
T PRK08258 17 RHFLWEVD-DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPEL 95 (277)
T ss_pred cceEEEEE-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHH
Confidence 46888886 89999999999999999999999999999999999999999999999999999999987432111 1
Q ss_pred --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207 83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI 142 (145)
Q Consensus 83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~ 142 (145)
.....+++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|
T Consensus 96 ~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p 157 (277)
T PRK08258 96 LAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAG 157 (277)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCC
Confidence 112234667889999999999999999999999999999999999999999999999863
No 55
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=6e-37 Score=241.72 Aligned_cols=138 Identities=22% Similarity=0.324 Sum_probs=120.0
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-c-
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-V- 83 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-~- 83 (145)
....|.++.. ++|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.|++||+|+|++++....... .
T Consensus 35 ~~~~V~~e~~-g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~ 113 (401)
T PLN02157 35 LDYQVLVEGS-GCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPD 113 (401)
T ss_pred CCCceEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence 4567888886 899999999999999999999999999999999999999999999999999999999876432111 0
Q ss_pred -----ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 -----KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 -----~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.....++..+|.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus 114 ~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~ 179 (401)
T PLN02157 114 AIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDA 179 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCc
Confidence 1112234567899999999999999999999999999999999999999999999987753
No 56
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-37 Score=229.64 Aligned_cols=131 Identities=30% Similarity=0.491 Sum_probs=115.0
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHH
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETD 89 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 89 (145)
+.++++ ++|++||||||+++|++|.+|+.+|.+++++++++ ++|+|||||.|++||+|.|+++... .........+
T Consensus 2 ~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~--~~~~~~~~~~ 77 (243)
T PRK07854 2 IGVTRD-GQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY--ADDFPDALIE 77 (243)
T ss_pred ceEEEe-CCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh--HHHHHHHHHH
Confidence 567776 89999999999999999999999999999999865 8999999999999999999985211 1112233456
Q ss_pred HHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 90 TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 90 ~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
+++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 78 ~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~ 132 (243)
T PRK07854 78 MLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDN 132 (243)
T ss_pred HHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCc
Confidence 7788999999999999999999999999999999999999999999999998753
No 57
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=7.8e-37 Score=231.59 Aligned_cols=137 Identities=33% Similarity=0.484 Sum_probs=118.5
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcc-c-C
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFK-G-D 82 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~-~-~ 82 (145)
+++.+.++.+ ++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|.|++++..... . .
T Consensus 11 ~~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 89 (273)
T PRK07396 11 EYEDILYKSA-DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDD 89 (273)
T ss_pred CCcceEEEec-CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchh
Confidence 4577888886 89999999999999999999999999999999999999999999998 69999999998642111 1 0
Q ss_pred -ccc-HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 83 -VKD-VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 83 -~~~-~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
... ...++++.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus 90 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~ 152 (273)
T PRK07396 90 GVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDG 152 (273)
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCC
Confidence 111 1234567889999999999999999999999999999999999999999999987764
No 58
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-37 Score=229.77 Aligned_cols=133 Identities=34% Similarity=0.531 Sum_probs=113.8
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc-ccH
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV-KDV 86 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~-~~~ 86 (145)
+.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++........ ...
T Consensus 3 ~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (254)
T PRK08252 3 DEVLVERR-GRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRG 81 (254)
T ss_pred ceEEEEEE-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHH
Confidence 35788887 8999999999999999999999999999999999999999999999999999999998754211111 011
Q ss_pred HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 87 ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 87 ~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
+..++ ...+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus 82 ~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~ 136 (254)
T PRK08252 82 FGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAA 136 (254)
T ss_pred HHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCC
Confidence 11111 24799999999999999999999999999999999999999999999875
No 59
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6e-37 Score=230.33 Aligned_cols=134 Identities=26% Similarity=0.490 Sum_probs=118.3
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-C---cc
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-D---VK 84 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~---~~ 84 (145)
.+.++++ ++|++|+||||++ |+++.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... . ..
T Consensus 3 ~i~~~~~-~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (257)
T PRK07658 3 FLSVRVE-DHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELA 80 (257)
T ss_pred eEEEEee-CCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHH
Confidence 6788886 8999999999985 999999999999999999999999999999999999999999987542211 1 11
Q ss_pred cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
...++++++|..+|||+||++||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus 81 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~ 140 (257)
T PRK07658 81 QLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGF 140 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCC
Confidence 233567788999999999999999999999999999999999999999999999988764
No 60
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.3e-37 Score=240.06 Aligned_cols=141 Identities=24% Similarity=0.383 Sum_probs=122.4
Q ss_pred CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC
Q 032207 3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD 82 (145)
Q Consensus 3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~ 82 (145)
++++++.+.++.+ ++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 6 ~~~~~~~v~~~~~-~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~ 84 (379)
T PLN02874 6 QNPAEEVVLGEEK-GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD 84 (379)
T ss_pred CCCCCCceEEEEE-CCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc
Confidence 3567788999987 899999999999999999999999999999999999999999999999999999999875422111
Q ss_pred --ccc---HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 --VKD---VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 --~~~---~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
... ....+..+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|++
T Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~ 151 (379)
T PLN02874 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDC 151 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCCh
Confidence 111 12234567889999999999999999999999999999999999999999999987754
No 61
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-37 Score=228.88 Aligned_cols=133 Identities=26% Similarity=0.351 Sum_probs=114.4
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-cCc---cc
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-GDV---KD 85 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-~~~---~~ 85 (145)
|..+..+++|++|+||||+ .|+++.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++..... ... ..
T Consensus 3 ~~~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANR 81 (249)
T ss_pred eeecccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence 3444445899999999998 599999999999999999999999999999999999999999998653211 111 12
Q ss_pred HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
...+.+.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++++
T Consensus 82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~ 139 (249)
T PRK07938 82 GCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGA 139 (249)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchh
Confidence 2345677899999999999999999999999999999999999999999999998754
No 62
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.3e-36 Score=228.34 Aligned_cols=135 Identities=16% Similarity=0.311 Sum_probs=118.1
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC----
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---- 82 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---- 82 (145)
++.+.++++ ++|++|+||||++.|++|.+|+++|.+++++++ +++|+||++|.|++||+|.|++++.......
T Consensus 3 ~~~i~~~~~-~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07112 3 YQTIRVRQQ-GDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADL 79 (255)
T ss_pred CceEEEEee-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhh
Confidence 567899986 899999999999999999999999999999998 4699999999999999999999875422111
Q ss_pred -cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 -VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 -~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
......+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus 80 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~ 142 (255)
T PRK07112 80 IDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC 142 (255)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch
Confidence 11223567778999999999999999999999999999999999999999999999987763
No 63
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.6e-36 Score=228.63 Aligned_cols=133 Identities=30% Similarity=0.451 Sum_probs=115.9
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--Cccc
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG--DVKD 85 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~--~~~~ 85 (145)
.+.++++ ++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.| ++||+|.|++++...... ....
T Consensus 4 ~i~~~~~-~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (261)
T PRK03580 4 SLHTTRN-GSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGP 81 (261)
T ss_pred eEEEEEE-CCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhh
Confidence 4788887 899999999996 6999999999999999999999999999999998 799999999987532211 1111
Q ss_pred HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
.....++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 82 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~ 139 (261)
T PRK03580 82 GGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPD 139 (261)
T ss_pred hhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCC
Confidence 1234567889999999999999999999999999999999999999999999999775
No 64
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=9.9e-37 Score=228.54 Aligned_cols=129 Identities=26% Similarity=0.464 Sum_probs=112.9
Q ss_pred CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC-CCcccccCCchhhhhhcccC---cccHHHHHH
Q 032207 16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-GRAFCSGVDLTSAEDVFKGD---VKDVETDTV 91 (145)
Q Consensus 16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~~---~~~~~~~~~ 91 (145)
+++|++||||||+++|+||.+|+++|.++++++++|+++|+|||+|. |++||+|.|++++....... .....++++
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF 81 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999998 58999999999875321111 122234567
Q ss_pred HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 92 AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 92 ~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 82 ~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~ 134 (251)
T PLN02600 82 SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGA 134 (251)
T ss_pred HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCc
Confidence 78899999999999999999999999999999999999999999999987753
No 65
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.5e-36 Score=236.17 Aligned_cols=136 Identities=23% Similarity=0.410 Sum_probs=119.1
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--C--
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG--D-- 82 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~--~-- 82 (145)
+.+.++++ ++|++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...... .
T Consensus 3 ~~v~~~~~-~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 3 DEVLAEVE-GGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred ceEEEEEE-CCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 46788886 89999999999999999999999999999999999999999999999 999999999987542211 1
Q ss_pred ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
......+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~ 146 (342)
T PRK05617 82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDV 146 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCc
Confidence 11122356678899999999999999999999999999999999999999999999987753
No 66
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2e-36 Score=237.78 Aligned_cols=140 Identities=25% Similarity=0.370 Sum_probs=120.4
Q ss_pred CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc
Q 032207 4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV 83 (145)
Q Consensus 4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~ 83 (145)
+.+...|.++.+ ++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.|++||+|+|++++........
T Consensus 5 ~~~~~~v~~~~~-~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~ 83 (381)
T PLN02988 5 MASQSQVLVEEK-SSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGN 83 (381)
T ss_pred cccCCceEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccc
Confidence 455567888886 8999999999999999999999999999999999999999999999999999999998753221111
Q ss_pred -------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 84 -------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 84 -------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
......+..++.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.|++
T Consensus 84 ~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~ 151 (381)
T PLN02988 84 WRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDV 151 (381)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCc
Confidence 0111234457889999999999999999999999999999999999999999999987764
No 67
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=6.2e-37 Score=228.69 Aligned_cols=132 Identities=33% Similarity=0.535 Sum_probs=119.2
Q ss_pred EEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc---cCcccHH
Q 032207 11 LVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK---GDVKDVE 87 (145)
Q Consensus 11 ~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~---~~~~~~~ 87 (145)
.++.+ ++|++|+||+|++.|++|.+++++|.++++.+++|+++|+||++|.++.||+|.|++++..... ....+.+
T Consensus 1 ~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 79 (245)
T PF00378_consen 1 KYEIE-DGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRF 79 (245)
T ss_dssp EEEEE-TTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhh
Confidence 36776 9999999999988999999999999999999999999999999999999999999999876621 1233456
Q ss_pred HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
++++.++..+|||+||++||+|+|+|++|+++||+||++++++|++||+++|++|+
T Consensus 80 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~ 135 (245)
T PF00378_consen 80 QELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPG 135 (245)
T ss_dssp HHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSST
T ss_pred ccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccc
Confidence 77889999999999999999999999999999999999999999999999998885
No 68
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.1e-35 Score=225.86 Aligned_cols=137 Identities=21% Similarity=0.275 Sum_probs=116.9
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC--CcccccCCchhhhhhccc-C
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG--RAFCSGVDLTSAEDVFKG-D 82 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g--~~F~~G~dl~~~~~~~~~-~ 82 (145)
..+.+.+++.+++|++|+||||+ .|++|.+|+++|.++++++++|+++|+|||||.| ++||+|.|++++...... .
T Consensus 9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~ 87 (278)
T PLN03214 9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAA 87 (278)
T ss_pred CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchH
Confidence 35688898844889999999985 7999999999999999999999999999999987 799999999986532111 1
Q ss_pred ----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeec-CC
Q 032207 83 ----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCK-IS 143 (145)
Q Consensus 83 ----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~-~g 143 (145)
......+++.+|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++ ++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~ 153 (278)
T PLN03214 88 RYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPK 153 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCC
Confidence 11112346678999999999999999999999999999999999999999999999984 54
No 69
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.8e-35 Score=228.71 Aligned_cols=137 Identities=33% Similarity=0.456 Sum_probs=117.6
Q ss_pred CCCcEEEEEc-CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--
Q 032207 6 SENLILVTRD-PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG-- 81 (145)
Q Consensus 6 ~~~~i~~~~~-~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~-- 81 (145)
+++.|.++++ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~ 142 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGP 142 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccch
Confidence 4667888873 488999999999999999999999999999999999999999999999 899999999976431101
Q ss_pred Cccc--HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207 82 DVKD--VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI 142 (145)
Q Consensus 82 ~~~~--~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~ 142 (145)
.... ...+++.+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.+
T Consensus 143 ~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p 205 (327)
T PLN02921 143 DDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFD 205 (327)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCC
Confidence 0011 113456788999999999999999999999999999999999999999999998754
No 70
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.7e-35 Score=233.55 Aligned_cols=139 Identities=23% Similarity=0.361 Sum_probs=120.7
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207 5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-- 82 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-- 82 (145)
..++.+.++.. +++++|+||||+++|+|+.+|+.+|.++++.+++|+++++|||+|.|+.||+|+|++++.+.....
T Consensus 39 ~~~~~v~~e~~-~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~ 117 (407)
T PLN02851 39 DLQDQVLVEGR-AKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNV 117 (407)
T ss_pred CCCCCeEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccch
Confidence 34567888886 899999999999999999999999999999999999999999999999999999999886532211
Q ss_pred -----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 -----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 -----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
+....+++.+.|.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus 118 ~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~Pdv 184 (407)
T PLN02851 118 EECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDA 184 (407)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCc
Confidence 11123445567789999999999999999999999999999999999999999999987653
No 71
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=7.7e-35 Score=223.42 Aligned_cols=135 Identities=24% Similarity=0.355 Sum_probs=113.6
Q ss_pred CCcEEEEE--cCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-------CcccccCCchhhhh
Q 032207 7 ENLILVTR--DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-------RAFCSGVDLTSAED 77 (145)
Q Consensus 7 ~~~i~~~~--~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-------~~F~~G~dl~~~~~ 77 (145)
.+.+++++ + ++|++||||||+++|+++.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++..
T Consensus 22 ~~~i~~~~~~~-~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~ 100 (302)
T PRK08321 22 FTDITYHRAVD-QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGR 100 (302)
T ss_pred ceeEEEEEecC-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcc
Confidence 34688887 6 88999999999999999999999999999999999999999999988 59999999987532
Q ss_pred hc----cc------Cccc--H--HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEe-CCcEEeccceeeeecC
Q 032207 78 VF----KG------DVKD--V--ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA-KGAKFIDTHARLVCKI 142 (145)
Q Consensus 78 ~~----~~------~~~~--~--~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~-~~a~f~~pe~~~G~~~ 142 (145)
.. .. .... . ..++.+.+..+|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p 180 (302)
T PRK08321 101 DGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFD 180 (302)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCC
Confidence 10 00 0000 0 1234567889999999999999999999999999999999 6899999999998654
No 72
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.6e-35 Score=215.16 Aligned_cols=130 Identities=21% Similarity=0.333 Sum_probs=112.8
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cccc
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DVKD 85 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~~~ 85 (145)
+.+.++.+ ++|++|+||||+ .|+++.+++++|.++++.++ +++|+||++|.|++||+|.|++++...... ....
T Consensus 3 ~~i~~~~~-~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 78 (229)
T PRK06213 3 ELVSYTLE-DGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLT 78 (229)
T ss_pred ceEEEEec-CCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHH
Confidence 36888886 899999999984 79999999999999999998 557999999999999999999987542111 1122
Q ss_pred HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEeccceeeeec
Q 032207 86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFIDTHARLVCK 141 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~pe~~~G~~ 141 (145)
...++++++..+|||+||++||+|+|+|++|+++||+|||+++ ++|++||+++|++
T Consensus 79 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~ 135 (229)
T PRK06213 79 AGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMT 135 (229)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCc
Confidence 3456778899999999999999999999999999999999999 9999999999975
No 73
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=7.9e-35 Score=216.85 Aligned_cols=132 Identities=18% Similarity=0.258 Sum_probs=111.4
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCee-EEEEEcCCCcccccCCchhhhhhccc-----Cc
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVL-VIILSGSGRAFCSGVDLTSAEDVFKG-----DV 83 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~-~vvl~g~g~~F~~G~dl~~~~~~~~~-----~~ 83 (145)
+.++++ ++|++|+||||++ |+|+.+|+++|.+++++++.|++++ +||++|.|++||+|.|++++...... ..
T Consensus 2 ~~~~~~-~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 79 (239)
T PLN02267 2 CTLEKR-GNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM 79 (239)
T ss_pred ceeEec-CCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence 466776 8999999999984 9999999999999999999998875 77789999999999999986432111 01
Q ss_pred ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEe-CCcEEeccceeeeec-CC
Q 032207 84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA-KGAKFIDTHARLVCK-IS 143 (145)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~-~~a~f~~pe~~~G~~-~g 143 (145)
...+++++.++.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |+
T Consensus 80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~ 141 (239)
T PLN02267 80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPD 141 (239)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCCh
Confidence 1234556778999999999999999999999999999999998 568999999999985 53
No 74
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-34 Score=219.21 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=108.6
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhcc-----CCCeeEEEEEcC-CCcccccCCchhhhhhcccCc
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDK-----DESVLVIILSGS-GRAFCSGVDLTSAEDVFKGDV 83 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~-----~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~~~ 83 (145)
|.++.+ ++|++|+|| |+++|+|+.+|+++|.++++++++ |+++|+|||+|. |++||+|.|++++........
T Consensus 19 i~~e~~-~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 19 VYYEEE-RNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEcc-CCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 444443 789999996 888999999999999999999998 899999999999 799999999998653211111
Q ss_pred cc-------HHHHHHHHHh---cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 84 KD-------VETDTVAQME---RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 84 ~~-------~~~~~~~~l~---~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
.. ...+.+.++. .+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~ 166 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPG 166 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCC
Confidence 11 1122233333 799999999999999999999999999999999999999999998775
No 75
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1e-34 Score=224.33 Aligned_cols=126 Identities=25% Similarity=0.477 Sum_probs=110.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC------cccHHHHHH
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD------VKDVETDTV 91 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~------~~~~~~~~~ 91 (145)
+++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..+.+++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999 6999999999875432111 112234567
Q ss_pred HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 92 AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 92 ~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~ 170 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIG 170 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCc
Confidence 78999999999999999999999999999999999999999999999988763
No 76
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.4e-34 Score=241.45 Aligned_cols=136 Identities=25% Similarity=0.362 Sum_probs=118.9
Q ss_pred CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc------
Q 032207 8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG------ 81 (145)
Q Consensus 8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~------ 81 (145)
..+.++..+++|++|+||||+++|++|.+|+++|.++++.+++|+++|+|||+|.|++||+|+|++++......
T Consensus 6 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 85 (715)
T PRK11730 6 KTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELS 85 (715)
T ss_pred ceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHH
Confidence 36778754489999999999999999999999999999999999999999999999999999999987542111
Q ss_pred CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 82 DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
......++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~ 147 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPG 147 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC
Confidence 11123345677899999999999999999999999999999999999999999999998775
No 77
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=8.6e-34 Score=237.87 Aligned_cols=136 Identities=27% Similarity=0.325 Sum_probs=120.5
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC------
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD------ 82 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~------ 82 (145)
.+.++..+++|++|+||||++.|+|+.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence 67888655899999999999999999999999999999999999999999999999999999999875421111
Q ss_pred cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
..+..++++.+|..+|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.||.
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~ 148 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGF 148 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCc
Confidence 11234567889999999999999999999999999999999999999999999999998874
No 78
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.3e-33 Score=203.80 Aligned_cols=133 Identities=35% Similarity=0.594 Sum_probs=119.7
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-----cc
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-----VK 84 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-----~~ 84 (145)
+.++++ ++|++|+||+|++.|++|.+++++|.++++.++.|+++++|||+|.++.||+|.|++++....... ..
T Consensus 1 i~~~~~-~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 1 VLVERD-GGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred CEEEEE-CCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 356776 899999999999999999999999999999999999999999999999999999999987654432 23
Q ss_pred cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
+..++++.++..+|||+|+++||+|.|+|++++++||+||++++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~ 138 (195)
T cd06558 80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPG 138 (195)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCC
Confidence 44567788899999999999999999999999999999999999999999999988754
No 79
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=2.5e-32 Score=222.27 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=115.1
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHhhc-cCCCeeEEEEEcC-CCcccccCCc
Q 032207 5 KSENLILVTRDPMGIAYVTINRPK----------SLNSLTRSMMADMAQAFKSLD-KDESVLVIILSGS-GRAFCSGVDL 72 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~----------~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~-g~~F~~G~dl 72 (145)
++++++.++++ ++|++|+||||+ |+|+++.+|+++|.+++++++ .++++|+|||||. |++||+|.|+
T Consensus 8 ~~~~~v~~~~~-g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL 86 (546)
T TIGR03222 8 SQYRHWKLTFD-GPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI 86 (546)
T ss_pred CCCceEEEEee-CCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence 34578999987 899999999975 899999999999999999999 7899999999987 5999999999
Q ss_pred hhhhhhcccC---cccHH----HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEecccee-eeecC
Q 032207 73 TSAEDVFKGD---VKDVE----TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHAR-LVCKI 142 (145)
Q Consensus 73 ~~~~~~~~~~---~~~~~----~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~-~G~~~ 142 (145)
+++....... ..... ..+.+.+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|+.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P 166 (546)
T TIGR03222 87 FMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLP 166 (546)
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCC
Confidence 9874321110 00111 22344667899999999999999999999999999999986 799999997 88877
Q ss_pred C
Q 032207 143 S 143 (145)
Q Consensus 143 g 143 (145)
+
T Consensus 167 ~ 167 (546)
T TIGR03222 167 G 167 (546)
T ss_pred c
Confidence 5
No 80
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2.1e-32 Score=230.01 Aligned_cols=138 Identities=22% Similarity=0.372 Sum_probs=119.0
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEE-EEEcCCCcccccCCchhhhhhcccC-
Q 032207 6 SENLILVTRDPMGIAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVI-ILSGSGRAFCSGVDLTSAEDVFKGD- 82 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~v-vl~g~g~~F~~G~dl~~~~~~~~~~- 82 (145)
.++.+.++.+ ++|++|+||||+ +.|+|+.+++.+|.+++++++.|+++|++ |++|.|++||+|+|++++.......
T Consensus 11 ~~~~~~~~~~-~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~ 89 (737)
T TIGR02441 11 ARTHRHYEVK-GDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQE 89 (737)
T ss_pred CCCeEEEEEE-CCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHH
Confidence 4567888886 899999999998 58999999999999999999999999965 5699999999999999875321111
Q ss_pred ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEeccceeeeecCCC
Q 032207 83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHARLVCKISC 144 (145)
Q Consensus 83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~~G~~~g~ 144 (145)
.....++++.++.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|+.||.
T Consensus 90 ~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~ 156 (737)
T TIGR02441 90 VTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGA 156 (737)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCc
Confidence 1123456788999999999999999999999999999999999987 5899999999988764
No 81
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-33 Score=201.89 Aligned_cols=138 Identities=33% Similarity=0.541 Sum_probs=116.6
Q ss_pred CCCCcEEEE--EcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc--
Q 032207 5 KSENLILVT--RDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-- 80 (145)
Q Consensus 5 ~~~~~i~~~--~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-- 80 (145)
..++.+.+. ..+..|.++.||||.|+|+++..|+.|+.++++.+..||++|+|||+|.|++||+|.|+..+.....
T Consensus 16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~ 95 (292)
T KOG1681|consen 16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQ 95 (292)
T ss_pred cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccc
Confidence 345655555 3335699999999999999999999999999999999999999999999999999999876543211
Q ss_pred --c-Ccc----------cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207 81 --G-DVK----------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI 142 (145)
Q Consensus 81 --~-~~~----------~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~ 142 (145)
. +.. ..+++.+..|++||||+|++++|.|+|+|+.|..+||+|+|++++.|+.-|+.+|+.-
T Consensus 96 ~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaA 170 (292)
T KOG1681|consen 96 PEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAA 170 (292)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhh
Confidence 1 111 1235567789999999999999999999999999999999999999999999998753
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.3e-32 Score=229.04 Aligned_cols=135 Identities=24% Similarity=0.371 Sum_probs=114.8
Q ss_pred EEEEEcCCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhhccCCCeeEEEE-EcCCCcccccCCchhhhhhcccC----c
Q 032207 10 ILVTRDPMGIAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVLVIIL-SGSGRAFCSGVDLTSAEDVFKGD----V 83 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~-~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl-~g~g~~F~~G~dl~~~~~~~~~~----~ 83 (145)
+.++..+++|++|+|||| ++.|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++....... .
T Consensus 2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 344555589999999999 68999999999999999999999999999986 57889999999999875321111 1
Q ss_pred ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEeccceeeeecCCC
Q 032207 84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHARLVCKISC 144 (145)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~~G~~~g~ 144 (145)
....++++.++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|+.|+.
T Consensus 82 ~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~ 144 (699)
T TIGR02440 82 AQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGS 144 (699)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCc
Confidence 123356778899999999999999999999999999999999986 7999999999987763
No 83
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.98 E-value=6.6e-32 Score=226.65 Aligned_cols=135 Identities=20% Similarity=0.311 Sum_probs=116.1
Q ss_pred cEEEEEcCCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC----
Q 032207 9 LILVTRDPMGIAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD---- 82 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~-~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~---- 82 (145)
.+.++.++++|++|+|||| ++.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++.......
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4667775589999999999 589999999999999999999999999999999875 8999999999875321111
Q ss_pred cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEeccceeeeecCC
Q 032207 83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHARLVCKIS 143 (145)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~~G~~~g 143 (145)
.....++++.+|.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|+.|+
T Consensus 86 ~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~ 148 (708)
T PRK11154 86 LARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG 148 (708)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCC
Confidence 1123355778899999999999999999999999999999999987 499999999998765
No 84
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.98 E-value=4e-32 Score=221.07 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=113.0
Q ss_pred CcEEE--EEcCCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhhc-cCCCeeEEEEEcCCCc-ccccC
Q 032207 8 NLILV--TRDPMGIAYVTINRPKSL-------------NSLTRSMMADMAQAFKSLD-KDESVLVIILSGSGRA-FCSGV 70 (145)
Q Consensus 8 ~~i~~--~~~~~~v~~i~l~~~~~~-------------N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g~~-F~~G~ 70 (145)
.+|.+ +++ ++|++||||||+++ |+++.+|+++|.+++++++ +|+++|+|||||.|+. ||+|+
T Consensus 256 ~~~~v~~~~~-~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 256 PTVDVAIDRA-ARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeEEEEEecc-CCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 44444 444 88999999999999 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhhcccC---cccHHHHHHHHHhcCCccEEEee-chhccHHh-HHHHHhcCEEEE-------eCCcEEeccceee
Q 032207 71 DLTSAEDVFKGD---VKDVETDTVAQMERCRKPIIGAI-SGFAVTAG-FEIALACDVLVA-------AKGAKFIDTHARL 138 (145)
Q Consensus 71 dl~~~~~~~~~~---~~~~~~~~~~~l~~~~kp~Ia~v-~G~a~GgG-~~l~l~~D~~ia-------~~~a~f~~pe~~~ 138 (145)
|++......... .....++.+.+|..+|||+||+| ||+|+||| ++|+++||+||+ +++++|++||+++
T Consensus 335 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~l 414 (546)
T TIGR03222 335 DALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNF 414 (546)
T ss_pred CccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcccc
Confidence 998422111000 11223456788999999999999 89999999 999999999999 8999999999999
Q ss_pred eecCC
Q 032207 139 VCKIS 143 (145)
Q Consensus 139 G~~~g 143 (145)
|+.|+
T Consensus 415 Gl~p~ 419 (546)
T TIGR03222 415 GLYPM 419 (546)
T ss_pred ccCCC
Confidence 98775
No 85
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.97 E-value=2.1e-31 Score=217.24 Aligned_cols=139 Identities=18% Similarity=0.247 Sum_probs=115.7
Q ss_pred CCCCCcEEEEEcCCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHhhc-cCCCeeEEEEEcCC-CcccccCC
Q 032207 4 TKSENLILVTRDPMGIAYVTINRP-------K---SLNSLTRSMMADMAQAFKSLD-KDESVLVIILSGSG-RAFCSGVD 71 (145)
Q Consensus 4 ~~~~~~i~~~~~~~~v~~i~l~~~-------~---~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g-~~F~~G~d 71 (145)
..+++.+.++++ ++|++|+|||| + +.|+++.+|+.+|.+++++++ +++++|+|||+|.+ ++||+|.|
T Consensus 11 ~~~~~~~~~e~~-~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D 89 (550)
T PRK08184 11 PSQYRHWKLSFD-GPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN 89 (550)
T ss_pred CCCCceEEEEee-CCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence 455788999987 89999999964 3 899999999999999999999 78999999999975 99999999
Q ss_pred chhhhhhcccCcc---cHHH----HHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEecccee-eeec
Q 032207 72 LTSAEDVFKGDVK---DVET----DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHAR-LVCK 141 (145)
Q Consensus 72 l~~~~~~~~~~~~---~~~~----~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~-~G~~ 141 (145)
++++......... ...+ .+...+.++|||+||+|||+|+|||++|+++|||||++++ ++|++||++ +|+.
T Consensus 90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9986532111100 1111 1344677899999999999999999999999999999987 899999997 8887
Q ss_pred CC
Q 032207 142 IS 143 (145)
Q Consensus 142 ~g 143 (145)
|+
T Consensus 170 P~ 171 (550)
T PRK08184 170 PG 171 (550)
T ss_pred CC
Confidence 75
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.97 E-value=7.3e-32 Score=219.98 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=112.9
Q ss_pred CcEEEEEc-CCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhhcc-CCCeeEEEEEcCC-CcccccCC
Q 032207 8 NLILVTRD-PMGIAYVTINRPKSL-------------NSLTRSMMADMAQAFKSLDK-DESVLVIILSGSG-RAFCSGVD 71 (145)
Q Consensus 8 ~~i~~~~~-~~~v~~i~l~~~~~~-------------N~l~~~~~~~l~~~l~~~~~-~~~v~~vvl~g~g-~~F~~G~d 71 (145)
+++.++.+ +++|++||||||+++ |+|+.+|+++|.+++++++. |+++|+|||||.| +.||+|+|
T Consensus 260 ~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~D 339 (550)
T PRK08184 260 RHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAAD 339 (550)
T ss_pred EEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCC
Confidence 34454432 378999999999988 68999999999999999986 7999999999999 59999999
Q ss_pred chhhhhhcc---cCcccHHHHHHHHHhcCCccEEEeec-hhccHHh-HHHHHhcCEEEEe-------CCcEEeccceeee
Q 032207 72 LTSAEDVFK---GDVKDVETDTVAQMERCRKPIIGAIS-GFAVTAG-FEIALACDVLVAA-------KGAKFIDTHARLV 139 (145)
Q Consensus 72 l~~~~~~~~---~~~~~~~~~~~~~l~~~~kp~Ia~v~-G~a~GgG-~~l~l~~D~~ia~-------~~a~f~~pe~~~G 139 (145)
++....... ......+++.+.+|..+|||+||+|| |+|+||| ++|+++||+|||+ ++++|++||+++|
T Consensus 340 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~G 419 (550)
T PRK08184 340 ATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFG 419 (550)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECcccccc
Confidence 873221100 01112334567789999999999997 9999999 9999999999999 9999999999999
Q ss_pred ecCCC
Q 032207 140 CKISC 144 (145)
Q Consensus 140 ~~~g~ 144 (145)
+.|+.
T Consensus 420 l~p~~ 424 (550)
T PRK08184 420 LYPMV 424 (550)
T ss_pred CCCCC
Confidence 88763
No 87
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=192.07 Aligned_cols=129 Identities=32% Similarity=0.482 Sum_probs=116.4
Q ss_pred CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc---CcccHHHHHH
Q 032207 16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG---DVKDVETDTV 91 (145)
Q Consensus 16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~---~~~~~~~~~~ 91 (145)
+.+|.+|-||||.+.|+|+..|+++|.++++++..|+.+|+|+|++.- +.||+|+||++....... .+...++.++
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~ 117 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLF 117 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999974 999999999996654443 3455667788
Q ss_pred HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 92 AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 92 ~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
..+.++|.|+||+++|.++|||+||+|+||+|+|+++++|+++|+++++-||.
T Consensus 118 ~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGa 170 (291)
T KOG1679|consen 118 NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGA 170 (291)
T ss_pred HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCC
Confidence 89999999999999999999999999999999999999999999999766653
No 88
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=99.96 E-value=1.4e-28 Score=180.55 Aligned_cols=139 Identities=29% Similarity=0.483 Sum_probs=122.7
Q ss_pred CCCcEEEEEcCCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcc
Q 032207 6 SENLILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVK 84 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~-~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~ 84 (145)
.++.+.+++. |++.+|.++ ||+|.|+++.+++.++..+++.+.+|+++..++++|.|++||+|.|+..+......+..
T Consensus 5 ~~~~~vv~~~-~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 5 RYREIVVTRE-NGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred cccceEEEec-CCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 3556677776 999999999 99999999999999999999999999999999999999999999999987765544322
Q ss_pred c---HH-------HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceee-eecCCCC
Q 032207 85 D---VE-------TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL-VCKISCS 145 (145)
Q Consensus 85 ~---~~-------~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~-G~~~g~s 145 (145)
+ .. ..+...+..+|||+||.|||+|+|.|..+.-.||+++|+|++.|..|++++ -+|+|||
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~S 155 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCS 155 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcce
Confidence 1 11 125678889999999999999999999999999999999999999999999 7899998
No 89
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.93 E-value=8.3e-26 Score=172.42 Aligned_cols=137 Identities=25% Similarity=0.367 Sum_probs=119.4
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccCc-
Q 032207 6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGDV- 83 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~~- 83 (145)
....|.++.. +....|+||||+.+||+|.+|+..+.-.|..++.++.+++||+.|.+ +.||+|+|+...........
T Consensus 36 ~~~~VL~e~~-~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~ 114 (401)
T KOG1684|consen 36 SKDQVLVEGK-GCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKET 114 (401)
T ss_pred cCCceEEecC-CceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCc
Confidence 3467888887 89999999999999999999999999999999999999999999985 99999999986554333221
Q ss_pred ------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 84 ------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 84 ------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
......+...+..+.||.||.++|..+|||+.|+..--||||+|++.|.+||+.+|+-|.
T Consensus 115 ~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPD 180 (401)
T KOG1684|consen 115 PEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPD 180 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccC
Confidence 122344556788999999999999999999999999999999999999999999988775
No 90
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.93 E-value=2.6e-26 Score=165.07 Aligned_cols=137 Identities=31% Similarity=0.462 Sum_probs=115.9
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC--C-CcccccCCchhhhhh---
Q 032207 5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS--G-RAFCSGVDLTSAEDV--- 78 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g-~~F~~G~dl~~~~~~--- 78 (145)
..++.|.+++..++|+.|+||||+++|+|.+..+.||.+++..+..|+++-+|+|||. | +.||+|+|-+-....
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 4578899998768999999999999999999999999999999999999999999984 4 899999997653331
Q ss_pred cccCcccHH--HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeec
Q 032207 79 FKGDVKDVE--TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCK 141 (145)
Q Consensus 79 ~~~~~~~~~--~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~ 141 (145)
........+ .++-+.|+.+|||+||.|+|+++|||-.|-+.||+.||+++++|++.-.++|.-
T Consensus 95 ~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSF 159 (282)
T COG0447 95 VDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSF 159 (282)
T ss_pred cCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccc
Confidence 111111222 345567889999999999999999999999999999999999999988888543
No 91
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=160.51 Aligned_cols=130 Identities=27% Similarity=0.473 Sum_probs=116.1
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc----cc
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV----KD 85 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~----~~ 85 (145)
.+++.+ ++|-.|+|++|+|+|.++.+|+.+|.+.+....++.++|+|||+..|+.||+|.||+++......+. .+
T Consensus 34 g~~~~~-~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFq 112 (287)
T KOG1682|consen 34 GLVKEH-NGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQ 112 (287)
T ss_pred cccccc-cceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHH
Confidence 444554 8999999999999999999999999999999999999999999999999999999999876554332 23
Q ss_pred HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeee
Q 032207 86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVC 140 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~ 140 (145)
...+.+..|+++|.|+|+-|||.|..+|+.|..+||+++|+++++|..|-.++|+
T Consensus 113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGl 167 (287)
T KOG1682|consen 113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGL 167 (287)
T ss_pred HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceee
Confidence 3356778899999999999999999999999999999999999999999999975
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.70 E-value=1e-16 Score=114.52 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHH
Q 032207 36 SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115 (145)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~ 115 (145)
-.+++|.++++++++|+++|+|||++ +|.|.|+... ..+.+.+.++.+++||+||+++|.|.|+|+.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~---------~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~ 88 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTAS---------EVIRAELAAARAAGKPVVASGGGNAASGGYW 88 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHH---------HHHHHHHHHHHhCCCCEEEEECCchhHHHHH
Confidence 35789999999999999999999997 6888887652 2345567788889999999999999999999
Q ss_pred HHHhcCEEEEeCCcEEecccee
Q 032207 116 IALACDVLVAAKGAKFIDTHAR 137 (145)
Q Consensus 116 l~l~~D~~ia~~~a~f~~pe~~ 137 (145)
|+++||+++++++++|+.+.+.
T Consensus 89 la~a~D~i~a~~~a~~~~~G~~ 110 (177)
T cd07014 89 ISTPANYIVANPSTLVGSIGIF 110 (177)
T ss_pred HHHhCCEEEECCCCeEEEechH
Confidence 9999999999999999988654
No 93
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.67 E-value=5.1e-16 Score=113.77 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=84.0
Q ss_pred cEEEEEEcCC--CCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207 18 GIAYVTINRP--KSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME 95 (145)
Q Consensus 18 ~v~~i~l~~~--~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~ 95 (145)
+|++|.++.+ +..+.-+.-.+++|.++|+++.+|+++++|||+ .||.|+|+..+. .+.+.++.+.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~---------~~~~~l~~~~ 67 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE---------VIRAELAAAR 67 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH---------HHHHHHHHHH
Confidence 3566666543 123333455689999999999999999999998 799999997743 3345567788
Q ss_pred cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEe
Q 032207 96 RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFI 132 (145)
Q Consensus 96 ~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~ 132 (145)
.++||+|++++|.|.|+|+.|+++||++++++++.|+
T Consensus 68 ~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 68 AAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG 104 (211)
T ss_pred hCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence 8999999999999999999999999999999999987
No 94
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.56 E-value=5.7e-14 Score=103.15 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=74.7
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEe
Q 032207 26 RPKSLNS-LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGA 104 (145)
Q Consensus 26 ~~~~~N~-l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~ 104 (145)
++...|+ ++..++.+|.++|+++++|+++++|||+. +|.|.++... +.+.+.++.+.. +||+||+
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~---------~~l~~~l~~~~~-~KpViA~ 79 (214)
T cd07022 14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV---------FELADAIRAARA-GKPIVAF 79 (214)
T ss_pred CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH---------HHHHHHHHHHhc-CCCEEEE
Confidence 3333454 45789999999999999999999999975 4556655432 223334444444 6999999
Q ss_pred echhccHHhHHHHHhcCEEEEeCCcEEeccc
Q 032207 105 ISGFAVTAGFEIALACDVLVAAKGAKFIDTH 135 (145)
Q Consensus 105 v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe 135 (145)
++|.|.|+|+.++++||++++++++.|+..-
T Consensus 80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG 110 (214)
T cd07022 80 VNGLAASAAYWIASAADRIVVTPTAGVGSIG 110 (214)
T ss_pred ECCchhhHHHHHHhcCCEEEEcCCCeEEeee
Confidence 9999999999999999999999999987543
No 95
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.55 E-value=4.1e-14 Score=103.45 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=82.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR 98 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (145)
|++|.++.+-... ...++.+|.++++.+++|+++++|+|++ +|.|+|+... ..+.+.++.+..++
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~---------~~i~~~i~~~~~~~ 66 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS---------EEIYREIRRLRKAK 66 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH---------HHHHHHHHHHHhcC
Confidence 5666665432101 3689999999999999999999999998 4778888652 23455677888889
Q ss_pred ccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207 99 KPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDT 134 (145)
Q Consensus 99 kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~p 134 (145)
||+||+++|.|.|+|+.++++||++++++++.|+..
T Consensus 67 kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 67 KPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred CcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence 999999999999999999999999999999998754
No 96
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.51 E-value=1.2e-13 Score=99.42 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=76.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE-cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS-GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC 97 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~-g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (145)
|++|+++. .++......+.+.++.+++++ ++.|+|. ..+ |+++.. ..+++..|..+
T Consensus 1 ~~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~------------~~~i~~~l~~~ 57 (187)
T cd07020 1 VYVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS------------TREIVQAILAS 57 (187)
T ss_pred CEEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH------------HHHHHHHHHhC
Confidence 35666653 356777889999999998665 7777776 322 233322 23556678889
Q ss_pred CccEEEeec---hhccHHhHHHHHhcCEEEEeCCcEEeccceeee
Q 032207 98 RKPIIGAIS---GFAVTAGFEIALACDVLVAAKGAKFIDTHARLV 139 (145)
Q Consensus 98 ~kp~Ia~v~---G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G 139 (145)
|||+|++++ |+|.|+|+.++++||+++++++++|+.+++..+
T Consensus 58 ~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~ 102 (187)
T cd07020 58 PVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAI 102 (187)
T ss_pred CCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEecccccc
Confidence 999999999 999999999999999999999999999998854
No 97
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.42 E-value=1.3e-12 Score=91.64 Aligned_cols=92 Identities=24% Similarity=0.318 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHH
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTA 112 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~Gg 112 (145)
++..++++|.+.|+.+++|+.++.|+|+. .|.|.++.. ...+...+..++||+|+.++|.|.++
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~------------~~~i~~~l~~~~kpvva~~~g~~~s~ 71 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDA------------GMNIVDALQASRKPVIAYVGGQAASA 71 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHH------------HHHHHHHHHHhCCCEEEEECChhHHH
Confidence 55688999999999999999999999976 466666543 23456677788899999999999999
Q ss_pred hHHHHHhcCEEEEeCCcEEeccceeeee
Q 032207 113 GFEIALACDVLVAAKGAKFIDTHARLVC 140 (145)
Q Consensus 113 G~~l~l~~D~~ia~~~a~f~~pe~~~G~ 140 (145)
|+.|+++||.|++.+++.|.+..+..+.
T Consensus 72 g~~la~~~d~~~~~~~a~~~~~g~~~~~ 99 (161)
T cd00394 72 GYYIATAANKIVMAPGTRVGSHGPIGGY 99 (161)
T ss_pred HHHHHhCCCEEEECCCCEEEEeeeEEec
Confidence 9999999999999999999987776543
No 98
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.39 E-value=2.6e-12 Score=93.94 Aligned_cols=95 Identities=21% Similarity=0.399 Sum_probs=75.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR 98 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (145)
|++|.++.+=. ...++|.+.|+.+.+|+++++|||+.. |.|+++.. ..++...|.+++
T Consensus 2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~------------~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVA------------SEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHH------------HHHHHHHHHHhc
Confidence 66677765431 335789999999999999999999974 66766653 234455666666
Q ss_pred --ccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccc
Q 032207 99 --KPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTH 135 (145)
Q Consensus 99 --kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe 135 (145)
||+|+.++|.|.|+|+.|+++||.+++++++.++..-
T Consensus 60 ~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iG 98 (207)
T TIGR00706 60 AKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIG 98 (207)
T ss_pred CCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeee
Confidence 9999999999999999999999999999999886543
No 99
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.27 E-value=1.8e-11 Score=90.37 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccH
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVT 111 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G 111 (145)
.-+...+.+|.+.|+++.+|+++++|||+..+..| ++.+++++ .+.++++...+||+||.++| +.+
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el------------~~~i~~~~~~~kpVia~~~~-~~s 90 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL------------RQALERFRASGKPVIAYADG-YSQ 90 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH------------HHHHHHHHHhCCeEEEEeCC-CCc
Confidence 34567889999999999999999999999988777 66565553 44566677789999999998 889
Q ss_pred HhHHHHHhcCEEEEeCCcEEecc
Q 032207 112 AGFEIALACDVLVAAKGAKFIDT 134 (145)
Q Consensus 112 gG~~l~l~~D~~ia~~~a~f~~p 134 (145)
+|+.++++||.+++.+.+.|+..
T Consensus 91 ggy~lasaad~I~a~p~~~vg~i 113 (222)
T cd07018 91 GQYYLASAADEIYLNPSGSVELT 113 (222)
T ss_pred hhhhhhhhCCEEEECCCceEEee
Confidence 99999999999999999998874
No 100
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.13 E-value=4.6e-10 Score=93.27 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=78.8
Q ss_pred CCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC---CCcccccCCchhhhhhcccCcccHHHHH
Q 032207 16 PMGIAYVTINRPK--SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS---GRAFCSGVDLTSAEDVFKGDVKDVETDT 90 (145)
Q Consensus 16 ~~~v~~i~l~~~~--~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~---g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (145)
+++|++|+++.+- ..+..+....+.+.+.++++.+|+++|+|||+-. |..|++ +..++.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----------------e~i~~~ 370 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----------------EIIRRE 370 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----------------HHHHHH
Confidence 3789999999763 2344444456788999999999999999999953 233432 223445
Q ss_pred HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEE
Q 032207 91 VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131 (145)
Q Consensus 91 ~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f 131 (145)
+.++...+||+|+.++|.|.+||+.++++||.++|++.+.+
T Consensus 371 i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~ 411 (584)
T TIGR00705 371 LARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTIT 411 (584)
T ss_pred HHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCee
Confidence 56677788999999999999999999999999999999987
No 101
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.13 E-value=3e-10 Score=79.72 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHH
Q 032207 36 SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115 (145)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~ 115 (145)
...+++.+.|+.++.++.+ .+.|.+.|+...+| ..++..|..+|||+|+.++|.|.|+|+.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~~------------------~~i~~~i~~~~~pvi~~v~g~a~s~g~~ 75 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFAG------------------LAIYNALKRHKGKVTVKIDGLAASAASV 75 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHHH------------------HHHHHHHHhcCCCEEEEEcchHHhHHHH
Confidence 5677888889998877443 44555554432222 3467778889999999999999999999
Q ss_pred HHHhcCEEEEeCCcEEeccceeeeec
Q 032207 116 IALACDVLVAAKGAKFIDTHARLVCK 141 (145)
Q Consensus 116 l~l~~D~~ia~~~a~f~~pe~~~G~~ 141 (145)
++++||+|+++++++|.+.+...+.+
T Consensus 76 ia~a~d~~~~~~~a~~~~~~~~~~~~ 101 (160)
T cd07016 76 IAMAGDEVEMPPNAMLMIHNPSTGAA 101 (160)
T ss_pred HHhcCCeEEECCCcEEEEECCccccC
Confidence 99999999999999999877665543
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.13 E-value=7.1e-10 Score=79.32 Aligned_cols=97 Identities=22% Similarity=0.240 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCc
Q 032207 20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRK 99 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~k 99 (145)
.+|.++. .+++...+.|.+.|+++++++ ++.|++.=. |.|+++ .....++..|..+|+
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v------------~~~~~I~~~l~~~~~ 59 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRV------------DSALEIVDLILNSPI 59 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCH------------HHHHHHHHHHHhCCC
Confidence 4566643 366778888999999999876 666666532 112222 234567788899999
Q ss_pred cEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceee
Q 032207 100 PIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL 138 (145)
Q Consensus 100 p~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~ 138 (145)
|+|+.++|.|.++|+.++++||++++++++.|+.++.-.
T Consensus 60 pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~ 98 (178)
T cd07021 60 PTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIP 98 (178)
T ss_pred CEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEc
Confidence 999999999999999999999999999999999886654
No 103
>PRK10949 protease 4; Provisional
Probab=98.30 E-value=5.7e-06 Score=69.39 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=75.2
Q ss_pred CCcEEEEEEcCCC-----CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHH
Q 032207 16 PMGIAYVTINRPK-----SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDT 90 (145)
Q Consensus 16 ~~~v~~i~l~~~~-----~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (145)
++.|++|.++..- ..+.++. +.+.+.|+++.+|+++|+|||+-..+ |+.... .+..++.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a---------se~i~~~ 388 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA---------SEVIRAE 388 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH---------HHHHHHH
Confidence 3679999987431 1233443 57888899999999999999996532 111111 2334555
Q ss_pred HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec
Q 032207 91 VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 91 ~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
+.+++...||+|+.+.+.|..||+-++++||.++|.+.+..+.
T Consensus 389 i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGS 431 (618)
T PRK10949 389 LAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGS 431 (618)
T ss_pred HHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceee
Confidence 6666777899999999999999999999999999999876544
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.24 E-value=1.5e-05 Score=56.80 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCc
Q 032207 20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRK 99 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~k 99 (145)
.+|.++. .++....+.|.+.++.++++ ..+.|+|.=. |.|+.+. ....++..|...++
T Consensus 2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~------------~~~~I~~~i~~~~~ 59 (172)
T cd07015 2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRAD------------AAGNIVQRIQQSKI 59 (172)
T ss_pred EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHH------------HHHHHHHHHHhcCc
Confidence 4555542 36777888889999998865 4677766532 2222222 22445677788999
Q ss_pred cEEEeec---hhccHHhHHHHHhcCEEEEeCCcEEecccee
Q 032207 100 PIIGAIS---GFAVTAGFEIALACDVLVAAKGAKFIDTHAR 137 (145)
Q Consensus 100 p~Ia~v~---G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~ 137 (145)
|+++.+. |.|..+|.-++++||.+++.+++.++.....
T Consensus 60 pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi 100 (172)
T cd07015 60 PVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 100 (172)
T ss_pred CEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEcccc
Confidence 9999999 9999999999999999999999999876654
No 105
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.06 E-value=2.7e-05 Score=60.57 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=74.7
Q ss_pred cEEEEEEcCCCC--CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207 18 GIAYVTINRPKS--LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME 95 (145)
Q Consensus 18 ~v~~i~l~~~~~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~ 95 (145)
.|++|.++.+=. .+.+..--.+.+.+.|+++..++.++.|+|+=. |.|+.... .+...+.++++.
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a---------s~~i~~~l~~l~ 126 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA---------SELIARALKRLR 126 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH---------HHHHHHHHHHHh
Confidence 588887775421 111112246677888899999999999988742 11222211 233445555665
Q ss_pred cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeee
Q 032207 96 RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLV 139 (145)
Q Consensus 96 ~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G 139 (145)
.-. |+++.+.+.|..||+-+++++|.+||++.+..+---+..+
T Consensus 127 ~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~ 169 (317)
T COG0616 127 AKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG 169 (317)
T ss_pred hcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe
Confidence 555 9999999999999999999999999999998876555544
No 106
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.05 E-value=7.9e-05 Score=56.33 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.+.++.+..+++.++++...++..+-.+ |.. .|+++ ....++.+.+.+++.++++.|...|
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~IdLi-i~T------pGG~v------------~AA~~I~~~l~~~~~~v~v~VP~~A 129 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPIDLI-IHT------PGGLV------------DAAEQIARALREHPAKVTVIVPHYA 129 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceEEE-EEC------CCCcH------------HHHHHHHHHHHhCCCCEEEEECccc
Confidence 4568889999999999998877665333 433 23333 2335567788889999999999999
Q ss_pred cHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207 110 VTAGFEIALACDVLVAAKGAKFIDTHARLVCKI 142 (145)
Q Consensus 110 ~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~ 142 (145)
..+|.-++++||-+++.+.+.++-.+.++|-.|
T Consensus 130 ~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~p 162 (285)
T PF01972_consen 130 MSAGTLIALAADEIVMGPGAVLGPIDPQIGQYP 162 (285)
T ss_pred ccHHHHHHHhCCeEEECCCCccCCCCccccCCC
Confidence 999999999999999999999999888885433
No 107
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.00 E-value=0.0002 Score=55.10 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=73.6
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCC----CeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH
Q 032207 18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDE----SVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ 93 (145)
Q Consensus 18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~----~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~ 93 (145)
.|+.+-.+..-..-+++....+.+..+++.+.++. .+-+|.|.-.|+. .+.+-..... . .......+.+
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~~~L~-~-~a~i~~~~~~ 141 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEANAGLA-A-IAEIMRAIVD 141 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchHHHHH-H-HHHHHHHHHH
Confidence 36666666665678899999999999999998765 2556666544332 3322110000 0 0111222334
Q ss_pred HhcCCccEEEeechh--ccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207 94 MERCRKPIIGAISGF--AVTAGFEIALACDVLVAAKGAKFIDT 134 (145)
Q Consensus 94 l~~~~kp~Ia~v~G~--a~GgG~~l~l~~D~~ia~~~a~f~~p 134 (145)
+... +|+|+++-|+ |+||+...+..||++|+++++++++.
T Consensus 142 ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla 183 (301)
T PRK07189 142 LRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS 183 (301)
T ss_pred HhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence 4444 9999999999 99999999999999999999877663
No 108
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.99 E-value=3.4e-05 Score=54.38 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
++..+.+++.+.|..++.++..+.|+|. +.|+ ++ .....++..|...++|+++.+.|.|.
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v------------~~~~~i~~~i~~~~~~v~~~~~g~aa 70 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DV------------FAGMAIYDTIKFIKADVVTIIDGLAA 70 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cH------------HHHHHHHHHHHhcCCCceEEEEeehh
Confidence 5678899999999999988766766665 3333 22 12345667788889999999999999
Q ss_pred HHhHHHHHhcC--EEEEeCCcEEec
Q 032207 111 TAGFEIALACD--VLVAAKGAKFID 133 (145)
Q Consensus 111 GgG~~l~l~~D--~~ia~~~a~f~~ 133 (145)
++|.-+++++| .|++.++++|.+
T Consensus 71 S~~~~i~~a~~~g~r~~~p~a~~~i 95 (162)
T cd07013 71 SMGSVIAMAGAKGKRFILPNAMMMI 95 (162)
T ss_pred hHHHHHHHcCCCCcEEEecCEEEEE
Confidence 99999999999 688888887765
No 109
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.84 E-value=0.00061 Score=51.90 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccC----CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHH
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKD----ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQM 94 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~----~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l 94 (145)
|+.+-.+..-..-+++...-+.+..+++.+.+| ..+-+|.+.-.|+ ..+++-..... .. ........++
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~~L~-~~-a~i~~~~~~l 133 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANAGLI-AI-AEIMRAILDA 133 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHHHHH-HH-HHHHHHHHHH
Confidence 666666665567788888889999999998762 2234665554433 23332111100 00 1112223344
Q ss_pred hcCCccEEEeechh--ccHHhHHHHHhcCEEEEeCCcEEec
Q 032207 95 ERCRKPIIGAISGF--AVTAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 95 ~~~~kp~Ia~v~G~--a~GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
... .|+|+++-|+ |.||+..++..||++|+++++++++
T Consensus 134 s~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~ 173 (274)
T TIGR03133 134 RAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL 173 (274)
T ss_pred hCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence 444 9999999999 8999999999999999999987765
No 110
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.81 E-value=4.5e-06 Score=65.19 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc---CcccHHHHHHHH
Q 032207 18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG---DVKDVETDTVAQ 93 (145)
Q Consensus 18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~---~~~~~~~~~~~~ 93 (145)
++..+.|+ ++ .|..|.++..+|..-++++..+..+++..+|+.. ..|++|.|..++.-.... ..+-++++++..
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~ 143 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA 143 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence 68888888 55 6999999999999999999999999999999987 999999999886644332 223456788899
Q ss_pred HhcCCccEEEeechhccHHh--HHHHHhcCEEEEeC
Q 032207 94 MERCRKPIIGAISGFAVTAG--FEIALACDVLVAAK 127 (145)
Q Consensus 94 l~~~~kp~Ia~v~G~a~GgG--~~l~l~~D~~ia~~ 127 (145)
.+.++.|+.+++||.+--++ +-++.+|+||+...
T Consensus 144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~ 179 (380)
T KOG1683|consen 144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRL 179 (380)
T ss_pred cCCCchHHHHHHhcccccCCccEEeccCCceEEEec
Confidence 99999999999999999998 88999999999873
No 111
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.79 E-value=0.00058 Score=53.31 Aligned_cols=103 Identities=12% Similarity=0.142 Sum_probs=67.1
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhc
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMER 96 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~ 96 (145)
+.|++|.++.+-..+. ...+.+++...++.+..+ +.|||+-.. .|+.+.. .......+.++..
T Consensus 90 ~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~---------s~~a~~~l~~lr~ 152 (330)
T PRK11778 90 PRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHG---------YGLAASQLQRLRD 152 (330)
T ss_pred CeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhH---------HHHHHHHHHHHHh
Confidence 6799999986532222 223456666666665533 466666431 1222111 0011222456677
Q ss_pred CCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccce
Q 032207 97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHA 136 (145)
Q Consensus 97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~ 136 (145)
..||+|+.+++.|..||+-++++||.++|.+.+..+..-+
T Consensus 153 ~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGV 192 (330)
T PRK11778 153 AGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGV 192 (330)
T ss_pred cCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeee
Confidence 8899999999999999999999999999999888765443
No 112
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.66 E-value=0.00055 Score=48.86 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 33 LTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
++.++...+.+.|..++..+..+ .+.|.+. |+++.. ...++..|..++.|+++.+.|.|.
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~------------g~~i~~~i~~~~~~v~t~~~G~aa 86 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA------------GLAIYDAIRSSKAPVTTVVLGLAA 86 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH------------HHHHHHHHHHSSSEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH------------HHHHHHHHHhcCCCeEEEEeCccc
Confidence 68899999999888774332222 3334443 333322 345677888899999999999999
Q ss_pred HHhHHHHHhcCE--EEEeCCcEEeccceeeee
Q 032207 111 TAGFEIALACDV--LVAAKGAKFIDTHARLVC 140 (145)
Q Consensus 111 GgG~~l~l~~D~--~ia~~~a~f~~pe~~~G~ 140 (145)
+.|.-++++|+. |++.+++.|.+-+...+.
T Consensus 87 Saa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~ 118 (182)
T PF00574_consen 87 SAATLIFLAGDKGKRYASPNSRFMIHQPSTGS 118 (182)
T ss_dssp THHHHHHHTSSTTTEEE-TT-EEEES-CEEEE
T ss_pred cceehhhhcCCcCceeeeecCEEEeecceeec
Confidence 999999999999 899999999876665543
No 113
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=97.53 E-value=0.00031 Score=49.84 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
++.....++...+..+..++..+.|+|. +.|+ ++.. ...++..|...+.|+++.+.|.|.
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~~------------~~~i~~~l~~~~~~v~t~~~g~aa 79 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVTA------------GLAIYDTMQYIKPPVSTICLGLAA 79 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHHH------------HHHHHHHHHhcCCCEEEEEEeEeh
Confidence 5778889999999999877654555443 4333 2221 234556677789999999999999
Q ss_pred HHhHHHHHhcC--EEEEeCCcEEeccceee
Q 032207 111 TAGFEIALACD--VLVAAKGAKFIDTHARL 138 (145)
Q Consensus 111 GgG~~l~l~~D--~~ia~~~a~f~~pe~~~ 138 (145)
++|.-+++++| .|++.+++.|.+-+...
T Consensus 80 S~~~~i~~~g~~~~r~~~~~a~~~~h~~~~ 109 (171)
T cd07017 80 SMGALLLAAGTKGKRYALPNSRIMIHQPLG 109 (171)
T ss_pred hHHHHHHHcCCCCCEEEccchHHHHcCCCc
Confidence 99999999999 79999999887655443
No 114
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.53 E-value=0.00072 Score=56.72 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHHH
Q 032207 37 MMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI 116 (145)
Q Consensus 37 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l 116 (145)
.+.++.+.++++.+|+.+++|||.-.. +.|..+.. .+.+.+.+..+....||+||..++.+ -+|+-+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~---------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~Yyl 143 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPH---------LVEIGSALSEFKDSGKPVYAYGTNYS-QGQYYL 143 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHH---------HHHHHHHHHHHHhcCCeEEEEEcccc-chhhhh
Confidence 578999999999999999999999753 11333222 12345556666677899999988765 678999
Q ss_pred HHhcCEEEEeCCcEEec
Q 032207 117 ALACDVLVAAKGAKFID 133 (145)
Q Consensus 117 ~l~~D~~ia~~~a~f~~ 133 (145)
+.+||-+++.+...++.
T Consensus 144 As~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 144 ASFADEIILNPMGSVDL 160 (584)
T ss_pred hhhCCEEEECCCceEEe
Confidence 99999999998876644
No 115
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.48 E-value=0.0032 Score=47.62 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
...++++-.+...+.++.+.+.. +-+|-|.-.++.+. |.+-+ .........+.+..+...++|+|+++-|.|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE------~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~ 147 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAE------ERGQGEAIARNLMEMSDLKVPIIAIIIGEG 147 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHH------hccHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 46678899999999999988653 55665554444442 32211 111223445566777889999999999999
Q ss_pred cHHhHHHHHhcCEEEEeCCcEEec
Q 032207 110 VTAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 110 ~GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
.|||.-....||++++.+++.++.
T Consensus 148 ~gGgA~a~~~~D~v~m~~~a~~~v 171 (256)
T PRK12319 148 GSGGALALAVADQVWMLENTMYAV 171 (256)
T ss_pred CcHHHHHhhcCCEEEEecCceEEE
Confidence 999888888999999999988764
No 116
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.44 E-value=0.0056 Score=46.97 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=72.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR 98 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (145)
|+.+..|..-..-+++...-+.+..+++.+.+.. +-+|.+...|+. -+.+-..... . ..+....+.++....
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~-lPlV~l~dSgGa-----RmqEg~~sL~-~-~ak~~~~~~~~~~~~ 193 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDN-CPLIIFSASGGA-----RMQEALLSLM-Q-MAKTSAALAKMSERG 193 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCc-----ccccchhHHH-h-HHHHHHHHHHHHcCC
Confidence 6666666555678899999999999999998553 567777665443 2221000000 0 011122334566678
Q ss_pred ccEEEeechhccHHhHH-HHHhcCEEEEeCCcEEecc
Q 032207 99 KPIIGAISGFAVTAGFE-IALACDVLVAAKGAKFIDT 134 (145)
Q Consensus 99 kp~Ia~v~G~a~GgG~~-l~l~~D~~ia~~~a~f~~p 134 (145)
.|.|+++.|+|.||+.. +++.+|++||.+++.+++.
T Consensus 194 vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~a 230 (285)
T TIGR00515 194 LPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFA 230 (285)
T ss_pred CCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcC
Confidence 99999999999999655 6679999999999877653
No 117
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.38 E-value=0.0007 Score=49.60 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEEE--EcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVIIL--SGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.++..+..++.+.|..++..+..+.|.| -+.|+ ++.. ...++..|..++.|+++.+.|.|
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v~~------------g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYINSPGG------SVTA------------GDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCC------cHHH------------HHHHHHHHHhcCCCcEEEEEeeh
Confidence 4788999999999999987553344433 34343 3222 23456777788889999999999
Q ss_pred cHHhHHHHHhcC--EEEEeCCcEEeccce
Q 032207 110 VTAGFEIALACD--VLVAAKGAKFIDTHA 136 (145)
Q Consensus 110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~ 136 (145)
.+.|.-++++|| .|++.+++.|.+-..
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p 133 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQP 133 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCc
Confidence 999999999999 599999998876544
No 118
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.33 E-value=0.0052 Score=47.34 Aligned_cols=108 Identities=11% Similarity=0.125 Sum_probs=71.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR 98 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (145)
|+.+-.+..-...+++...-+.+.++++.+.+.. +-+|.|...|+ +.+.+-..... . ..+....+.++....
T Consensus 123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~dsgG-----armqEgi~sL~-~-~ak~~~a~~~~~~a~ 194 (292)
T PRK05654 123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSASGG-----ARMQEGLLSLM-Q-MAKTSAALKRLSEAG 194 (292)
T ss_pred EEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-----cchhhhhhHHH-h-HHHHHHHHHHHHcCC
Confidence 5555555444678999999999999999998664 66777765543 22222000000 0 011222344566678
Q ss_pred ccEEEeechhccHHhHH-HHHhcCEEEEeCCcEEecc
Q 032207 99 KPIIGAISGFAVTAGFE-IALACDVLVAAKGAKFIDT 134 (145)
Q Consensus 99 kp~Ia~v~G~a~GgG~~-l~l~~D~~ia~~~a~f~~p 134 (145)
.|.|+++.|+|.||+.. +++.+|++||.+++.+++.
T Consensus 195 vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~a 231 (292)
T PRK05654 195 LPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFA 231 (292)
T ss_pred CCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEec
Confidence 99999999999999654 5777999999998877653
No 119
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.31 E-value=0.0015 Score=47.61 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEE--EEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVII--LSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF 108 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~ 108 (145)
..++..+.+.+...|..++.++..+-|. |-+.|+ ++. ....++..|...+.|+++.+.|.
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG------~v~------------~g~~I~d~i~~~~~~v~t~~~G~ 99 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG------SVT------------AGLAIYDTMQFIKPDVSTICIGQ 99 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC------cHH------------HHHHHHHHHHhcCCCEEEEEEeE
Confidence 3467888999999999888654333333 334332 222 22345667777888999999999
Q ss_pred ccHHhHHHHHhcC--EEEEeCCcEEecc
Q 032207 109 AVTAGFEIALACD--VLVAAKGAKFIDT 134 (145)
Q Consensus 109 a~GgG~~l~l~~D--~~ia~~~a~f~~p 134 (145)
|.+.|..++++++ .|++.++++|.+-
T Consensus 100 aaS~a~~I~~ag~~~~r~~~p~s~imih 127 (200)
T PRK00277 100 AASMGAFLLAAGAKGKRFALPNSRIMIH 127 (200)
T ss_pred eccHHHHHHhcCCCCCEEEcCCceEEec
Confidence 9999999999754 6788877777653
No 120
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.26 E-value=0.0031 Score=51.90 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=72.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccC--CchhhhhhcccCcccHHHHHHHHHhc
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGV--DLTSAEDVFKGDVKDVETDTVAQMER 96 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~--dl~~~~~~~~~~~~~~~~~~~~~l~~ 96 (145)
|.++..+..-...+++....+.+..+++.+.++. +-+|.|.- |.|. ++++-...... .........++..
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~l~~--~g~i~~~~~~~~~ 130 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVESLMG--MGRIFRAIARLSG 130 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHHHHH--HHHHHHHHHHHHT
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhhhhh--hHHHHHHHHHHhc
Confidence 5555555555678899999999999999998775 45555544 2333 34332211110 1112233445666
Q ss_pred CCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207 97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID 133 (145)
Q Consensus 97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~ 133 (145)
..|+|+++.|+|.|||.-++..||++|+.++ +.+.+
T Consensus 131 -~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l 167 (493)
T PF01039_consen 131 -GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFL 167 (493)
T ss_dssp -TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEES
T ss_pred -CCCeEEEEccccccchhhcccccCccccCccceEEEe
Confidence 9999999999999999999999999999998 88766
No 121
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.25 E-value=0.0075 Score=46.95 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
...++++-.+...+.++.+++.. +-+|-|.-.++++. |.+-.+ ........+.+..+.....|+|++|-|.+
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~------~G~~~aiar~l~~~a~~~VP~IsVViGeg 203 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEK------LGQGEAIAVNLREMFSFEVPIICTIIGEG 203 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHH------HhHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence 46688999999999999998653 45555544444443 322211 01123344556667889999999999999
Q ss_pred cHHhHHHHHhcCEEEEeCCcEEec
Q 032207 110 VTAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 110 ~GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
.|||.-....||++++.+++.++.
T Consensus 204 gsGGAlal~~aD~V~m~e~a~~sV 227 (322)
T CHL00198 204 GSGGALGIGIGDSIMMLEYAVYTV 227 (322)
T ss_pred cHHHHHhhhcCCeEEEeCCeEEEe
Confidence 888865455699999999998764
No 122
>PRK10949 protease 4; Provisional
Probab=97.21 E-value=0.0023 Score=53.99 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHHH
Q 032207 37 MMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI 116 (145)
Q Consensus 37 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l 116 (145)
.+.++.++++++.+|+.+++|||.-.+.. |..+.. .+.+.+.+.++....||+||..+.. .-+++-|
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~---------~~eI~~ai~~fk~sGKpVvA~~~~~-~s~~YyL 162 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS---------MQYIGKALREFRDSGKPVYAVGDSY-SQGQYYL 162 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH---------HHHHHHHHHHHHHhCCeEEEEecCc-cchhhhh
Confidence 45689999999999999999999975321 111111 1234555666777789999864444 4678999
Q ss_pred HHhcCEEEEeCCcEEec
Q 032207 117 ALACDVLVAAKGAKFID 133 (145)
Q Consensus 117 ~l~~D~~ia~~~a~f~~ 133 (145)
+.+||-+++.+...+++
T Consensus 163 ASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 163 ASFANKIYLSPQGVVDL 179 (618)
T ss_pred hhhCCEEEECCCceEEE
Confidence 99999999998876654
No 123
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.17 E-value=0.003 Score=45.95 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEE--EEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVII--LSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
++..+...+.+.|..++..+..+.|. |-+.|+ ++.. ...++..|...+.|+++.+.|.|.
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v~a------------g~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEGG------DIDA------------GFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CHHH------------HHHHHHHHHhCCCCEEEEEEeeeH
Confidence 67788889898888877633233333 334333 3221 234567788899999999999999
Q ss_pred HHhHHHHHhcCE--EEEeCCcEEec
Q 032207 111 TAGFEIALACDV--LVAAKGAKFID 133 (145)
Q Consensus 111 GgG~~l~l~~D~--~ia~~~a~f~~ 133 (145)
+.|.-++++||- |++.++++|..
T Consensus 94 SaaslIl~ag~~~~R~~~p~s~imi 118 (197)
T PRK14512 94 SAAALIFLAAKKESRFSLPNARYLL 118 (197)
T ss_pred hHHHHHHhcCCcCceeECCCCcEEE
Confidence 999999999985 89999888743
No 124
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.16 E-value=0.011 Score=46.09 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.-+++++-.+...+.++.+++- .+-+|-|.-.++++. |.+-.+ ........+.+..+....+|+|++|-|.+
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~------~G~~~aia~~l~~~a~~~VP~IsVIiGeg 200 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE------RGQSEAIARNLREMARLKVPIICTVIGEG 200 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh------ccHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4568899999999999988855 356666655544443 332221 11223445667778899999999999999
Q ss_pred cHHhHHHHHhcCEEEEeCCcEEec
Q 032207 110 VTAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 110 ~GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
.|||.--...||++++.+++.++.
T Consensus 201 ~sGGAla~~~aD~v~m~~~A~~sv 224 (319)
T PRK05724 201 GSGGALAIGVGDRVLMLEYSTYSV 224 (319)
T ss_pred cHHHHHHHhccCeeeeecCceEee
Confidence 877765555699999999998864
No 125
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.16 E-value=0.02 Score=44.16 Aligned_cols=108 Identities=9% Similarity=0.078 Sum_probs=70.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH-HhcC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ-MERC 97 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~-l~~~ 97 (145)
|+...++..=..-+++...-+.+.++++.+.+.. +-+|.+...|+ +.+++-..... .. .+....+.+ ...-
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGG-----ARmQEg~~sL~-qm-ak~saa~~~~~~~~ 206 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGG-----ARMQEGSLSLM-QM-AKISSALYDYQSNK 206 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC-----ccccccchhhh-hh-HHHHHHHHHHHHcC
Confidence 6666676665678899999999999999998664 55666665443 23322110000 00 111111223 2246
Q ss_pred CccEEEeechhccHHhHHH-HHhcCEEEEeCCcEEecc
Q 032207 98 RKPIIGAISGFAVTAGFEI-ALACDVLVAAKGAKFIDT 134 (145)
Q Consensus 98 ~kp~Ia~v~G~a~GgG~~l-~l~~D~~ia~~~a~f~~p 134 (145)
..|.|+++.|+|.||+... ++.+|++|+.+++.+++.
T Consensus 207 ~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfA 244 (296)
T CHL00174 207 KLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFA 244 (296)
T ss_pred CCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEee
Confidence 7999999999999998765 667999999888876653
No 126
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.01 E-value=0.018 Score=44.83 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.-.++++-.+...+.++.+++-. +-+|-|.-.++++. |.+.++. .......+.+..+....+|+|++|-|.|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTpGa~~-g~~aE~~------G~~~aia~~l~a~s~~~VP~IsVViGeg 200 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDTPGAYP-GIGAEER------GQSEAIARNLREMARLGVPVICTVIGEG 200 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCCC-CHHHHHH------HHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence 46688999999999999988653 45555554444333 3222211 1123345566677889999999999999
Q ss_pred cHHhHHHHHhcCEEEEeCCcEEec
Q 032207 110 VTAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 110 ~GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
.|||.--...||++++.+++.++.
T Consensus 201 gsGGAla~~~aD~v~m~~~a~~sV 224 (316)
T TIGR00513 201 GSGGALAIGVGDKVNMLEYSTYSV 224 (316)
T ss_pred ccHHHhhhccCCEEEEecCceEEe
Confidence 777765444699999999988764
No 127
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0085 Score=48.25 Aligned_cols=96 Identities=18% Similarity=0.290 Sum_probs=74.8
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE-cCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS-GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME 95 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~-g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~ 95 (145)
+.|..+.++ +.+++...+.+.+.++.++++.. .++|+. ..+ ....+...+..+.+.
T Consensus 26 ~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTP-----------------GGl~~sm~~iv~~i~ 82 (436)
T COG1030 26 KKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTP-----------------GGLLDSMRQIVRAIL 82 (436)
T ss_pred CeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCC-----------------CchHHHHHHHHHHHH
Confidence 568888885 45899999999999999997763 344433 222 123456788899999
Q ss_pred cCCccEEEeech---hccHHhHHHHHhcCEEEEeCCcEEeccc
Q 032207 96 RCRKPIIGAISG---FAVTAGFEIALACDVLVAAKGAKFIDTH 135 (145)
Q Consensus 96 ~~~kp~Ia~v~G---~a~GgG~~l~l~~D~~ia~~~a~f~~pe 135 (145)
+.|.|++..+.= +|..+|.-++++||+..+++.+.++-..
T Consensus 83 ~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~ 125 (436)
T COG1030 83 NSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAAT 125 (436)
T ss_pred cCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccc
Confidence 999998877753 5999999999999999999999887544
No 128
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.87 E-value=0.025 Score=48.29 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.-+.++.-++...+.++.++... +-+|-|.-.++++. |...+.. .......+.+..+....+|+|++|-|.|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe~------Gq~~aIArnl~amasl~VP~ISVViGeg 291 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEEL------GQGEAIAHNLRTMFGLKVPIVSIVIGEG 291 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHHH------hHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 45778888999999999888653 45555544433332 3222221 1123345566777899999999999999
Q ss_pred cHHhHHHHHhcCEEEEeCCcEEec
Q 032207 110 VTAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 110 ~GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
.|||.-....||++++.+++.++.
T Consensus 292 gSGGAlA~g~aD~VlMle~A~~sV 315 (762)
T PLN03229 292 GSGGALAIGCANKLLMLENAVFYV 315 (762)
T ss_pred chHHHHHhhcCCEEEEecCCeEEe
Confidence 888877777799999999987653
No 129
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.75 E-value=0.034 Score=44.73 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
.+++++-.+...+.++.+++.. +-+|-|.-.++++ .|.+.++ ........+.+..+....+|+|++|-|.+.
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe------~Gqa~aIAr~l~ams~l~VPiISVViGeGg 271 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEE------LGQGEAIAFNLREMFGLRVPIIATVIGEGG 271 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHH------HhHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 5688999999999999998653 4555555444333 3322222 111233455667788999999999999996
Q ss_pred HHhHHHHHhcCEEEEeCCcEEec
Q 032207 111 TAGFEIALACDVLVAAKGAKFID 133 (145)
Q Consensus 111 GgG~~l~l~~D~~ia~~~a~f~~ 133 (145)
+||.-....+|++++.+++.++.
T Consensus 272 SGGAlalg~aD~VlMle~A~ysV 294 (431)
T PLN03230 272 SGGALAIGCGNRMLMMENAVYYV 294 (431)
T ss_pred cHHHHHhhcCCEEEEecCCEEEe
Confidence 66654445689999999987754
No 130
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.64 E-value=0.045 Score=45.43 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=67.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHH--HHhc
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVA--QMER 96 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~--~l~~ 96 (145)
|+.+-.+..=+.-+++....+.+..+++.+.++. +-+|.|.-.++. .+.+-.... ..+.+.+. ...+
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~~~l-----~~~~~~~~~~~~~s 152 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAVDAL-----KGYGDIFYRNTIAS 152 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccchhh-----hhHHHHHHHHHHHc
Confidence 5555555554678899999999999999998765 445555543332 222100000 01112222 1223
Q ss_pred CCccEEEeechhccHHhHHHHHhcCEEEEeCCc-EEec
Q 032207 97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGA-KFID 133 (145)
Q Consensus 97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a-~f~~ 133 (145)
-..|.|+++.|+|.||+......||++|+++++ .+.+
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~ 190 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI 190 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence 458999999999999998887899999999874 4443
No 131
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.64 E-value=0.031 Score=46.35 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=72.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR 98 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (145)
|..|--|..-...+++.+-.+...++++.+.+. .+-+|.|.-.++ |..|.+-+. ........+++..+....
T Consensus 317 V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~------~g~~~~~a~~~~a~~~~~ 388 (512)
T TIGR01117 317 VGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY------GGIIRHGAKVLYAYSEAT 388 (512)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH------HHHHHHHHHHHHHHHhCC
Confidence 443433333345679999999999999988754 456666665444 555533221 111223445677788899
Q ss_pred ccEEEeechhccHHhHHHHH----hcCEEEEeCCcEEec
Q 032207 99 KPIIGAISGFAVTAGFEIAL----ACDVLVAAKGAKFID 133 (145)
Q Consensus 99 kp~Ia~v~G~a~GgG~~l~l----~~D~~ia~~~a~f~~ 133 (145)
+|.|+.+-|.+.|||+.-.. .+|+++|.+++.++.
T Consensus 389 vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v 427 (512)
T TIGR01117 389 VPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV 427 (512)
T ss_pred CCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee
Confidence 99999999999888654443 289999999988865
No 132
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=96.59 E-value=0.019 Score=41.86 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEE--EEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVII--LSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.++.++.+++...|-.++.++..+-+. |-+.|+...+ ...++..|...+.|+...+.|.|
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~------------------g~aIyd~m~~~~~~V~Tv~~G~A 99 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVIS------------------GLAIYDTMQFVKPDVHTICLGLA 99 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhh------------------HHHHHHHHHhcCCCEEEEEEEeh
Confidence 378999999999999987554334333 3344432222 23466778889999999999999
Q ss_pred cHHhHHHHHhcC--EEEEeCCcEEeccce
Q 032207 110 VTAGFEIALACD--VLVAAKGAKFIDTHA 136 (145)
Q Consensus 110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~ 136 (145)
.+.|.-+++++| .|++.++++|.+-..
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp 128 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQP 128 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecC
Confidence 999999999999 699999998865443
No 133
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=96.48 E-value=0.0059 Score=42.51 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=32.7
Q ss_pred HhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecccee
Q 032207 94 MERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHAR 137 (145)
Q Consensus 94 l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~ 137 (145)
..+..||+||.+++.+..+++-++.+||-+++.+.+.++..-+.
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~ 45 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVS 45 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EE
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChh
Confidence 34678999999999999999999999999999998887664433
No 134
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.43 E-value=0.077 Score=44.58 Aligned_cols=107 Identities=16% Similarity=0.092 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHH---HHh
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVA---QME 95 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~---~l~ 95 (145)
|+.+--+..-+..+++....+.+..+++.+.+.. +-+|.|.-.++.+-.+ ..+.+ .....+.+++. ++.
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~------~~~~~~g~if~~~~~ls 202 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVF------PDRDHFGRIFYNQARMS 202 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-ccccc------chHhHHHHHHHHHHHHh
Confidence 5555555444678999999999999999988664 5566665444333211 00000 00011223333 355
Q ss_pred cCCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207 96 RCRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID 133 (145)
Q Consensus 96 ~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~ 133 (145)
....|.|+++-|+|.|||.-....||++|++++ +.+.+
T Consensus 203 ~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 203 SAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 567999999999999999999999999999875 54544
No 135
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.19 E-value=0.11 Score=38.84 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=65.6
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhh-ccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHH---
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSL-DKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVA--- 92 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~-~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~--- 92 (145)
+.-..|.=|+|. ..++.+--..+...+..+ +++..+-+|.|.-.++ |-.|..-+.. .......++++
T Consensus 31 G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~------G~~~a~A~l~~a~a 101 (238)
T TIGR03134 31 GGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELL------GINQALAHLAKALA 101 (238)
T ss_pred CEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHH------HHHHHHHHHHHHHH
Confidence 333333344443 268888888888888885 5456666666655432 2222211111 01122233333
Q ss_pred HHhcCCccEEEeechhccHHhHH-HHHhcCEEEEeCCcEEec
Q 032207 93 QMERCRKPIIGAISGFAVTAGFE-IALACDVLVAAKGAKFID 133 (145)
Q Consensus 93 ~l~~~~kp~Ia~v~G~a~GgG~~-l~l~~D~~ia~~~a~f~~ 133 (145)
.....+.|+|+.|-|.+.|||+- +.+.+|.++|-+++.++.
T Consensus 102 ~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v 143 (238)
T TIGR03134 102 LARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV 143 (238)
T ss_pred HhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe
Confidence 44466799999999999988754 555689999998887763
No 136
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=96.11 E-value=0.042 Score=39.71 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEEE--EcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVIIL--SGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.++..+.+++...|..++.++..+-|.+ -+.| +++. ....++..|...+.|+...+.|.|
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG------G~v~------------~g~~I~d~l~~~~~~v~t~~~G~A 95 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG------GSIT------------AGLAIYDTMQFIKPDVSTICIGQA 95 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CCHH------------HHHHHHHHHHhcCCCEEEEEEEee
Confidence 3677788888888888886554343433 3333 3322 223455667777777888888999
Q ss_pred cHHhHHHHHhcC--EEEEeCCcEEeccce
Q 032207 110 VTAGFEIALACD--VLVAAKGAKFIDTHA 136 (145)
Q Consensus 110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~ 136 (145)
.+.|.-+++++| .|++.++++|.+-+.
T Consensus 96 aSaaslI~~aG~~~~r~~~p~s~imiH~p 124 (191)
T TIGR00493 96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQP 124 (191)
T ss_pred ccHHHHHHhcCCCCcEEecCCceEEEecC
Confidence 999999998766 699999998876443
No 137
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.90 E-value=0.075 Score=40.42 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=78.3
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207 18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC 97 (145)
Q Consensus 18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (145)
.|+...++-.=-..++....=+.+..+++.+-++. +.+|+++..|+ +-..+-.-.. -...+....+.++...
T Consensus 123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSGG-----ARMQEg~lSL--MQMaktsaAl~~l~ea 194 (294)
T COG0777 123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASGG-----ARMQEGILSL--MQMAKTSAALKRLSEA 194 (294)
T ss_pred EEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCcc-----hhHhHHHHHH--HHHHHHHHHHHHHHhc
Confidence 36666776655567888888899999999988665 68888887653 2232210000 0011223456678888
Q ss_pred CccEEEeechhccHH-hHHHHHhcCEEEEeCCcEEeccc
Q 032207 98 RKPIIGAISGFAVTA-GFEIALACDVLVAAKGAKFIDTH 135 (145)
Q Consensus 98 ~kp~Ia~v~G~a~Gg-G~~l~l~~D~~ia~~~a~f~~pe 135 (145)
..|.|+.+..+..|| -..+++..|+.||.+.|.+++.-
T Consensus 195 ~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAG 233 (294)
T COG0777 195 GLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAG 233 (294)
T ss_pred CCceEEEecCCCccchhHhHHhccCeeecCcccccccCc
Confidence 999999999999988 46799999999999888887643
No 138
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=95.89 E-value=0.067 Score=39.62 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.+|....+++...|..++..+.-+ .+.|-+.|+...+| ..++..|...+.|+...+.|.|
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG------------------laIyd~m~~~~~~V~tv~~G~A 123 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG------------------LGIYDTMQFISSDVATICTGMA 123 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH------------------HHHHHHHHhcCCCEEEEEEEEe
Confidence 467777778887766665432112 23334444332222 3456788888999999999999
Q ss_pred cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207 110 VTAGFEIALACDV--LVAAKGAKFIDTH 135 (145)
Q Consensus 110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe 135 (145)
.+.|.-|++++|. |++.+++++.+-.
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHq 151 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQ 151 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEecc
Confidence 9999999999996 9999998886433
No 139
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=95.84 E-value=0.07 Score=38.81 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEE--EEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVI--ILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~v--vl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.++.+...++...|..++.++..+-+ .|-+.|+...+| ..++..|...+.|+...+.|.|
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g------------------~aIyd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG------------------LGIFDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhH------------------HHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999988854433333 333444322222 3456778888899999999999
Q ss_pred cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207 110 VTAGFEIALACDV--LVAAKGAKFIDTH 135 (145)
Q Consensus 110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe 135 (145)
.+.|.-+++++|- |++.+++++..-.
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHq 122 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQ 122 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEec
Confidence 9999999999985 8899998886533
No 140
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=95.17 E-value=0.16 Score=37.03 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.++.++-+.+...|-.++..+.-+ -+.|-+.|+...+| ..++..|...+-|+...+.|.|
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~G------------------laIyd~m~~~~~~V~Ti~~G~A 96 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAG------------------LAIYDTMRYIKAPVSTICVGIA 96 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhH------------------HHHHHHHHhcCCCEEEEEEeee
Confidence 478888888888888887543222 33334444322222 4467788889999999999999
Q ss_pred cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207 110 VTAGFEIALACDV--LVAAKGAKFIDTH 135 (145)
Q Consensus 110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe 135 (145)
.+.+.-+++++|- |++.+++++-+-.
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHq 124 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQ 124 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEec
Confidence 9999999999995 8999999886533
No 141
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.15 E-value=0.12 Score=42.79 Aligned_cols=95 Identities=9% Similarity=0.040 Sum_probs=62.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEe
Q 032207 25 NRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGA 104 (145)
Q Consensus 25 ~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~ 104 (145)
+..-+.-++.+-..+.+..+.+.+.++....+.+..+.| +.+.+-..... . .-....-..+++.. +|.|++
T Consensus 99 D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG------ari~~~v~~l~-g-~g~iF~~~a~~Sg~-IPqIsv 169 (526)
T COG4799 99 DFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG------ARIQEGVPSLA-G-YGRIFYRNARASGV-IPQISV 169 (526)
T ss_pred cCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc------cccccCccccc-c-chHHHHHHHHhccC-CCEEEE
Confidence 344477888888888888888888876554444444443 33322100000 0 01111112244445 999999
Q ss_pred echhccHHhHHHHHhcCEEEEeCC
Q 032207 105 ISGFAVTAGFEIALACDVLVAAKG 128 (145)
Q Consensus 105 v~G~a~GgG~~l~l~~D~~ia~~~ 128 (145)
|-|+|.|||.-+...||++|+.++
T Consensus 170 v~G~c~gGgaY~pal~D~~imv~~ 193 (526)
T COG4799 170 VMGPCAGGGAYSPALTDFVIMVRD 193 (526)
T ss_pred EEecCcccccccccccceEEEEcC
Confidence 999999999999999999999988
No 142
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.33 E-value=0.36 Score=35.18 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEE--EEeCCcEEe
Q 032207 88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL--VAAKGAKFI 132 (145)
Q Consensus 88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~--ia~~~a~f~ 132 (145)
...+..|...+.|+...+-|.|...|.-|++++|.. ++.+++++-
T Consensus 75 ~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrim 121 (200)
T COG0740 75 LAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIM 121 (200)
T ss_pred HHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEE
Confidence 345778889999999999999999999999999985 888887764
No 143
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.66 E-value=0.37 Score=39.81 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred CcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207 17 MGIAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME 95 (145)
Q Consensus 17 ~~v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~ 95 (145)
|.-.-|.=|+|. ..-+++.+-.+...+.++.+++ ..+-+|.|.-. +.|..|..-+ .........+++..+.
T Consensus 293 G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E------~~g~~~~ga~~~~a~~ 364 (493)
T PF01039_consen 293 GRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAE------RAGIIRAGARLLYALA 364 (493)
T ss_dssp TEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHH------HTTHHHHHHHHHHHHH
T ss_pred CcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhh------hcchHHHHHHHHHHHH
Confidence 443334444443 2236999999999999999986 45677777654 3344442221 1222344567888999
Q ss_pred cCCccEEEeechhccHHhHHHHHhc----CEEEEeCCcEEec
Q 032207 96 RCRKPIIGAISGFAVTAGFEIALAC----DVLVAAKGAKFID 133 (145)
Q Consensus 96 ~~~kp~Ia~v~G~a~GgG~~l~l~~----D~~ia~~~a~f~~ 133 (145)
.++.|.|..+-|.+.|+|..-.... |+++|.++++++.
T Consensus 365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v 406 (493)
T PF01039_consen 365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV 406 (493)
T ss_dssp HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence 9999999999999999887555555 8999999998875
No 144
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=92.62 E-value=0.34 Score=37.14 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=38.3
Q ss_pred HHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207 42 AQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG 113 (145)
Q Consensus 42 ~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG 113 (145)
.++|+.+++||+.++||+-|+-+ ....+...+++.+ ...+||+|+.+-|.+.=-|
T Consensus 189 id~L~~fe~Dp~T~~ivmiGEiG----------------G~aEe~AA~~i~~-~~~~KPVVa~iaG~tap~g 243 (293)
T COG0074 189 IDALEMFEADPETEAIVMIGEIG----------------GPAEEEAAEYIKA-NATRKPVVAYIAGRTAPEG 243 (293)
T ss_pred HHHHHHHhcCccccEEEEEecCC----------------CcHHHHHHHHHHH-hccCCCEEEEEeccCCCcc
Confidence 47788889999999999998621 1112334555666 4456999999999876333
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=91.55 E-value=1.5 Score=37.01 Aligned_cols=95 Identities=15% Similarity=0.095 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
-.++.+-.+...+.++.+.+ -.+-+|-|.-.++ |..|.+-+. ........+++..+.....|.|+++-|.+.
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~------~G~~~~~a~l~~A~a~~~VP~isvi~g~a~ 451 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA------SGIAKAGAKMVMAVACAKVPKITIIVGGSF 451 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH------hhHHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence 45778888888888888875 4566666655433 555544332 122344567788888999999999999999
Q ss_pred HHhHHHHH----hcCEEEEeCCcEEec
Q 032207 111 TAGFEIAL----ACDVLVAAKGAKFID 133 (145)
Q Consensus 111 GgG~~l~l----~~D~~ia~~~a~f~~ 133 (145)
|+|.--.. ..|++++.++++++.
T Consensus 452 G~g~~aM~g~~~~~d~~~awp~A~i~v 478 (569)
T PLN02820 452 GAGNYGMCGRAYSPNFLFMWPNARIGV 478 (569)
T ss_pred hHHHHHhcCcCCCCCEEEECCCCeEEe
Confidence 98765443 679999998888864
No 146
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=91.46 E-value=2.2 Score=31.71 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
..+.++-+.+...|-.++.++..+ -+-|-+.|+...+|-=+.. ......++..|...+-++...+.|.|
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~---------v~~glaIyD~m~~ik~~V~Tv~~G~A 118 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF---------ETEAFAICDTMRYIKPPVHTICIGQA 118 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc---------cccHHHHHHHHHhcCCCeEEEEEeeh
Confidence 345558888888888886544323 3444565655545411100 11234567778888889999999999
Q ss_pred cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207 110 VTAGFEIALACDV--LVAAKGAKFIDTH 135 (145)
Q Consensus 110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe 135 (145)
.+.+.-|++++|- |++-+++++-+-.
T Consensus 119 aS~AslIl~aG~kg~R~alpns~iMIHq 146 (222)
T PRK12552 119 MGTAAMILSAGTKGQRASLPHATIVLHQ 146 (222)
T ss_pred hhHHHHHHhCCCCCceecCCCcEEEecc
Confidence 9999999999995 8998998886433
No 147
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=91.33 E-value=0.72 Score=31.61 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=30.7
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF 108 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~ 108 (145)
.+.+.++.+.+||++|+|++.-++- ...+.+.+..++.... ||+|+..-|.
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~-----------------~d~~~f~~~~~~a~~~-KPVv~lk~Gr 91 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGI-----------------GDGRRFLEAARRAARR-KPVVVLKAGR 91 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-------------------S-HHHHHHHHHHHCCC-S-EEEEE---
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCC-----------------CCHHHHHHHHHHHhcC-CCEEEEeCCC
Confidence 5778888999999999999987641 0123455566676666 9999999997
No 148
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=88.93 E-value=0.84 Score=35.20 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhccCCCeeEEEEEc-CCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207 35 RSMMADMAQAFKSLDKDESVLVIILSG-SGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG 113 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG 113 (145)
++-++.=...++.+++=. .-+|-|-- .|-+-..|+ ++ ....+...+-+..|.+++.|+|+.|=|---+||
T Consensus 133 PeGyRKAlRlm~~AekF~-lPiitfIDT~GAypG~~A--EE------rGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGG 203 (317)
T COG0825 133 PEGYRKALRLMKLAEKFG-LPIITFIDTPGAYPGIGA--EE------RGQSEAIARNLREMARLKVPIISIVIGEGGSGG 203 (317)
T ss_pred chHHHHHHHHHHHHHHhC-CCEEEEecCCCCCCCcch--hh------cccHHHHHHHHHHHhCCCCCEEEEEecCCCchh
Confidence 777777777777776432 23333333 333222221 11 111234455677889999999999999866666
Q ss_pred HHHHHhcCEEEEeCCcEEeccceeeeecCCCC
Q 032207 114 FEIALACDVLVAAKGAKFIDTHARLVCKISCS 145 (145)
Q Consensus 114 ~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~s 145 (145)
.-=..-+|.+.+-+++.++. --|+||+
T Consensus 204 ALAi~vad~V~mle~s~ySV-----isPEG~A 230 (317)
T COG0825 204 ALAIGVADRVLMLENSTYSV-----ISPEGCA 230 (317)
T ss_pred hHHhhHHHHHHHHHhceeee-----cChhhhh
Confidence 54444569999999988864 3567774
No 149
>PLN02522 ATP citrate (pro-S)-lyase
Probab=87.33 E-value=1.4 Score=37.51 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=35.8
Q ss_pred HHHHHHHhhccCCCeeEEEEEcC-CCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 40 DMAQAFKSLDKDESVLVIILSGS-GRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
.+.+.|+.+++||++++|++.++ |. ...+.+.+..++.. ..||+|+..-|.+.
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg-----------------~~e~~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGG-----------------RDEYSLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCc-----------------hhHHHHHHHHHHhc-CCCCEEEEeccCCC
Confidence 35677777888888888888876 42 01222333344433 78999999999976
No 150
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=87.15 E-value=1.7 Score=33.95 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=33.4
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
.+.+.|+.+++||+.++|++.++... +- .+...+++.. ....||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~~-----------e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGG-----TA-----------EEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCC-----ch-----------hHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 35567777777888888888876310 00 1111223322 3468999999999874
No 151
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=84.39 E-value=3.2 Score=32.16 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhccCC---CeeEEEE-EcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 35 RSMMADMAQAFKSLDKDE---SVLVIIL-SGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~---~v~~vvl-~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
.....++.++++.+...+ .+.+||| +|+|. ++++.. -.-..+.+.+..+|.|+|++| ||-.
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-------~eDL~~-------FN~e~varai~~~~~PvisaI-GHe~ 118 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-------IEDLWA-------FNDEEVARAIAASPIPVISAI-GHET 118 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCCC-------hHHhcc-------cChHHHHHHHHhCCCCEEEec-CCCC
Confidence 345677888888887554 4666655 45432 222111 112457889999999999998 6643
Q ss_pred HHhHHHHHhcCEEEEeCC
Q 032207 111 TAGFEIALACDVLVAAKG 128 (145)
Q Consensus 111 GgG~~l~l~~D~~ia~~~ 128 (145)
=- .-.=+.+|+|..|+.
T Consensus 119 D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 119 DF-TIADFVADLRAPTPT 135 (319)
T ss_pred Cc-hHHHHHHHhhCCCHH
Confidence 33 223356777777765
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=82.50 E-value=3 Score=33.94 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207 34 TRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG 113 (145)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG 113 (145)
......++.++++.+...+++.+|||.=+|+. ++++... .-..+.+.+..+|.|+|++| ||-.=--
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs------~eDL~~F-------n~e~~~rai~~~~~Pvis~i-GHe~D~t 233 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGS------LEDLWSF-------NDEKVARAIFLSKIPIISAV-GHETDFT 233 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCC------HHHhhhc-------CcHHHHHHHHcCCCCEEEec-CcCCCcc
Confidence 34556788888888876555666666433221 2222111 11457789999999999998 5533221
Q ss_pred HHHHHhcCEEEEeCC
Q 032207 114 FEIALACDVLVAAKG 128 (145)
Q Consensus 114 ~~l~l~~D~~ia~~~ 128 (145)
+ .=+.+|.|..|+.
T Consensus 234 i-~D~vAd~ra~TPt 247 (432)
T TIGR00237 234 I-SDFVADLRAPTPS 247 (432)
T ss_pred H-HHHhhhccCCCcH
Confidence 1 2356788888876
No 153
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=78.24 E-value=2.1 Score=34.96 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=41.5
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHH
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIAL 118 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l 118 (145)
-.+.+.++.+.+|+++++|++..++- . ..+.+.+..++... .||+|+..-|..- .|...+.
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~~--------~---------~~~~f~~aa~~a~~-~KPVv~~k~Grs~-~g~~aa~ 249 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEGI--------K---------DGRKFLKTAREISK-KKPIVVLKSGTSE-AGAKAAS 249 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecCC--------C---------CHHHHHHHHHHHcC-CCCEEEEecCCCh-hhhhhhh
Confidence 36678888888889999998887641 0 01234445555555 8999999999864 4444444
Q ss_pred h
Q 032207 119 A 119 (145)
Q Consensus 119 ~ 119 (145)
+
T Consensus 250 s 250 (447)
T TIGR02717 250 S 250 (447)
T ss_pred h
Confidence 3
No 154
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=77.86 E-value=6.3 Score=30.36 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=33.1
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhc-CCccEEEeechhcc
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMER-CRKPIIGAISGFAV 110 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~-~~kp~Ia~v~G~a~ 110 (145)
++.+.|+.+.+||++|+|++..++- | + ...+....+.. ..||+|+..-|..-
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~~----~-~--------------~~~~~~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEIG----G-S--------------AEEEAADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC----C-c--------------hHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 5667777888888888888887631 0 0 00011222332 68999999988864
No 155
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=76.86 E-value=7.9 Score=27.01 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh-----cCCccEEEeechhccH
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME-----RCRKPIIGAISGFAVT 111 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~-----~~~kp~Ia~v~G~a~G 111 (145)
...++|..+.+||++++|++-+.+++=+. .+....+...+. ..++|+|+.+.|...-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~---------------~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC---------------EDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH---------------HHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch---------------HHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 45667777888999999999875432111 122233333333 4679999999998766
No 156
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=76.67 E-value=6.7 Score=30.33 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=32.2
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhc-CCccEEEeechhcc
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMER-CRKPIIGAISGFAV 110 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~-~~kp~Ia~v~G~a~ 110 (145)
++.+.|+.+.+||++++|++..++-. +...+..+.+.. ..||+|+.--|..-
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE~~~-------------------~~~~~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGEIGG-------------------SAEEEAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCC-------------------cHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 46677777777888888888765310 000011222222 48999999999876
No 157
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=75.99 E-value=18 Score=30.35 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=71.7
Q ss_pred EEEEEEcCC-CCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207 19 IAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC 97 (145)
Q Consensus 19 v~~i~l~~~-~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (145)
|.+|- |+| ...-+|+.+-.+.-.+.++.... .++-.|.|.-. +.|.-|-+-+. ......-.+++.++...
T Consensus 326 VGiIA-Nqp~~~~G~l~~~sa~KaArFI~~cd~-~~iPlv~L~d~-pGFm~G~~~E~------~giik~Gakl~~A~aea 396 (526)
T COG4799 326 VGIIA-NQPRHLGGVLDIDSADKAARFIRLCDA-FNIPLVFLVDT-PGFMPGTDQEY------GGIIKHGAKLLYAVAEA 396 (526)
T ss_pred EEEEe-cCccccccccchHHHHHHHHHHHhhhc-cCCCeEEEeCC-CCCCCChhHHh------ChHHHhhhHHHhhHhhc
Confidence 44443 444 35678999998888888865553 34556655443 55888866443 22233446788899999
Q ss_pred CccEEEeechhccHHhHHH----HHhcCEEEEeCCcEEe
Q 032207 98 RKPIIGAISGFAVTAGFEI----ALACDVLVAAKGAKFI 132 (145)
Q Consensus 98 ~kp~Ia~v~G~a~GgG~~l----~l~~D~~ia~~~a~f~ 132 (145)
.+|.|..+-|.+.|+|.-- ++..|+.+|.++++++
T Consensus 397 tVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia 435 (526)
T COG4799 397 TVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA 435 (526)
T ss_pred cCCeEEEEecccccceeeeecCccCCCceeEecCcceee
Confidence 9999999999999998542 3457777777776664
No 158
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=75.13 E-value=17 Score=30.02 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=71.2
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207 19 IAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC 97 (145)
Q Consensus 19 v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (145)
|+.+- |+|+ ..-.|..+.-..-.+.++...+ ..+-.|.+...++ |-.|.+.+... ....-..+.......
T Consensus 351 VgIvg-nn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~G-fm~g~~~e~~g------IaK~gAklv~a~a~a 421 (536)
T KOG0540|consen 351 VGIVG-NNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNITG-FMVGRAAEAGG------IAKHGAKLVYAVACA 421 (536)
T ss_pred EEEec-cCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccCC-ccccchhhhhc------hhhhhhhhhhhhhhc
Confidence 44333 4443 3456676666677777776664 3467777776555 88887765421 122234566677778
Q ss_pred CccEEEeechhccHHhHH---HHHhcCEEEEeCCcEEec
Q 032207 98 RKPIIGAISGFAVTAGFE---IALACDVLVAAKGAKFID 133 (145)
Q Consensus 98 ~kp~Ia~v~G~a~GgG~~---l~l~~D~~ia~~~a~f~~ 133 (145)
+.|-|..+.|.+.||-.. ..+.-|+.++.++++++.
T Consensus 422 kvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Iav 460 (536)
T KOG0540|consen 422 KVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAV 460 (536)
T ss_pred cCceEEEEecCccCCcccccccccCCceeEEcccceeee
Confidence 889999999999997655 556789999998888764
No 159
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=74.06 E-value=8.5 Score=29.90 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=30.1
Q ss_pred HHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 41 MAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 41 l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
+.+.|+.+.+||++++|++..++. |.+++ ...+++.... ..||+|+..-|..-
T Consensus 193 ~~d~L~yl~~Dp~T~~I~ly~E~~----G~~~~------------d~~~f~~aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 193 FVDCLEKFVKDPQTEGIILIGEIG----GTAEE------------DAAAFIKESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred HHHHHHHHhhCCCCcEEEEEeccC----CchHH------------HHHHHHHHhc-CCCCEEEEEecCCC
Confidence 446666666677777777766531 11111 1122333322 38999999999874
No 160
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=72.17 E-value=8 Score=31.39 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhccCCCeeEEEE-EcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207 35 RSMMADMAQAFKSLDKDESVLVIIL-SGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG 113 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~v~~vvl-~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG 113 (145)
.....++.++++.+.... +.+||| +|+|. ++++... .-..+.+.+..+|.|+|++| ||-.=--
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii~RGGGS-------~eDL~~F-------n~e~v~~ai~~~~~Pvis~I-GHE~D~t 238 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIVARGGGS-------LEDLWAF-------NDEAVARAIAASRIPVISAV-GHETDFT 238 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEEecCCCC-------HHHhhcc-------CcHHHHHHHHcCCCCEEEec-cCCCCcc
Confidence 345678888888877543 455544 55431 2222111 11457889999999999998 5532211
Q ss_pred HHHHHhcCEEEEeCC
Q 032207 114 FEIALACDVLVAAKG 128 (145)
Q Consensus 114 ~~l~l~~D~~ia~~~ 128 (145)
-.=+.+|.|.+|+.
T Consensus 239 -l~D~vAd~ra~TPt 252 (438)
T PRK00286 239 -IADFVADLRAPTPT 252 (438)
T ss_pred -HHHHhhhccCCChH
Confidence 12356788888876
No 161
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=72.05 E-value=10 Score=30.16 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=56.2
Q ss_pred HHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHH----HHHHHHHhcCCccEEEeechhccHHhHHHH-
Q 032207 43 QAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVE----TDTVAQMERCRKPIIGAISGFAVTAGFEIA- 117 (145)
Q Consensus 43 ~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~----~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~- 117 (145)
+.++.+..+|++.+..++++.. +|-.+.+..........-.+ .+.. ....+...+.|.-+|.+.-.--++.
T Consensus 17 EL~rlL~~Hp~ve~~~~ss~~~---~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalPhg~s~~~v~~l~~ 92 (349)
T COG0002 17 ELLRLLAGHPDVELILISSRER---AGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALPHGVSAELVPELLE 92 (349)
T ss_pred HHHHHHhcCCCeEEEEeechhh---cCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecCchhHHHHHHHHHh
Confidence 4566777899999777766532 56555554433332110000 0111 3445788888888888876666555
Q ss_pred -------HhcCEEEE----------e--------CCcEEecccee
Q 032207 118 -------LACDVLVA----------A--------KGAKFIDTHAR 137 (145)
Q Consensus 118 -------l~~D~~ia----------~--------~~a~f~~pe~~ 137 (145)
+++|||+. . +++.+++||..
T Consensus 93 ~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~ 137 (349)
T COG0002 93 AGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELH 137 (349)
T ss_pred CCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccC
Confidence 68899997 1 47788888865
No 162
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=72.03 E-value=45 Score=25.99 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHH-HhhccCCCeeEEEEEcCC-CcccccCCc-hhh-------hhhccc--------CcccHHHHH
Q 032207 29 SLNSLTRSMMADMAQAF-KSLDKDESVLVIILSGSG-RAFCSGVDL-TSA-------EDVFKG--------DVKDVETDT 90 (145)
Q Consensus 29 ~~N~l~~~~~~~l~~~l-~~~~~~~~v~~vvl~g~g-~~F~~G~dl-~~~-------~~~~~~--------~~~~~~~~~ 90 (145)
..|.++++-+.+-...+ .++...+.-++.|+-|.. +.|--+-+. ..+ ...... .......+.
T Consensus 121 a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~ 200 (311)
T PF06258_consen 121 APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAA 200 (311)
T ss_pred CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHH
Confidence 36899999888866665 445556666777777754 666655431 111 111110 111122222
Q ss_pred HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccce
Q 032207 91 VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHA 136 (145)
Q Consensus 91 ~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~ 136 (145)
++.... +.+-+...++.--+-=.++...||.+++|+|+.=-+.|+
T Consensus 201 L~~~~~-~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA 245 (311)
T PF06258_consen 201 LRELLK-DNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEA 245 (311)
T ss_pred HHHhhc-CCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHH
Confidence 332221 234443447776777788999999999998865444443
No 163
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=71.12 E-value=40 Score=26.11 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchh-hhh----hcc---cC----cccHH
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTS-AED----VFK---GD----VKDVE 87 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~-~~~----~~~---~~----~~~~~ 87 (145)
++.|+.. .|-++...+....+++...--.+.-++-||-|.. +.|.---|-.. +.. ... .. ..++-
T Consensus 131 ilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRT 208 (329)
T COG3660 131 ILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRT 208 (329)
T ss_pred eeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 4566655 4778999999999999988656666777777765 87776555322 111 111 00 01111
Q ss_pred HHHHHH-Hhc-CCccEEEeechh--ccHHhHHHHHhcCEEEEeCCcEEeccc
Q 032207 88 TDTVAQ-MER-CRKPIIGAISGF--AVTAGFEIALACDVLVAAKGAKFIDTH 135 (145)
Q Consensus 88 ~~~~~~-l~~-~~kp~Ia~v~G~--a~GgG~~l~l~~D~~ia~~~a~f~~pe 135 (145)
.+..+. |.+ ++--.+...++. -.---..+..++|+.|++.|+.=-..|
T Consensus 209 p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sE 260 (329)
T COG3660 209 PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSE 260 (329)
T ss_pred cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHH
Confidence 122222 222 555567777877 334567888999999999886543333
No 164
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=70.26 E-value=9.4 Score=31.27 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHH
Q 032207 36 SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115 (145)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~ 115 (145)
..-.++.++++.+.+..++.++++-=+| +-++++... .-..+.+.++.+++|+|++| ||-.=.-+
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRGG------GSiEDLW~F-------NdE~vaRAi~~s~iPvISAV-GHEtD~tL- 240 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARGG------GSIEDLWAF-------NDEIVARAIAASRIPVISAV-GHETDFTL- 240 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecCc------chHHHHhcc-------ChHHHHHHHHhCCCCeEeec-ccCCCccH-
Confidence 3455677777777766666666553221 122322211 11356789999999999998 55322111
Q ss_pred HHHhcCEEEEeCC
Q 032207 116 IALACDVLVAAKG 128 (145)
Q Consensus 116 l~l~~D~~ia~~~ 128 (145)
.=+.+|+|-+|+.
T Consensus 241 ~DfVAD~RApTPT 253 (440)
T COG1570 241 ADFVADLRAPTPT 253 (440)
T ss_pred HHhhhhccCCCch
Confidence 1235677777765
No 165
>PRK06091 membrane protein FdrA; Validated
Probab=67.61 E-value=16 Score=30.89 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=34.1
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
.+.+.++.+.+||++++|++.+..+. +. .. .+++...++..||+|+..-|..-
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kppa-------E~--------v~---~~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPPA-------EA--------VR---LKIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCc-------hH--------HH---HHHHHHHhhCCCCEEEEEecCCc
Confidence 45666777777788888887775421 11 01 24445555569999999999754
No 166
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=66.49 E-value=45 Score=25.99 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=47.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR 98 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (145)
|-.+++......| .+.+.++.+...++.+.. ....++||||+.-.--.--|. .+.+.+.+++.-+....
T Consensus 67 v~~~~~~~h~~~~-~~~~hl~~~y~~~~~i~~-~~~DG~IITGAp~e~~~fedv---------~YW~El~~i~~w~~~~~ 135 (302)
T PRK05368 67 IHLLRIDSHESKN-TPAEHLENFYCTFEDIKD-EKFDGLIITGAPVEQLPFEDV---------DYWDELKEILDWAKTHV 135 (302)
T ss_pred EEEEecCCcCCCC-CCHHHHHHhccCHHHhcc-CCCCEEEEcCCCCCCccCCCC---------chHHHHHHHHHHHHHcC
Confidence 3344554444334 478889999999999874 568999999986221111111 11333455555555667
Q ss_pred ccEEEeechh
Q 032207 99 KPIIGAISGF 108 (145)
Q Consensus 99 kp~Ia~v~G~ 108 (145)
+|++..+=|+
T Consensus 136 ~s~LgICwGa 145 (302)
T PRK05368 136 TSTLFICWAA 145 (302)
T ss_pred CCEEEEcHHH
Confidence 7777555444
No 167
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=64.21 E-value=12 Score=30.25 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=56.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCC-CcccccCCchhhhhhcccCc--ccHH--HHHH
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS--GSG-RAFCSGVDLTSAEDVFKGDV--KDVE--TDTV 91 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g-~~F~~G~dl~~~~~~~~~~~--~~~~--~~~~ 91 (145)
|+.|++ +.|+.....+|..++++++++. ++.+||- +.+ +..+...++..+.-....-. ..+. ....
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 888887 4577778888999999999877 8888874 543 66666665544321110000 0000 0000
Q ss_pred H---HHhcCCccEEEeechhccHHhHHHHH
Q 032207 92 A---QMERCRKPIIGAISGFAVTAGFEIAL 118 (145)
Q Consensus 92 ~---~l~~~~kp~Ia~v~G~a~GgG~~l~l 118 (145)
. .-...++|+|..+|+....++=-++.
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAsEI~ag 307 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASASEIFAG 307 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHHHHHHH
Confidence 0 11145899999999998777643433
No 168
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=62.12 E-value=28 Score=22.28 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=37.5
Q ss_pred EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCC--------eeEEEEEcCC
Q 032207 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDES--------VLVIILSGSG 63 (145)
Q Consensus 10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~--------v~~vvl~g~g 63 (145)
+.++.. +++.+++++.| ++..-.+++.+.+.++..... ++.|||--.+
T Consensus 2 ~~~~~~-~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETH-DGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEE-TTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEE-CCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 355666 88999999776 788888888888888876654 7889887665
No 169
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=61.57 E-value=23 Score=26.34 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCc
Q 032207 26 RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65 (145)
Q Consensus 26 ~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~ 65 (145)
.++....++.+.++++.+.+.++. ..++|+++|.|..
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~~ 49 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGSF 49 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCcc
Confidence 333456799999999999999886 5688989987643
No 170
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=58.22 E-value=45 Score=25.09 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcc
Q 032207 29 SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66 (145)
Q Consensus 29 ~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F 66 (145)
..+.+|.+.++.+.+.+.++.+. .+++-|+.|.|..|
T Consensus 21 ~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 21 QGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 34779999999999999999965 67888888877544
No 171
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=58.16 E-value=33 Score=21.47 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=32.2
Q ss_pred cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
.+.++.. +++.++++..+ ++......+.+.+..+..++..+.|++--.+
T Consensus 4 ~i~~~~~-~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQ-EGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEE-CCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 3566666 78999999753 4555566666666665544566778876554
No 172
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=57.98 E-value=90 Score=24.48 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
...|-...| .++.+-+++|.+.++.+-++.+ .||+.|.
T Consensus 101 ~Tein~~Gp----~is~~~~~~~l~~~~~~l~~~d--~VvlsGS 138 (310)
T COG1105 101 ETEINFPGP----EISEAELEQFLEQLKALLESDD--IVVLSGS 138 (310)
T ss_pred EEEecCCCC----CCCHHHHHHHHHHHHHhcccCC--EEEEeCC
Confidence 554444444 4899999999999999554544 4888885
No 173
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=55.00 E-value=51 Score=26.27 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.-++++.+.+|.+.+.+.-.++++..|||+.
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItH 108 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITH 108 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeC
Confidence 5588999999999999998787777777765
No 174
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=54.69 E-value=51 Score=25.76 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
--++++.+.+|.+.+++..+++++..+|++.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 4478999999999998865566666666664
No 175
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=54.00 E-value=46 Score=27.22 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=30.3
Q ss_pred EEEEEcCCCC-CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchh
Q 032207 20 AYVTINRPKS-LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS 74 (145)
Q Consensus 20 ~~i~l~~~~~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~ 74 (145)
++..|..+.. .+.+|..-.+++..-+-.-....++-++|+....+-|++|.++..
T Consensus 76 ~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~g 131 (428)
T COG5256 76 AHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGG 131 (428)
T ss_pred EEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCC
Confidence 3444444331 344443333333332222222345888999999999999987654
No 176
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=53.56 E-value=1.1e+02 Score=24.38 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
..-++++.+.+|.+.+++.-.++++..+|++.
T Consensus 82 S~~mt~~dw~~la~~I~~~~~~~~~~GiVVtH 113 (349)
T TIGR00520 82 SQDMNEEVLLKLAKGINELLASDDYDGIVITH 113 (349)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 34578888889999888876666667666664
No 177
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=51.59 E-value=44 Score=20.93 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHH-hcCCccEEEeechhc
Q 032207 38 MADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQM-ERCRKPIIGAISGFA 109 (145)
Q Consensus 38 ~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l-~~~~kp~Ia~v~G~a 109 (145)
-+++.+++.++.+++++.+|+++-. ..+...+.++.+ .....|+|..+-+.-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e~--------------------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITED--------------------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEHH--------------------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHHhcCCCccEEEeeHH--------------------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 4577888888888889999988752 122334444444 567889999987654
No 178
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=51.06 E-value=42 Score=25.58 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=42.1
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH--H
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ--M 94 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~--l 94 (145)
++-+.|-+-..+ .|-- .+.++|+.+-.|++.+.+|+-|+-+ . ..++...+++.. =
T Consensus 202 GQslcvGiGGDp-FnGT------~FID~L~vFl~D~~t~GIiliGEIG-----G-----------~AEe~AA~flk~~nS 258 (329)
T KOG1255|consen 202 GQSLCVGIGGDP-FNGT------NFIDCLEVFLEDPETEGIILIGEIG-----G-----------SAEEEAAEFLKEYNS 258 (329)
T ss_pred cceeEEeecCCC-CCCc------cHHHHHHHHhcCcccceEEEEeccC-----C-----------hhhHHHHHHHHHhcc
Confidence 344555554443 5543 3556677777799999999998621 0 011122233322 2
Q ss_pred hcCCccEEEeechhccH
Q 032207 95 ERCRKPIIGAISGFAVT 111 (145)
Q Consensus 95 ~~~~kp~Ia~v~G~a~G 111 (145)
..-+||+|+.+-|...-
T Consensus 259 g~~~kPVvsFIAG~tAp 275 (329)
T KOG1255|consen 259 GSTAKPVVSFIAGVTAP 275 (329)
T ss_pred CCCCCceeEEeecccCC
Confidence 34689999999887543
No 179
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=49.26 E-value=35 Score=22.85 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHhh--ccCCCeeEEEEEcCC
Q 032207 19 IAYVTINRPKSLNSL--T----------RSMMADMAQAFKSL--DKDESVLVIILSGSG 63 (145)
Q Consensus 19 v~~i~l~~~~~~N~l--~----------~~~~~~l~~~l~~~--~~~~~v~~vvl~g~g 63 (145)
+..|+.+-|.|+..= + ..+++++.+.+.+. .+.++++.|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 355666667766531 1 36677777777777 667889999999975
No 180
>smart00463 SMR Small MutS-related domain.
Probab=48.68 E-value=42 Score=20.12 Aligned_cols=31 Identities=10% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhccCCC-eeEEEEEcCCCc
Q 032207 35 RSMMADMAQAFKSLDKDES-VLVIILSGSGRA 65 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~-v~~vvl~g~g~~ 65 (145)
.+.+..|.+.++++..... -.+.||+|.|..
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCC
Confidence 5778888888888887665 478899998854
No 181
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=47.06 E-value=38 Score=25.45 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCCC-eeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeech
Q 032207 30 LNSLTRSMMADMAQAFKSLD-KDES-VLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISG 107 (145)
Q Consensus 30 ~N~l~~~~~~~l~~~l~~~~-~~~~-v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G 107 (145)
...+..+.-..|.+.+.+.- +.+. .-++++-..+..++-- +|+... ......+.+.+..-+...-|+|+.+-|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grr---eEllGi--~~alAhla~a~a~AR~~GHpvI~Lv~G 114 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRR---EELLGI--NQALAHLAKAYALARLAGHPVIGLVYG 114 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchH---HHHhhH--HHHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 57788887777776666544 3332 1233333333333321 111000 000111223344556678899999999
Q ss_pred hccHHhHH-HHHhcCEEEEeCCcEE
Q 032207 108 FAVTAGFE-IALACDVLVAAKGAKF 131 (145)
Q Consensus 108 ~a~GgG~~-l~l~~D~~ia~~~a~f 131 (145)
.+++|||- ..+.+|-.||=+++..
T Consensus 115 ~A~SGaFLA~GlqA~rl~AL~ga~i 139 (234)
T PF06833_consen 115 KAMSGAFLAHGLQANRLIALPGAMI 139 (234)
T ss_pred ccccHHHHHHHHHhcchhcCCCCee
Confidence 99999864 7888898888765543
No 182
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=45.22 E-value=75 Score=19.82 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=32.8
Q ss_pred EEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcc
Q 032207 11 LVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66 (145)
Q Consensus 11 ~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F 66 (145)
.++.. +++.++.+..+ ++..-.+++.+.+..+-..+..+.+++.-.+=.|
T Consensus 2 ~~~~~-~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~ 51 (106)
T TIGR02886 2 EFEVK-GDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTF 51 (106)
T ss_pred eEEEE-CCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcE
Confidence 34665 78999999665 5556666677776665433457888887665333
No 183
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=45.01 E-value=38 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 35 RSMMADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
.....++.++|+.+.+++...+.|+||..
T Consensus 18 ~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 18 AVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp ----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred cCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 35567788888888888888899999863
No 184
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.81 E-value=97 Score=21.31 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC--CcccccC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG--RAFCSGV 70 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g--~~F~~G~ 70 (145)
+-.++|++++ +.+-++++...+..+-+|-.+.-|||.-+. +-|..|+
T Consensus 32 ~~k~~l~~~~-----~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga 80 (138)
T PF11215_consen 32 VRKFSLSDDN-----STEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGGA 80 (138)
T ss_pred eeEEEcCCCc-----cHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCCc
Confidence 5556665543 778899999999999989899999998653 4455543
No 185
>PRK14556 pyrH uridylate kinase; Provisional
Probab=44.47 E-value=47 Score=25.12 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCccc
Q 032207 29 SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67 (145)
Q Consensus 29 ~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~ 67 (145)
+.+.++.+.+.++.+.+.++.+. .+++.|+.|.|..|.
T Consensus 31 ~~~~~d~~~~~~~a~~i~~~~~~-g~~i~iVvGGGni~R 68 (249)
T PRK14556 31 QGFGINVESAQPIINQIKTLTNF-GVELALVVGGGNILR 68 (249)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHh
Confidence 45679999999999999999854 579999999887665
No 186
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=44.36 E-value=40 Score=26.55 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+....+++++.. |.-+.+.+.++.++++.+...+++.+|+...
T Consensus 179 ~~~~iLvt~H~~t--~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~h 222 (346)
T PF02350_consen 179 PKPYILVTLHPVT--NEDNPERLEQILEALKALAERQNVPVIFPLH 222 (346)
T ss_dssp TSEEEEEE-S-CC--CCTHH--HHHHHHHHHHHHHHTTEEEEEE--
T ss_pred CCCEEEEEeCcch--hcCChHHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 4678999999876 6556888999999999998877788887665
No 187
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=42.88 E-value=71 Score=22.82 Aligned_cols=39 Identities=10% Similarity=0.355 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+++.+.+.++.++....+++++.
T Consensus 161 lllLDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 199 (218)
T cd03255 161 IILADEP--TGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199 (218)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4566777 48999999999999999987543444444444
No 188
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=41.99 E-value=35 Score=21.83 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
|+.+-..+|.+.++++++...++++|++-
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv 30 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTV 30 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 67888999999999999888888877764
No 189
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=41.80 E-value=48 Score=20.02 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhccCCCeeEEEEEcCCCccccc
Q 032207 35 RSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G 69 (145)
.+.+..|.+.++.+.....-.+.||+|.|..-..|
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g 43 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGG 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCC
Confidence 46778888889888877767888999998544444
No 190
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=41.75 E-value=78 Score=22.47 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+++.+.+.++.++ ...+++++.
T Consensus 155 llllDEP--t~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH 192 (211)
T cd03225 155 ILLLDEP--TAGLDPAGRRELLELLKKLKAE-GKTIIIVTH 192 (211)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 4566776 4899999999999999988754 434444443
No 191
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=40.74 E-value=96 Score=21.24 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|.+..+.+.+.+.++.++ ...+|+++.
T Consensus 103 illlDEP--~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh 140 (163)
T cd03216 103 LLILDEP--TAALTPAEVERLFKVIRRLRAQ-GVAVIFISH 140 (163)
T ss_pred EEEEECC--CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 3556666 5899999999999999988644 334444443
No 192
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=40.65 E-value=82 Score=22.50 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.+.....+++++.
T Consensus 149 llllDEP--t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh 187 (213)
T TIGR01277 149 ILLLDEP--FSALDPLLREEMLALVKQLCSERQRTLLMVTH 187 (213)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566776 48999999999999999987544444454444
No 193
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.14 E-value=79 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.452 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+++.+.+.++.++....+|+++.
T Consensus 152 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 190 (214)
T cd03297 152 LLLLDEP--FSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190 (214)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHHcCcEEEEEec
Confidence 4566676 48999999999999999986543444454444
No 194
>PF02081 TrpBP: Tryptophan RNA-binding attenuator protein; InterPro: IPR023558 The tryptophan RNA-binding attenuation protein (TRAP) regulates expression of the tryptophan biosynthetic genes in Bacillus sp. by binding to the leader region of the nascent trp operon mRNA []. The crystal structure of the Trp RNA-binding attenuation protein of Bacillus subtilis has been solved []. TRAP forms an oligomeric ring consisting of 11 single-domain subunits, where each subunit adopts a double-stranded beta-helix structure with the appearance of a beta-sandwich of distinct architecture and jelly-roll fold. The 11 subunits are stabilised by 11 inter-subunit strands, forming a beta-wheel with a large central hole. TRAP is activated by binding to tryptophan in clefts between adjacent beta-strands, which induces conformational changes in the protein. Activated TRAP binds an mRNA target sequence consisting of 11 (G/U)AG repeats, separated by 2-3 spacer nucleotides. The spacer nucleotides do not make direct contact with the TRAP protein, but they do influence the conformation of the RNA, which might influence the specificity of TRAP []. This entry represents the structural domain in the TRAP family of proteins.; PDB: 3ZTE_U 1GTN_H 1UTD_D 1GTF_D 1UTF_F 2ZP9_K 1C9S_Q 2EXT_A 3AQD_T 1QAW_C ....
Probab=40.07 E-value=55 Score=19.81 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=17.7
Q ss_pred CCCCCCCCcEEEEEcCCcEEEEEEcCCC
Q 032207 1 MGQTKSENLILVTRDPMGIAYVTINRPK 28 (145)
Q Consensus 1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~ 28 (145)
|......++|.+.-.+++|-+|.|.|..
T Consensus 1 m~~~~~~dyivIkA~e~gV~ViGlTRG~ 28 (75)
T PF02081_consen 1 MNENKNSDYIVIKALENGVTVIGLTRGT 28 (75)
T ss_dssp --------EEEEEESSTTEEEEEEESSS
T ss_pred CcccccCCEEEEEEecCCeEEEEEecCC
Confidence 6667778888888888999999999875
No 195
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=39.75 E-value=84 Score=22.66 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.++....+++++.
T Consensus 167 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 167 VLFADEP--TGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4667777 48999999999999999986543444444444
No 196
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=39.42 E-value=98 Score=22.60 Aligned_cols=38 Identities=11% Similarity=0.314 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+++.+.+.++.++... .|++.+
T Consensus 174 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~-tiiivs 211 (236)
T cd03267 174 ILFLDEP--TIGLDVVAQENIRNFLKEYNRERGT-TVLLTS 211 (236)
T ss_pred EEEEcCC--CCCCCHHHHHHHHHHHHHHHhcCCC-EEEEEe
Confidence 4667777 4899999999999999998654443 444444
No 197
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=39.18 E-value=86 Score=22.43 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.++....+|++|.
T Consensus 162 illlDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 200 (221)
T TIGR02211 162 LVLADEP--TGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200 (221)
T ss_pred EEEEeCC--CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566776 48999999999999999886544434444443
No 198
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=38.66 E-value=1.1e+02 Score=24.62 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=30.1
Q ss_pred HHHHHHh-cCCccEEEeechhccHHhHHHHHhc-CEEEEeCCcEEeccceee-eec
Q 032207 89 DTVAQME-RCRKPIIGAISGFAVTAGFEIALAC-DVLVAAKGAKFIDTHARL-VCK 141 (145)
Q Consensus 89 ~~~~~l~-~~~kp~Ia~v~G~a~GgG~~l~l~~-D~~ia~~~a~f~~pe~~~-G~~ 141 (145)
++++++. ..+.|+.+.+++...|.-.....-. -...+-++..+..|..++ |+.
T Consensus 231 ~fl~~L~~~~~lpv~~l~D~DP~G~~I~~tyk~GS~~~a~~s~~l~~P~~kwlGl~ 286 (367)
T PRK04342 231 RFIKRLNEELGLPVYVFTDGDPWGYYIYSVVKYGSIKLAHLSERLATPDAKFIGVT 286 (367)
T ss_pred HHHHHHHHhcCCCEEEEECCCccHHHHHHHHHhCchhhhhhhhhccCCCCEEecCc
Confidence 3344443 2479999999999877532222211 122233445677777777 654
No 199
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.59 E-value=86 Score=22.78 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....+|.+.+.++.++....+++++.
T Consensus 151 llllDEP--~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh 189 (232)
T cd03300 151 VLLLDEP--LGALDLKLRKDMQLELKRLQKELGITFVFVTH 189 (232)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4566777 48999999999999999987543444555554
No 200
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.47 E-value=89 Score=22.22 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.++....+++++.
T Consensus 149 llllDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 187 (211)
T cd03298 149 VLLLDEP--FAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187 (211)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4566776 48999999999999999886543444444443
No 201
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.01 E-value=1.8e+02 Score=22.17 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.=.|.++.|. +|..+.+.+++|.+.++..+ |+-..+|+..
T Consensus 155 ~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~--~~~~~LVl~a 194 (270)
T PRK06731 155 VDYILIDTAG-KNYRASETVEEMIETMGQVE--PDYICLTLSA 194 (270)
T ss_pred CCEEEEECCC-CCcCCHHHHHHHHHHHhhhC--CCeEEEEEcC
Confidence 4456666665 56677777777777776554 3334555543
No 202
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.88 E-value=1e+02 Score=22.04 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+.+.+.+.++.++....+|+++.
T Consensus 152 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 152 VLFLDEP--TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 (220)
T ss_pred EEEEcCC--ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4567777 48999999999999999987653444555544
No 203
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=37.31 E-value=1e+02 Score=21.45 Aligned_cols=39 Identities=10% Similarity=0.303 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.+..+.+.+.+.++.++....+++++.
T Consensus 118 llllDEP--~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 118 ILLLDEP--TSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred EEEEeCC--ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4556676 48999999999999999886542334444443
No 204
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.31 E-value=91 Score=22.62 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.++....+|+++.
T Consensus 157 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 157 LLLYDEP--TAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred EEEecCC--cccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 4566776 48999999999999999986543334444443
No 205
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=36.98 E-value=94 Score=23.24 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.++....+|+++.
T Consensus 164 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 164 LIMFDEP--FVGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 4666777 59999999999999999987554444455544
No 206
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=36.98 E-value=69 Score=23.87 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=42.9
Q ss_pred HHHHHHHhhccC-CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh-ccHHhHHHH
Q 032207 40 DMAQAFKSLDKD-ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF-AVTAGFEIA 117 (145)
Q Consensus 40 ~l~~~l~~~~~~-~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~-a~GgG~~l~ 117 (145)
...++|+++..+ .+|..||..+.-+.+.-|.|.. +.++|.--|..--.-++|. |.||...|.
T Consensus 107 Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~----------------l~~~LgL~~~v~R~~i~~~GC~gg~~~L~ 170 (226)
T PF00195_consen 107 AARKALAEAGLDPSDITHLVTVSCTGIAAPGLDAR----------------LINRLGLRPDVQRTPIFGMGCAGGAAGLR 170 (226)
T ss_dssp HHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHH----------------HHHHHT--TTSEEEEEES-GGGHHHHHHH
T ss_pred HHHHHHHHcCCCCcccceEEEEecCCcCCCchhHH----------------HHhcCCCCCCcEEEEEeccchhhHHHHHH
Confidence 334456665544 4677777766555666776644 3444444444445556665 788888888
Q ss_pred HhcCEEEEeCCcE
Q 032207 118 LACDVLVAAKGAK 130 (145)
Q Consensus 118 l~~D~~ia~~~a~ 130 (145)
.+.||.-+.++++
T Consensus 171 ~A~~~~~~~p~a~ 183 (226)
T PF00195_consen 171 RAKDIARANPGAR 183 (226)
T ss_dssp HHHHHHHHSTT-E
T ss_pred HHHHHHhCCccce
Confidence 8888765555544
No 207
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.95 E-value=1e+02 Score=22.15 Aligned_cols=39 Identities=8% Similarity=0.277 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....++.+.+.++.++....+++++.
T Consensus 152 lllLDEP--t~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH 190 (220)
T cd03293 152 VLLLDEP--FSALDALTREQLQEELLDIWRETGKTVLLVTH 190 (220)
T ss_pred EEEECCC--CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4566776 48999999999999999885443434444443
No 208
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.83 E-value=91 Score=23.61 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-+|.| .+.+|.....++.+.+.++.++....+|++|..
T Consensus 166 illlDEP--t~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 166 IIVLDEP--TAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred EEEEECC--cccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4667777 489999999999999999875544556666543
No 209
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=36.78 E-value=96 Score=22.42 Aligned_cols=40 Identities=8% Similarity=0.208 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|....+.+.+.+.++.++....+|+++..
T Consensus 158 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 158 VLLLDEI--TSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4566777 489999999999999999875444445555543
No 210
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.70 E-value=1.1e+02 Score=21.21 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~ 60 (145)
.+-|+.| .+.+|......+.+.+.++.++....+++++
T Consensus 121 llilDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 158 (178)
T cd03229 121 VLLLDEP--TSALDPITRREVRALLKSLQAQLGITVVLVT 158 (178)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4556666 4889999999999999988754333344443
No 211
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=36.43 E-value=1e+02 Score=22.36 Aligned_cols=39 Identities=10% Similarity=0.319 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|.....++.+.+.++.++....+++++.
T Consensus 135 lllLDEP--t~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH 173 (230)
T TIGR01184 135 VLLLDEP--FGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173 (230)
T ss_pred EEEEcCC--CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566776 48999999999999999886543444444443
No 212
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.26 E-value=99 Score=22.01 Aligned_cols=39 Identities=15% Similarity=0.437 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.+.....+++++.
T Consensus 151 ~lllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 189 (213)
T cd03259 151 LLLLDEP--LSALDAKLREELREELKELQRELGITTIYVTH 189 (213)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4566777 48999999999999999886533333444433
No 213
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=36.21 E-value=1.2e+02 Score=21.17 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
..+-++-|+ +.|.+.+...|.+.+..+.. ....+++-|-.
T Consensus 259 ~illiDEpE--~~LHp~~q~~l~~~l~~~~~-~~~QviitTHS 298 (303)
T PF13304_consen 259 SILLIDEPE--NHLHPSWQRKLIELLKELSK-KNIQVIITTHS 298 (303)
T ss_dssp SEEEEESSS--TTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-
T ss_pred eEEEecCCc--CCCCHHHHHHHHHHHHhhCc-cCCEEEEeCcc
Confidence 347788887 88999999999999988876 45677666643
No 214
>PRK14053 methyltransferase; Provisional
Probab=36.08 E-value=56 Score=23.65 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=40.6
Q ss_pred CcEEEEEEcCCCC---CCCCCHHHHH---HHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhh
Q 032207 17 MGIAYVTINRPKS---LNSLTRSMMA---DMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAED 77 (145)
Q Consensus 17 ~~v~~i~l~~~~~---~N~l~~~~~~---~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~ 77 (145)
..|+++||...-. .-++.-.... .+...+..+-.+|++|.+++.|.. +..-+|--|..+.+
T Consensus 22 S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~ 89 (194)
T PRK14053 22 SRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHA 89 (194)
T ss_pred CcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 5699999986421 1122211111 366777777789999999999976 67777776666554
No 215
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=35.88 E-value=1e+02 Score=22.12 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+++.+.+.++.++....+|+++.
T Consensus 166 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 204 (228)
T cd03257 166 LLIADEP--TSALDVSVQAQILDLLKKLQEELGLTLLFITH 204 (228)
T ss_pred EEEecCC--CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3556666 48899999999999998887543334444443
No 216
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=35.65 E-value=2.1e+02 Score=22.92 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCccccc
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G 69 (145)
+.+..+... ++...+.++..+..|..-+..=--|.++-+... .++-+|++||.|+.=..|
T Consensus 233 ~~hl~v~~~-~g~~~~~l~~~~~~~~~rPsvDvlF~S~A~~~~--~~~~~viLTGmG~DGa~g 292 (350)
T COG2201 233 DYHLEVSRS-GGNYRLKLTDGPPVNGHRPSVDVLFRSVAELYG--SNALGVILTGMGSDGAAG 292 (350)
T ss_pred CceEEEEec-CCeeEEEeCCCCCCCCcCCChhHHHHHHHHHcC--CCEEEEEEecCChhHHHH
Confidence 456777776 555788888766566655433323333333333 357899999987544444
No 217
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=35.61 E-value=89 Score=23.23 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=27.3
Q ss_pred CeeEEEEEcCC-CcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207 53 SVLVIILSGSG-RAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF 108 (145)
Q Consensus 53 ~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~ 108 (145)
.+.++||||+. +.|+ |..++. ++..+...+....|+++..+-||
T Consensus 59 ky~gfvIsGS~~dAf~---d~dWI~---------KLcs~~kkld~mkkkvlGICFGH 103 (245)
T KOG3179|consen 59 KYDGFVISGSKHDAFS---DADWIK---------KLCSFVKKLDFMKKKVLGICFGH 103 (245)
T ss_pred hhceEEEeCCcccccc---cchHHH---------HHHHHHHHHHhhccceEEEeccH
Confidence 36688888876 7776 444433 34455566666667666666555
No 218
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=35.57 E-value=35 Score=26.26 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCCeeEEEEEcC
Q 032207 41 MAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 41 l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
+...++.+.+|+.||+|+++|+
T Consensus 8 ~~~Il~~A~~d~rIraV~l~GS 29 (282)
T PF04439_consen 8 MDLILEFAKQDERIRAVILNGS 29 (282)
T ss_dssp HHHHHHHHHH-TTEEEEEE---
T ss_pred HHHHHHHHhcCCcEEEEEEecC
Confidence 3445666778999999999996
No 219
>PRK11096 ansB L-asparaginase II; Provisional
Probab=35.53 E-value=2.3e+02 Score=22.56 Aligned_cols=40 Identities=3% Similarity=0.047 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
|-...+.+-+ ..-++++-+.+|.+.+++ +++++..+|++.
T Consensus 69 i~~~~~~~~d-S~~~t~~~~~~l~~~i~~--~~~~~dGiVVtH 108 (347)
T PRK11096 69 VKGEQVVNIG-SQDMNDEVWLTLAKKINT--DCDKTDGFVITH 108 (347)
T ss_pred EEEEEcccCC-cccCCHHHHHHHHHHHHH--hcCCCCEEEEeC
Confidence 4444444433 344677888888888887 345566666664
No 220
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=35.42 E-value=68 Score=24.02 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=29.4
Q ss_pred cHHHHHHHHHhcCCccEEEee---------chhccHHh-----HHHHHhcCEEEEeC
Q 032207 85 DVETDTVAQMERCRKPIIGAI---------SGFAVTAG-----FEIALACDVLVAAK 127 (145)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Ia~v---------~G~a~GgG-----~~l~l~~D~~ia~~ 127 (145)
+.+.+.++-+...+||..-++ .|.|+|-| ++++..|.--+...
T Consensus 125 ~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGK 181 (262)
T KOG3040|consen 125 QRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGK 181 (262)
T ss_pred HHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecC
Confidence 456778888889998776665 48888877 45555555555543
No 221
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=35.33 E-value=1.2e+02 Score=21.93 Aligned_cols=39 Identities=10% Similarity=0.434 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....++.+.+.++.++....+|+++.
T Consensus 152 illlDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 190 (230)
T TIGR03410 152 LLLLDEP--TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQ 190 (230)
T ss_pred EEEecCC--cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4566777 58999999999999999987543434444444
No 222
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=35.31 E-value=96 Score=22.99 Aligned_cols=40 Identities=10% Similarity=0.316 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-+|.| .+.+|....+.|.+.+.++.++....+|+++..
T Consensus 173 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 173 VILADEP--IASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred EEEecCc--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4667777 489999999999999999875444445555543
No 223
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.16 E-value=1e+02 Score=22.40 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.++....+|+++.
T Consensus 165 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 203 (241)
T cd03256 165 LILADEP--VASLDPASSRQVMDLLKRINREEGITVIVSLH 203 (241)
T ss_pred EEEEeCc--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566776 48999999999999999886543444455444
No 224
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=35.15 E-value=1.2e+02 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.379 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+++.+.+.++.+. ...+|+++.
T Consensus 159 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH 196 (216)
T TIGR00960 159 LLLADEP--TGNLDPELSRDIMRLFEEFNRR-GTTVLVATH 196 (216)
T ss_pred EEEEeCC--CCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4566776 4999999999999999998643 434455444
No 225
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=35.14 E-value=99 Score=23.08 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|......+.+.+.++.++....+|+++.
T Consensus 170 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH 208 (267)
T PRK15112 170 VIIADEA--LASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 4667777 48999999999999999987543444555554
No 226
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=34.99 E-value=1.1e+02 Score=21.81 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+++.+.+.++.++....+|+++.
T Consensus 151 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH 189 (213)
T cd03301 151 VFLMDEP--LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTH 189 (213)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4566777 48899999999999999886543434444443
No 227
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=34.72 E-value=1.2e+02 Score=22.82 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhccC-CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207 35 RSMMADMAQAFKSLDKD-ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~-~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
.+..+.|..+++.+.+. +++..||++|.= .. ....+.+.++...+..+++|+....-.+-.
T Consensus 36 ~~~~~~l~~~i~~i~~~~~~~D~vvitGDl---------~~------~~~~~~~~~~~~~l~~l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 36 VNTWESYQAVLEAIRAQQHEFDLIVATGDL---------AQ------DHSSEAYQHFAEGIAPLRKPCVWLPGNHDF 97 (275)
T ss_pred cCHHHHHHHHHHHHHhhCCCCCEEEECCCC---------CC------CCCHHHHHHHHHHHhhcCCcEEEeCCCCCC
Confidence 34566777888777543 467789999852 11 000122344455566677887666655554
No 228
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=34.64 E-value=1.2e+02 Score=21.59 Aligned_cols=38 Identities=11% Similarity=0.413 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|.....++.+.+.++.+ ....+|+++.
T Consensus 153 llllDEP--t~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH 190 (213)
T cd03235 153 LLLLDEP--FAGVDPKTQEDIYELLRELRR-EGMTILVVTH 190 (213)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeC
Confidence 3556666 489999999999999998865 3333444443
No 229
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=34.64 E-value=1.2e+02 Score=22.06 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+++.+.+.++.++....+|+++.
T Consensus 166 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH 204 (233)
T PRK11629 166 LVLADEP--TGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204 (233)
T ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4566776 48899999999999999886543434444444
No 230
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=34.48 E-value=68 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCccEEEeechh
Q 032207 88 TDTVAQMERCRKPIIGAISGF 108 (145)
Q Consensus 88 ~~~~~~l~~~~kp~Ia~v~G~ 108 (145)
.++++......+|+++.+.|.
T Consensus 90 ~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 90 LALLRAALERGKPILGICRGM 110 (189)
T ss_pred HHHHHHHHHCCCCEEEEcchH
Confidence 445556666789999888876
No 231
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.25 E-value=1.2e+02 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .|.||+....++.+.+..+.++.. +.|++++
T Consensus 157 lliLDEP--t~GLDp~~~~~~~~~l~~l~~~g~-~tvliss 194 (293)
T COG1131 157 LLILDEP--TSGLDPESRREIWELLRELAKEGG-VTILLST 194 (293)
T ss_pred EEEECCC--CcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeC
Confidence 4567777 499999999999999999997765 4555554
No 232
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.20 E-value=1.2e+02 Score=22.25 Aligned_cols=39 Identities=13% Similarity=0.350 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.+.....+|+++.
T Consensus 174 llllDEP--t~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH 212 (255)
T PRK11300 174 ILMLDEP--AAGLNPKETKELDELIAELRNEHNVTVLLIEH 212 (255)
T ss_pred EEEEcCC--ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 4566666 59999999999999999987543444555544
No 233
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=34.13 E-value=1.4e+02 Score=21.12 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+.+.+.+.++.+. ...+++++.
T Consensus 132 illlDEP--~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh 169 (194)
T cd03213 132 LLFLDEP--TSGLDSSSALQVMSLLRRLADT-GRTIICSIH 169 (194)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 4566777 4899999999999999998644 333444443
No 234
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=34.08 E-value=2e+02 Score=21.62 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCC--CCCC--------CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccH
Q 032207 17 MGIAYVTINRPK--SLNS--------LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDV 86 (145)
Q Consensus 17 ~~v~~i~l~~~~--~~N~--------l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (145)
+++..|.||... +.|. ...+.++-|.+.|+++++.. -+++|+.--+... .+.+.. ...
T Consensus 168 ~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~-~~v~I~~HiPp~~-~~~~~~----------~~~ 235 (296)
T cd00842 168 PGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAG-EKVWIIGHIPPGV-NSYDTL----------ENW 235 (296)
T ss_pred CCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCC-CeEEEEeccCCCC-cccccc----------hHH
Confidence 889999999642 2222 33678999999999987544 4677765433221 111110 111
Q ss_pred HHHHHHHHhcCCccEEEeechhcc
Q 032207 87 ETDTVAQMERCRKPIIGAISGFAV 110 (145)
Q Consensus 87 ~~~~~~~l~~~~kp~Ia~v~G~a~ 110 (145)
..++...+.+.+-.+++.+.||..
T Consensus 236 ~~~~~~ii~~y~~~i~~~~~GH~H 259 (296)
T cd00842 236 SERYLQIINRYSDTIAGQFFGHTH 259 (296)
T ss_pred HHHHHHHHHHHHHhhheeeecccc
Confidence 123334455555666778888854
No 235
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=33.97 E-value=1.1e+02 Score=22.35 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.++....+|+++.
T Consensus 166 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 166 LILADEP--IASLDPKTSKQVMDYLKRINKEDGITVIINLH 204 (243)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3556676 48999999999999999886543434444444
No 236
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.94 E-value=1.1e+02 Score=22.11 Aligned_cols=39 Identities=3% Similarity=0.256 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|......+.+.+.++.++....+++++.
T Consensus 161 lllLDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 199 (233)
T cd03258 161 VLLCDEA--TSALDPETTQSILALLRDINRELGLTIVLITH 199 (233)
T ss_pred EEEecCC--CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4567777 48999999999999999886543434444443
No 237
>PRK10908 cell division protein FtsE; Provisional
Probab=33.87 E-value=1.3e+02 Score=21.64 Aligned_cols=38 Identities=13% Similarity=0.345 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+++.+.+.++.++ ...+++++.
T Consensus 158 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH 195 (222)
T PRK10908 158 VLLADEP--TGNLDDALSEGILRLFEEFNRV-GVTVLMATH 195 (222)
T ss_pred EEEEeCC--CCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4566776 4899999999999999998644 334444444
No 238
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=33.79 E-value=1.1e+02 Score=22.73 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.+.....+|+++.
T Consensus 149 lllLDEP--t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH 187 (255)
T PRK11248 149 LLLLDEP--FGALDAFTREQMQTLLLKLWQETGKQVLLITH 187 (255)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4567777 48999999999999999885433334444443
No 239
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.69 E-value=1.1e+02 Score=23.23 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| .+.+|.....++.+.+.++.++....+|++|..
T Consensus 166 llllDEP--t~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd 205 (290)
T PRK13634 166 VLVLDEP--TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205 (290)
T ss_pred EEEEECC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4567777 489999999999999999876544555555543
No 240
>COG4637 Predicted ATPase [General function prediction only]
Probab=33.68 E-value=1.1e+02 Score=24.49 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
..+.+|-|+ |.+-++++..|.+.+..+.+.. .++|.|-+
T Consensus 292 ~ll~ldEPE--~sLHP~lL~~La~~~~sAak~s--Qv~VsTHS 330 (373)
T COG4637 292 PLLLLDEPE--TSLHPDLLPALAELMRSAAKRS--QVIVSTHS 330 (373)
T ss_pred ceeEecCcc--cccCHhHHHHHHHHHHHhhccc--eEEEEeCC
Confidence 457788887 8999999999999999999765 56666654
No 241
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=33.56 E-value=1.1e+02 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .|.+|......+.+.+.++.++....+|+++.
T Consensus 154 lllLDEP--t~~LD~~~~~~l~~~L~~~~~~~~~tviivsH 192 (257)
T PRK11247 154 LLLLDEP--LGALDALTRIEMQDLIESLWQQHGFTVLLVTH 192 (257)
T ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4566777 49999999999999999885443334444443
No 242
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=33.52 E-value=1.3e+02 Score=20.91 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~ 60 (145)
.+-|+.| .+.+|....+++.+.+.++.++ ...+++++
T Consensus 148 llllDEP--t~~LD~~~~~~~~~~l~~~~~~-~~tili~s 184 (190)
T TIGR01166 148 VLLLDEP--TAGLDPAGREQMLAILRRLRAE-GMTVVIST 184 (190)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHc-CCEEEEEe
Confidence 4667777 4899999999999999998654 43444444
No 243
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=33.50 E-value=76 Score=26.79 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=31.6
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCccccc
Q 032207 22 VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69 (145)
Q Consensus 22 i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G 69 (145)
+.|+-|- |=||.+.++.|.++|.... -.||+-+..+.|...
T Consensus 461 LiLDEPT--NhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 461 LLLDEPT--NHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLDR 501 (530)
T ss_pred EEEcCCC--ccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHh
Confidence 5677774 9999999999999999886 466666666666543
No 244
>PRK01160 hypothetical protein; Provisional
Probab=33.28 E-value=1.3e+02 Score=21.59 Aligned_cols=39 Identities=18% Similarity=0.483 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.++.++|+ -.++.+.++.+.+++..++.+.. ..|.+.|+
T Consensus 86 ~i~V~NPp--GtIt~el~~ai~~a~~~~~~~~~-~~I~VdGE 124 (178)
T PRK01160 86 SITVRNPP--GTITLALLRAIKKAFSLIERGKK-VRIEVNGE 124 (178)
T ss_pred EEEEECCC--CcccHHHHHHHHHHHHhhhcCCe-EEEEEcCh
Confidence 47788886 68999999999999887664432 34556665
No 245
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=33.16 E-value=1.1e+02 Score=23.76 Aligned_cols=40 Identities=13% Similarity=0.375 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.|.+|.| .++||.....++.+.|.++.++....+|++|..
T Consensus 179 llilDEP--ts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 179 LLIADEP--TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred EEEEeCC--CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4566666 489999999999999999986555666666643
No 246
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=32.96 E-value=49 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=21.1
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcCCCccc
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGSGRAFC 67 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~g~~F~ 67 (145)
+++.++++.++.+++++-|+||| |+-|.
T Consensus 128 ~~~~~~i~~i~~~~~i~~VvltG-GEPL~ 155 (321)
T TIGR03821 128 AQWKEALEYIAQHPEINEVILSG-GDPLM 155 (321)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeC-ccccc
Confidence 46666777777788899999999 54443
No 247
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.84 E-value=1.3e+02 Score=20.73 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+++.+.+.++.++ ...+++++.
T Consensus 116 illlDEP--t~~LD~~~~~~l~~~l~~~~~~-g~tiii~th 153 (173)
T cd03230 116 LLILDEP--TSGLDPESRREFWELLRELKKE-GKTILLSSH 153 (173)
T ss_pred EEEEeCC--ccCCCHHHHHHHHHHHHHHHHC-CCEEEEECC
Confidence 4566666 4889999999999999988754 333444443
No 248
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=32.81 E-value=55 Score=23.42 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCCCCCCCH------HHH---HHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhh
Q 032207 16 PMGIAYVTINRPKSLNSLTR------SMM---ADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAED 77 (145)
Q Consensus 16 ~~~v~~i~l~~~~~~N~l~~------~~~---~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~ 77 (145)
+..|+++||........+.. ... -.+...+..+-.+|++|.+++.|.. +..-+|--|..+..
T Consensus 21 ~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh~ 92 (176)
T PF04208_consen 21 ESPVAVCTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALHE 92 (176)
T ss_pred CCCEEEEECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHHH
Confidence 36799999987532111111 111 1366777788889999999999976 66666666655543
No 249
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.81 E-value=1.1e+02 Score=22.31 Aligned_cols=39 Identities=13% Similarity=0.372 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|......+.+.+.++..+...-+|+++.
T Consensus 156 llllDEP--t~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH 194 (242)
T cd03295 156 LLLMDEP--FGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194 (242)
T ss_pred EEEecCC--cccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4566777 59999999999999999987543333444443
No 250
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=32.72 E-value=1.4e+02 Score=20.47 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=25.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.+. ...+++++.
T Consensus 117 ~lllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh 154 (173)
T cd03246 117 ILVLDEP--NSHLDVEGERALNQAIAALKAA-GATRIVIAH 154 (173)
T ss_pred EEEEECC--ccccCHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 3556666 4889999999999999888643 333444433
No 251
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=32.71 E-value=1.3e+02 Score=22.71 Aligned_cols=38 Identities=16% Similarity=0.440 Sum_probs=30.1
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 22 VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 22 i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
+-|+-|- -|||++|+.|..+.+..+.++. ..-+++|-+
T Consensus 158 mLFDEPT--SALDPElv~EVL~vm~~LA~eG-mTMivVTHE 195 (240)
T COG1126 158 MLFDEPT--SALDPELVGEVLDVMKDLAEEG-MTMIIVTHE 195 (240)
T ss_pred EeecCCc--ccCCHHHHHHHHHHHHHHHHcC-CeEEEEech
Confidence 5566664 8999999999999999999765 566666643
No 252
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=32.68 E-value=2.1e+02 Score=21.50 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHH--------HHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHH
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQA--------FKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVET 88 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~--------l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (145)
..|++|++.. .|+ +.+|...+..+ ++....+.+..+||+-| .||.|=-|.. ..-.. .....
T Consensus 3 ~kvaVi~fpG---tN~-d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pG---GFSyGDyLr~---Gaiaa-~~~v~ 71 (231)
T COG0047 3 PKVAVLRFPG---TNC-DYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPG---GFSYGDYLRA---GAIAA-IAPVM 71 (231)
T ss_pred ceEEEEEcCC---cCc-hHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcC---CCCcccccCc---chHHh-hHHHH
Confidence 3577777733 465 66777666621 11111112466777655 3888754441 00001 13334
Q ss_pred HHHHHHhcCCccEEEeechhccHH
Q 032207 89 DTVAQMERCRKPIIGAISGFAVTA 112 (145)
Q Consensus 89 ~~~~~l~~~~kp~Ia~v~G~a~Gg 112 (145)
+-++.+..-.+|++..+||.-+-.
T Consensus 72 ~~v~~~a~~g~~vLGICNGfQiL~ 95 (231)
T COG0047 72 DEVREFAEKGKPVLGICNGFQILS 95 (231)
T ss_pred HHHHHHHHCCCeEEEEcchhHHHH
Confidence 445566668999999999986554
No 253
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=32.63 E-value=1.2e+02 Score=22.55 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|......+.+.+.++.++....+|+++.
T Consensus 164 llllDEP--t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 164 IMLLDEP--TTWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred EEEEeCc--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566777 48999999999999999986544444555554
No 254
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=32.59 E-value=1.3e+02 Score=21.89 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| .+.+|....+++.+.+.++.+.....+|+++..
T Consensus 153 llllDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 153 LLLLDEP--TVGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred EEEEcCC--ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4566777 489999999999999999864333344444443
No 255
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=32.48 E-value=1.2e+02 Score=22.31 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+++.+.+.++.++....+|+++.
T Consensus 172 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 172 LVFMDEP--TGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 4567777 48999999999999999886543444455544
No 256
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=32.45 E-value=61 Score=23.41 Aligned_cols=93 Identities=18% Similarity=0.113 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCC-CcccccCCchhhhhhcccCc--ccHH------
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS--GSG-RAFCSGVDLTSAEDVFKGDV--KDVE------ 87 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g-~~F~~G~dl~~~~~~~~~~~--~~~~------ 87 (145)
|+.|+++.=. +....+++.+++..+.+ .++.+||- +.+ +.......+-.+........ ....
T Consensus 61 igYi~i~~f~-----~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 133 (224)
T cd06567 61 IGYIRIPSFS-----AESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETE 133 (224)
T ss_pred eEEEEECccC-----CcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeE
Confidence 7888885421 36778888888888876 57888874 433 22222222222111000000 0000
Q ss_pred HHHHHHHhcCCccEEEeechhccHHhHHHHH
Q 032207 88 TDTVAQMERCRKPIIGAISGFAVTAGFEIAL 118 (145)
Q Consensus 88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l 118 (145)
......-....+|++..+++.+..++=.++.
T Consensus 134 ~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~ 164 (224)
T cd06567 134 YVAPGGGSLYDGPLVVLVNEGSASASEIFAG 164 (224)
T ss_pred EecCCCCcccCCCEEEEECCCCccHHHHHHH
Confidence 0001112346889999999998887755554
No 257
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=32.35 E-value=97 Score=23.34 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=28.8
Q ss_pred CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE
Q 032207 16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60 (145)
Q Consensus 16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~ 60 (145)
+++|+.|+++. |+....++|.++++++++. .++.+||-
T Consensus 63 ~~~IGYi~i~~------F~~~~~~~l~~a~~~l~~~-~~~~LIlD 100 (256)
T cd07561 63 GKKVGYLVYNS------FTSGYDDELNQAFAEFKAQ-GVTELVLD 100 (256)
T ss_pred CCcEEEEEECc------cccchHHHHHHHHHHHHHc-CCCeEEEE
Confidence 36699999964 5555778999999999854 47778774
No 258
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=31.96 E-value=40 Score=23.56 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=18.9
Q ss_pred CeeEEEEEcCCCcccccCCchhhhhh
Q 032207 53 SVLVIILSGSGRAFCSGVDLTSAEDV 78 (145)
Q Consensus 53 ~v~~vvl~g~g~~F~~G~dl~~~~~~ 78 (145)
++++.=+.|.....|+|.||....+.
T Consensus 79 Si~v~D~Agn~hVLCaGIDLNPAi~a 104 (178)
T PF12268_consen 79 SIKVKDLAGNNHVLCAGIDLNPAIDA 104 (178)
T ss_pred ccccccCCCCceeEEecccCCHhHhh
Confidence 35555566777999999999875543
No 259
>PRK04155 chaperone protein HchA; Provisional
Probab=31.79 E-value=94 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=21.4
Q ss_pred cHHHHHHHHHhcCCccEEEeechhc
Q 032207 85 DVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
..+.++++.+....||+.+.++|++
T Consensus 167 ~~l~~ll~~~~~~~K~VaAICHGPa 191 (287)
T PRK04155 167 EDVAAALQWALDNDRFIITLCHGPA 191 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHH
Confidence 3467788888899999999999995
No 260
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=31.74 E-value=51 Score=25.70 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-------c---------ccHHHHHHHHHhcCCccEE
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-------V---------KDVETDTVAQMERCRKPII 102 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-------~---------~~~~~~~~~~l~~~~kp~I 102 (145)
+++.++++.+++++.++-|+|||..+..-.--++.++.+..... . .....++++.+....+++.
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~ 201 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVY 201 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEE
Confidence 67778888888788899999999654432233444443321110 0 0011345556666666666
Q ss_pred Eeechh
Q 032207 103 GAISGF 108 (145)
Q Consensus 103 a~v~G~ 108 (145)
..+++.
T Consensus 202 i~l~~~ 207 (321)
T TIGR03822 202 VALHAN 207 (321)
T ss_pred EEecCC
Confidence 666664
No 261
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.72 E-value=1.2e+02 Score=21.99 Aligned_cols=39 Identities=10% Similarity=0.334 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|......+.+.+.++.++....+|+++.
T Consensus 157 llllDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 195 (239)
T cd03296 157 VLLLDEP--FGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195 (239)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4667777 48999999999999999987543434444444
No 262
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=31.72 E-value=1.3e+02 Score=22.12 Aligned_cols=40 Identities=5% Similarity=0.289 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|......+.+.+.++.++....+|+++..
T Consensus 167 llllDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 167 VMLFDEV--TSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 4667777 489999999999999999875444455555543
No 263
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.70 E-value=1.5e+02 Score=20.91 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+++.+.+.++.+. .. .+++.+
T Consensus 147 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~-tii~~s 183 (205)
T cd03226 147 LLIFDEP--TSGLDYKNMERVGELIRELAAQ-GK-AVIVIT 183 (205)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHC-CC-EEEEEe
Confidence 4567776 4899999999999999988643 33 344443
No 264
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=31.57 E-value=69 Score=23.87 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=40.9
Q ss_pred CCcEEEEEEcCCCC-------CCCCCHHHHH---HHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhh
Q 032207 16 PMGIAYVTINRPKS-------LNSLTRSMMA---DMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAED 77 (145)
Q Consensus 16 ~~~v~~i~l~~~~~-------~N~l~~~~~~---~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~ 77 (145)
+..|+++||..... .=++.-.... .+...+..+-.+|++|.+|+.|.- +..-+|--|..+.+
T Consensus 24 ~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~~ 96 (225)
T PRK00964 24 ESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALHE 96 (225)
T ss_pred CCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 36799999987531 1112111111 366777777789999999999986 66767766666544
No 265
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=31.41 E-value=1.2e+02 Score=22.79 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-+|.| .+.+|.....+|.+.+.++.++....+|+++..
T Consensus 165 llllDEP--t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 165 CIIFDEP--TAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4566777 489999999999999999865434445555543
No 266
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.35 E-value=1.6e+02 Score=20.96 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.++....+++++.
T Consensus 139 llllDEP--t~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 139 VLCWDNS--TRGLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 4566666 48899999999999999987654444454444
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.16 E-value=1.5e+02 Score=20.27 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .+.+|....+++.+.+.++.+ . +.+++++.
T Consensus 117 llllDEP--~~gLD~~~~~~l~~~l~~~~~--~-~tii~~sh 153 (171)
T cd03228 117 ILILDEA--TSALDPETEALILEALRALAK--G-KTVIVIAH 153 (171)
T ss_pred EEEEECC--CcCCCHHHHHHHHHHHHHhcC--C-CEEEEEec
Confidence 4667776 488999999999999998853 3 45555543
No 268
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=31.15 E-value=1.5e+02 Score=20.78 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+.+.+.+.++.++ ...+++++.
T Consensus 155 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh 192 (206)
T TIGR03608 155 LILADEP--TGSLDPKNRDEVLDLLLELNDE-GKTIIIVTH 192 (206)
T ss_pred EEEEeCC--cCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 4667777 4899999999999999998653 434444443
No 269
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=31.12 E-value=1.3e+02 Score=22.03 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++..+....+|+++.
T Consensus 169 vlllDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 169 LVFMDEP--TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566776 58999999999999999876544445555554
No 270
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=31.01 E-value=1.2e+02 Score=21.27 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCccEEEeechhc
Q 032207 86 VETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 86 ~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
.+.++++......+|+++.+.|+-
T Consensus 69 ~~~~~i~~~~~~~~pilgiC~G~q 92 (188)
T cd01741 69 KLKELIRQALAAGKPVLGICLGHQ 92 (188)
T ss_pred HHHHHHHHHHHCCCCEEEECccHH
Confidence 345666666677899999888873
No 271
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=30.96 E-value=73 Score=23.82 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=40.4
Q ss_pred CcEEEEEEcCCCCC-------CCCCHHHHH---HHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhh
Q 032207 17 MGIAYVTINRPKSL-------NSLTRSMMA---DMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAED 77 (145)
Q Consensus 17 ~~v~~i~l~~~~~~-------N~l~~~~~~---~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~ 77 (145)
..|+++||...... -++.-.... .+...+..+-.+|++|.+++.|.. +..-+|--|..+.+
T Consensus 25 SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TENlGIEKvIaNvisNpNIRflilcG~Ev~GHltGqsL~aLh~ 96 (238)
T TIGR01111 25 SPVLVVTLGSHIEEQIILDAGAAIAGPCKTENLGIEKVVANIISNPNIRFLILCGSEVQGHITGQSFKALHE 96 (238)
T ss_pred CceEEEEccccccccchhhcCceeeccccccccCHHHHHHHHhcCCCceEEEEecCcccCccccHHHHHHHH
Confidence 67999999875311 111111111 366777777789999999999976 67777766666544
No 272
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=30.95 E-value=1.3e+02 Score=22.35 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| .+.+|....+++.+.+.++.++....+|+++..
T Consensus 168 lllLDEP--t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 168 CLLLDEP--TSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4566777 489999999999999999875544445555543
No 273
>PRK14642 hypothetical protein; Provisional
Probab=30.87 E-value=2.1e+02 Score=20.86 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHhhcc
Q 032207 6 SENLILVTRDPMGIAYVTINRPK----------SLNSLTRSMMADMAQAFKSLDK 50 (145)
Q Consensus 6 ~~~~i~~~~~~~~v~~i~l~~~~----------~~N~l~~~~~~~l~~~l~~~~~ 50 (145)
.++.+.++...+++++|.++++. +.+.++.+-+..+.+.+..+-+
T Consensus 15 G~eLvdve~~~~~~LrV~ID~~~~~~~~~~~~~~~~gVtidDC~~vSR~Is~~LD 69 (197)
T PRK14642 15 GYDLVEIERSAGGLLRVTIDLPWVPPTEGAPVGPEQFVTVEDCEKVTRQLQFALE 69 (197)
T ss_pred CCEEEEEEEecCCEEEEEEecCccccccccccccCCCccHHHHHHHHHHHHHHhc
Confidence 45667777776789999999862 2367999999999888877654
No 274
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=30.67 E-value=1.7e+02 Score=20.59 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+.+.+.+.++.++....+++++.
T Consensus 92 lllLDEP--ts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 92 FYLFDEP--SAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred EEEEECC--cccCCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 3556666 48899999999999998886543234444444
No 275
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=30.66 E-value=1.3e+02 Score=22.71 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .+.+|....+.+.+.+.++.++....+|+++..
T Consensus 175 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 175 YLLLDEP--TAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred EEEEcCc--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4566777 489999999999999999876544445555543
No 276
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=30.61 E-value=1.5e+02 Score=18.90 Aligned_cols=49 Identities=12% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH-HhcCCccEEEeech
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ-MERCRKPIIGAISG 107 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~-l~~~~kp~Ia~v~G 107 (145)
+++.++++++-+++++-+|++|-. ..+...+..++ +.+..+|+|..+.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~--------------------~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDD--------------------DLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehh--------------------HhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 567888888766788888888752 11222333444 67788999999975
No 277
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.59 E-value=1.4e+02 Score=21.81 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+.+.+.+.++.++....+|+++.
T Consensus 152 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 152 VLLLDEP--TSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4566776 48999999999999999986543434444444
No 278
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.53 E-value=1.5e+02 Score=21.62 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+.+.+.+.++..+....+|+++.
T Consensus 150 llllDEP--t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH 188 (235)
T cd03299 150 ILLLDEP--FSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188 (235)
T ss_pred EEEECCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4667777 48999999999999999986554445555554
No 279
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=30.35 E-value=1.7e+02 Score=20.29 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+++.+.+.++.+. . +.+++++
T Consensus 125 llllDEP--~~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 161 (182)
T cd03215 125 VLILDEP--TRGVDVGAKAEIYRLIRELADA-G-KAVLLIS 161 (182)
T ss_pred EEEECCC--CcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 4556666 4899999999999999998643 3 3444444
No 280
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.26 E-value=1.8e+02 Score=20.46 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDL 72 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl 72 (145)
.+-++.| .+.+|....+.+.+.+.++.++ . ..+++++....|-.-.|.
T Consensus 148 ~lilDEP--~~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 148 LWLLDEP--LVALDELSLLTIITKIQEHRAK-G-GAVLLTSHQDLPLNKADY 195 (200)
T ss_pred EEEEeCC--CcccCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCchhccccch
Confidence 4566777 4899999999999999998544 3 345555544444444443
No 281
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=30.21 E-value=48 Score=26.55 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhccCCCeeEEEEEcCCCc
Q 032207 37 MMADMAQAFKSLDKDESVLVIILSGSGRA 65 (145)
Q Consensus 37 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~ 65 (145)
..+++..+++.+.++|+++=|+|||+.+-
T Consensus 142 ~~~~~~~al~YIa~hPeI~eVllSGGDPL 170 (369)
T COG1509 142 NKEEWDKALDYIAAHPEIREVLLSGGDPL 170 (369)
T ss_pred CHHHHHHHHHHHHcCchhheEEecCCCcc
Confidence 56789999999999999999999996543
No 282
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=30.18 E-value=1.6e+02 Score=20.88 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+.+.+.+.++.++ ...+|+++.
T Consensus 157 llllDEP--t~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH 194 (214)
T cd03292 157 ILIADEP--TGNLDPDTTWEIMNLLKKINKA-GTTVVVATH 194 (214)
T ss_pred EEEEeCC--CCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 4566777 4899999999999999998644 334444443
No 283
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.18 E-value=1.4e+02 Score=22.45 Aligned_cols=40 Identities=5% Similarity=0.199 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .+.+|....++|.+.+.++.++....+|+++..
T Consensus 161 llllDEP--t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~ 200 (277)
T PRK13642 161 IIILDES--TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200 (277)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4566776 599999999999999999876434455555543
No 284
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=30.15 E-value=1.4e+02 Score=22.13 Aligned_cols=39 Identities=5% Similarity=0.125 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.||......+.+.+.++.++....+|+++.
T Consensus 136 llllDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 136 IYLLDEP--SAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566666 48999999999999999886544434444443
No 285
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=30.07 E-value=1.8e+02 Score=20.73 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.|. +.+|.....++.+.+.++.+ ...+|++|..
T Consensus 138 illlDEP~--~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~ 175 (197)
T cd03278 138 FCVLDEVD--AALDDANVERFARLLKEFSK--ETQFIVITHR 175 (197)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHhcc--CCEEEEEECC
Confidence 45677774 89999999999999999864 3455555543
No 286
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=30.00 E-value=91 Score=23.85 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
.+..-+++|.+.++... ++|||||+|
T Consensus 4 ~~~~~l~~l~~~i~~~~-----~ivvlTGAG 29 (285)
T PRK05333 4 ADPAALDALQDFVERHP-----RLFVLTGAG 29 (285)
T ss_pred ccHHHHHHHHHHHHhCC-----cEEEEeCCc
Confidence 46667777777776532 799999985
No 287
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=29.99 E-value=1.7e+02 Score=20.90 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.+. ...+++++.
T Consensus 170 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH 207 (224)
T TIGR02324 170 ILLLDEP--TASLDAANRQVVVELIAEAKAR-GAALIGIFH 207 (224)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 4566776 5899999999999999998643 444444444
No 288
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=29.90 E-value=1.5e+02 Score=21.52 Aligned_cols=39 Identities=10% Similarity=0.347 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|......+.+.+.++.++....+|+++.
T Consensus 150 lllLDEP--~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 150 ILLLDEP--FSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 4556777 48999999999999999886543434444443
No 289
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=29.80 E-value=1.9e+02 Score=23.70 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEE
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILS 60 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~ 60 (145)
--++++.+.+|.+.+.+.-++ ++..+|++
T Consensus 131 ~~mtp~~W~~La~~I~~~~~~-~~dGvVVt 159 (419)
T PRK04183 131 ENMTPEYWVEIAEAVYEEIKN-GADGVVVA 159 (419)
T ss_pred hhCCHHHHHHHHHHHHHHhhc-cCCeEEEe
Confidence 336777778888877775544 34555554
No 290
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=29.69 E-value=1.6e+02 Score=21.75 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+.+.+.+.++... ...+|+++.
T Consensus 159 llllDEP--~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH 196 (255)
T PRK11231 159 VVLLDEP--TTYLDINHQVELMRLMRELNTQ-GKTVVTVLH 196 (255)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 4566777 4899999999999999988643 334444444
No 291
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.63 E-value=3.3e+02 Score=22.63 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=48.2
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCc
Q 032207 20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRK 99 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~k 99 (145)
=+|.++... +-.++.++++|+.+.-+.+. |+=..+|+-+. .| .......+.+..-....-
T Consensus 184 DvvIvDTAG-Rl~ide~Lm~El~~Ik~~~~--P~E~llVvDam-----~G------------QdA~~~A~aF~e~l~itG 243 (451)
T COG0541 184 DVVIVDTAG-RLHIDEELMDELKEIKEVIN--PDETLLVVDAM-----IG------------QDAVNTAKAFNEALGITG 243 (451)
T ss_pred CEEEEeCCC-cccccHHHHHHHHHHHhhcC--CCeEEEEEecc-----cc------------hHHHHHHHHHhhhcCCce
Confidence 345566665 56779999999988888776 44345555442 11 111122333444446777
Q ss_pred cEEEeechhccHHhHH
Q 032207 100 PIIGAISGFAVTAGFE 115 (145)
Q Consensus 100 p~Ia~v~G~a~GgG~~ 115 (145)
.++.-++|.+.|||.-
T Consensus 244 vIlTKlDGdaRGGaAL 259 (451)
T COG0541 244 VILTKLDGDARGGAAL 259 (451)
T ss_pred EEEEcccCCCcchHHH
Confidence 8999999999999853
No 292
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=29.57 E-value=1.1e+02 Score=23.52 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
|-++|+ |+ |-.+ + .+...+.+-.+..||.+|+||+...
T Consensus 34 I~h~ty--Pd--nf~~-e-~EttIskI~~lAdDp~mKaIVv~q~ 71 (275)
T PF12683_consen 34 IKHVTY--PD--NFMS-E-QETTISKIVSLADDPDMKAIVVSQA 71 (275)
T ss_dssp EEEEE----T--TGGG-C-HHHHHHHHHGGGG-TTEEEEEEE-S
T ss_pred EEEEeC--CC--cccc-h-HHHHHHHHHHhccCCCccEEEEeCC
Confidence 555665 44 4333 2 3344444455566999999999875
No 293
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=29.40 E-value=1.8e+02 Score=20.55 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+++.+.+.++.++ ...+|+++-
T Consensus 146 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH 183 (201)
T cd03231 146 LWILDEP--TTALDKAGVARFAEAMAGHCAR-GGMVVLTTH 183 (201)
T ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 4667777 4899999999999999987644 334444444
No 294
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.36 E-value=1.5e+02 Score=22.28 Aligned_cols=40 Identities=8% Similarity=0.243 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.|-|+.| .+.+|.....+|.+.+.++.++....+|+++..
T Consensus 161 lllLDEP--t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 161 IIILDEA--TSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 4667777 489999999999999999876545555666544
No 295
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.34 E-value=1.4e+02 Score=22.56 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+.+.+.+.++.++....+|+++.
T Consensus 171 lLlLDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH 209 (289)
T PRK13645 171 TLVLDEP--TGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209 (289)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4567777 49999999999999999886543434444443
No 296
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=29.27 E-value=1.4e+02 Score=22.31 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .+.+|.....++.+.+.++.++....+|+++..
T Consensus 172 lllLDEP--t~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 172 LLILDEA--VSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred EEEEeCC--CcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 4567777 489999999999999998875444455555543
No 297
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.27 E-value=1.7e+02 Score=20.79 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+++.+.+.++.+. ...+++++.
T Consensus 148 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH 185 (207)
T PRK13539 148 IWILDEP--TAALDAAAVALFAELIRAHLAQ-GGIVIAATH 185 (207)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4566676 4899999999999999987644 434444444
No 298
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=29.16 E-value=1.3e+02 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCccccc
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G 69 (145)
.+...|=..+..++-.-..+|+.+||++.|.|..|..|
T Consensus 56 ~~~~~~G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig 93 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWANPKLTVIGYGGDGDGYGIG 93 (279)
T ss_pred CcccccccHHHHHHHHHHHCCCCcEEEEECChHHHHcc
Confidence 33444445555555555557889999999999877766
No 299
>PRK11186 carboxy-terminal protease; Provisional
Probab=29.15 E-value=1.2e+02 Score=26.48 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCC-CcccccCCchhh-hhhcc-cCcccHH--HH
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS--GSG-RAFCSGVDLTSA-EDVFK-GDVKDVE--TD 89 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g-~~F~~G~dl~~~-~~~~~-~~~~~~~--~~ 89 (145)
++|++|.+. .|+..+.+++.+++.++.+. .++.+||- +.| +....+.++..+ ..... -...... ..
T Consensus 353 ~kIGYI~I~------sF~~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~ 425 (667)
T PRK11186 353 EKVGVLDIP------GFYVGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVR 425 (667)
T ss_pred CcEEEEEec------ccccchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCcee
Confidence 468888873 46666778888888888754 57888884 443 444444443322 11000 0000000 00
Q ss_pred HH---HHHhcCCccEEEeechhccHHhHHHHHh
Q 032207 90 TV---AQMERCRKPIIGAISGFAVTAGFEIALA 119 (145)
Q Consensus 90 ~~---~~l~~~~kp~Ia~v~G~a~GgG~~l~l~ 119 (145)
.. ..-.....|++..+|+....++=.++.+
T Consensus 426 ~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~a 458 (667)
T PRK11186 426 VDSDTDGVVYYKGPLVVLVDRYSASASEIFAAA 458 (667)
T ss_pred ccccCCcccccCCCEEEEeCCCCccHHHHHHHH
Confidence 00 0112346799999999987776544443
No 300
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.11 E-value=1.8e+02 Score=20.41 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|.+....+.+.+.++.+. ...+++++..
T Consensus 129 vlllDEP--~~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~ 167 (192)
T cd03232 129 ILFLDEP--TSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQ 167 (192)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 4666777 4899999999999999998754 4445555543
No 301
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=29.04 E-value=1.7e+02 Score=21.63 Aligned_cols=38 Identities=8% Similarity=0.364 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.+. ...+++++.
T Consensus 173 llllDEP--t~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH 210 (257)
T PRK10619 173 VLLFDEP--TSALDPELVGEVLRIMQQLAEE-GKTMVVVTH 210 (257)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 4566777 5999999999999999998753 444555554
No 302
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=29.04 E-value=1.7e+02 Score=21.32 Aligned_cols=39 Identities=10% Similarity=0.333 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+.+.+.+.++..+....+|+++.
T Consensus 151 llllDEP--~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH 189 (237)
T TIGR00968 151 VLLLDEP--FGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189 (237)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566777 48999999999999999986543434444444
No 303
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=28.90 E-value=1.7e+02 Score=22.28 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=30.5
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 22 VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 22 i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
+.||-| .+.+|.....++.+.|+++.++ ...+++++-
T Consensus 161 llLDEP--~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtH 197 (254)
T COG1121 161 LLLDEP--FTGVDVAGQKEIYDLLKELRQE-GKTVLMVTH 197 (254)
T ss_pred EEecCC--cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 556666 5899999999999999999987 766777665
No 304
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.90 E-value=1.5e+02 Score=20.92 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+.+.+.+.++.++ . +.|++.+
T Consensus 149 ~lllDEP--~~~LD~~~~~~~~~~l~~~~~~-~-~tii~~s 185 (210)
T cd03269 149 LLILDEP--FSGLDPVNVELLKDVIRELARA-G-KTVILST 185 (210)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEC
Confidence 4567777 4899999999999999988643 3 3444444
No 305
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=28.89 E-value=1.7e+02 Score=21.04 Aligned_cols=62 Identities=5% Similarity=-0.011 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhccC-CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccH
Q 032207 35 RSMMADMAQAFKSLDKD-ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVT 111 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~-~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G 111 (145)
......+.++++.+.+. +++..||++|.= + .+.+ .+.+..+...+..+++|++...-.+=..
T Consensus 21 ~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl--~-~~~~------------~~~~~~~~~~l~~~~~p~~~v~GNHD~~ 83 (240)
T cd07402 21 VDTAASLEAVLAHINALHPRPDLVLVTGDL--T-DDGS------------PESYERLRELLAALPIPVYLLPGNHDDR 83 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEECccC--C-CCCC------------HHHHHHHHHHHhhcCCCEEEeCCCCCCH
Confidence 34455666666766654 456788888852 1 1111 1122334444555688877655445443
No 306
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=28.79 E-value=1.4e+02 Score=21.32 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
.+....+...| -+.+.++.+...++.+.. ....++||||+.
T Consensus 32 ~~~~~~h~~~~-~~~~~l~~~Y~~~~~i~~-~~yDGlIITGAp 72 (175)
T cd03131 32 FIRPSSHSSKN-TPPEHVNRFYETFDDIRD-AKFDGLIVTGAP 72 (175)
T ss_pred EEecCCCCCCC-CCHHHHHHhccCHHHccc-cCCCEEEEeCCC
Confidence 34444444345 378899999999999874 568999999986
No 307
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.71 E-value=1.5e+02 Score=22.42 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.++....+|++|.
T Consensus 165 llllDEP--t~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH 203 (287)
T PRK13637 165 ILILDEP--TAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203 (287)
T ss_pred EEEEECC--ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4667777 48999999999999999987654445555554
No 308
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=28.68 E-value=1.8e+02 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEEE-EcC
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVIIL-SGS 62 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl-~g~ 62 (145)
-++++.+.+|.+.+.+.-++. ...+|+ +|.
T Consensus 119 ~mtp~~w~~La~~I~~~~~~~-~dGvVVtHGT 149 (404)
T TIGR02153 119 NMKPEYWIKIAEAVAKALKEG-ADGVVVAHGT 149 (404)
T ss_pred hCCHHHHHHHHHHHHHHhhcC-CCcEEEecCC
Confidence 356677777777776655432 334444 444
No 309
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=28.59 E-value=41 Score=23.44 Aligned_cols=71 Identities=10% Similarity=0.229 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhccCCCeeEEEEEcC--CCcccccCCchhhhhhc---ccCcccHHHH--HHHHHhcCCccEEEeechh
Q 032207 38 MADMAQAFKSLDKDESVLVIILSGS--GRAFCSGVDLTSAEDVF---KGDVKDVETD--TVAQMERCRKPIIGAISGF 108 (145)
Q Consensus 38 ~~~l~~~l~~~~~~~~v~~vvl~g~--g~~F~~G~dl~~~~~~~---~~~~~~~~~~--~~~~l~~~~kp~Ia~v~G~ 108 (145)
+..|...+..+++||++.-|-+|-+ |-.-|+|+-+..-.... .....+..+. .+...++.|.+.++.-.|.
T Consensus 27 C~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~ 104 (172)
T COG4032 27 CDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGV 104 (172)
T ss_pred HHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccch
Confidence 4567788889999999998888865 45678998765311100 0111111121 2334456777777766664
No 310
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.56 E-value=2.7e+02 Score=23.02 Aligned_cols=79 Identities=13% Similarity=0.255 Sum_probs=52.2
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC-CCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-GRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME 95 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~ 95 (145)
+++=.|..+... +.--..++++|+.+.-+.+. |+--+.|+-+. |. ......+.+..-.
T Consensus 182 e~fdvIIvDTSG-Rh~qe~sLfeEM~~v~~ai~--Pd~vi~VmDasiGQ------------------aae~Qa~aFk~~v 240 (483)
T KOG0780|consen 182 ENFDVIIVDTSG-RHKQEASLFEEMKQVSKAIK--PDEIIFVMDASIGQ------------------AAEAQARAFKETV 240 (483)
T ss_pred cCCcEEEEeCCC-chhhhHHHHHHHHHHHhhcC--CCeEEEEEeccccH------------------hHHHHHHHHHHhh
Confidence 445556666665 56678899999998888887 55455555442 11 1122233455555
Q ss_pred cCCccEEEeechhccHHhHHH
Q 032207 96 RCRKPIIGAISGFAVTAGFEI 116 (145)
Q Consensus 96 ~~~kp~Ia~v~G~a~GgG~~l 116 (145)
...-.+|.-++|++-|||.--
T Consensus 241 dvg~vIlTKlDGhakGGgAlS 261 (483)
T KOG0780|consen 241 DVGAVILTKLDGHAKGGGALS 261 (483)
T ss_pred ccceEEEEecccCCCCCceee
Confidence 677889999999999999643
No 311
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=28.53 E-value=1.1e+02 Score=19.66 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+.++++-+.+.++.+.++++..+-|+.|.
T Consensus 2 YS~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~ 31 (103)
T PF06935_consen 2 YSPEFVENMKKIVERLRNDPGEPIEIVDGP 31 (103)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECc
Confidence 478899999999999987787788888775
No 312
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=28.21 E-value=45 Score=25.04 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchh
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS 74 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~ 74 (145)
.+|-++.=|-..+.|.+.. .+++|...+..++..+.++|.+=| -..|.+|.|+..
T Consensus 138 k~V~ivlEnMAGqGn~vG~-tfeelk~ii~~Ikdk~RigVClDT--CH~FaaGyDI~T 192 (281)
T KOG3997|consen 138 KNVIIVLENMAGQGNSVGG-TFEELKFIIGKIKDKSRIGVCLDT--CHTFAAGYDIRT 192 (281)
T ss_pred cceEEEeecccCCCCcccc-cHHHHHHHHHhhcchhhheeeHhh--hhhhccccccch
Confidence 5677777777888899884 457899999999876666655433 367999999864
No 313
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=28.07 E-value=1.9e+02 Score=20.27 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| .+.+|......+.+.+.++.++ ...+++++..
T Consensus 148 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~ 186 (198)
T TIGR01189 148 LWILDEP--TTALDKAGVALLAGLLRAHLAR-GGIVLLTTHQ 186 (198)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEcc
Confidence 4667777 4899999999999999988544 3345555543
No 314
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.95 E-value=1.6e+02 Score=22.06 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|.....++.+.+.++.++....+|++|.
T Consensus 158 llilDEP--t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 196 (277)
T PRK13652 158 VLVLDEP--TAGLDPQGVKELIDFLNDLPETYGMTVIFSTH 196 (277)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4667777 48999999999999999987653444455444
No 315
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=27.77 E-value=1.9e+02 Score=20.57 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+++.+.+.++.++ ...+|+++.
T Consensus 157 illlDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH 194 (218)
T cd03266 157 VLLLDEP--TTGLDVMATRALREFIRQLRAL-GKCILFSTH 194 (218)
T ss_pred EEEEcCC--CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4667777 4899999999999999998643 334444443
No 316
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=27.75 E-value=2e+02 Score=20.54 Aligned_cols=38 Identities=5% Similarity=0.083 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|.+..+.+.+.+.++.++ ...+|+++.
T Consensus 158 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH 195 (214)
T PRK13543 158 LWLLDEP--YANLDLEGITLVNRMISAHLRG-GGAALVTTH 195 (214)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 4566777 4999999999999999988654 334444444
No 317
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=27.74 E-value=1.5e+02 Score=23.33 Aligned_cols=40 Identities=5% Similarity=0.249 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-+|.| .+++|+....++.+.+.++.++....+|++|..
T Consensus 161 iLLlDEP--ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 161 VLLCDEA--TSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3455666 599999999999999999986656667777654
No 318
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=27.62 E-value=1.9e+02 Score=22.41 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.-++++.+.+|.+.+++.-++ +..+|++.
T Consensus 52 ~~~t~~~~~~la~~i~~~~~~--~~GvVVtH 80 (313)
T PF00710_consen 52 SDMTPEDWLELARAIQAALDD--YDGVVVTH 80 (313)
T ss_dssp GG--HHHHHHHHHHHHHHHTT--CSEEEEE-
T ss_pred hhcCHHHHHHHHHHHHHHHHh--cCeEEEec
Confidence 448999999999999998833 66666654
No 319
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=27.55 E-value=1.6e+02 Score=21.29 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.++....+++++.
T Consensus 146 vllLDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 184 (230)
T TIGR02770 146 FLIADEP--TTDLDVVNQARVLKLLRELRQLFGTGILLITH 184 (230)
T ss_pred EEEEcCC--ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4666777 48999999999999999886543433444443
No 320
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=27.51 E-value=2e+02 Score=20.58 Aligned_cols=41 Identities=10% Similarity=0.349 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCCCCCHHHHH-HHHHHHHhhccCCCeeEEEEEcC
Q 032207 20 AYVTINRPKSLNSLTRSMMA-DMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~-~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
-.+-++.|. +.+|..... .+.+.+.++.++....+++++..
T Consensus 141 ~illlDEP~--~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 141 GILALDEPT--TNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred CEEEEcCCc--cccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 356677774 889999999 99999998875434445555543
No 321
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=27.47 E-value=81 Score=23.22 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
.++.+.|..+.+++.+.++|+||..
T Consensus 28 ~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 28 DRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4556666777778888888999974
No 322
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.46 E-value=1.6e+02 Score=22.18 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....++.+.+.++.++....+|+++.
T Consensus 162 lLilDEP--t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH 200 (283)
T PRK13636 162 VLVLDEP--TAGLDPMGVSEIMKLLVEMQKELGLTIIIATH 200 (283)
T ss_pred EEEEeCC--ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4566777 48999999999999999987643444555544
No 323
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=27.41 E-value=2.3e+02 Score=20.05 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCccEEEeechhccHHhHHHHH-----hcCEEEEeCC
Q 032207 87 ETDTVAQMERCRKPIIGAISGFAVTAGFEIAL-----ACDVLVAAKG 128 (145)
Q Consensus 87 ~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l-----~~D~~ia~~~ 128 (145)
+.+....+.+....+.+.+...=.---+.=.+ .||.+|+.++
T Consensus 48 ~~~~~~aia~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~~s 94 (164)
T PF11965_consen 48 LEECEAAIARADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIFES 94 (164)
T ss_pred HHHHHHHHHhCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEEcC
Confidence 34444455555555555554332222222111 3666666555
No 324
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=27.41 E-value=1.4e+02 Score=17.79 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=26.6
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-Ccc
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAF 66 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F 66 (145)
+++..+.+..+ ++..-..++.+.+.....++ .+.+++--.+ +.+
T Consensus 7 ~~~~ii~l~G~-----l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~i 51 (99)
T cd07043 7 GGVLVVRLSGE-----LDAATAPELREALEELLAEG-PRRLVLDLSGVTFI 51 (99)
T ss_pred CCEEEEEEece-----ecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEE
Confidence 67888888654 34444556666655554333 5777777655 443
No 325
>PRK14558 pyrH uridylate kinase; Provisional
Probab=27.39 E-value=1.1e+02 Score=22.44 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~ 64 (145)
-.++.+.++.+.+.+.++.+. ..++++++|.|.
T Consensus 18 ~~~~~~~i~~la~~i~~~~~~-g~~viiV~GgGs 50 (231)
T PRK14558 18 KGFDPERVNYLVNEIKSVVEY-GFKIGIVIGAGN 50 (231)
T ss_pred CCcCHHHHHHHHHHHHHHHHC-CCeEEEEECccH
Confidence 358999999999999988643 468999987764
No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.38 E-value=2e+02 Score=19.31 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=25.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~ 60 (145)
.+-++.| .+.+|.....++.+.+.++... ...+++++
T Consensus 101 i~ilDEp--~~~lD~~~~~~l~~~l~~~~~~-~~tii~~s 137 (157)
T cd00267 101 LLLLDEP--TSGLDPASRERLLELLRELAEE-GRTVIIVT 137 (157)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEe
Confidence 4556666 4889999999999999887654 33334333
No 327
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=27.35 E-value=1.9e+02 Score=21.04 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+.+.+.+.++.+. . +.|++++
T Consensus 166 illLDEP--t~~LD~~~~~~l~~~l~~l~~~-~-~tiii~s 202 (248)
T PRK09580 166 LCILDES--DSGLDIDALKIVADGVNSLRDG-K-RSFIIVT 202 (248)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHhC-C-CEEEEEe
Confidence 3556676 5899999999999999888643 3 3444444
No 328
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=27.31 E-value=52 Score=23.11 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhhccC-----CCeeEEEEEcCCCcccccCCch
Q 032207 34 TRSMMADMAQAFKSLDKD-----ESVLVIILSGSGRAFCSGVDLT 73 (145)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~-----~~v~~vvl~g~g~~F~~G~dl~ 73 (145)
-++.++++.++++++.++ -+..-|+|.| .|+|+.+.
T Consensus 45 ~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G----~SAGg~la 85 (211)
T PF07859_consen 45 FPAALEDVKAAYRWLLKNADKLGIDPERIVLIG----DSAGGHLA 85 (211)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEE----ETHHHHHH
T ss_pred ccccccccccceeeeccccccccccccceEEee----cccccchh
Confidence 358889999999999877 5566777777 56665543
No 329
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=27.28 E-value=1.7e+02 Score=21.66 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.++....+|+++.
T Consensus 141 lllLDEP--t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH 179 (251)
T PRK09544 141 LLVLDEP--TQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179 (251)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4667777 48999999999999999886543434444443
No 330
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=27.28 E-value=1.8e+02 Score=21.41 Aligned_cols=39 Identities=10% Similarity=0.295 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.++....+++++.
T Consensus 161 lLlLDEP--t~~LD~~~~~~l~~~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 161 FIIADEP--TTDLDVVAQARILDLLESIVQKRALGMLLVTH 199 (254)
T ss_pred EEEEeCC--CcccCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 5667777 48899999999999999886544444555554
No 331
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=27.26 E-value=34 Score=25.07 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=35.8
Q ss_pred CCcEEEEEcCC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhcc
Q 032207 7 ENLILVTRDPM-GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDK 50 (145)
Q Consensus 7 ~~~i~~~~~~~-~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~ 50 (145)
++.+.++++++ +|..+.+|... .|.+-.+...+..+.|++++.
T Consensus 64 ~dlI~i~kd~~G~I~~iq~nT~~-~N~i~s~~~~~vq~~L~~l~~ 107 (204)
T TIGR02832 64 NDLIEIETDENGKITLIQANTLL-LNKLASNITLRVQEKLNELGE 107 (204)
T ss_pred HHEEEEEECCCCcEEEEEcCHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 45677777654 59999998875 999999999999999999985
No 332
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=27.26 E-value=1.8e+02 Score=20.58 Aligned_cols=37 Identities=16% Similarity=0.410 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+++.+.+.++.+. . +.+++.+
T Consensus 147 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~-~tii~~t 183 (208)
T cd03268 147 LLILDEP--TNGLDPDGIKELRELILSLRDQ-G-ITVLISS 183 (208)
T ss_pred EEEECCC--cccCCHHHHHHHHHHHHHHHHC-C-CEEEEEc
Confidence 4667777 4899999999999999988753 3 3444444
No 333
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=27.24 E-value=2e+02 Score=20.46 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-+|.| .+.+|....+++.+.+.++.+ + +.|++.+.
T Consensus 154 llllDEP--~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH 190 (220)
T cd03263 154 VLLLDEP--TSGLDPASRRAIWDLILEVRK--G-RSIILTTH 190 (220)
T ss_pred EEEECCC--CCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcC
Confidence 4567777 489999999999999999875 3 45555553
No 334
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=27.23 E-value=1.9e+02 Score=21.28 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~ 60 (145)
.+-++.| .+.+|.....++.+.+.++.++ ...+|+++
T Consensus 154 llllDEP--t~~LD~~~~~~l~~~L~~~~~~-~~tvi~~s 190 (248)
T PRK03695 154 LLLLDEP--MNSLDVAQQAALDRLLSELCQQ-GIAVVMSS 190 (248)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 5667777 4999999999999999998644 33344444
No 335
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=27.20 E-value=1.6e+02 Score=21.75 Aligned_cols=39 Identities=13% Similarity=0.324 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE
Q 032207 20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~ 60 (145)
-.+-|+.| .+.+|......+.+.+.++.++....+|+++
T Consensus 160 ~lllLDEP--t~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 198 (258)
T PRK13548 160 RWLLLDEP--TSALDLAHQHHVLRLARQLAHERGLAVIVVL 198 (258)
T ss_pred CEEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35677777 4899999999999999998633333344444
No 336
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=27.13 E-value=1.9e+02 Score=20.88 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|......+.+.+.++.+. ...+++++.
T Consensus 165 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH 202 (243)
T TIGR01978 165 LAILDEI--DSGLDIDALKIVAEGINRLREP-DRSFLIITH 202 (243)
T ss_pred EEEecCC--cccCCHHHHHHHHHHHHHHHHC-CcEEEEEEe
Confidence 4566666 4899999999999999988643 333444443
No 337
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=26.86 E-value=2.1e+02 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
-.+-++.|- +.+|....+.+.+.+.++.++ ...+++++.
T Consensus 153 ~~lllDEp~--~~lD~~~~~~~~~~l~~~~~~-~~tii~itH 191 (213)
T cd03279 153 EALFIDEGF--GTLDPEALEAVATALELIRTE-NRMVGVISH 191 (213)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 356677774 899999999999999988644 445555554
No 338
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=26.71 E-value=49 Score=28.15 Aligned_cols=32 Identities=22% Similarity=0.690 Sum_probs=27.8
Q ss_pred CccEEEeechhccHH-hHHHHHhcCEEEEeCCc
Q 032207 98 RKPIIGAISGFAVTA-GFEIALACDVLVAAKGA 129 (145)
Q Consensus 98 ~kp~Ia~v~G~a~Gg-G~~l~l~~D~~ia~~~a 129 (145)
..-+|+.|+|+.+-- ||.|...|+++||++.-
T Consensus 350 g~r~vsvigg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 350 GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred cceEEEEecccchhhhhhhhhccceeeecCchH
Confidence 467899999998875 89999999999999764
No 339
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.64 E-value=1.8e+02 Score=21.73 Aligned_cols=39 Identities=8% Similarity=0.254 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+++.+.+.++.++....+++++.
T Consensus 181 illLDEP--t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH 219 (269)
T cd03294 181 ILLMDEA--FSALDPLIRREMQDELLRLQAELQKTIVFITH 219 (269)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566777 48999999999999999886543444444443
No 340
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=26.59 E-value=1.8e+02 Score=20.86 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|.+...++.+.+.++.++....+|+++.
T Consensus 162 illlDEP--~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh 200 (220)
T TIGR02982 162 LVLADEP--TAALDSKSGRDVVELMQKLAREQGCTILIVTH 200 (220)
T ss_pred EEEEeCC--CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4566776 48899999999999999987544434444443
No 341
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.50 E-value=2.1e+02 Score=20.24 Aligned_cols=38 Identities=11% Similarity=0.276 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+++.+.+.++.+. ...+++++.
T Consensus 150 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh 187 (204)
T PRK13538 150 LWILDEP--FTAIDKQGVARLEALLAQHAEQ-GGMVILTTH 187 (204)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHC-CCEEEEEec
Confidence 4566777 4899999999999999988643 334444443
No 342
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=26.41 E-value=1.9e+02 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|.....++.+.+.++.++ +.|++++.
T Consensus 161 llllDEP--t~~LD~~~~~~l~~~l~~~~~~---~tii~~sH 197 (220)
T cd03245 161 ILLLDEP--TSAMDMNSEERLKERLRQLLGD---KTLIIITH 197 (220)
T ss_pred EEEEeCc--cccCCHHHHHHHHHHHHHhcCC---CEEEEEeC
Confidence 4566777 4899999999999999998653 45555543
No 343
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=1.4e+02 Score=20.13 Aligned_cols=35 Identities=14% Similarity=0.532 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEEcC-----CCcccc
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILSGS-----GRAFCS 68 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-----g~~F~~ 68 (145)
......++|.+.++..++... -.|.++|. |+.||-
T Consensus 7 ~~~~g~e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCP 46 (128)
T KOG3425|consen 7 VLLPGYESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCP 46 (128)
T ss_pred cccchHHHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCc
Confidence 455678899999999987776 55556654 466664
No 344
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=26.32 E-value=2e+02 Score=20.85 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.+. . +.|++++
T Consensus 158 illlDEP--t~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 194 (237)
T PRK11614 158 LLLLDEP--SLGLAPIIIQQIFDTIEQLREQ-G-MTIFLVE 194 (237)
T ss_pred EEEEcCc--cccCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 4566777 4899999999999999998654 3 3444444
No 345
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=26.26 E-value=1.8e+02 Score=22.56 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhccCCCeeEEEEEcCCCccccc
Q 032207 36 SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69 (145)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G 69 (145)
.|=..+-.++-....+|+.++|+++|.|..|.-|
T Consensus 71 ~mG~alpaAiGaklA~pd~~VV~i~GDG~~~~mg 104 (301)
T PRK05778 71 LHGRAIAFATGAKLANPDLEVIVVGGDGDLASIG 104 (301)
T ss_pred hhccHHHHHHHHHHHCCCCcEEEEeCccHHHhcc
Confidence 3334555555555557888999999999877544
No 346
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=26.24 E-value=1.7e+02 Score=22.35 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=33.9
Q ss_pred CcEEEEEEcCCCCCCCC-CHHHHHHHHHHHHhhccCCCeeEEEEEcCCC
Q 032207 17 MGIAYVTINRPKSLNSL-TRSMMADMAQAFKSLDKDESVLVIILSGSGR 64 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l-~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~ 64 (145)
...++|++. .|++ +.+.++.|.+.+..+..- .++.|++.|.|+
T Consensus 35 ~~f~VIK~G----G~~~~~~~~~~~l~~dla~L~~l-Gl~~VlVHGggp 78 (271)
T cd04236 35 PAFAVLEVD----HSVFRSLEMVQSLSFGLAFLQRM-DMKLLVVMGLSA 78 (271)
T ss_pred CCEEEEEEC----hhhhcCchhHHHHHHHHHHHHHC-CCeEEEEeCCCh
Confidence 457777773 4677 588899999999999754 689999999874
No 347
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=26.21 E-value=1.7e+02 Score=21.69 Aligned_cols=39 Identities=8% Similarity=0.246 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.++....+|+++.
T Consensus 171 illLDEP--t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 171 LIVLDEA--VSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 4556676 48999999999999999887543434444443
No 348
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.17 E-value=1.9e+02 Score=21.44 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....++.+.+.++.......+++++.
T Consensus 171 vllLDEP--~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH 209 (261)
T PRK14258 171 VLLMDEP--CFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209 (261)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 4566776 48899999999999999876433433444443
No 349
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=26.16 E-value=2.1e+02 Score=20.40 Aligned_cols=37 Identities=16% Similarity=0.448 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.+. . +.|++++
T Consensus 153 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 189 (222)
T cd03224 153 LLLLDEP--SEGLAPKIVEEIFEAIRELRDE-G-VTILLVE 189 (222)
T ss_pred EEEECCC--cccCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 4566676 4899999999999999988653 3 3444444
No 350
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.11 E-value=2.4e+02 Score=21.04 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+.|+-| ...+|+...+++.+.+.++..+....+|++|..
T Consensus 159 iliLDEP--ta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd 198 (235)
T COG1122 159 ILLLDEP--TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198 (235)
T ss_pred EEEEcCC--CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 3566666 478999999999999999998766667777763
No 351
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=25.96 E-value=2.1e+02 Score=20.64 Aligned_cols=38 Identities=13% Similarity=0.378 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.+ ....+|+++.
T Consensus 164 llllDEP--t~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH 201 (236)
T cd03219 164 LLLLDEP--AAGLNPEETEELAELIRELRE-RGITVLLVEH 201 (236)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 4566776 489999999999999998865 3333444443
No 352
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=25.87 E-value=2.1e+02 Score=20.30 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....++.+.+.++.+. ...++++|.
T Consensus 158 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH 195 (214)
T TIGR02673 158 LLLADEP--TGNLDPDLSERILDLLKRLNKR-GTTVIVATH 195 (214)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 3566776 4899999999999999998643 334444444
No 353
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=25.80 E-value=1.7e+02 Score=22.87 Aligned_cols=40 Identities=15% Similarity=0.397 Sum_probs=30.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.|.+|.| .++||.....++.+.+.++.++....+|++|..
T Consensus 182 llilDEP--ts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 182 LIICDEP--VSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4556666 489999999999999999976545566666653
No 354
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=25.76 E-value=1.6e+02 Score=23.24 Aligned_cols=40 Identities=13% Similarity=0.336 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .+.+|.....++.+.+..+.++....+|++|..
T Consensus 157 lLLLDEP--~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 157 VLLFDEP--LSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3556666 589999999999999999976655666666653
No 355
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.71 E-value=1.8e+02 Score=21.88 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|......|.+.+.++.++....+|+++.
T Consensus 164 llllDEP--t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 164 IIILDES--TSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred EEEEECC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4566777 48999999999999999987554445555554
No 356
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=25.65 E-value=85 Score=24.02 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=33.6
Q ss_pred chhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCCC
Q 032207 106 SGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS 145 (145)
Q Consensus 106 ~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~s 145 (145)
+......+..+.-..++-+..|+..+.+|..++-+.++||
T Consensus 137 q~~~s~~a~~~L~~~Gipv~reG~~i~lp~~~l~Va~aCS 176 (268)
T TIGR03113 137 KQAVSYVAEQILYWAGYPIARSGVILQVGQYQLLVADACA 176 (268)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeeeEEEECCeeEEEeccCC
Confidence 3444455666777889999999999999999999999998
No 357
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=25.56 E-value=2.1e+02 Score=20.86 Aligned_cols=38 Identities=11% Similarity=0.391 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.++ ...+|+++.
T Consensus 165 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH 202 (250)
T PRK11264 165 VILFDEP--TSALDPELVGEVLNTIRQLAQE-KRTMVIVTH 202 (250)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 4566777 4899999999999999988754 334444443
No 358
>PRK12404 stage V sporulation protein AD; Provisional
Probab=25.54 E-value=56 Score=25.90 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=35.6
Q ss_pred CCccEEEeechhccHHhHHHHHh--------cCEEEEeCCcEEeccceeeeecC
Q 032207 97 CRKPIIGAISGFAVTAGFEIALA--------CDVLVAAKGAKFIDTHARLVCKI 142 (145)
Q Consensus 97 ~~kp~Ia~v~G~a~GgG~~l~l~--------~D~~ia~~~a~f~~pe~~~G~~~ 142 (145)
+.+|. --++|.|.+++..|.++ +|++++..++-|+-.|-++=+|.
T Consensus 98 LGIP~-~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErqfR~P~ 150 (334)
T PRK12404 98 LGIPY-LGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQFRYPT 150 (334)
T ss_pred hCCCc-cceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhhccCcc
Confidence 33665 57889999998888776 89999988888888887776653
No 359
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=25.53 E-value=1.2e+02 Score=21.49 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHHHHHhcCC--ccEEEeechhccHHhHHHHHhcCE
Q 032207 89 DTVAQMERCR--KPIIGAISGFAVTAGFEIALACDV 122 (145)
Q Consensus 89 ~~~~~l~~~~--kp~Ia~v~G~a~GgG~~l~l~~D~ 122 (145)
..+..+...+ .+--..+-|.|.||.+.+.+++..
T Consensus 84 aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 84 AAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 4455666666 334445559999999999988764
No 360
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=25.42 E-value=86 Score=23.91 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=36.7
Q ss_pred eechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCCC
Q 032207 104 AISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS 145 (145)
Q Consensus 104 ~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~s 145 (145)
-.+..+......+.-..++-+..|+..+..|..++.+.++||
T Consensus 137 pLq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va~aCS 178 (267)
T TIGR03109 137 PLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACS 178 (267)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEeCCCC
Confidence 356667777777888889999999999999999999999998
No 361
>smart00245 TSPc tail specific protease. tail specific protease
Probab=25.42 E-value=1.4e+02 Score=21.09 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCC-CcccccCCchh-hhhhccc--CcccH-HHH
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS--GSG-RAFCSGVDLTS-AEDVFKG--DVKDV-ETD 89 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g-~~F~~G~dl~~-~~~~~~~--~~~~~-~~~ 89 (145)
++|+.|.++ .|+....+++.++++.+.+. .++.+||- +.+ +......++-. +...... ..... ...
T Consensus 28 ~~igYi~i~------~f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (192)
T smart00245 28 GNIGYIRIP------EFSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGEL 100 (192)
T ss_pred CcEEEEEEe------EEChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCce
Confidence 468888774 35666788889999999855 57888874 432 22222222211 1110000 00000 000
Q ss_pred --H-HHHHhcCCccEEEeechhccHHhHHHHHh
Q 032207 90 --T-VAQMERCRKPIIGAISGFAVTAGFEIALA 119 (145)
Q Consensus 90 --~-~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~ 119 (145)
. ...-....+|++..+++.+..++=.++.+
T Consensus 101 ~~~~~~~~~~~~~pv~vL~~~~TaSaaE~~a~~ 133 (192)
T smart00245 101 ETYPANLGRKYSKPLVVLVNEGTASASEIFAGA 133 (192)
T ss_pred EEEecCCCcccCCCEEEEECCCCeeHHHHHHHH
Confidence 0 00011236999999999998888555554
No 362
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.33 E-value=1.9e+02 Score=21.74 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|.....++.+.+.++.++....+++++..
T Consensus 161 lLlLDEP--t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 161 IIILDEA--TSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred EEEEECC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4667777 489999999999999999976545556666554
No 363
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=25.31 E-value=2.2e+02 Score=20.41 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.++ +.|++++
T Consensus 162 llllDEP--t~~LD~~~~~~l~~~l~~~~~~---~tii~~s 197 (227)
T cd03260 162 VLLLDEP--TSALDPISTAKIEELIAELKKE---YTIVIVT 197 (227)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHhhC---cEEEEEe
Confidence 4556666 4899999999999999998654 4455544
No 364
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=25.24 E-value=1.4e+02 Score=23.75 Aligned_cols=38 Identities=11% Similarity=0.334 Sum_probs=31.5
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 22 VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 22 i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
+-|+.| .++||..+..+|.+-|.++.+.-.+..|.+|-
T Consensus 159 LLLDEP--f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 159 LLLDEP--FGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred EeecCC--chhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 456666 69999999999999999999877777777765
No 365
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=25.16 E-value=2.2e+02 Score=20.55 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|....+++.+.+.++.+. .. .|++++
T Consensus 163 llllDEP--~~gLD~~~~~~~~~~l~~~~~~-~~-tiii~s 199 (224)
T cd03220 163 ILLIDEV--LAVGDAAFQEKCQRRLRELLKQ-GK-TVILVS 199 (224)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHhC-CC-EEEEEe
Confidence 4667777 4889999999999999888654 33 444444
No 366
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=25.07 E-value=1.9e+02 Score=22.74 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|....+++.+.+.++.++....++++|.
T Consensus 152 lllLDEP--ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH 190 (354)
T TIGR02142 152 LLLMDEP--LAALDDPRKYEILPYLERLHAEFGIPILYVSH 190 (354)
T ss_pred EEEEcCC--CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4567777 58999999999999999987654445555554
No 367
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=25.02 E-value=2.8e+02 Score=20.23 Aligned_cols=32 Identities=3% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCCCC---HHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 29 SLNSLT---RSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 29 ~~N~l~---~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
+.|.+. .+.++++.+.++.+.. +..+|+++|.
T Consensus 16 ~~~~~g~~~~~~~~~i~~~~~~~~~--~~D~viiaGD 50 (232)
T cd07393 16 PMDVFGPEWKNHTEKIKENWDNVVA--PEDIVLIPGD 50 (232)
T ss_pred CCcccCccHHHHHHHHHHHHHhcCC--CCCEEEEcCC
Confidence 357777 5888888888888873 4678999885
No 368
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=24.95 E-value=3.2e+02 Score=21.18 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC
Q 032207 7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64 (145)
Q Consensus 7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~ 64 (145)
..++.++.+ ++-.++.+..+++.+...+ -++.|...+...-. +..-+|+|+|.|.
T Consensus 240 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~p-~id~~f~s~a~~~~-~~~~~vilsG~g~ 294 (354)
T PRK00742 240 GKHMMVARS-GANYRIKLDDGPPVNRHRP-SVDVLFRSAAKAAG-RNALGVILTGMGR 294 (354)
T ss_pred CCEEEEEec-CCceEEEECCCCCcCCCCC-CHHHHHHHHHHHhC-CCEEEEECCcCCh
Confidence 455666553 4445666666655555553 33344443333332 3567899999874
No 369
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=24.81 E-value=1.7e+02 Score=21.63 Aligned_cols=39 Identities=13% Similarity=0.374 Sum_probs=32.9
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 22 VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 22 i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
+-|+.| .-++|+.+-.|+...+.++..+....++.+|-.
T Consensus 151 lLLDEP--FsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~ 189 (231)
T COG3840 151 LLLDEP--FSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189 (231)
T ss_pred EEecCc--hhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 445555 689999999999999999998888888888864
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=24.77 E-value=2.4e+02 Score=19.83 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.+..+.+.+.+.++.+ ....+|+++.
T Consensus 110 llLlDEP--t~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH 147 (176)
T cd03238 110 LFILDEP--STGLHQQDINQLLEVIKGLID-LGNTVILIEH 147 (176)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 4556666 488999999999999998864 3444444444
No 371
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.75 E-value=2.1e+02 Score=20.20 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+.+.+.+.++.+ . +.+++.+
T Consensus 151 llllDEP--t~~LD~~~~~~l~~~l~~~~~--~-~tii~vs 186 (211)
T cd03264 151 ILIVDEP--TAGLDPEERIRFRNLLSELGE--D-RIVILST 186 (211)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHhC--C-CEEEEEc
Confidence 3556777 489999999999999999875 2 3454444
No 372
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.71 E-value=2.1e+02 Score=21.39 Aligned_cols=38 Identities=13% Similarity=0.373 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.+. ...+|+++.
T Consensus 166 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH 203 (280)
T PRK13649 166 ILVLDEP--TAGLDPKGRKELMTLFKKLHQS-GMTIVLVTH 203 (280)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHC-CCEEEEEec
Confidence 4566777 4899999999999999988643 334444443
No 373
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=24.71 E-value=2.3e+02 Score=20.00 Aligned_cols=38 Identities=11% Similarity=0.411 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.+. ...+++++.
T Consensus 156 llllDEP--~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh 193 (213)
T cd03262 156 VMLFDEP--TSALDPELVGEVLDVMKDLAEE-GMTMVVVTH 193 (213)
T ss_pred EEEEeCC--ccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 4566666 4899999999999999998753 333444443
No 374
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=24.71 E-value=2.2e+02 Score=20.36 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|....+++.+.+.++.+. . +.+++++.
T Consensus 145 llllDEP--~~~LD~~~~~~l~~~L~~~~~~-~-~tiii~sH 182 (223)
T TIGR03740 145 LLILDEP--TNGLDPIGIQELRELIRSFPEQ-G-ITVILSSH 182 (223)
T ss_pred EEEECCC--ccCCCHHHHHHHHHHHHHHHHC-C-CEEEEEcC
Confidence 4667777 4899999999999999998643 3 34444443
No 375
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=24.69 E-value=1.8e+02 Score=22.64 Aligned_cols=40 Identities=13% Similarity=0.340 Sum_probs=30.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.|.+|.| .++||.....++.+.|.++.++....+|++|..
T Consensus 182 llilDEP--ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 221 (330)
T PRK09473 182 LLIADEP--TTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221 (330)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3556666 489999999999999999976555566666653
No 376
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.58 E-value=2.2e+02 Score=20.51 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....++.+.+.++.+ ...+++++.
T Consensus 158 llllDEP--~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh 194 (236)
T cd03253 158 ILLLDEA--TSALDTHTEREIQAALRDVSK--GRTTIVIAH 194 (236)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHhcC--CCEEEEEcC
Confidence 4667777 489999999999999998864 434444443
No 377
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=24.54 E-value=2.3e+02 Score=20.35 Aligned_cols=38 Identities=16% Similarity=0.373 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+++.+.+.++.+. ...+|+++.
T Consensus 154 llllDEP--t~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH 191 (232)
T cd03218 154 FLLLDEP--FAGVDPIAVQDIQKIIKILKDR-GIGVLITDH 191 (232)
T ss_pred EEEecCC--cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4567777 4899999999999999988653 333444443
No 378
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=24.48 E-value=2.2e+02 Score=21.28 Aligned_cols=38 Identities=8% Similarity=0.277 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|......+.+.+.++.+. ...+++++.
T Consensus 163 llllDEP--t~~LD~~~~~~l~~~L~~~~~~-g~tviivsH 200 (272)
T PRK15056 163 VILLDEP--FTGVDVKTEARIISLLRELRDE-GKTMLVSTH 200 (272)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 4566676 4999999999999999988643 334444444
No 379
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=24.46 E-value=1.9e+02 Score=22.41 Aligned_cols=39 Identities=13% Similarity=0.410 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.++....++++|.
T Consensus 121 lllLDEP--~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 121 ILLLDEP--LSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566776 58999999999999999987654445555554
No 380
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=24.40 E-value=1.3e+02 Score=19.94 Aligned_cols=31 Identities=16% Similarity=0.579 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhccCCCeeEEEEEcC----CCcccc
Q 032207 38 MADMAQAFKSLDKDESVLVIILSGS----GRAFCS 68 (145)
Q Consensus 38 ~~~l~~~l~~~~~~~~v~~vvl~g~----g~~F~~ 68 (145)
++++.+.++...++...-.|+++|. |+.||.
T Consensus 5 y~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCP 39 (119)
T PF06110_consen 5 YDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCP 39 (119)
T ss_dssp HHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSH
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccH
Confidence 5677888888776667677777875 455654
No 381
>PRK05665 amidotransferase; Provisional
Probab=24.38 E-value=1.7e+02 Score=21.84 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=17.1
Q ss_pred cHHHHHHHHHhcCCccEEEeechh
Q 032207 85 DVETDTVAQMERCRKPIIGAISGF 108 (145)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Ia~v~G~ 108 (145)
..+.++++......+|++..+-|+
T Consensus 78 ~~l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 78 QTLKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEeHHH
Confidence 345666777777789999777666
No 382
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=24.38 E-value=2.5e+02 Score=19.84 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+++.+.+.++.++ . +.+++.+
T Consensus 125 illlDEP--t~~LD~~~~~~l~~~L~~~~~~-~-~tiii~s 161 (200)
T cd03217 125 LAILDEP--DSGLDIDALRLVAEVINKLREE-G-KSVLIIT 161 (200)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 4566777 4899999999999999988643 3 4455544
No 383
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.37 E-value=97 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=22.8
Q ss_pred HHHHHhcCC--ccEEEeechhccHHhHHHHHhcCE
Q 032207 90 TVAQMERCR--KPIIGAISGFAVTAGFEIALACDV 122 (145)
Q Consensus 90 ~~~~l~~~~--kp~Ia~v~G~a~GgG~~l~l~~D~ 122 (145)
....+...+ .+.=..+-|.|+||++.+..++..
T Consensus 99 ~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 99 ALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 344455555 333344559999999999999887
No 384
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=24.26 E-value=2.4e+02 Score=20.86 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.9
Q ss_pred CCCCcEEEEEcCCcEEEEEEcCCCC
Q 032207 5 KSENLILVTRDPMGIAYVTINRPKS 29 (145)
Q Consensus 5 ~~~~~i~~~~~~~~v~~i~l~~~~~ 29 (145)
...++|.+....|++.+|.|||...
T Consensus 71 ~~kQFiTv~Tk~gn~FyliIDr~~~ 95 (218)
T PF14283_consen 71 DGKQFITVTTKSGNTFYLIIDRDEE 95 (218)
T ss_pred CCcEEEEEEecCCCEEEEEEecCCC
Confidence 3457899999888899999999863
No 385
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.24 E-value=1.7e+02 Score=21.19 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCC
Q 032207 35 RSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD 71 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~d 71 (145)
.+.-.+|.+.|..+.+..--.|.||+|.|. |.|.+
T Consensus 107 ~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~--s~g~~ 141 (184)
T COG2840 107 EEARQELGAFIARARAEGLRCVLVIHGKGR--SKGSK 141 (184)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeCCCc--CCCCc
Confidence 556677888888888665555668899887 77644
No 386
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=24.11 E-value=1.9e+02 Score=22.72 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| .+.+|.....++.+.+.++.++....++++|..
T Consensus 149 llLLDEP--ts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 149 LLLMDEP--LASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4566777 589999999999999999876545556666553
No 387
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.06 E-value=2.3e+02 Score=21.28 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.+. ...+|++|.
T Consensus 159 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-g~tili~tH 196 (274)
T PRK13647 159 VIVLDEP--MAYLDPRGQETLMEILDRLHNQ-GKTVIVATH 196 (274)
T ss_pred EEEEECC--CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4566777 4899999999999999998754 444555554
No 388
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=24.05 E-value=1.8e+02 Score=24.07 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||-| .|.+|....+.+.+.+.++.++....+|+++..
T Consensus 189 lllLDEP--t~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 189 LFLADEP--TGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred EEEeeCC--cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 4667776 599999999999999999865444445555543
No 389
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.89 E-value=2.2e+02 Score=21.23 Aligned_cols=40 Identities=5% Similarity=0.248 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|......+.+.+.++..+....+++++..
T Consensus 163 lllLDEP--t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 163 VIILDEA--TSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4566777 499999999999999999865434444454443
No 390
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=23.81 E-value=2.2e+02 Score=18.69 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
++.+++.+ .++.+....|.+.++..+ ..++|+|..++
T Consensus 72 tL~l~~i~---~L~~~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 72 TLYLKNID---RLSPEAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp EEEEECGC---CS-HHHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred EEEECChH---HCCHHHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 35566655 589999999999999876 56678885444
No 391
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=23.81 E-value=2.3e+02 Score=20.52 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|.+....+.+.+.++.+. ...+++++.
T Consensus 162 llilDEP--t~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh 199 (242)
T PRK11124 162 VLLFDEP--TAALDPEITAQIVSIIRELAET-GITQVIVTH 199 (242)
T ss_pred EEEEcCC--CCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 4566777 4899999999999999998643 333444443
No 392
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=23.76 E-value=1.1e+02 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.637 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhccCCCeeEEEEEcCCCcccccC
Q 032207 38 MADMAQAFKSLDKDESVLVIILSGSGRAFCSGV 70 (145)
Q Consensus 38 ~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~ 70 (145)
+..+..+|.... |+|||||+|=.-++|.
T Consensus 78 ~~~~~~~l~kaK-----rIvVlTGAGVSvs~GI 105 (412)
T KOG2684|consen 78 LADFVKLLKKAK-----RIVVLTGAGVSVSAGI 105 (412)
T ss_pred HHHHHHHHHhcC-----eEEEEeCCceeeecCC
Confidence 344444454443 8999999986666664
No 393
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=23.60 E-value=2.3e+02 Score=22.15 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
|..+.+......| .+.+-++.+...++.+.. ....++||||++
T Consensus 67 i~~~~~~sh~~k~-t~~~hl~~fY~~f~~ik~-~~fDGlIITGAP 109 (300)
T TIGR01001 67 ITLLRTDSRKSKN-TPIEHLNKFYTTFEAVKD-RKFDGLIITGAP 109 (300)
T ss_pred EEEEEeccccCCC-CCHHHHHHHhhCHHHHhc-CCCCEEEEcCCC
Confidence 4455565555444 478999999999999974 568999999986
No 394
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=23.59 E-value=2.3e+02 Score=22.38 Aligned_cols=40 Identities=8% Similarity=0.310 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++.| .+.+|.....++.+.+.++.++....++++|..
T Consensus 157 llLLDEP--~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 157 ILLLDEP--FGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4566776 589999999999999999987655666766654
No 395
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=23.58 E-value=2.1e+02 Score=22.40 Aligned_cols=39 Identities=5% Similarity=0.281 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.++....++++|.
T Consensus 161 iLlLDEP--ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH 199 (343)
T PRK11153 161 VLLCDEA--TSALDPATTRSILELLKDINRELGLTIVLITH 199 (343)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4566666 48999999999999999987554445555554
No 396
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=23.42 E-value=1.5e+02 Score=21.65 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~ 64 (145)
.++.+.++++.+.+.++.+. ..++++++|.|.
T Consensus 17 ~~~~~~i~~~a~~i~~~~~~-g~~vvvV~ggG~ 48 (229)
T cd04239 17 GIDPEVLKEIAREIKEVVDL-GVEVAIVVGGGN 48 (229)
T ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCh
Confidence 68899999999999987543 347888888654
No 397
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=23.40 E-value=1.4e+02 Score=23.25 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=32.9
Q ss_pred EEEEcCCCCCCCCCH---HHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTR---SMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~---~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.|.||..+..|-+|. ---++..++++.+..||.+++|++--=
T Consensus 301 iIkLnGGePANFLDvGGgV~EdqV~~Af~ilTaDPkVk~iLvNiF 345 (412)
T KOG1447|consen 301 IIKLNGGEPANFLDVGGGVKEDQVYQAFKILTADPKVKAILVNIF 345 (412)
T ss_pred eEEecCCCCcceeeccCcccHHHHHHHhhhhccCCceeEEEEehh
Confidence 467777776788873 345678899999999999999988653
No 398
>PLN03037 lipase class 3 family protein; Provisional
Probab=23.34 E-value=61 Score=27.31 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=20.2
Q ss_pred cEEEeechhccHHhHHHHHhcCEEE
Q 032207 100 PIIGAISGFAVTAGFEIALACDVLV 124 (145)
Q Consensus 100 p~Ia~v~G~a~GgG~~l~l~~D~~i 124 (145)
..=-.+.||.+||.+.+..+.|++.
T Consensus 317 ~~SItVTGHSLGGALAtLaA~DIa~ 341 (525)
T PLN03037 317 EVSLTITGHSLGGALALLNAYEAAR 341 (525)
T ss_pred cceEEEeccCHHHHHHHHHHHHHHH
Confidence 3445588999999999999988754
No 399
>COG3800 Predicted transcriptional regulator [General function prediction only]
Probab=23.27 E-value=34 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=21.4
Q ss_pred hccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207 108 FAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC 144 (145)
Q Consensus 108 ~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~ 144 (145)
.|+|.||++..+.+++++. ..-...+....-+.+||
T Consensus 262 ~Ai~LGCel~~A~~~VY~~-gl~l~~~~~a~pIG~~C 297 (332)
T COG3800 262 FAIGLGCELSHAHKLVYSD-GLDLANASAATPIGPGC 297 (332)
T ss_pred eeeeccchhhhcccceecc-cccCCCccccCCcCCcc
Confidence 5677888888888887774 22222234444455555
No 400
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=23.20 E-value=2e+02 Score=18.06 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
++.+..++|...++.++ ..|..++++..
T Consensus 2 l~~~~~~qL~~~f~~l~--~pV~l~~f~~~ 29 (94)
T cd02974 2 LDANLKQQLKAYLERLE--NPVELVASLDD 29 (94)
T ss_pred CCHHHHHHHHHHHHhCC--CCEEEEEEeCC
Confidence 67889999999999877 34777777764
No 401
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.19 E-value=2.4e+02 Score=21.39 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......|.+.+.++.+. ...+|++|.
T Consensus 165 illLDEP--t~gLD~~~~~~l~~~l~~l~~~-g~til~vtH 202 (288)
T PRK13643 165 VLVLDEP--TAGLDPKARIEMMQLFESIHQS-GQTVVLVTH 202 (288)
T ss_pred EEEEECC--ccCCCHHHHHHHHHHHHHHHHC-CCEEEEEec
Confidence 4667777 4899999999999999998753 444444444
No 402
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=23.14 E-value=1.6e+02 Score=22.35 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcc--CCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeech
Q 032207 39 ADMAQAFKSLDK--DESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISG 107 (145)
Q Consensus 39 ~~l~~~l~~~~~--~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G 107 (145)
+.+.+.++.++. ...+..||+.|.=..+-...|++.+.-.........+.+++......|.||+ .|.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~-fi~G 81 (262)
T cd00844 12 DKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTI-FIGG 81 (262)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEE-EECC
Confidence 344444444432 3457888888864333344444433211110111122334444455677765 4434
No 403
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=1.4e+02 Score=21.21 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=21.2
Q ss_pred HhhccCCCeeEEEEEcCCCcccccCCchhhh
Q 032207 46 KSLDKDESVLVIILSGSGRAFCSGVDLTSAE 76 (145)
Q Consensus 46 ~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~ 76 (145)
..+-++...|.|||+|.|+.-.--.-..++.
T Consensus 37 ~~~L~~~~~r~VVfsg~Grai~KTVscaEil 67 (179)
T KOG2567|consen 37 TELLQKGSHRCVVFSGSGRAIVKTVSCAEIL 67 (179)
T ss_pred HHHhhCCCeeEEEEecCCcceeeeeeHHHHH
Confidence 3344478899999999987665555444543
No 404
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=23.13 E-value=2.4e+02 Score=20.74 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|......+.+.+.++.++ .. .|++.+
T Consensus 158 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-~~-tiii~s 194 (256)
T TIGR03873 158 LLLLDEP--TNHLDVRAQLETLALVRELAAT-GV-TVVAAL 194 (256)
T ss_pred EEEEcCc--cccCCHHHHHHHHHHHHHHHhc-CC-EEEEEe
Confidence 4566777 4899999999999999998743 33 444444
No 405
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=23.06 E-value=2.6e+02 Score=20.43 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-+|.| .+.+|....+++.+.+.++.+. ...+|++|.
T Consensus 172 llllDEP--t~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH 209 (252)
T CHL00131 172 LAILDET--DSGLDIDALKIIAEGINKLMTS-ENSIILITH 209 (252)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 4556666 5899999999999999888643 333444443
No 406
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=22.97 E-value=76 Score=20.65 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=20.1
Q ss_pred HHhcCCccEEEeechhccHHhHHHHHhcCE
Q 032207 93 QMERCRKPIIGAISGFAVTAGFEIALACDV 122 (145)
Q Consensus 93 ~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~ 122 (145)
.+...+...| .+.||.+||++...++.++
T Consensus 57 ~~~~~~~~~i-~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 57 LVEKYPDYSI-VITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHSTTSEE-EEEEETHHHHHHHHHHHHH
T ss_pred HHhcccCccc-hhhccchHHHHHHHHHHhh
Confidence 3445554444 4479999999998888764
No 407
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=22.94 E-value=2.2e+02 Score=22.14 Aligned_cols=40 Identities=13% Similarity=0.371 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.|.+|.| ..++|.....++.+.+.++.++....+|++|..
T Consensus 174 llilDEP--ts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 174 LLIADEP--TTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4566666 489999999999999999976556666766653
No 408
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=22.88 E-value=2.2e+02 Score=21.61 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=36.3
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCc
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDL 72 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl 72 (145)
++|++|-+..| |+.++.+-|.+.-+++..-..-+.-+++=+|+.||+-+.-
T Consensus 133 ~gVcHv~~~~p-----f~~k~reil~~~a~~l~~~~hd~~tvVciEGPrFStRAES 183 (283)
T KOG3985|consen 133 GGVCHVPFGPP-----FSQKLREILISTAKELTNPHHDDGTVVCIEGPRFSTRAES 183 (283)
T ss_pred CceEeccCCCC-----cCHHHHHHHHHHHHHhcCCcCCceeEEEeeCCccchHHHH
Confidence 67999988654 7888888788777777643222566777778888875543
No 409
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.82 E-value=2.5e+02 Score=21.24 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.+. ...+|+++.
T Consensus 166 lLlLDEP--t~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH 203 (287)
T PRK13641 166 ILCLDEP--AAGLDPEGRKEMMQLFKDYQKA-GHTVILVTH 203 (287)
T ss_pred EEEEECC--CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 4667777 4899999999999999998643 434444443
No 410
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=22.82 E-value=1.8e+02 Score=21.34 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcc
Q 032207 31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66 (145)
Q Consensus 31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F 66 (145)
..++.+.+..+.+.+.++... .-+.|++.|.|..+
T Consensus 18 ~~~~~~~i~~~a~~i~~~~~~-~~~~viVhGgG~~~ 52 (231)
T cd04254 18 FGIDPEVLNRIAREIKEVVDL-GVEVAIVVGGGNIF 52 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCcEEEEECCCccc
Confidence 567899999999999977643 34788888887543
No 411
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=22.76 E-value=2.2e+02 Score=21.83 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .|.+|+....++.+.+.++.++ . +.|++++
T Consensus 159 lllLDEP--t~gLD~~~~~~l~~~l~~l~~~-g-~till~s 195 (306)
T PRK13537 159 VLVLDEP--TTGLDPQARHLMWERLRSLLAR-G-KTILLTT 195 (306)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHhC-C-CEEEEEC
Confidence 4667777 4999999999999999998644 3 3455544
No 412
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=22.60 E-value=2.6e+02 Score=20.22 Aligned_cols=38 Identities=11% Similarity=0.378 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|.....++.+.+.++.+. ...+++++.
T Consensus 157 llllDEP--~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH 194 (240)
T PRK09493 157 LMLFDEP--TSALDPELRHEVLKVMQDLAEE-GMTMVIVTH 194 (240)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 4566777 4899999999999999988643 333444444
No 413
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=22.55 E-value=2.3e+02 Score=23.02 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=18.5
Q ss_pred HHHHHHHhc-C-CccEEEeechhccHHh
Q 032207 88 TDTVAQMER-C-RKPIIGAISGFAVTAG 113 (145)
Q Consensus 88 ~~~~~~l~~-~-~kp~Ia~v~G~a~GgG 113 (145)
+++++++.. + ..|+.+.+++...|..
T Consensus 251 R~fL~~L~~~~p~lPv~~LvD~DP~Gi~ 278 (384)
T PLN00060 251 RFILHRLSQTFPNLPILALVDWNPAGLA 278 (384)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCcchHH
Confidence 445555544 3 5899999999988743
No 414
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=22.52 E-value=2.2e+02 Score=22.12 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=50.0
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCC-CcccccCCchhh-hhhcc---cCcccHHHHH
Q 032207 18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS--GSG-RAFCSGVDLTSA-EDVFK---GDVKDVETDT 90 (145)
Q Consensus 18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g-~~F~~G~dl~~~-~~~~~---~~~~~~~~~~ 90 (145)
.|+.|.++. |+....+++.++++.+++. +++.+||- +.+ +.......+..+ ..... ..........
T Consensus 152 ~igYi~i~~------f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~ 224 (334)
T TIGR00225 152 SVGYIRISS------FSEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRH 224 (334)
T ss_pred EEEEEEEEe------cccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceE
Confidence 378887754 5556678899999888754 57888885 332 333222222111 10000 0000000000
Q ss_pred HH--HHhcCCccEEEeechhccHHhHHHHHh
Q 032207 91 VA--QMERCRKPIIGAISGFAVTAGFEIALA 119 (145)
Q Consensus 91 ~~--~l~~~~kp~Ia~v~G~a~GgG~~l~l~ 119 (145)
+. .-....+|++..+++.+..++=.++.+
T Consensus 225 ~~~~~~~~~~~pv~vLvn~~TaSaaE~~a~~ 255 (334)
T TIGR00225 225 YKANGRQPYNLPLVVLVNRGSASASEIFAGA 255 (334)
T ss_pred EecCCCccCCCCEEEEECCCCCcHHHHHHHH
Confidence 00 011357899999999998877555554
No 415
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=22.48 E-value=2.2e+02 Score=22.56 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| ...+|....++|.+.+.++.++....+|++|..
T Consensus 155 llLLDEP--~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 194 (356)
T PRK11650 155 VFLFDEP--LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 (356)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4566776 589999999999999999886655666666654
No 416
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=22.34 E-value=2.7e+02 Score=20.43 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .+.+|......+.+.+.++.++ ...+++++..
T Consensus 180 ~lllDEP--t~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~ 218 (247)
T cd03275 180 FFVLDEV--DAALDNTNVGKVASYIREQAGP-NFQFIVISLK 218 (247)
T ss_pred EEEEecc--cccCCHHHHHHHHHHHHHhccC-CcEEEEEECC
Confidence 5667777 4899999999999999998644 4455555553
No 417
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=22.27 E-value=1.3e+02 Score=19.20 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=18.9
Q ss_pred HHHHHHHHhhccCCCeeEEEEEc
Q 032207 39 ADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
+++.++++++.+++++-+|++|-
T Consensus 30 ee~~~~l~~l~~~~d~gII~ite 52 (100)
T PRK03957 30 EEAKNAIKELVENDEIGIIIITE 52 (100)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcH
Confidence 68888888888888888887764
No 418
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=22.25 E-value=3.1e+02 Score=21.12 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhccCCCeeEEEEEcCCCccccc
Q 032207 35 RSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G 69 (145)
..|=..+-.++-.....|+.++|+++|.|..|..|
T Consensus 69 g~mG~alpaAiGaklA~Pd~~VV~i~GDG~~f~mg 103 (286)
T PRK11867 69 TIHGRALAIATGLKLANPDLTVIVVTGDGDALAIG 103 (286)
T ss_pred hhhhcHHHHHHHHHHhCCCCcEEEEeCccHHHhCC
Confidence 34445555666655557888999999999777655
No 419
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=22.20 E-value=2.2e+02 Score=22.61 Aligned_cols=40 Identities=15% Similarity=0.406 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCC-CeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDE-SVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~-~v~~vvl~g~ 62 (145)
.+-||.| .+.+|.....+|.+.+.++.++. ...+|++|..
T Consensus 158 llLLDEP--~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 158 VLLLDEP--LSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred EEEEcCc--cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3566776 58999999999999999987653 5566666654
No 420
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=22.14 E-value=2.2e+02 Score=19.34 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+.+.+-+..|++++.-+..|.+.+.+.-+...-++|+|-|
T Consensus 43 viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~ 83 (136)
T PF05763_consen 43 VIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDG 83 (136)
T ss_pred EEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEec
Confidence 44444443459999988888887777666554446777766
No 421
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=22.10 E-value=2.9e+02 Score=19.75 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=22.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhcc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDK 50 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~ 50 (145)
.+-++.| .+.+|....+.+.+.+.++.+
T Consensus 171 llllDEP--t~~LD~~~~~~l~~~l~~~~~ 198 (226)
T cd03248 171 VLILDEA--TSALDAESEQQVQQALYDWPE 198 (226)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHcC
Confidence 4566776 488999999999999998864
No 422
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=22.08 E-value=1.9e+02 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-++-| .+.+|.....++.+.+.++.++....+|++|..
T Consensus 177 llllDEP--t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 177 LLIADEP--TTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred EEEEcCC--CCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 4667777 499999999999999999875434445555543
No 423
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.04 E-value=2.6e+02 Score=20.91 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-+|.| .+.+|.....+|.+.+.++.+. ...+|+++..
T Consensus 158 llllDEP--t~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~ 196 (275)
T PRK13639 158 IIVLDEP--TSGLDPMGASQIMKLLYDLNKE-GITIIISTHD 196 (275)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecC
Confidence 4566777 4899999999999999998654 4445555543
No 424
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.97 E-value=2.7e+02 Score=20.34 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-|+.| .+.+|....+.+.+.+.++.+ ...+|+++.
T Consensus 168 llllDEP--~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH 204 (251)
T PRK14251 168 VVLLDEP--TSALDPISSSEIEETLMELKH--QYTFIMVTH 204 (251)
T ss_pred EEEecCC--CccCCHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 4566777 499999999999999999853 334444444
No 425
>PRK08250 glutamine amidotransferase; Provisional
Probab=21.81 E-value=1.7e+02 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCccEEEeechh
Q 032207 87 ETDTVAQMERCRKPIIGAISGF 108 (145)
Q Consensus 87 ~~~~~~~l~~~~kp~Ia~v~G~ 108 (145)
..++++......||+++.+.|+
T Consensus 73 ~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 73 EQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred HHHHHHHHHHcCCCEEEEChhH
Confidence 3556666777899999888776
No 426
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=21.81 E-value=3.2e+02 Score=19.83 Aligned_cols=100 Identities=8% Similarity=-0.021 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhH
Q 032207 35 RSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGF 114 (145)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~ 114 (145)
.+..+++.+.+.+... .+..|+++|.=-.+..|.+.. ........+.+..+...+.|+++..-.+=...+.
T Consensus 14 ~~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~-------~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~~~~ 84 (231)
T TIGR01854 14 PDITALFLDFLREEAR--KADALYILGDLFEAWIGDDDP-------STLARSVAQAIRQVSDQGVPCYFMHGNRDFLIGK 84 (231)
T ss_pred hhHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCC-------CHHHHHHHHHHHHHHHCCCeEEEEcCCCchhhhH
Confidence 4455566666666543 467899988532222232211 0111233445566666667766665555544444
Q ss_pred HHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207 115 EIALACDVLVAAKGAKFIDTHARLVCKIS 143 (145)
Q Consensus 115 ~l~l~~D~~ia~~~a~f~~pe~~~G~~~g 143 (145)
.+.-...+.+..+...+.....++.+..|
T Consensus 85 ~~~~~~gi~~l~~~~~~~~~g~~ill~HG 113 (231)
T TIGR01854 85 RFAREAGMTLLPDPSVIDLYGQKVLLMHG 113 (231)
T ss_pred HHHHHCCCEEECCCEEEEECCEEEEEEcC
Confidence 45445666676666555554444444433
No 427
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=21.77 E-value=2.6e+02 Score=20.12 Aligned_cols=38 Identities=11% Similarity=0.266 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|......+.+.+.++.++ ...+++++.
T Consensus 134 llilDEP--~~~LD~~~~~~l~~~l~~~~~~-~~tvii~sH 171 (223)
T TIGR03771 134 VLLLDEP--FTGLDMPTQELLTELFIELAGA-GTAILMTTH 171 (223)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 4566776 4899999999999999988643 334444443
No 428
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.73 E-value=3e+02 Score=20.40 Aligned_cols=38 Identities=8% Similarity=0.399 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+.|+.|. .++|++++-|....+..+...... -|++|-
T Consensus 173 vmLFDEPT--SALDPElVgEVLkv~~~LAeEgrT-Mv~VTH 210 (256)
T COG4598 173 VMLFDEPT--SALDPELVGEVLKVMQDLAEEGRT-MVVVTH 210 (256)
T ss_pred eEeecCCc--ccCCHHHHHHHHHHHHHHHHhCCe-EEEEee
Confidence 45677774 899999999999999999976543 344443
No 429
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.73 E-value=2.6e+02 Score=21.35 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .|.+|....+++.+.+.++.+ . +.|++++.
T Consensus 154 lliLDEP--t~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH 190 (301)
T TIGR03522 154 VLILDEP--TTGLDPNQLVEIRNVIKNIGK--D-KTIILSTH 190 (301)
T ss_pred EEEEcCC--cccCCHHHHHHHHHHHHHhcC--C-CEEEEEcC
Confidence 4667777 499999999999999999864 3 55666553
No 430
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=21.72 E-value=1.1e+02 Score=19.07 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=15.6
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCccc
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFC 67 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~ 67 (145)
.+.++|..-.. .+++-++||+.|+-|-
T Consensus 10 AifQ~L~~~~~-~~v~~i~lTASGGpFr 36 (84)
T PF08436_consen 10 AIFQCLQGEKR-EEVEKIILTASGGPFR 36 (84)
T ss_dssp HHHHHSGHHHH-CTEEEEEEEE--STTT
T ss_pred HHHHHCCCCCc-cccCEEEEECcchhhC
Confidence 34444444332 4699999999886664
No 431
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=21.69 E-value=1.8e+02 Score=23.34 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCC-CcccccCCchhhhhhcccCc----ccHHHH
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS--GSG-RAFCSGVDLTSAEDVFKGDV----KDVETD 89 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g-~~F~~G~dl~~~~~~~~~~~----~~~~~~ 89 (145)
++|+.|++ +.|+....+++.++++++++. .++.+||- +.+ +.+....++..+.-...... ......
T Consensus 194 ~~IgYi~i------~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~ 266 (389)
T PLN00049 194 PKIGYIKL------TTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRD 266 (389)
T ss_pred CCEEEEEe------ccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCcee
Confidence 46888887 345666788999999998754 47888874 443 44444333322111000000 000000
Q ss_pred HHHH----HhcCCccEEEeechhccHHhHHHHH
Q 032207 90 TVAQ----MERCRKPIIGAISGFAVTAGFEIAL 118 (145)
Q Consensus 90 ~~~~----l~~~~kp~Ia~v~G~a~GgG~~l~l 118 (145)
.+.. .....+|++..+|+....++=.++.
T Consensus 267 ~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~ 299 (389)
T PLN00049 267 IYDADGSSAIATSEPLAVLVNKGTASASEILAG 299 (389)
T ss_pred EEecCCCccccCCCCEEEEECCCCccHHHHHHH
Confidence 0000 1124689999999998877744444
No 432
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=21.68 E-value=1.3e+02 Score=25.91 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEE-EEcC--CCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVII-LSGS--GRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA 109 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vv-l~g~--g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 109 (145)
|-+..++++.+.++-+.++|+..+++ ++|. |++-|- -|+ -+.+...+..+++++-.++++
T Consensus 156 fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSw-eDl-----------d~llL~tYs~lR~~~NIvl~v----- 218 (717)
T COG4981 156 FKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSW-EDL-----------DDLLLATYSELRSRDNIVLCV----- 218 (717)
T ss_pred ecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccch-hhc-----------ccHHHHHHHHHhcCCCEEEEe-----
Confidence 33456788899999999898865443 3332 122111 122 234556677888888877754
Q ss_pred cHHhHHHHH-hcCEEEEeCCcEEeccceee-eec
Q 032207 110 VTAGFEIAL-ACDVLVAAKGAKFIDTHARL-VCK 141 (145)
Q Consensus 110 ~GgG~~l~l-~~D~~ia~~~a~f~~pe~~~-G~~ 141 (145)
|||+.-.- +++|.-..=++.|++|-+-+ |+-
T Consensus 219 -GgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiL 251 (717)
T COG4981 219 -GGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGIL 251 (717)
T ss_pred -cCCcCChhhcccccccchhhhcCCCCCCcceeE
Confidence 45544333 55666555678888888777 653
No 433
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.67 E-value=2.9e+02 Score=20.00 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| .+.+|....+++.+.+.++.. . +.+++++.
T Consensus 164 ~lllDEP--t~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH 200 (242)
T TIGR03411 164 LLLLDEP--VAGMTDEETEKTAELLKSLAG--K-HSVVVVEH 200 (242)
T ss_pred EEEecCC--ccCCCHHHHHHHHHHHHHHhc--C-CEEEEEEC
Confidence 4667777 489999999999999999864 3 45666554
No 434
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.63 E-value=2.7e+02 Score=20.31 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.++ ..+|+++.
T Consensus 169 llllDEP--t~~LD~~~~~~l~~~l~~~~~~--~tii~vsH 205 (252)
T PRK14255 169 VILLDEP--TSALDPISSTQIENMLLELRDQ--YTIILVTH 205 (252)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHHhC--CEEEEEEC
Confidence 4566776 5999999999999999998642 34444444
No 435
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=21.53 E-value=2.3e+02 Score=22.10 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.|.++.| ..+||.....++.+.|.++.++....+|++|..
T Consensus 175 lLilDEP--ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 175 VVVADEP--VSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred EEEEECC--CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4566666 489999999999999999976655666666643
No 436
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.40 E-value=2.7e+02 Score=20.74 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|.....++.+.+.++.+. ...+|+++.
T Consensus 157 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH 194 (271)
T PRK13638 157 YLLLDEP--TAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSH 194 (271)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4566777 4899999999999999998643 334444443
No 437
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=21.35 E-value=91 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.8
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcC
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
++|.+.++.+.+|+++.++++.--
T Consensus 73 ~el~~~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 73 EELLELIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp HHHHHHHHHHHH-TT-SEEEEESS
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCC
Confidence 588889999999999999998753
No 438
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=21.33 E-value=2.1e+02 Score=22.74 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-||.| .+.||....+++.+.+.++.++....+|++|..
T Consensus 154 lLLLDEP--ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 154 VFLLDEP--LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 4667776 589999999999999999876544556666654
No 439
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.25 E-value=3.7e+02 Score=20.32 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccC---CCeeEEEEEcCC
Q 032207 18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKD---ESVLVIILSGSG 63 (145)
Q Consensus 18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~---~~v~~vvl~g~g 63 (145)
.|..|.+|... ....+.+-+.+|-+++.++-++ .+-|++||-+.+
T Consensus 133 PvV~isin~~~-~p~~~~~~~~~lG~al~~~i~~~~~~d~rV~iiaSGg 180 (268)
T cd07367 133 PVVPLIVNINT-DPAPSPRRCWALGKVLAQYVEKRRPAGERVAVIAAGG 180 (268)
T ss_pred CEEEEEecccC-CCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEccc
Confidence 47777777653 2456889999999999999555 556888887665
No 440
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=21.24 E-value=2.2e+02 Score=23.59 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++-| .+.+|....+++.+.+.++.++....+|++|.
T Consensus 448 lLllDEP--t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH 486 (520)
T TIGR03269 448 IVILDEP--TGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486 (520)
T ss_pred EEEEeCC--cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 4566666 49999999999999999987554444555544
No 441
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=21.01 E-value=1.3e+02 Score=22.75 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=15.7
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcCCCccccc
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G 69 (145)
+++.+.+.+. -++||+||+|=.=.+|
T Consensus 3 ~~~~~~l~~a-----~~ivvltGAGiSa~sG 28 (250)
T COG0846 3 EEVAQALKEA-----KRIVVLTGAGISAESG 28 (250)
T ss_pred HHHHHHHHhc-----CcEEEEeCCccccccC
Confidence 4455555553 3899999986333333
No 442
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=20.83 E-value=2.8e+02 Score=21.27 Aligned_cols=39 Identities=15% Similarity=0.439 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| .+.+|....+.+.+.+.++.+. ...+|+++..
T Consensus 186 lLlLDEP--t~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd 224 (305)
T PRK13651 186 FLVFDEP--TAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHD 224 (305)
T ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeC
Confidence 4667777 4899999999999999998743 4455555543
No 443
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.81 E-value=4e+02 Score=20.49 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhhccCCCeeEEEEEcCCCccccc--CCchhhhh------hccc-----CcccHHHHHHHHHhcCCcc
Q 032207 34 TRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG--VDLTSAED------VFKG-----DVKDVETDTVAQMERCRKP 100 (145)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G--~dl~~~~~------~~~~-----~~~~~~~~~~~~l~~~~kp 100 (145)
..+|++++.++.+.+.+..-.-++-.+..|+.+-.+ .|.+.... .... .+......+-+....+|.|
T Consensus 125 e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~vp 204 (265)
T COG1830 125 EREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACGVP 204 (265)
T ss_pred hHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCCCC
Confidence 589999999999999987665566577888777543 23222211 0000 1111112333456678999
Q ss_pred EEEee
Q 032207 101 IIGAI 105 (145)
Q Consensus 101 ~Ia~v 105 (145)
+|.+-
T Consensus 205 VviaG 209 (265)
T COG1830 205 VVIAG 209 (265)
T ss_pred EEEeC
Confidence 99874
No 444
>PRK00358 pyrH uridylate kinase; Provisional
Probab=20.71 E-value=2.1e+02 Score=20.86 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 32 SLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
.++.+.++.+.+.+.++.+. ..++|+++|.|
T Consensus 19 ~~~~~~i~~~~~~i~~~~~~-g~~vvlV~gGG 49 (231)
T PRK00358 19 GIDPEVLDRIAEEIKEVVEL-GVEVAIVVGGG 49 (231)
T ss_pred CCCHHHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 47899999999999988754 35788888864
No 445
>TIGR02579 cas_csx3 CRISPR-associated protein, Csx3 family. Members of this family are found encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).
Probab=20.61 E-value=1.6e+02 Score=18.42 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeec
Q 032207 33 LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAIS 106 (145)
Q Consensus 33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~ 106 (145)
++.+-+.++. +- +.=+.-+.|+|+|++..+-.+ .....-.+.|.|+..+
T Consensus 12 l~p~dl~~~~--lP--~~id~~~gvvIsGrgP~WLy~---------------------~Lah~~h~~p~iav~d 60 (83)
T TIGR02579 12 LVPEDLKQLQ--PP--AGVNTRKGVVLSGRGPIWLYG---------------------FLVHFYHPTPFVAVYD 60 (83)
T ss_pred CCHHHHhccc--CC--cccCCCccEEEeccCcHHHHH---------------------HHHHHhCCCceEEEEc
Confidence 8888887775 11 112334899999988765332 1223337888888875
No 446
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.59 E-value=2.6e+02 Score=21.30 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-||.| .+.+|+....++.+.+.++.++ . +.|++++
T Consensus 145 lllLDEP--t~gLD~~~~~~l~~~l~~~~~~-g-~tvi~~s 181 (302)
T TIGR01188 145 VLFLDEP--TTGLDPRTRRAIWDYIRALKEE-G-VTILLTT 181 (302)
T ss_pred EEEEeCC--CcCCCHHHHHHHHHHHHHHHhC-C-CEEEEEC
Confidence 4567777 4899999999999999998754 3 3444444
No 447
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.58 E-value=3.1e+02 Score=20.01 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
.+-++.| .+.+|.....++.+.+.++.. . +.+++.+
T Consensus 167 lllLDEP--~~~LD~~~~~~l~~~l~~~~~--~-~tiii~s 202 (250)
T PRK14247 167 VLLADEP--TANLDPENTAKIESLFLELKK--D-MTIVLVT 202 (250)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHhc--C-CEEEEEe
Confidence 4566776 589999999999999999853 3 3444444
No 448
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=20.49 E-value=1.2e+02 Score=22.75 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=18.0
Q ss_pred HHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 39 ADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 39 ~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
.++.++|+.+.+++.++++++||+.
T Consensus 39 ~~~~~~L~~L~~~~g~~v~i~SGR~ 63 (266)
T PRK10187 39 DNILQGLQLLATANDGALALISGRS 63 (266)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 4445556666666788999999974
No 449
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=20.48 E-value=2.6e+02 Score=22.33 Aligned_cols=40 Identities=13% Similarity=0.337 Sum_probs=32.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+-|+.| ...+|....++|.+.+..+.++....+|++|..
T Consensus 165 llLLDEP--~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 165 VLLLDES--LSALDYKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred EEEEeCC--CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4567777 588999999999999999987656677777764
No 450
>PRK03195 hypothetical protein; Provisional
Probab=20.42 E-value=1.5e+02 Score=21.48 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=31.9
Q ss_pred CcEEEEEEcCCC---CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-Cccccc
Q 032207 17 MGIAYVTINRPK---SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSG 69 (145)
Q Consensus 17 ~~v~~i~l~~~~---~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G 69 (145)
+++++|..+.+. .++.+-.++++ .|++.-.+.-|+-|+|.|-. +.|.-|
T Consensus 120 ~gvL~V~~~SsaWAteL~~~k~~Ii~----rLN~~lG~~vV~~I~i~GP~~psw~~g 172 (186)
T PRK03195 120 DGVLSVSAESTAWATQLRMMQAQLLA----KIAAAVGDGVVTSLKITGPAAPSWRKG 172 (186)
T ss_pred CCEEEEEeCCHHHHHHHHhhHHHHHH----HHHHHhCccceeEEEEeCCCCCCCCcC
Confidence 789999998864 23333333344 44444445779999999964 667665
No 451
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=20.35 E-value=3.3e+02 Score=20.47 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC
Q 032207 21 YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62 (145)
Q Consensus 21 ~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~ 62 (145)
.+.|+.| .+-+|......+.+.+.++.+. -|+|++++.
T Consensus 154 i~vlDEP--~sGLDi~~~r~~~dfi~q~k~e--gr~viFSSH 191 (245)
T COG4555 154 ILVLDEP--TSGLDIRTRRKFHDFIKQLKNE--GRAVIFSSH 191 (245)
T ss_pred eEEEcCC--CCCccHHHHHHHHHHHHHhhcC--CcEEEEecc
Confidence 4667777 4889999999999999999854 377776653
No 452
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=20.30 E-value=2.3e+02 Score=17.46 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=30.8
Q ss_pred EEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC
Q 032207 13 TRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63 (145)
Q Consensus 13 ~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g 63 (145)
+.. +++..++++.+ ++..-..++.+.+.....++..+.+|+.-.+
T Consensus 4 ~~~-~~v~ii~~~G~-----l~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (100)
T cd06844 4 EKV-DDYWVVRLEGE-----LDHHSVEQFKEELLHNITNVAGKTIVIDISA 48 (100)
T ss_pred EEE-CCEEEEEEEEE-----ecHhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 344 67889998755 6667777777776544434557888887665
No 453
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.26 E-value=1.2e+02 Score=24.87 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhccCCCeeEEEEEcCCCc
Q 032207 38 MADMAQAFKSLDKDESVLVIILSGSGRA 65 (145)
Q Consensus 38 ~~~l~~~l~~~~~~~~v~~vvl~g~g~~ 65 (145)
.+++.++++.+.+++.++-|+|||+.+.
T Consensus 140 ~eei~~~i~yI~~~p~I~~VlLSGGDPL 167 (417)
T TIGR03820 140 KEQILEGIEYIRNTPQIRDVLLSGGDPL 167 (417)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCccc
Confidence 5678888888888889999999986543
No 454
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=20.26 E-value=3.2e+02 Score=19.26 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=30.2
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g 61 (145)
+.|.+...++|.|.-.|+.+---+|.+.. ...-++++++.+.|
T Consensus 30 d~viVaV~~np~K~plFsleER~~l~~~~--~~~l~nV~V~~f~~ 72 (159)
T COG0669 30 DEVIVAVAINPSKKPLFSLEERVELIREA--TKHLPNVEVVGFSG 72 (159)
T ss_pred cEEEEEEEeCCCcCCCcCHHHHHHHHHHH--hcCCCceEEEeccc
Confidence 56778888899999999977665555443 33446788876665
No 455
>TIGR03790 conserved hypothetical protein TIGR03790. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.
Probab=20.22 E-value=3.5e+02 Score=21.38 Aligned_cols=43 Identities=7% Similarity=0.164 Sum_probs=30.8
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhc------------cCCCeeEEEEEc
Q 032207 17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLD------------KDESVLVIILSG 61 (145)
Q Consensus 17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~------------~~~~v~~vvl~g 61 (145)
++|..| +-|.+.+....+..++|.+-++..- ..+.++++|++=
T Consensus 30 ~nii~L--~~p~~e~i~~~ef~~~I~~pl~~~L~~~~~~~~~~~~~~~~I~~~vl~~ 84 (316)
T TIGR03790 30 ENLITL--DLPPKETISREEFFQQIKEPLRAYLVENGWWVPSGKRLGARIRVLVLTW 84 (316)
T ss_pred HHEEEE--ECCCccccccHHHHHHHHHHHHHHHHhcccccccccccccceEEEEEec
Confidence 455444 5566678889898888888887771 246799998873
No 456
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=20.07 E-value=1.5e+02 Score=19.84 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhc--CCccEEEeechhccH
Q 032207 40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMER--CRKPIIGAISGFAVT 111 (145)
Q Consensus 40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~--~~kp~Ia~v~G~a~G 111 (145)
.+.+.+.+--.+++-.+|.+||-|..|-- -+.+.++..+.. ..+|+|...-|.--|
T Consensus 48 ~i~~~i~~~~~~~~~~vv~ltGvG~l~P~----------------~R~h~lL~~l~~~~~~~plv~FyPG~y~g 105 (126)
T PF08747_consen 48 KIAEYIQEELEDDDRDVVFLTGVGSLFPF----------------IRSHELLNNLQPKFGNVPLVVFYPGEYDG 105 (126)
T ss_pred HHHHHHHHhccCCCCcEEEEeCcchhcch----------------hhHHHHHHHHHHHhcCCeEEEECCceecC
Confidence 33344443322455679999998876532 123344444432 278899888887553
Done!