Query 032208
Match_columns 145
No_of_seqs 125 out of 307
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_F RPL7A, 60S ribosomal pr 100.0 2.2E-68 7.5E-73 443.8 12.8 137 1-143 3-139 (255)
2 3iz5_H 60S ribosomal protein L 100.0 6.5E-71 2.2E-75 459.2 -3.3 142 1-143 1-142 (258)
3 3izc_H 60S ribosomal protein R 100.0 1E-68 3.5E-73 446.1 -3.2 141 1-143 1-146 (256)
4 2zkr_f 60S ribosomal protein L 100.0 1.1E-63 3.7E-68 417.7 1.2 139 5-143 8-150 (266)
5 3jyw_G 60S ribosomal protein L 97.9 1.5E-07 5.2E-12 69.5 -5.2 38 106-143 1-40 (113)
6 1xbi_A 50S ribosomal protein L 44.0 7.6 0.00026 27.7 1.1 33 97-143 12-44 (120)
7 2d89_A EHBP1 protein; all alph 26.2 21 0.00073 25.3 1.0 25 73-99 29-53 (119)
8 3tif_A Uncharacterized ABC tra 26.1 69 0.0024 24.5 4.0 41 55-95 147-190 (235)
9 2d88_A Protein mical-3; all al 25.5 66 0.0022 22.8 3.5 25 73-99 29-53 (121)
10 2pcj_A ABC transporter, lipopr 24.5 78 0.0027 23.9 4.0 43 53-95 140-185 (224)
11 1wyl_A NEDD9 interacting prote 24.0 24 0.0008 25.0 0.8 26 73-100 27-52 (116)
12 2ixe_A Antigen peptide transpo 23.6 96 0.0033 24.3 4.5 44 54-97 157-203 (271)
13 1g6h_A High-affinity branched- 22.9 75 0.0026 24.6 3.6 42 54-95 154-198 (257)
14 2pjz_A Hypothetical protein ST 22.3 95 0.0032 24.4 4.2 45 53-97 128-175 (263)
15 2d87_A Smoothelin splice isofo 21.3 28 0.00097 25.1 0.8 25 73-99 27-51 (128)
16 1ji0_A ABC transporter; ATP bi 20.6 1E+02 0.0035 23.5 4.0 42 54-95 140-184 (240)
No 1
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=100.00 E-value=2.2e-68 Score=443.81 Aligned_cols=137 Identities=58% Similarity=0.969 Sum_probs=120.2
Q ss_pred CCCCCCCCCCCcccccCCcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCcccccccc
Q 032208 1 MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKT 80 (145)
Q Consensus 1 m~~~~~~~~~~~~~k~~~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~ 80 (145)
|+|++|++. ++ ..+++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+||||+++
T Consensus 3 ~~p~~~~~~----~~--~~k~~nplfekrpknfgig~diqpkrdlt~fvkwp~yirlqrq~~il~~rlkvpp~inqf~~~ 76 (255)
T 4a17_F 3 KAPKKITKP----KK--AEKKKNPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKT 76 (255)
T ss_dssp ----------------------CCTTCCCCCCCSSSSSCCCCCCCGGGCBCCHHHHHHHHHHHHHHHSBCCHHHHGGGCC
T ss_pred CCCccCccc----cc--cccccCcccccCCCcCCcCCCCCCccccccceeccceeeHHHHHHHHHhcccCCCcccccCCC
Confidence 778755532 12 248899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhhcCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCceeeccchhhhHHhhhc
Q 032208 81 LDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQM 143 (145)
Q Consensus 81 Ldk~~atqLfkLl~KYrPEtk~eKk~RL~~~Ae~ka~gk~~~~kkp~vlk~GiN~VT~LVE~~ 143 (145)
||+|+|+|||+|+|||||||++||++||+++||++|+|+++++++|++|+.|+|+||++||++
T Consensus 77 ld~~~a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekg 139 (255)
T 4a17_F 77 LDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENK 139 (255)
T ss_dssp CCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTS
T ss_pred CChhhHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 2
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=100.00 E-value=6.5e-71 Score=459.16 Aligned_cols=142 Identities=87% Similarity=1.325 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCcccccCCcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCcccccccc
Q 032208 1 MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKT 80 (145)
Q Consensus 1 m~~~~~~~~~~~~~k~~~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~ 80 (145)
|+|+.|+..|+.. +.++++++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+||||+++
T Consensus 1 ~~pk~~~~~~~~~-~~~~~k~~nplfekrpknfgigqdiqpkrdltrfvkwP~yirlqrqr~il~~rlKvppainqF~~~ 79 (258)
T 3iz5_H 1 MAPKRGGRAPVPA-KKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRT 79 (258)
T ss_dssp ----------------------------------------------------------CCSCCCCHHHHSCCSCSHHHHH
T ss_pred CCCCCCCCCCCcc-ccccccccCcccccCCCccccCccCCCCcccceeeeccceeeHHHHHHHHHhcccCCCcccccCCc
Confidence 8998555444332 223368999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhhcCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCceeeccchhhhHHhhhc
Q 032208 81 LDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQM 143 (145)
Q Consensus 81 Ldk~~atqLfkLl~KYrPEtk~eKk~RL~~~Ae~ka~gk~~~~kkp~vlk~GiN~VT~LVE~~ 143 (145)
||+|+|+|||+|+|||||||++||++||+++||++|+|+++++++|++|++|+|+||+|||++
T Consensus 80 ld~~tatql~kl~~KYrPEtk~ekk~rL~~~a~~ka~gk~~~~krp~~lk~GvneVTklVE~k 142 (258)
T 3iz5_H 80 LDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 142 (258)
T ss_dssp HHHHHCCCCCCCCCCCCCTHHHHHHHHHHHHHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCCCCCCCCceeecccHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999997
No 3
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=100.00 E-value=1e-68 Score=446.06 Aligned_cols=141 Identities=57% Similarity=0.884 Sum_probs=83.6
Q ss_pred CCCCCCCCCC---CcccccCCcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCccccc
Q 032208 1 MAPKRGGKVA---AAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQF 77 (145)
Q Consensus 1 m~~~~~~~~~---~~~~k~~~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQF 77 (145)
|+| |++++ ++.+++++++++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+||||
T Consensus 1 ~~~--~kk~~~~p~~~kk~~~kk~~nplfekrpknfgig~diqpkrdl~~fvkwp~yi~lqrq~~il~~rlkvpp~inqf 78 (256)
T 3izc_H 1 MAP--GKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQF 78 (256)
T ss_dssp -------------------------------------------------------------CCSSCCCTTTTCCCSCSHH
T ss_pred CCC--CCCCCCCCcchhhhccccccCcccccCCcccccCCCCCCcccchhheeccceeeHHHHHHHHHhcccCCCchhhc
Confidence 765 66654 3667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHhhhcCcCCHHHHHHHHHHHHHHHHcCCC--CCCCCCceeeccchhhhHHhhhc
Q 032208 78 TKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT--VEAKKPIVVKYGLNHVTYLIEQM 143 (145)
Q Consensus 78 t~~Ldk~~atqLfkLl~KYrPEtk~eKk~RL~~~Ae~ka~gk~--~~~kkp~vlk~GiN~VT~LVE~~ 143 (145)
+++||+|+|||||+|+|||||||++||++||+++||++|+|++ +|+++|.+|+.|+|+|+++||++
T Consensus 79 ~~~ld~~~a~~l~kl~~kyrpetk~ekk~rl~~~a~~~a~gk~~~~~~k~p~~lk~G~keV~KaIekg 146 (256)
T 3izc_H 79 QYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENK 146 (256)
T ss_dssp HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSSCSSCCCSCCEEESHHHHHHHHHHT
T ss_pred CCcCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhccHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999997 78999999999999999999986
No 4
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.1e-63 Score=417.73 Aligned_cols=139 Identities=58% Similarity=0.947 Sum_probs=44.4
Q ss_pred CCCCCC-C--cccccCCcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCccccccccc
Q 032208 5 RGGKVA-A--APAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTL 81 (145)
Q Consensus 5 ~~~~~~-~--~~~k~~~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~L 81 (145)
+|++++ + +.+++++++++|||||+|||||||||||||+|||||||+||+|||||||++||++||||||+||||+++|
T Consensus 8 ~~kk~~~~~~~~k~~~~~~~~npl~ekrpknf~ig~~i~pkrdl~rfvkwp~yirlqrq~~il~~rlkvpp~inqf~~~l 87 (266)
T 2zkr_f 8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQAL 87 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCcCCCCccccccccccccCCcccccCccccccCCCcccccchHhHhccchHHHHHHHHHHHHhhccCCCchhhccccc
Confidence 355554 3 4577788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhhcCcCCHHHHHHHHHHHHHHHHcCCC-CCCCCCceeeccchhhhHHhhhc
Q 032208 82 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT-VEAKKPIVVKYGLNHVTYLIEQM 143 (145)
Q Consensus 82 dk~~atqLfkLl~KYrPEtk~eKk~RL~~~Ae~ka~gk~-~~~kkp~vlk~GiN~VT~LVE~~ 143 (145)
|+|+|+|||+|||||||||++||++||+++||++|+|++ +++++|..|..|+|+|+.+||++
T Consensus 88 d~~~a~~l~~l~~kyrpe~k~ekk~rl~~~a~~~a~~~~~~~~k~~~~L~~G~keV~KaIekg 150 (266)
T 2zkr_f 88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENK 150 (266)
T ss_dssp ----------------CHHHHHHHHHHHHTTSSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTT
T ss_pred cchhHHHHHHHHhhcCcccHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeeeChHHHHHHHHhC
Confidence 999999999999999999999999999999999999999 78999999999999999999986
No 5
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=97.91 E-value=1.5e-07 Score=69.54 Aligned_cols=38 Identities=61% Similarity=0.783 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCC--CCCCCCceeeccchhhhHHhhhc
Q 032208 106 ERLLKRAQAEAEGKT--VEAKKPIVVKYGLNHVTYLIEQM 143 (145)
Q Consensus 106 ~RL~~~Ae~ka~gk~--~~~kkp~vlk~GiN~VT~LVE~~ 143 (145)
+||+++||++|+|++ +|+++|++|+.|+|+||++||++
T Consensus 1 ~rl~~~a~~~~~~~~~~~~~~~~~~l~~G~~~v~kaI~~g 40 (113)
T 3jyw_G 1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENK 40 (113)
T ss_dssp CCCCSSCCCHHHHHHHHTCSSSSSCEEESHHHHHHTTTTT
T ss_pred CccHHHHHHHhcCCCCCCCCCCCchhhchHHHHHHHHHcC
Confidence 478888999999998 79999999999999999999986
No 6
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=44.01 E-value=7.6 Score=27.72 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=24.2
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCCCceeeccchhhhHHhhhc
Q 032208 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQM 143 (145)
Q Consensus 97 rPEtk~eKk~RL~~~Ae~ka~gk~~~~kkp~vlk~GiN~VT~LVE~~ 143 (145)
-||+-.+|-.+|+..| | -+..|+|+|+..|+++
T Consensus 12 ~p~~l~~k~~~ll~~A-----g---------kl~~G~~~v~kai~~g 44 (120)
T 1xbi_A 12 VPEEIQKELLDAVAKA-----Q---------KIKKGANEVTKAVERG 44 (120)
T ss_dssp CCHHHHHHHHHHHHTC-----S---------EEEESHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc-----C---------CccccHHHHHHHHHcC
Confidence 5677777777776543 2 2568999999999975
No 7
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.23 E-value=21 Score=25.32 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.7
Q ss_pred cccccccccchhhHHHHHHHhhhcCcC
Q 032208 73 ALNQFTKTLDKNLASSLFKLLLKYRPE 99 (145)
Q Consensus 73 aInQFt~~Ldk~~atqLfkLl~KYrPE 99 (145)
.|+-|+. |.....-+.-|+|.|+|+
T Consensus 29 ~v~nFs~--sw~dG~af~aLi~~~~P~ 53 (119)
T 2d89_A 29 KITNFTT--SWRNGLSFCAILHHFRPD 53 (119)
T ss_dssp CCCCSSH--HHHTTHHHHHHHHHHCTT
T ss_pred CCCCccc--cccccHHHHHHHHHHCcC
Confidence 4899986 677788899999999997
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=26.09 E-value=69 Score=24.49 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=34.4
Q ss_pred HHhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 55 IRIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 55 irlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
---||||-.|...|=..|.| +.-+..||.....+++.++.+
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 190 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 45799999999998887776 666889999999999999954
No 9
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=25.52 E-value=66 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.2
Q ss_pred cccccccccchhhHHHHHHHhhhcCcC
Q 032208 73 ALNQFTKTLDKNLASSLFKLLLKYRPE 99 (145)
Q Consensus 73 aInQFt~~Ldk~~atqLfkLl~KYrPE 99 (145)
.|+-|+. |.....-+.-|+|.|+|+
T Consensus 29 ~v~nFs~--sw~DG~af~aLih~~~P~ 53 (121)
T 2d88_A 29 NVTDLTM--SWKSGLALCAIIHRYRPD 53 (121)
T ss_dssp CCCCSSH--HHHTSHHHHHHHHHHCTT
T ss_pred CCCCchh--hccccHHHHHHHHHhCcC
Confidence 4889986 667778899999999997
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.53 E-value=78 Score=23.94 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=33.0
Q ss_pred hhHHhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 53 KAIRIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 53 ~YirlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
.+-.-||||-.|...|=..|.| +.-+..||..+...++.++..
T Consensus 140 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 3455788888888887776665 555788999999999888844
No 11
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=23.98 E-value=24 Score=24.98 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=21.2
Q ss_pred cccccccccchhhHHHHHHHhhhcCcCC
Q 032208 73 ALNQFTKTLDKNLASSLFKLLLKYRPED 100 (145)
Q Consensus 73 aInQFt~~Ldk~~atqLfkLl~KYrPEt 100 (145)
.|+-|+. |.....-+.-|+|.|+|+.
T Consensus 27 ~v~nFs~--sw~dG~af~aLih~~~P~l 52 (116)
T 1wyl_A 27 HVSDLSS--SWADGLALCALVYRLQPGL 52 (116)
T ss_dssp CCSCTTT--TTTSSHHHHHHHHHHCTTS
T ss_pred CCCCccc--cccccHHHHHHHHHHCcCC
Confidence 4899986 5666778999999999864
No 12
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=23.63 E-value=96 Score=24.30 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=37.0
Q ss_pred hHHhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhhcC
Q 032208 54 AIRIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLKYR 97 (145)
Q Consensus 54 YirlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~KYr 97 (145)
+-.-||||-.|...|=-.|.| +.-+..||..+...++.++..+.
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 455799999999998887765 66788999999999999997764
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.89 E-value=75 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=33.8
Q ss_pred hHHhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 54 AIRIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 54 YirlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
+---||||..|...|=..|.| +.-+..||......++.++.+
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 445689998888888776665 677889999999999999854
No 14
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=22.26 E-value=95 Score=24.38 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=35.6
Q ss_pred hhHHhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhhcC
Q 032208 53 KAIRIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLKYR 97 (145)
Q Consensus 53 ~YirlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~KYr 97 (145)
.+-.-||||-.|...|=..|.| +.-+..||..+...++.++..+.
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc
Confidence 3455788998888888877765 66688899999999999987653
No 15
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=21.30 E-value=28 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.7
Q ss_pred cccccccccchhhHHHHHHHhhhcCcC
Q 032208 73 ALNQFTKTLDKNLASSLFKLLLKYRPE 99 (145)
Q Consensus 73 aInQFt~~Ldk~~atqLfkLl~KYrPE 99 (145)
.|+-|+. |.....-+.-|+|.|+|+
T Consensus 27 ~V~nFs~--sw~DG~af~aLih~~~P~ 51 (128)
T 2d87_A 27 DIQNFSS--SWSDGMAFCALVHNFFPE 51 (128)
T ss_dssp CCSCTTT--TTTSSHHHHHHHHHHCTT
T ss_pred CCCCccc--cccccHHHHHHHHHHCcC
Confidence 4889986 566677899999999986
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.55 E-value=1e+02 Score=23.51 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=33.8
Q ss_pred hHHhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 54 AIRIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 54 YirlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
+-.-||||-.|...|=..|.| +.-+..||......++.++..
T Consensus 140 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 445688998888888777765 666889999999999999855
Done!