BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032209
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 113/144 (78%), Gaps = 2/144 (1%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
V Q+++Q++D+ S++ EG++D QF QL +LQDE++P+FV EV SLFFDD+E+++ ++
Sbjct: 3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62
Query: 64 ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE 123
A++Q +DFK+VD+HVHQ KGSS+SIGA RVKN C+AFR+FC+ QN + C RCLQQV E
Sbjct: 63 AVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQE 122
Query: 124 YTMLKSKLQTLFRVS--VKACGNS 145
Y ++K+KL+TL R+ + A G S
Sbjct: 123 YLLVKNKLETLLRLEQQIVAAGGS 146
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 155 bits (391), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 108/137 (78%), Gaps = 1/137 (0%)
Query: 1 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
MD+V Q QK D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N
Sbjct: 6 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 64
Query: 61 MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
++ +L+Q VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E C RCLQQV
Sbjct: 65 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQV 124
Query: 121 SHEYTMLKSKLQTLFRV 137
EY ++K++L+TLF++
Sbjct: 125 KQEYYLVKNRLETLFKL 141
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 132 bits (331), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Query: 7 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
L+ Q SS++ +G VD+QF QL LQDE +P FV EV +LF DDA+++IN +A L
Sbjct: 6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66 EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYT 125
EQP V+F +VD++VHQLKGSS+S+GA +VK C+ FR FC ++R+GC+ L V +++
Sbjct: 66 EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125
Query: 126 MLKSKLQTLFRV 137
L++K QT+ ++
Sbjct: 126 DLRNKFQTMLQL 137
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
Query: 5 SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQ-DESSPDFVVEVASLFFDDAEKLINSMAR 63
+ L++Q SS++ G VD+QF QL LQ D +P FV EV +LF DDA+++I+ +A
Sbjct: 4 AALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAA 63
Query: 64 ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE 123
L+QP VDF +VD++VHQLKGSS+S+GA +VK C+ FR C +NR+GC+ L V +E
Sbjct: 64 LLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNE 123
Query: 124 YTMLKSKLQTLF 135
+ L++K QT+
Sbjct: 124 FYDLRNKFQTML 135
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 77 SHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNREGCMRCLQQVSHEYTMLKSKLQT 133
+++ L G+ ++I LR V F S CD QN++ R L+Q+ + M + +T
Sbjct: 40 ANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPET 99
Query: 134 LFRVSVKA 141
V+ A
Sbjct: 100 FLYVTSSA 107
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 52 DDAEKLINSMARALEQP------CVDF-KQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF 104
+D +K+++S + ++ P C D+ K+ + L+ + S+GA K++CI F+
Sbjct: 438 EDFQKILDS-GKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGA---KSLCIPFKPL 493
Query: 105 CDAQNREGCMRCLQQVSHEYTML 127
C+ Q C+ C + + YT+
Sbjct: 494 CELQPGAKCV-CGKNPAKYYTLF 515
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 19 YREGYVDDQFSQLHKLQDESSPDFVVEVA----SLFFDDAEKLI 58
Y GYVDD F QL K+ + S P+ A S F DA K +
Sbjct: 284 YFGGYVDDNFEQLVKVLEFSVPEQATLAANSIRSSFASDARKAV 327
>pdb|3KT4|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 333 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 361
>pdb|3KT7|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 26.2 bits (56), Expect = 7.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 333 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 361
>pdb|3KT1|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 26.2 bits (56), Expect = 7.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 333 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 361
>pdb|3MGU|A Chain A, Saccharomyces Cerevisiae Tpa1
Length = 644
Score = 25.8 bits (55), Expect = 8.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 352 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,603,873
Number of Sequences: 62578
Number of extensions: 118626
Number of successful extensions: 300
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 12
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)