Query 032208
Match_columns 145
No_of_seqs 125 out of 307
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 17:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2alea1 d.79.3.1 (A:1-126) Sma 58.0 5.5 0.0004 27.2 4.1 15 129-143 33-47 (126)
2 d2aifa1 d.79.3.1 (A:16-130) Ri 51.2 8.2 0.0006 25.5 4.0 15 129-143 25-39 (115)
3 d1xbia1 d.79.3.1 (A:2-116) Rib 46.1 9.9 0.00072 25.1 3.7 37 97-144 5-41 (115)
4 d2fc3a1 d.79.3.1 (A:4-127) Rib 40.3 8.3 0.0006 26.0 2.6 15 129-143 29-43 (124)
5 d1rlga_ d.79.3.1 (A:) Ribosoma 34.9 13 0.00096 24.2 2.9 35 98-143 2-36 (113)
6 d2pmka1 c.37.1.12 (A:467-707) 32.9 23 0.0017 26.1 4.3 40 56-95 142-184 (241)
7 d1l2ta_ c.37.1.12 (A:) MJ0796 31.3 22 0.0016 26.2 4.0 40 56-95 148-190 (230)
8 d1jj7a_ c.37.1.12 (A:) Peptide 31.1 27 0.0019 25.8 4.4 41 56-96 154-197 (251)
9 d2ozba1 d.79.3.1 (A:4-128) Spl 26.0 37 0.0027 22.6 4.1 15 129-143 32-46 (125)
10 d1bkra_ a.40.1.1 (A:) beta-spe 25.0 19 0.0014 23.2 2.3 41 73-115 22-72 (108)
11 d1oxxk2 c.37.1.12 (K:1-242) Gl 23.2 37 0.0027 25.2 3.9 40 56-95 143-185 (242)
12 d1vqof1 d.79.3.1 (F:1-119) Rib 22.0 36 0.0027 22.3 3.3 15 129-143 29-43 (119)
13 d1g6ha_ c.37.1.12 (A:) MJ1267 21.8 42 0.003 24.6 3.9 41 55-95 152-195 (254)
14 d2hyda1 c.37.1.12 (A:324-578) 21.2 35 0.0025 25.3 3.4 40 57-96 158-200 (255)
15 d3b60a1 c.37.1.12 (A:329-581) 20.1 38 0.0028 24.9 3.3 40 56-95 155-197 (253)
No 1
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=57.95 E-value=5.5 Score=27.23 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.5
Q ss_pred eeccchhhhHHhhhc
Q 032208 129 VKYGLNHVTYLIEQM 143 (145)
Q Consensus 129 lk~GiN~VT~LVE~~ 143 (145)
|..|+|+||..||++
T Consensus 33 l~~G~~ev~K~i~~g 47 (126)
T d2alea1 33 LKKGANEATKTLNRG 47 (126)
T ss_dssp EEESHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHcC
Confidence 678999999999986
No 2
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]}
Probab=51.18 E-value=8.2 Score=25.52 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.9
Q ss_pred eeccchhhhHHhhhc
Q 032208 129 VKYGLNHVTYLIEQM 143 (145)
Q Consensus 129 lk~GiN~VT~LVE~~ 143 (145)
+..|+|.|+..||++
T Consensus 25 l~~G~~~v~k~i~~g 39 (115)
T d2aifa1 25 LRKGANEATKALNRG 39 (115)
T ss_dssp EEESHHHHHHHHHTT
T ss_pred eeecHHHHHHHHHcC
Confidence 557999999999975
No 3
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=46.12 E-value=9.9 Score=25.15 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=26.1
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCCCceeeccchhhhHHhhhcc
Q 032208 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQML 144 (145)
Q Consensus 97 rPEtk~eKk~RL~~~Ae~ka~gk~~~~kkp~vlk~GiN~VT~LVE~~~ 144 (145)
++|+.+|..++++..+. .+| -+..|+|.|+..||++-
T Consensus 5 ~~~~p~e~~~~~l~~~~--ka~---------~l~~G~~~v~kai~~~~ 41 (115)
T d1xbia1 5 KFKVPEEIQKELLDAVA--KAQ---------KIKKGANEVTKAVERGI 41 (115)
T ss_dssp CSCCCHHHHHHHHHHHH--TCS---------EEEESHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHHHHH--HhC---------CccccHHHHHHHHHcCC
Confidence 57777777777776543 112 35679999999999863
No 4
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]}
Probab=40.30 E-value=8.3 Score=25.95 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.2
Q ss_pred eeccchhhhHHhhhc
Q 032208 129 VKYGLNHVTYLIEQM 143 (145)
Q Consensus 129 lk~GiN~VT~LVE~~ 143 (145)
|..|+|+|+..|+++
T Consensus 29 l~~G~~~v~k~i~~~ 43 (124)
T d2fc3a1 29 IKKGTNETTKAVERG 43 (124)
T ss_dssp EEESHHHHHHHHHTT
T ss_pred EeecHHHHHHHHHcC
Confidence 667999999999875
No 5
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=34.92 E-value=13 Score=24.24 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCCceeeccchhhhHHhhhc
Q 032208 98 PEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQM 143 (145)
Q Consensus 98 PEtk~eKk~RL~~~Ae~ka~gk~~~~kkp~vlk~GiN~VT~LVE~~ 143 (145)
||+-+++-..++..|. .+|+ +..|+|+|+..|+++
T Consensus 2 p~~~~~ki~~~l~~a~--~agk---------l~~G~~~v~k~l~~~ 36 (113)
T d1rlga_ 2 PEDMQNEALSLLEKVR--ESGK---------VKKGTNETTKAVERG 36 (113)
T ss_dssp CSHHHHHHHHHHHHHH--HHSE---------EEESHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHH--HhCC---------ccccHHHHHHHHHcC
Confidence 5666666556555542 2343 567999999999875
No 6
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=32.88 E-value=23 Score=26.07 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=33.7
Q ss_pred HhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 56 RIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 56 rlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
--||||-.|...|=-.|.| ..-|..||..+..++++++.+
T Consensus 142 GGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~ 184 (241)
T d2pmka1 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 184 (241)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHH
Confidence 3699999999988877766 666889999999999998844
No 7
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=31.33 E-value=22 Score=26.19 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=34.1
Q ss_pred HhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 56 RIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 56 rlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
--|+||..+...|=.-|.| +.=|..||..++.+++.++.+
T Consensus 148 GGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~ 190 (230)
T d1l2ta_ 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190 (230)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 4699999999998876665 566899999999999999965
No 8
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.12 E-value=27 Score=25.80 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=34.6
Q ss_pred HhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhhc
Q 032208 56 RIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLKY 96 (145)
Q Consensus 56 rlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~KY 96 (145)
.-||||-.|...|=--|.| +--|..||..+..++++++.+.
T Consensus 154 GGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l 197 (251)
T d1jj7a_ 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 197 (251)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTC
T ss_pred hhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHH
Confidence 4699999999988777766 6668999999999999999664
No 9
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.97 E-value=37 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=13.2
Q ss_pred eeccchhhhHHhhhc
Q 032208 129 VKYGLNHVTYLIEQM 143 (145)
Q Consensus 129 lk~GiN~VT~LVE~~ 143 (145)
+..|+|+||..||.+
T Consensus 32 l~~G~~ev~k~i~~g 46 (125)
T d2ozba1 32 LRKGANEATKTLNRG 46 (125)
T ss_dssp EEESHHHHHHHHHHT
T ss_pred cccChHHHHHHHHcC
Confidence 568999999999975
No 10
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.02 E-value=19 Score=23.23 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=27.9
Q ss_pred cccccccccchhhHHHHHHHhhhcCcC----------CHHHHHHHHHHHHHHH
Q 032208 73 ALNQFTKTLDKNLASSLFKLLLKYRPE----------DRAAKKERLLKRAQAE 115 (145)
Q Consensus 73 aInQFt~~Ldk~~atqLfkLl~KYrPE----------tk~eKk~RL~~~Ae~k 115 (145)
.|+.|+.. .+...-+.-|+|.|+|+ +..+.-+.-...||..
T Consensus 22 ~V~nFs~s--w~DG~af~aLi~~~~P~~~~~~~l~~~~~~~~~~~a~~~ae~~ 72 (108)
T d1bkra_ 22 NIHNFTTS--WRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQH 72 (108)
T ss_dssp CCSSSSGG--GTTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHH
T ss_pred CcccCCCc--ccCcHHHHHHHHHHCcCcccHHhcccCCHHHHHHHHHHHHHHh
Confidence 57888864 45567799999999975 4555555555555543
No 11
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=23.19 E-value=37 Score=25.22 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=33.9
Q ss_pred HhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 56 RIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 56 rlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
.-||||..+...|=.-|.| +.=|..||..+..++++++..
T Consensus 143 GGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~ 185 (242)
T d1oxxk2 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHH
Confidence 4689999999999887776 566889999999999999954
No 12
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.97 E-value=36 Score=22.30 Aligned_cols=15 Identities=47% Similarity=0.399 Sum_probs=12.8
Q ss_pred eeccchhhhHHhhhc
Q 032208 129 VKYGLNHVTYLIEQM 143 (145)
Q Consensus 129 lk~GiN~VT~LVE~~ 143 (145)
+..|+|+|+..|+++
T Consensus 29 l~~G~~~v~k~l~~g 43 (119)
T d1vqof1 29 VKKGTNETTKSIERG 43 (119)
T ss_dssp EEESHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHcC
Confidence 567999999999875
No 13
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.82 E-value=42 Score=24.59 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 55 IRIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 55 irlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
-.-||||-.+...|-.-|.| +.-|..||.....+++.++.+
T Consensus 152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~ 195 (254)
T d1g6ha_ 152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 195 (254)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 45799999999999887776 667889999999999999843
No 14
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.16 E-value=35 Score=25.30 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhhc
Q 032208 57 IQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLKY 96 (145)
Q Consensus 57 lQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~KY 96 (145)
-||||-.|...|=-.|.| +.-|..||..+...+++.+.+.
T Consensus 158 Gq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l 200 (255)
T d2hyda1 158 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200 (255)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 589998888877655555 6668999999999999998553
No 15
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.09 E-value=38 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=31.5
Q ss_pred HhHHHHHHHHhhhcCCCcc---cccccccchhhHHHHHHHhhh
Q 032208 56 RIQRQRRILRQRLKVPPAL---NQFTKTLDKNLASSLFKLLLK 95 (145)
Q Consensus 56 rlQrQk~iL~krLKVPPaI---nQFt~~Ldk~~atqLfkLl~K 95 (145)
--||||-.|...|=-.|.| +.-|..||..+...+++++.+
T Consensus 155 GGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~ 197 (253)
T d3b60a1 155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197 (253)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHH
Confidence 3589998887776555544 777999999999999999854
Done!