Query 032209
Match_columns 145
No_of_seqs 105 out of 961
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 1.4E-32 4.9E-37 201.4 19.4 142 4-145 3-146 (153)
2 1yvi_A Histidine-containing ph 100.0 2.7E-29 9.2E-34 183.0 18.6 141 4-144 3-146 (149)
3 2r25_A Phosphorelay intermedia 99.9 7.7E-24 2.6E-28 156.4 13.1 117 17-136 2-164 (167)
4 2a0b_A HPT domain; sensory tra 99.9 2.8E-21 9.7E-26 136.1 11.1 118 16-137 4-121 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 1.6E-19 5.3E-24 126.9 13.6 114 19-137 1-115 (119)
6 3iqt_A Signal transduction his 99.8 7.5E-19 2.6E-23 124.1 12.2 110 21-135 12-122 (123)
7 1y6d_A Phosphorelay protein LU 99.7 4.8E-19 1.6E-23 124.5 1.3 105 28-134 14-118 (120)
8 2ooc_A Histidine phosphotransf 99.7 7E-17 2.4E-21 112.4 9.3 102 22-138 9-110 (113)
9 1sr2_A Putative sensor-like hi 99.7 3.4E-16 1.2E-20 109.5 9.3 86 40-127 30-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.5 3.5E-14 1.2E-18 96.8 9.2 90 43-134 3-103 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 6.9E-13 2.3E-17 95.0 7.1 89 44-134 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.3 2.4E-12 8.4E-17 92.9 7.7 90 43-134 5-105 (146)
13 2lch_A Protein OR38; structura 99.3 4.2E-12 1.5E-16 87.6 8.0 91 43-133 4-103 (113)
14 3kyj_A CHEA3, putative histidi 99.0 1.9E-09 6.6E-14 77.6 8.7 91 43-133 9-108 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 5.8E-08 2E-12 74.3 8.6 91 43-133 5-104 (225)
16 3ls0_A SLL1638 protein, PSBQ; 94.9 0.51 1.7E-05 33.0 10.5 78 51-137 32-128 (133)
17 3zsu_A TLL2057 protein, cyanoq 94.5 0.43 1.5E-05 33.3 9.4 77 51-136 30-124 (130)
18 1vyk_A Oxygen-evolving enhance 92.0 2.4 8.1E-05 30.2 10.7 76 51-128 52-145 (149)
19 3uo3_A J-type CO-chaperone JAC 86.6 2.5 8.5E-05 30.8 7.0 44 38-83 118-161 (181)
20 3bvo_A CO-chaperone protein HS 84.8 2.7 9.1E-05 31.3 6.5 42 40-83 150-191 (207)
21 3hho_A CO-chaperone protein HS 81.7 7 0.00024 28.0 7.5 39 43-83 118-156 (174)
22 1gp8_A Protein (scaffolding pr 77.6 5.8 0.0002 21.7 4.4 24 59-84 15-38 (40)
23 1fpo_A HSC20, chaperone protei 75.7 11 0.00038 26.9 7.0 39 43-83 114-152 (171)
24 3zta_A MTR, anti-sigma-factor 68.0 24 0.00081 23.6 6.6 68 5-89 56-123 (146)
25 2gyq_A YCFI, putative structur 59.2 22 0.00076 25.5 5.7 61 4-67 10-71 (173)
26 3zbh_A ESXA; unknown function, 56.6 32 0.0011 21.1 7.5 19 71-89 10-28 (99)
27 3kyj_A CHEA3, putative histidi 55.2 48 0.0016 22.8 8.0 12 71-82 62-73 (144)
28 2vs0_A Virulence factor ESXA; 54.6 34 0.0012 20.9 8.0 66 70-136 6-74 (97)
29 3gwk_C SAG1039, putative uncha 54.4 36 0.0012 21.1 8.0 64 70-134 8-74 (98)
30 2di0_A Activating signal coint 50.6 7.3 0.00025 24.2 1.6 44 20-63 9-52 (71)
31 4ioe_A Secreted protein ESXB; 49.9 41 0.0014 20.5 5.7 21 70-90 9-29 (93)
32 2p1h_A APAF-1, apoptotic prote 48.0 17 0.00059 22.8 3.2 62 15-80 28-90 (94)
33 3swf_A CGMP-gated cation chann 44.7 54 0.0019 20.3 6.2 44 90-138 1-44 (74)
34 2kjg_A Archaeal protein SSO690 39.6 61 0.0021 20.9 4.7 34 23-56 3-37 (99)
35 2f4m_B UV excision repair prot 35.9 38 0.0013 20.1 3.2 37 26-63 11-47 (61)
36 1wjt_A Transcription elongatio 30.9 34 0.0012 22.4 2.6 31 90-120 10-40 (103)
37 3nmd_A CGMP dependent protein 29.9 1E+02 0.0034 19.0 4.8 55 80-134 7-66 (72)
38 3tkl_B LIDA protein, substrate 29.8 1.8E+02 0.0061 21.9 7.2 60 28-91 68-127 (267)
39 2cw9_A Translocase of inner mi 29.7 35 0.0012 24.6 2.7 32 48-81 55-87 (194)
40 2lch_A Protein OR38; structura 29.4 44 0.0015 21.5 3.0 14 71-84 57-70 (113)
41 2r6a_C DNAG primase, helicase 29.1 1.2E+02 0.0041 19.6 5.4 46 71-119 87-132 (143)
42 3l9f_A Putative uncharacterize 28.5 1.4E+02 0.0049 21.5 6.0 56 8-64 110-166 (204)
43 3do9_A UPF0302 protein BA_1542 26.0 1.8E+02 0.0061 21.0 6.0 42 42-87 141-182 (188)
44 3ogh_B Protein YCIE; iron-bind 25.3 1.8E+02 0.0063 20.6 7.1 58 6-68 5-66 (171)
45 3fav_B ESAT-6, 6 kDa early sec 25.1 1.2E+02 0.0041 18.3 5.6 21 70-90 5-25 (94)
46 2p06_A Hypothetical protein AF 24.7 1.4E+02 0.0048 19.0 4.6 23 56-80 67-89 (114)
47 2lp4_A Chemotaxis protein CHEA 24.4 91 0.0031 22.7 4.3 31 5-35 21-51 (225)
48 2kr1_A Ubiquitin protein ligas 23.2 60 0.0021 20.5 2.6 20 126-145 23-42 (82)
49 2qsf_X RAD23, UV excision repa 23.2 1.2E+02 0.0042 21.6 4.6 38 25-63 32-69 (171)
50 3qk9_A Mitochondrial import in 23.1 54 0.0018 24.4 2.7 39 38-81 71-110 (222)
51 2qrw_A Hemoglobin-like protein 22.8 1.1E+02 0.0038 19.9 4.1 43 38-83 10-53 (128)
52 3tnf_B LIDA, RAS-related prote 22.4 2.5E+02 0.0086 22.1 6.4 59 28-90 51-109 (384)
53 3p9y_A CG14216, LD40846P; phos 22.2 66 0.0022 23.7 2.9 17 87-103 152-168 (198)
54 4h3k_B RNA polymerase II subun 21.8 93 0.0032 23.2 3.7 18 86-103 167-184 (214)
55 2ld6_A Chemotaxis protein CHEA 21.5 83 0.0028 21.1 3.3 32 4-35 17-48 (139)
56 2qf9_A Putative secreted prote 21.1 2.2E+02 0.0076 20.0 6.0 12 4-15 54-65 (179)
57 2ksc_A Cyanoglobin; hemeprotei 20.3 1.6E+02 0.0055 19.0 4.5 35 38-75 8-42 (123)
58 3f0n_A Mevalonate pyrophosphat 20.2 1.4E+02 0.0049 24.3 4.9 55 46-102 238-306 (414)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=1.4e-32 Score=201.39 Aligned_cols=142 Identities=54% Similarity=0.993 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (145)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (145)
+.+|+.++.+|+++++++|+||++|++|.+|.++++++|+.+++..|++++++.+..|+.++.++++|++.+..++|+||
T Consensus 3 ~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 82 (153)
T 3us6_A 3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFK 82 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999987669999999999999
Q ss_pred hhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCC
Q 032209 84 GSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS--VKACGNS 145 (145)
Q Consensus 84 Gss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~--~~~~~~~ 145 (145)
|+|+|+||.+|+.+|..||.+++.++.+.+...+++|+.+|.+++.+|++|++.. +.++|.+
T Consensus 83 Gss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~~~ 146 (153)
T 3us6_A 83 GSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGS 146 (153)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999 8888764
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.97 E-value=2.7e-29 Score=182.96 Aligned_cols=141 Identities=45% Similarity=0.821 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 032209 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESS-PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQL 82 (145)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~-~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 82 (145)
+.+|+.++.+++++++++|++|..|++|..|.++++ ++|+.+++..|++++++.+..|+.++..+++||..+..++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L 82 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 678999999999999999999977999999987888 9999999999999999999999999998645799999999999
Q ss_pred hhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccC
Q 032209 83 KGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS--VKACGN 144 (145)
Q Consensus 83 KGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~--~~~~~~ 144 (145)
||+|+|+||.+|+..|..||.+++.++.+.+...+.+++.+|.+++.+|+.|++.+ +..+|.
T Consensus 83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~~~ 146 (149)
T 1yvi_A 83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAYDP 146 (149)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998 777764
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.91 E-value=7.7e-24 Score=156.39 Aligned_cols=117 Identities=21% Similarity=0.390 Sum_probs=108.6
Q ss_pred hhhhcCCch-HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHH
Q 032209 17 SLYREGYVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRV 94 (145)
Q Consensus 17 ~~~~~~ild-~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGss~~lGa~~L 94 (145)
++.++|++| ++|++|+.|.+++ |+|+.+++..|++++++.+..|+.|+. .+ ||..+..++|+|||+|+++||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356788999 5999999998766 999999999999999999999999999 88 999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHH
Q 032209 95 KNVCIAFRSFCDAQN------------RE--------------------------------GCMRCLQQVSHEYTMLKSK 130 (145)
Q Consensus 95 ~~~c~~LE~a~~~~~------------~~--------------------------------~~~~~l~~L~~~~~~l~~~ 130 (145)
..+|..||.+++.++ .+ .+...+++++.+|..++.+
T Consensus 79 ~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~ 158 (167)
T 2r25_A 79 AWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIE 158 (167)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 43 5678999999999999999
Q ss_pred HHHHHH
Q 032209 131 LQTLFR 136 (145)
Q Consensus 131 L~~~l~ 136 (145)
|+.|++
T Consensus 159 L~~~~~ 164 (167)
T 2r25_A 159 LSKYYN 164 (167)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 999986
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.86 E-value=2.8e-21 Score=136.13 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=104.5
Q ss_pred hhhhhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHH
Q 032209 16 SSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVK 95 (145)
Q Consensus 16 ~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~ 95 (145)
+++.+.+++|.. .|..|....|++++.+++..|++++++.+..|..++..+ |+..+.+.+|+|||+|+++|+..|+
T Consensus 4 ~~~~~~~~lD~~--~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~ 79 (125)
T 2a0b_A 4 ENSKSEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ 79 (125)
T ss_dssp --CHHHHHSCHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccccCCHH--HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566778854 444455556899999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 96 NVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRV 137 (145)
Q Consensus 96 ~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~ 137 (145)
.+|..+|..++.++.+.....+..|...|.++...|+.|+..
T Consensus 80 ~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 121 (125)
T 2a0b_A 80 QLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 121 (125)
T ss_dssp HHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988888899999999999999999998864
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.83 E-value=1.6e-19 Score=126.88 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=100.4
Q ss_pred hhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHH
Q 032209 19 YREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98 (145)
Q Consensus 19 ~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c 98 (145)
+|..++|-. ....+ ..|+++++.+++..|+++.|+++..|+.++..+ ||+.+...+|+|||+|+++|+.+|..+|
T Consensus 1 ~~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 355666633 22222 478999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 99 IAFRSFCDAQN-REGCMRCLQQVSHEYTMLKSKLQTLFRV 137 (145)
Q Consensus 99 ~~LE~a~~~~~-~~~~~~~l~~L~~~~~~l~~~L~~~l~~ 137 (145)
..||.+++.+. .+.+...+..+.+++..+..+++.|+..
T Consensus 76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999985 4678889999999999999999999874
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.80 E-value=7.5e-19 Score=124.13 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=97.4
Q ss_pred cCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 032209 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA 100 (145)
Q Consensus 21 ~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~ 100 (145)
.+++|-. .+..+ ..|+++++.+++..|+++.++++..|+.++..+ ||+.+...+|+|||+|+++|+.+|..+|..
T Consensus 12 ~~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3456633 33222 478999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 101 FRSFCDAQNR-EGCMRCLQQVSHEYTMLKSKLQTLF 135 (145)
Q Consensus 101 LE~a~~~~~~-~~~~~~l~~L~~~~~~l~~~L~~~l 135 (145)
||.+++.++. +.+...+..|.+++..+..+.+.|+
T Consensus 87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999854 4788899999999999999999886
No 7
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.73 E-value=4.8e-19 Score=124.53 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=88.6
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhh
Q 032209 28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDA 107 (145)
Q Consensus 28 ~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~ 107 (145)
|.++..|....+++++.+++..|++++++.+..|..+.... |+..+.+.+|+|||+|+++|+..|+.+|..+|..+|.
T Consensus 14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~ 91 (120)
T 1y6d_A 14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 91 (120)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence 34777778778899999999999999999999999987777 8899999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 108 QNREGCMRCLQQVSHEYTMLKSKLQTL 134 (145)
Q Consensus 108 ~~~~~~~~~l~~L~~~~~~l~~~L~~~ 134 (145)
|+...+......+.+.+.+....++.+
T Consensus 92 g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 92 NQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred CChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 877754444555666666666666554
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.70 E-value=7e-17 Score=112.36 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=85.8
Q ss_pred CCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHH
Q 032209 22 GYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAF 101 (145)
Q Consensus 22 ~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~L 101 (145)
+.+|-. .|..+ ..++++|+.+++..|++++++.+..|..+ .. || ...+|+|||+|+++||.++..+|..|
T Consensus 9 ~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~l 78 (113)
T 2ooc_A 9 GAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCERC 78 (113)
T ss_dssp CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 456633 44443 47899999999999999999999999988 45 77 89999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 102 RSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS 138 (145)
Q Consensus 102 E~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~ 138 (145)
|..++. ....+..|..++..+..+|..++..+
T Consensus 79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~~ 110 (113)
T 2ooc_A 79 EAGQES-----LEGVRTALDAALLDIAAYAHEQALRS 110 (113)
T ss_dssp HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998876 45567888999999998888877654
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.66 E-value=3.4e-16 Score=109.45 Aligned_cols=86 Identities=15% Similarity=0.263 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 032209 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQ 119 (145)
Q Consensus 40 ~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~ 119 (145)
+..-.+++..|+++.++++..|..++..+ ||..++..+|+|||+++++|++.++.+|.+||.+++.++...+...+..
T Consensus 30 ~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~~ 107 (116)
T 1sr2_A 30 QLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISD 107 (116)
T ss_dssp HHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567799999999999999999999999 9999999999999999999999999999999999999998888777777
Q ss_pred HHHHHHHH
Q 032209 120 VSHEYTML 127 (145)
Q Consensus 120 L~~~~~~l 127 (145)
|...+.++
T Consensus 108 L~~~l~~L 115 (116)
T 1sr2_A 108 IDSYVKSL 115 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766654
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.54 E-value=3.5e-14 Score=96.81 Aligned_cols=90 Identities=13% Similarity=0.269 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHH
Q 032209 43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNRE 111 (145)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~ 111 (145)
+.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+..+|..+|..+ +.++.+
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~ 80 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999985 34 67899999999999999999999999999999876 566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032209 112 GCMRCLQQVSHEYTMLKSKLQTL 134 (145)
Q Consensus 112 ~~~~~l~~L~~~~~~l~~~L~~~ 134 (145)
.....+..+...+..+...++.+
T Consensus 81 ~~~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 81 ITSDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 66667788888888877776543
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.39 E-value=6.9e-13 Score=95.04 Aligned_cols=89 Identities=13% Similarity=0.266 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHH
Q 032209 44 VEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREG 112 (145)
Q Consensus 44 ~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~ 112 (145)
.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+.++|..+|... +.+....
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~ 80 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI 80 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999999999983 45 78999999999999999999999999999999865 5665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032209 113 CMRCLQQVSHEYTMLKSKLQTL 134 (145)
Q Consensus 113 ~~~~l~~L~~~~~~l~~~L~~~ 134 (145)
....+..+...+..+...++..
T Consensus 81 ~~~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 81 TSDLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777666666554
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.34 E-value=2.4e-12 Score=92.89 Aligned_cols=90 Identities=13% Similarity=0.281 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HhhcCHH
Q 032209 43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNRE 111 (145)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~~~ 111 (145)
+.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+.++|..+|.. .+.+...
T Consensus 5 ~~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~ 82 (146)
T 1i5n_A 5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQ 82 (146)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 357899999999999999999982 23 4689999999999999999999999999999987 5666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032209 112 GCMRCLQQVSHEYTMLKSKLQTL 134 (145)
Q Consensus 112 ~~~~~l~~L~~~~~~l~~~L~~~ 134 (145)
.....+..+...+..+...++.+
T Consensus 83 ~~~~l~~~l~~~~D~l~~~l~~~ 105 (146)
T 1i5n_A 83 LNTDIINLFLETKDIMQEQLDAY 105 (146)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555665555555443
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.33 E-value=4.2e-12 Score=87.62 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-----C-CCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HhhcCHHHH
Q 032209 43 VVEVASLFFDDAEKLINSMARALEQ-----P-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNREGC 113 (145)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~~-----~-~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~~~~~ 113 (145)
+.+++..|++++++.+..|.+++.. . .-++..+.+.+|+|||+|+++|+..+.++|..+|.. .+.+.....
T Consensus 4 ~~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~ 83 (113)
T 2lch_A 4 HQEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKIT 83 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4578999999999999999988732 1 003567999999999999999999999999999964 456655555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032209 114 MRCLQQVSHEYTMLKSKLQT 133 (145)
Q Consensus 114 ~~~l~~L~~~~~~l~~~L~~ 133 (145)
...+..+...+..+...++.
T Consensus 84 ~~l~~~l~~~~d~l~~~l~~ 103 (113)
T 2lch_A 84 SDLIDKVKKKLDMVTRELDK 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777666653
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=98.99 E-value=1.9e-09 Score=77.60 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHHH
Q 032209 43 VVEVASLFFDDAEKLINSMARALEQ---PCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREGC 113 (145)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~~ 113 (145)
+.+++..|++++++.+..|...+.. ++.| ...+.+.+|+|||+|+++|+..+.++|..+|... +.+...-.
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5689999999999999999887642 2113 4679999999999999999999999999999765 45533322
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032209 114 MRCLQQVSHEYTMLKSKLQT 133 (145)
Q Consensus 114 ~~~l~~L~~~~~~l~~~L~~ 133 (145)
...+..+...+..+...++.
T Consensus 89 ~~l~dlll~~~D~l~~lv~~ 108 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEE 108 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444454444444443
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.70 E-value=5.8e-08 Score=74.28 Aligned_cols=91 Identities=14% Similarity=0.282 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHHH
Q 032209 43 VVEVASLFFDDAEKLINSMARALEQ---PCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREGC 113 (145)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~~ 113 (145)
+.+++..|++++.+.+..|.+.+.. ++.| ...+.+.+|+|||+|+++|+..+.++|..+|... +.+...--
T Consensus 5 ~~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~ 84 (225)
T 2lp4_A 5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLN 84 (225)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3468899999999999999887633 2223 4678899999999999999999999999999765 44433322
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032209 114 MRCLQQVSHEYTMLKSKLQT 133 (145)
Q Consensus 114 ~~~l~~L~~~~~~l~~~L~~ 133 (145)
...+.-+...+..+...++.
T Consensus 85 ~~~~~ll~~~~D~l~~~l~~ 104 (225)
T 2lp4_A 85 TDIINLFLETKDIMQEQLDA 104 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544443
No 16
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=94.88 E-value=0.51 Score=33.05 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=51.5
Q ss_pred HHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhhhhh--------hhh----------ChHHHHHHHHHHHHHHhhcCHH
Q 032209 51 FDDAEKLINS-MARALEQPCVDFKQVDSHVHQLKGSS--------SSI----------GALRVKNVCIAFRSFCDAQNRE 111 (145)
Q Consensus 51 ~~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGss--------~~l----------Ga~~L~~~c~~LE~a~~~~~~~ 111 (145)
+.++.+.+.. |...+..+ ||..++.+.|.-=|.. .++ =+..|.+....|..+++.+|..
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~ 109 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGS 109 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3456778899 99999999 9999999999654432 222 1234555556666777777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 112 GCMRCLQQVSHEYTMLKSKLQTLFRV 137 (145)
Q Consensus 112 ~~~~~l~~L~~~~~~l~~~L~~~l~~ 137 (145)
.+.. .|......+++|+++
T Consensus 110 ~a~k-------~Y~~a~adfdafl~l 128 (133)
T 3ls0_A 110 QAKI-------QYQEALADFDSFLNL 128 (133)
T ss_dssp HHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHh
Confidence 5544 555555566666543
No 17
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=94.52 E-value=0.43 Score=33.29 Aligned_cols=77 Identities=4% Similarity=0.095 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhh--------h----------ChHHHHHHHHHHHHHHhhcCHHH
Q 032209 51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS--------I----------GALRVKNVCIAFRSFCDAQNREG 112 (145)
Q Consensus 51 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~--------l----------Ga~~L~~~c~~LE~a~~~~~~~~ 112 (145)
+.++.+.+..|...+..+ ||..++.+.|.-=|..+. + =+..|.+....|..+++.+|...
T Consensus 30 i~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~ 107 (130)
T 3zsu_A 30 IEKNAERFADLEVSVAKG--DWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTV 107 (130)
T ss_dssp HHHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhc--chHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 345678889999999999 999999999975554321 1 13455666667777787777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 113 CMRCLQQVSHEYTMLKSKLQTLFR 136 (145)
Q Consensus 113 ~~~~l~~L~~~~~~l~~~L~~~l~ 136 (145)
+.. .|..+...+++|++
T Consensus 108 a~k-------~Y~~a~adfdafl~ 124 (130)
T 3zsu_A 108 AQE-------GFREAEADFKAYLN 124 (130)
T ss_dssp HHH-------HHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHH
Confidence 554 45555555555554
No 18
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=92.02 E-value=2.4 Score=30.15 Aligned_cols=76 Identities=4% Similarity=-0.003 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh--------hhhhhC----------hHHHHHHHHHHHHHHhhcCHHH
Q 032209 51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQLKG--------SSSSIG----------ALRVKNVCIAFRSFCDAQNREG 112 (145)
Q Consensus 51 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG--------ss~~lG----------a~~L~~~c~~LE~a~~~~~~~~ 112 (145)
+.++.+.+..++..+..+ +|..++...|.=-| ...++. +..|++....|..+++..+...
T Consensus 52 Ik~~a~~i~~vk~lI~k~--~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~ 129 (149)
T 1vyk_A 52 AKVSASEILNVKQFIDRK--AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE 129 (149)
T ss_dssp HHHHHHHHHTTHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344566678889999999 99999999886332 222222 2557777778888888888777
Q ss_pred HHHHHHHHHHHHHHHH
Q 032209 113 CMRCLQQVSHEYTMLK 128 (145)
Q Consensus 113 ~~~~l~~L~~~~~~l~ 128 (145)
+...+......|..+.
T Consensus 130 a~~~Y~~t~~~ld~vl 145 (149)
T 1vyk_A 130 AEKYYGQTVSNINEVL 145 (149)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665555444444443
No 19
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=86.62 E-value=2.5 Score=30.76 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=26.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209 38 SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (145)
Q Consensus 38 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (145)
.+.+-+.++..............|.+++..+ ||+.+...+.+||
T Consensus 118 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 118 DDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK 161 (181)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 3444455555555555566666666666666 7776666666654
No 20
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=84.83 E-value=2.7 Score=31.26 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (145)
Q Consensus 40 ~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (145)
.+-+.++-..+.....+.+..|.+++..+ ||..+...+.+||
T Consensus 150 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 150 EAAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 33355555555555555566677777777 7877777777765
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=81.75 E-value=7 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209 43 VVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (145)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (145)
+..+....-......+..|..++..+ ||..+...+.+||
T Consensus 118 l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 156 (174)
T 3hho_A 118 LVAFDTKVTAMQRHYLAQLQGQLAQS--EWLAAADQIRKLK 156 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 44444444444444444555555555 5555555544443
No 22
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=77.58 E-value=5.8 Score=21.70 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 032209 59 NSMARALEQPCVDFKQVDSHVHQLKG 84 (145)
Q Consensus 59 ~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (145)
.+|--|++.+ |++++..+=|+||+
T Consensus 15 QqiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 15 KQMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 4577788899 99999999999986
No 23
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=75.73 E-value=11 Score=26.88 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209 43 VVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (145)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (145)
+..+....-......+..|..++..+ ||+.+...+.+||
T Consensus 114 l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 114 LESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR 152 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence 33333333333334444455555555 5555555555543
No 24
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=68.05 E-value=24 Score=23.62 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhhhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 032209 5 SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKG 84 (145)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (145)
+.|+++..+...-|+.+|+-=+++. | .+..+++.|+.-..++.-.++.+. .|-+. -.-|-+||
T Consensus 56 selekeiadkvkimfaqgyhievlq-l----------ilekildsfisvireqyhdlqaaa-----syitt-vrdhifkg 118 (146)
T 3zta_A 56 SELEKEIADKVKIMFAQGYHIEVLQ-L----------ILEKILDSFISVIREQYHDLQAAA-----SYITT-VRDHIFKG 118 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHH-H----------HHHHHHHHHHHHHHHHCCCHHHHH-----HHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHH-H----------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHhcc
Confidence 4567777777777777776555431 1 256678888887777655554431 12111 12488899
Q ss_pred hhhhh
Q 032209 85 SSSSI 89 (145)
Q Consensus 85 ss~~l 89 (145)
.|-.+
T Consensus 119 tsfll 123 (146)
T 3zta_A 119 TSFLL 123 (146)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 87544
No 25
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=59.25 E-value=22 Score=25.47 Aligned_cols=61 Identities=10% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhhhcCCchHH-HHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032209 4 VSQLQKQFIDFSSSLYREGYVDDQ-FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQ 67 (145)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ild~~-~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~ 67 (145)
++.|+..+.+|++.+..- +.+ ...|..|...-...-+...+..++++...++..|++.++.
T Consensus 10 ~~~l~dlf~~~L~Diy~a---E~q~~~aL~~~~~~a~~p~Lk~~l~~H~~eT~~qi~rLe~i~~~ 71 (173)
T 2gyq_A 10 IQTMEDLLLHGLRDIYYA---EQQITKALPKMIEQATNRDLSQGLTSHLEETQKQIERLDQVFKK 71 (173)
T ss_dssp BCSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999988765 111 3344444443333558889999999999999999988755
No 26
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=56.60 E-value=32 Score=21.14 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHhhhhhhhh
Q 032209 71 DFKQVDSHVHQLKGSSSSI 89 (145)
Q Consensus 71 D~~~l~~~aH~LKGss~~l 89 (145)
|++.+...+-.++..+..+
T Consensus 10 ~~~~l~~~A~~~~~~~~~i 28 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNV 28 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 27
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=55.19 E-value=48 Score=22.76 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHh
Q 032209 71 DFKQVDSHVHQL 82 (145)
Q Consensus 71 D~~~l~~~aH~L 82 (145)
.+..+..++|.+
T Consensus 62 G~~~i~~laH~l 73 (144)
T 3kyj_A 62 GLSVVESRAHLC 73 (144)
T ss_dssp TCHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 355555555554
No 28
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=54.65 E-value=34 Score=20.91 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 70 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNREGCMRCLQQVSHEYTMLKSKLQTLFR 136 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~ 136 (145)
+|++.+...+-.+++.++.+-.. +..+...+... =.....+.+...+.+....+..+...|..+-.
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~-l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~ 74 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQI-LSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQ 74 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888887776432 23333333322 12234455666666777777666666665543
No 29
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=54.44 E-value=36 Score=21.08 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 70 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREGCMRCLQQVSHEYTMLKSKLQTL 134 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~~~~~l~~L~~~~~~l~~~L~~~ 134 (145)
++++.+...|-.++..+..+-.. +..+...+.... .....+.+...+.+....+..+...|+.+
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~-l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i 74 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEV-LNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDI 74 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655321 122222232221 12233455555555555555555555544
No 30
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.63 E-value=7.3 Score=24.17 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=35.6
Q ss_pred hcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (145)
Q Consensus 20 ~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 63 (145)
+...+++..+++.+|.-+-+..|+..++..|=.+++..+..|-+
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 33445677888888887889999999999999999888887754
No 31
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=49.91 E-value=41 Score=20.46 Aligned_cols=21 Identities=5% Similarity=0.166 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHhhhhhhhhC
Q 032209 70 VDFKQVDSHVHQLKGSSSSIG 90 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lG 90 (145)
+|++.+...|-.+++.+..+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~ 29 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQ 29 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666555553
No 32
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=48.01 E-value=17 Score=22.81 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=31.0
Q ss_pred HhhhhhcCCchHHHHHHHhhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 032209 15 SSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80 (145)
Q Consensus 15 ~~~~~~~~ild~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH 80 (145)
...+...+++.+. ..+.+.. .+..+-...+++....-.+.-...+..++... ++..++...+
T Consensus 28 ld~L~~~~vlt~~--~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~L~ 90 (94)
T 2p1h_A 28 MDHMISDGFLTIS--EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAALLH 90 (94)
T ss_dssp HHHHHHHTSSCHH--HHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHHHG
T ss_pred HHHHHHCCCCCHH--HHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHHHh
Confidence 3344445555533 2222332 23445566666665555556666666666555 5555555443
No 33
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=44.72 E-value=54 Score=20.34 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 90 GALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS 138 (145)
Q Consensus 90 Ga~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~ 138 (145)
||..+-+-+..||... +.+...+.+|..+|...+..|..-+...
T Consensus 1 ~~~dlEEKv~~LE~sl-----d~LQTrfARLLaEy~ssQ~KLKqRit~L 44 (74)
T 3swf_A 1 GAMGLEEKVTRMESSV-----DLLQTRFARILAEYESMQQKLKQRLTKV 44 (74)
T ss_dssp ---CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555443 3667777888888888877776554443
No 34
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=39.62 E-value=61 Score=20.92 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=26.7
Q ss_pred Cch-HHHHHHHhhhccCChHHHHHHHHHHHHHHHH
Q 032209 23 YVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEK 56 (145)
Q Consensus 23 ild-~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~ 56 (145)
++| +.|-+|+.++...|.+.+..+++..-.++..
T Consensus 3 vLdqeEFveLrkfKgkvd~~~v~~IL~eiE~~~rk 37 (99)
T 2kjg_A 3 ILEDPEFVKLRQFKGKVNFNLVMQILDEIELDLRG 37 (99)
T ss_dssp SCSCHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 566 7899999999888888888888777766654
No 35
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=35.90 E-value=38 Score=20.13 Aligned_cols=37 Identities=14% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 26 DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (145)
Q Consensus 26 ~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 63 (145)
.+|.+|+.+- ..+|+.+..++...-.+.|+.+..|.+
T Consensus 11 Pqf~~lR~~v-q~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 11 PQFQQMRQII-QQNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHH-HHCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHH-HHCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 5788887765 568998999988888888887777654
No 36
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=30.95 E-value=34 Score=22.43 Aligned_cols=31 Identities=10% Similarity=0.226 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 032209 90 GALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120 (145)
Q Consensus 90 Ga~~L~~~c~~LE~a~~~~~~~~~~~~l~~L 120 (145)
....+..+...|+.++...+.+.+...+..|
T Consensus 10 ~e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L 40 (103)
T 1wjt_A 10 LEEELLRIAKKLEKMVSRKKTEGALDLLKKL 40 (103)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456667777777766544545555555554
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.89 E-value=1e+02 Score=19.00 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=24.7
Q ss_pred HHhhhhhhhhChHHHHHHHHHHHHHH-----hhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 80 HQLKGSSSSIGALRVKNVCIAFRSFC-----DAQNREGCMRCLQQVSHEYTMLKSKLQTL 134 (145)
Q Consensus 80 H~LKGss~~lGa~~L~~~c~~LE~a~-----~~~~~~~~~~~l~~L~~~~~~l~~~L~~~ 134 (145)
|--.|.++.-|...+.++=..|+..- +..-.......+.+....+..++..|++|
T Consensus 7 ~~~~~~~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 7 HHHHGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666555555555444443221 22234455566777777777777777776
No 38
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=29.79 E-value=1.8e+02 Score=21.90 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhCh
Q 032209 28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGA 91 (145)
Q Consensus 28 ~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa 91 (145)
|.++..+.....++-+.+.+..|-.+++ .+++|.+.. .+ |-++...+.|+=+|--..+.-
T Consensus 68 F~~~sd~yeal~~e~ine~i~~~~~~se-~~T~imEs~-p~--DeeEa~kLlhKh~~~~~KlaN 127 (267)
T 3tkl_B 68 FEKLLTDSEELSLSEINEKMKAFSKDSE-KLTQLMEKH-KG--DEKTVQSLQREHHDIKAKLAN 127 (267)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHT-TT--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhhhcCHHHHHHHHHHHHhhhH-HHHHHHhcC-cc--cHHHHHHHHHHhcccchhhhh
Confidence 5566555567789999999999998874 456666665 55 899999999998776555433
No 39
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=29.66 E-value=35 Score=24.60 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHH
Q 032209 48 SLFFDDAEKL-INSMARALEQPCVDFKQVDSHVHQ 81 (145)
Q Consensus 48 ~~F~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~ 81 (145)
..|+..+... +..+..|..++ |.+.|+.++..
T Consensus 55 ~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~t~ 87 (194)
T 2cw9_A 55 DRFLKQCENDIIPNVLEAMISG--ELDILKDWCYE 87 (194)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhcCH
Confidence 6788888887 69999999999 99999988653
No 40
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=29.43 E-value=44 Score=21.52 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHhhh
Q 032209 71 DFKQVDSHVHQLKG 84 (145)
Q Consensus 71 D~~~l~~~aH~LKG 84 (145)
.+..+..++|.+-.
T Consensus 57 G~~~l~~lah~~E~ 70 (113)
T 2lch_A 57 GFSSVAKVLHTIMN 70 (113)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 46666677776543
No 41
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=29.08 E-value=1.2e+02 Score=19.63 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 032209 71 DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQ 119 (145)
Q Consensus 71 D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~ 119 (145)
....+..++..+|-.+- ..++..++..+..+...++.+.......+
T Consensus 87 ~~~~i~~y~~~v~~~~~---~r~l~~~~~~i~~~~~~~d~~~~l~~~~e 132 (143)
T 2r6a_C 87 SEQELEDYIRHVLNRPK---WLMLKVKEQEKTEAERRKDFLTAARIAKE 132 (143)
T ss_dssp CHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56778888888887664 47778888888888887777766544444
No 42
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=28.49 E-value=1.4e+02 Score=21.54 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhhcCCch-HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 8 QKQFIDFSSSLYREGYVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARA 64 (145)
Q Consensus 8 ~~~~~~~~~~~~~~~ild-~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a 64 (145)
++.+.+|...+.+++... +-+-.|. +....+++-+.++++..++...+.+..++..
T Consensus 110 r~~l~~~l~~~~~~~~~~~~f~~kl~-f~~~l~~~~~~~~L~~~~~~~~~~l~~l~~~ 166 (204)
T 3l9f_A 110 KKELASYLQSDVNDEIFKSDFLMRLF-FGNSLNDDDLEQLIREEIERKEEKIKRLSEN 166 (204)
T ss_dssp HHHHHHHHHSCCCCCEEECHHHHHHH-TCSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666655443 3333442 2346778889999999999999888888654
No 43
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=25.98 E-value=1.8e+02 Score=21.04 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhh
Q 032209 42 FVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87 (145)
Q Consensus 42 ~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~ 87 (145)
++.+.+..|..+ +...+|..|+..+ |-+....+...||---|
T Consensus 141 ~l~~~~~~~~~~--~L~~~ID~ALd~~--D~e~F~~Lt~~L~~~~~ 182 (188)
T 3do9_A 141 FLEESVFSFRRE--RLLKQIDEALDKQ--DKEAFHRLTAELKMLEG 182 (188)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHTT--CHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHhhc
Confidence 344445555444 7789999999999 99999999998875443
No 44
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=25.32 E-value=1.8e+02 Score=20.58 Aligned_cols=58 Identities=10% Similarity=0.197 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhhhcCCchHH--HHHHHhhhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032209 6 QLQKQFIDFSSSLYREGYVDDQ--FSQLHKLQDE--SSPDFVVEVASLFFDDAEKLINSMARALEQP 68 (145)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ild~~--~~~L~~L~~~--~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~ 68 (145)
+++..|.+|++.+..- +. ...|..|... .+|+ +...+..=+++...++..|++.+..-
T Consensus 5 ~~~dlfi~~L~Diy~a----E~Q~~~aL~~ma~~~a~~pe-Lk~a~e~Hl~eT~~qi~rLe~vf~~l 66 (171)
T 3ogh_B 5 NRIEHYHDWLRDAHAM----EKQAESMLESMASRIDNYPE-LRARIEQHLSETKNQIVQLETILDRN 66 (171)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999988766 32 3455555533 4454 77888888999999999999888764
No 45
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=25.10 E-value=1.2e+02 Score=18.33 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHhhhhhhhhC
Q 032209 70 VDFKQVDSHVHQLKGSSSSIG 90 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lG 90 (145)
+|+..+...+-.+.+.++.+.
T Consensus 5 v~~~~l~~~a~~~~~~~~~i~ 25 (94)
T 3fav_B 5 WNFAGIEAAASAIQGNVTSIH 25 (94)
T ss_dssp ----CHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777666553
No 46
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=24.67 E-value=1.4e+02 Score=19.01 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH
Q 032209 56 KLINSMARALEQPCVDFKQVDSHVH 80 (145)
Q Consensus 56 ~~l~~L~~a~~~~~~D~~~l~~~aH 80 (145)
+.+..|+++++.. ||+.+++..-
T Consensus 67 eemdelreaveke--dwenlrdell 89 (114)
T 2p06_A 67 EEMDELREAVEKE--DWENLRDELL 89 (114)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3456789999999 9999987653
No 47
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=24.45 E-value=91 Score=22.74 Aligned_cols=31 Identities=10% Similarity=0.323 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhhhcCCchHHHHHHHhhh
Q 032209 5 SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQ 35 (145)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~ 35 (145)
.+++..+.+|-+...|...++..|..++.|+
T Consensus 21 ~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlK 51 (225)
T 2lp4_A 21 ADMEQHLLDLVPESPDAEQLNAIFRAAHSIK 51 (225)
T ss_dssp HHHHHHHHHCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence 3444444444444444444555555555544
No 48
>2kr1_A Ubiquitin protein ligase E3A; UBL conjugation pathway, structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Homo sapiens}
Probab=23.25 E-value=60 Score=20.51 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 032209 126 MLKSKLQTLFRVSVKACGNS 145 (145)
Q Consensus 126 ~l~~~L~~~l~~~~~~~~~~ 145 (145)
.++..++.|+....+-|||+
T Consensus 23 ~~k~lIerYf~QLt~GCg~~ 42 (82)
T 2kr1_A 23 AAKHLIERYYHQLTEGCGNE 42 (82)
T ss_dssp HHHHHHHHHHHHHHTCCSCS
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 45667789999999999984
No 49
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=23.23 E-value=1.2e+02 Score=21.62 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=28.3
Q ss_pred hHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 032209 25 DDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (145)
Q Consensus 25 d~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 63 (145)
+++|.+|+.+- ..+|.++..+|...-.+.|..+..|.+
T Consensus 32 ~Pqf~qlRq~v-qqNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 32 VEDLLSLRQVV-SGNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHHH-HTCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHHH-HHCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 37788887765 678998888888777777776666544
No 50
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=23.12 E-value=54 Score=24.42 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHH
Q 032209 38 SSPDFVVEVASLFFDDAEKL-INSMARALEQPCVDFKQVDSHVHQ 81 (145)
Q Consensus 38 ~~~~~~~~ll~~F~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~ 81 (145)
-||.|- ...|+..+.+. +..+..|+..+ |.+.|+.+++.
T Consensus 71 ~DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~llse 110 (222)
T 3qk9_A 71 MDPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKWFSE 110 (222)
T ss_dssp ----CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH
T ss_pred hCCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcCH
Confidence 345552 25677777777 56789999999 99999998764
No 51
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=22.82 E-value=1.1e+02 Score=19.92 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhh
Q 032209 38 SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQV-DSHVHQLK 83 (145)
Q Consensus 38 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l-~~~aH~LK 83 (145)
|+.+-+..+++.|.+.+..+ ..|....... ||+.. ..++-.+.
T Consensus 10 GG~~~i~~lv~~FY~~v~~d-p~l~~~F~~~--d~~~~~~~l~~fl~ 53 (128)
T 2qrw_A 10 GGAKTFDAIVSRFYAQVAED-EVLRRVYPED--DLAGAEERLRMFLE 53 (128)
T ss_dssp TTHHHHHHHHHHHHHHHHHC-HHHHHHSCCS--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhC-HHHHHhccCC--CHHHHHHHHHHHHH
Confidence 67888999999999998875 6688888766 77653 34444443
No 52
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=22.37 E-value=2.5e+02 Score=22.08 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=43.7
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhC
Q 032209 28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIG 90 (145)
Q Consensus 28 ~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lG 90 (145)
|.++..+.....++-+.+.+..|-.+. +.+++|.+.. .+ |-++...+.|+=+|--..+.
T Consensus 51 F~~~sd~yeal~~e~ine~ie~l~~~~-e~~T~imEs~-p~--DeeEa~kLlhKh~~~~~Kla 109 (384)
T 3tnf_B 51 FEKLLTDSEELSLSEINEKMEAFSKDS-EKLTQLMEKH-KG--DEKTVQSLQREHHDIKAKLA 109 (384)
T ss_dssp SHHHHTTCCCCCHHHHHHHHHHHHHHH-HHHHHHHTTS-TT--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhhhcCHHHHHHHHHHHHhhh-HHHHHHHhcC-cc--cHHHHHHHHHhhcccchhhh
Confidence 556666666788999999999996665 4566665554 44 89999999999877655543
No 53
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=22.18 E-value=66 Score=23.72 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=15.5
Q ss_pred hhhChHHHHHHHHHHHH
Q 032209 87 SSIGALRVKNVCIAFRS 103 (145)
Q Consensus 87 ~~lGa~~L~~~c~~LE~ 103 (145)
+.+|+..+.++|+.|+.
T Consensus 152 A~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999999996
No 54
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=21.76 E-value=93 Score=23.17 Aligned_cols=18 Identities=17% Similarity=0.552 Sum_probs=15.6
Q ss_pred hhhhChHHHHHHHHHHHH
Q 032209 86 SSSIGALRVKNVCIAFRS 103 (145)
Q Consensus 86 s~~lGa~~L~~~c~~LE~ 103 (145)
-+.+||..+.++|+.||.
T Consensus 167 eA~~Ga~~ileL~~~le~ 184 (214)
T 4h3k_B 167 EATLGAFLICELCQCIQH 184 (214)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356899999999999985
No 55
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=21.49 E-value=83 Score=21.15 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhcCCchHHHHHHHhhh
Q 032209 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQ 35 (145)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~ 35 (145)
+.+|+..+.+|.+.+.+...++..|.....|+
T Consensus 17 L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLK 48 (139)
T 2ld6_A 17 LQNLNDTLLELEKNPEDMELINEAFRALHTLK 48 (139)
T ss_dssp HHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 44444555555444444444555555555554
No 56
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=21.08 E-value=2.2e+02 Score=20.01 Aligned_cols=12 Identities=0% Similarity=-0.180 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 032209 4 VSQLQKQFIDFS 15 (145)
Q Consensus 4 ~~~~~~~~~~~~ 15 (145)
|..++.-+.+|-
T Consensus 54 i~~m~~~l~~~g 65 (179)
T 2qf9_A 54 RGMMIGWLDLWA 65 (179)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 556666666664
No 57
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=20.30 E-value=1.6e+02 Score=18.98 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 032209 38 SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQV 75 (145)
Q Consensus 38 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l 75 (145)
|+++-+..+++.|.+.+..+ +.|....... ||+..
T Consensus 8 Gg~~~i~~lv~~FY~~v~~D-p~l~~~F~~~--d~~~~ 42 (123)
T 2ksc_A 8 GGAAAVDLAVEKFYGKVLAD-ERVNRFFVNT--DMAKQ 42 (123)
T ss_dssp CCSHHHHHHHHHHHHHHHHC-HHHHTGGGSS--CHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcC-HHHHHhcCCC--CHHHH
Confidence 67888999999999998764 5688888877 88544
No 58
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=20.16 E-value=1.4e+02 Score=24.29 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=37.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHH----Hhhhhhh---------hhChHHHHHHHHHHH
Q 032209 46 VASLFFDD-AEKLINSMARALEQPCVDFKQVDSHVH----QLKGSSS---------SIGALRVKNVCIAFR 102 (145)
Q Consensus 46 ll~~F~~~-~~~~l~~L~~a~~~~~~D~~~l~~~aH----~LKGss~---------~lGa~~L~~~c~~LE 102 (145)
.++.++.+ ++..+..|..++.++ ||+.+..++= +|..... +-+...+.+.+.++.
T Consensus 238 ~~~~~v~~~~~~~~~~l~~AL~~g--D~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r 306 (414)
T 3f0n_A 238 LLKFRAESVVPERMKEMTRCIQEQ--DFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFN 306 (414)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHH
Confidence 45677777 799999999999999 9998866421 3333222 234456666666664
Done!