Your job contains 1 sequence.
>032211
MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL
ASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEEESSSAKKQK
QADNSSCNGSLNCLSGKDGLNNLQN
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032211
(145 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504955051 - symbol:AT5G52545 "AT5G52545" speci... 181 4.9e-14 1
ZFIN|ZDB-GENE-040426-1764 - symbol:rbm18 "RNA binding mot... 146 2.5e-10 1
UNIPROTKB|E1BQ47 - symbol:RBM18 "Uncharacterized protein"... 134 4.7e-09 1
UNIPROTKB|Q96H35 - symbol:RBM18 "Probable RNA-binding pro... 134 4.7e-09 1
MGI|MGI:1915139 - symbol:Rbm18 "RNA binding motif protein... 134 4.7e-09 1
RGD|1307411 - symbol:Rbm18 "RNA binding motif protein 18"... 133 5.9e-09 1
UNIPROTKB|Q3ZCC5 - symbol:RBM18 "Probable RNA-binding pro... 128 2.0e-08 1
UNIPROTKB|J9NUA3 - symbol:RBM18 "Uncharacterized protein"... 128 2.0e-08 1
UNIPROTKB|F1SLQ8 - symbol:RBM18 "Uncharacterized protein"... 126 3.3e-08 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 117 1.3e-06 1
UNIPROTKB|F1P022 - symbol:CELF2 "CUGBP Elav-like family m... 94 2.4e-06 2
FB|FBgn0024987 - symbol:ssx "sister-of-Sex-lethal" specie... 116 3.7e-06 1
ZFIN|ZDB-GENE-040426-2464 - symbol:rbfox2 "RNA binding pr... 109 5.8e-06 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 114 7.0e-06 1
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 94 7.8e-06 2
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 94 7.8e-06 2
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 94 8.0e-06 2
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 94 1.0e-05 2
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p... 94 1.1e-05 2
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si... 94 1.2e-05 2
UNIPROTKB|H0YCP8 - symbol:PUF60 "Poly(U)-binding-splicing... 106 1.7e-05 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 111 1.9e-05 1
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 94 2.0e-05 2
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 94 2.0e-05 2
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 94 2.2e-05 2
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 94 2.2e-05 2
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 94 2.2e-05 2
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 107 2.3e-05 1
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 94 2.4e-05 2
UNIPROTKB|H0YB86 - symbol:PABPC1 "Polyadenylate-binding p... 99 2.4e-05 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 107 2.6e-05 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 107 2.8e-05 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 98 3.0e-05 1
TAIR|locus:2050024 - symbol:AT2G21440 species:3702 "Arabi... 111 3.3e-05 1
DICTYBASE|DDB_G0267714 - symbol:sf3b4 "splicing factor 3B... 105 3.6e-05 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 108 3.8e-05 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 108 3.8e-05 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 107 3.8e-05 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 107 3.8e-05 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 107 3.8e-05 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 108 3.9e-05 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 107 3.9e-05 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 107 3.9e-05 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 107 3.9e-05 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 107 3.9e-05 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 107 3.9e-05 1
UNIPROTKB|F1RKX4 - symbol:RBFOX1 "Uncharacterized protein... 101 4.3e-05 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 105 4.5e-05 1
UNIPROTKB|F8VR27 - symbol:RBFOX1 "RNA-binding protein fox... 101 5.5e-05 1
UNIPROTKB|F8VZY7 - symbol:RBFOX1 "RNA-binding protein fox... 101 5.5e-05 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 106 6.2e-05 1
UNIPROTKB|F1PJX5 - symbol:RBFOX3 "Uncharacterized protein... 101 6.2e-05 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 106 6.3e-05 1
MGI|MGI:106368 - symbol:Rbfox3 "RNA binding protein, fox-... 103 6.3e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 95 6.3e-05 1
RGD|1560070 - symbol:Rbfox3 "RNA binding protein, fox-1 h... 103 6.3e-05 1
UNIPROTKB|A6NFN3 - symbol:RBFOX3 "RNA binding protein fox... 101 7.7e-05 1
UNIPROTKB|J9PAH3 - symbol:RBFOX3 "Uncharacterized protein... 101 7.8e-05 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 105 7.8e-05 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 105 7.9e-05 1
ZFIN|ZDB-GENE-040927-11 - symbol:rbfox1 "RNA binding prot... 102 8.0e-05 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 104 8.1e-05 1
UNIPROTKB|B4DF29 - symbol:RBFOX3 "RNA binding protein fox... 101 8.2e-05 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 104 8.3e-05 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 104 8.4e-05 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 99 8.8e-05 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 102 9.0e-05 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 102 9.0e-05 1
UNIPROTKB|B0QYV1 - symbol:RBM9 "RNA binding protein fox-1... 101 9.6e-05 1
UNIPROTKB|J3QRF4 - symbol:RBFOX3 "RNA binding protein fox... 101 9.7e-05 1
RGD|1311210 - symbol:Rbfox1 "RNA binding protein, fox-1 h... 101 0.00010 1
UNIPROTKB|B0QYY4 - symbol:RBFOX2 "RNA-binding protein fox... 101 0.00010 1
UNIPROTKB|E9PMU7 - symbol:PUF60 "Poly(U)-binding-splicing... 98 0.00010 1
UNIPROTKB|J9P300 - symbol:RBFOX2 "RNA binding protein fox... 101 0.00010 1
UNIPROTKB|F1NCA4 - symbol:RBFOX2 "RNA binding protein fox... 101 0.00011 1
UNIPROTKB|F1M2V8 - symbol:Rbm9 "RNA binding protein fox-1... 101 0.00011 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 98 0.00011 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 104 0.00011 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 99 0.00011 1
UNIPROTKB|F1LUP8 - symbol:Rbm9 "RNA binding protein fox-1... 101 0.00011 1
FB|FBgn0030571 - symbol:CG14414 species:7227 "Drosophila ... 96 0.00011 1
UNIPROTKB|F1P8W1 - symbol:RBFOX2 "RNA binding protein fox... 101 0.00011 1
UNIPROTKB|O43251 - symbol:RBFOX2 "RNA binding protein fox... 101 0.00011 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 104 0.00011 1
UNIPROTKB|F1SPT7 - symbol:RBFOX2 "RNA binding protein fox... 101 0.00011 1
UNIPROTKB|A6QPR6 - symbol:RBFOX2 "RNA binding protein fox... 101 0.00011 1
UNIPROTKB|F1Q2X1 - symbol:RBFOX1 "RNA binding protein fox... 101 0.00011 1
MGI|MGI:1926224 - symbol:Rbfox1 "RNA binding protein, fox... 101 0.00011 1
UNIPROTKB|I3L1D4 - symbol:RBFOX1 "RNA-binding protein fox... 95 0.00011 1
UNIPROTKB|Q9NWB1 - symbol:RBFOX1 "RNA binding protein fox... 101 0.00011 1
UNIPROTKB|F1N2A9 - symbol:RBFOX2 "RNA binding protein fox... 101 0.00011 1
UNIPROTKB|F1NBH4 - symbol:RBFOX1 "RNA binding protein fox... 101 0.00011 1
UNIPROTKB|J3KNW3 - symbol:RBFOX1 "RNA binding protein fox... 101 0.00012 1
UNIPROTKB|E9PN18 - symbol:PUF60 "Poly(U)-binding-splicing... 98 0.00012 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 100 0.00012 1
UNIPROTKB|F1Q2W1 - symbol:RBFOX1 "RNA binding protein fox... 101 0.00012 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 103 0.00013 1
UNIPROTKB|B7Z1U7 - symbol:RBFOX1 "RNA binding protein fox... 101 0.00013 1
UNIPROTKB|F1N700 - symbol:RBFOX3 "RNA binding protein fox... 101 0.00013 1
RGD|1311838 - symbol:Rbfox2 "RNA binding protein, fox-1 h... 101 0.00013 1
WARNING: Descriptions of 84 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:504955051 [details] [associations]
symbol:AT5G52545 "AT5G52545" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002688 IPI:IPI00520016 RefSeq:NP_680425.4
UniGene:At.27484 UniGene:At.45864 PRIDE:F4KG83
EnsemblPlants:AT5G52545.1 GeneID:835331 KEGG:ath:AT5G52545
PhylomeDB:F4KG83 Uniprot:F4KG83
Length = 79
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 42/78 (53%), Positives = 51/78 (65%)
Query: 46 MHGRLACGRPLVVRLASEKYLEDAAQNSSK-AVGEANKTGFVGGTS-GQMNRSXXXXXXX 103
MHGRLACGRPLVVRLASEK+LED++ + SK ++ E N+T FV G+S GQM+R
Sbjct: 1 MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60
Query: 104 XXXXXXEE-ESSSAKKQK 120
EE E KKQK
Sbjct: 61 NKLKALEEDEKRDPKKQK 78
>ZFIN|ZDB-GENE-040426-1764 [details] [associations]
symbol:rbm18 "RNA binding motif protein 18"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1764 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q7YZ92 CTD:92400 eggNOG:NOG75816
GeneTree:ENSGT00390000013765 HOGENOM:HOG000231619
HOVERGEN:HBG057119 OMA:EAKLQMM OrthoDB:EOG4MCX1D EMBL:BC059651
IPI:IPI00481916 RefSeq:NP_957087.1 UniGene:Dr.82770
ProteinModelPortal:Q6PBM8 Ensembl:ENSDART00000064975 GeneID:393766
KEGG:dre:393766 InParanoid:Q6PBM8 NextBio:20814763 Bgee:Q6PBM8
Uniprot:Q6PBM8
Length = 188
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H GP G PRG+ F+ + TKEEA+ A + ++G+LA + LVVR
Sbjct: 42 LLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLVVRW 101
Query: 61 ASEKYLE 67
A + E
Sbjct: 102 AHAQRFE 108
>UNIPROTKB|E1BQ47 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:AADN02026362
IPI:IPI00574341 RefSeq:XP_415396.1 ProteinModelPortal:E1BQ47
Ensembl:ENSGALT00000002045 GeneID:417111 KEGG:gga:417111
NextBio:20820467 Uniprot:E1BQ47
Length = 190
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEKAIQCLNGKLALSKKLVVRW 103
Query: 61 A 61
A
Sbjct: 104 A 104
>UNIPROTKB|Q96H35 [details] [associations]
symbol:RBM18 "Probable RNA-binding protein 18" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471090 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q7YZ92 EMBL:AL162424 CTD:92400 eggNOG:NOG75816
HOGENOM:HOG000231619 HOVERGEN:HBG057119 OMA:EAKLQMM
OrthoDB:EOG4MCX1D EMBL:AK057676 EMBL:BC008942 EMBL:BC019319
IPI:IPI00062751 RefSeq:NP_149108.1 UniGene:Hs.415842
ProteinModelPortal:Q96H35 SMR:Q96H35 IntAct:Q96H35
PhosphoSite:Q96H35 DMDM:74762658 PRIDE:Q96H35 DNASU:92400
Ensembl:ENST00000417201 GeneID:92400 KEGG:hsa:92400 UCSC:uc004bma.2
GeneCards:GC09M125001 HGNC:HGNC:28413 neXtProt:NX_Q96H35
PharmGKB:PA134928031 InParanoid:Q96H35 PhylomeDB:Q96H35
GenomeRNAi:92400 NextBio:77756 Bgee:Q96H35 CleanEx:HS_RBM18
Genevestigator:Q96H35 GermOnline:ENSG00000119446 Uniprot:Q96H35
Length = 190
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 A 61
A
Sbjct: 104 A 104
>MGI|MGI:1915139 [details] [associations]
symbol:Rbm18 "RNA binding motif protein 18" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915139 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q7YZ92 CTD:92400 eggNOG:NOG75816 GeneTree:ENSGT00390000013765
HOGENOM:HOG000231619 HOVERGEN:HBG057119 OMA:EAKLQMM
OrthoDB:EOG4MCX1D EMBL:AK008110 EMBL:AK021243 EMBL:AK035348
EMBL:AK036252 EMBL:BC005540 IPI:IPI00461136 RefSeq:NP_001153107.1
RefSeq:NP_080710.1 UniGene:Mm.205937 ProteinModelPortal:Q9CR83
SMR:Q9CR83 STRING:Q9CR83 PhosphoSite:Q9CR83 PRIDE:Q9CR83
DNASU:67889 Ensembl:ENSMUST00000028251 GeneID:67889 KEGG:mmu:67889
InParanoid:Q9CR83 NextBio:325854 Bgee:Q9CR83 CleanEx:MM_RBM18
Genevestigator:Q9CR83 GermOnline:ENSMUSG00000026889 Uniprot:Q9CR83
Length = 190
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 A 61
A
Sbjct: 104 A 104
>RGD|1307411 [details] [associations]
symbol:Rbm18 "RNA binding motif protein 18" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307411 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474001 CTD:92400 GeneTree:ENSGT00390000013765 OMA:EAKLQMM
RefSeq:NP_001101308.1 UniGene:Rn.2745 Ensembl:ENSRNOT00000009706
GeneID:311902 KEGG:rno:311902 NextBio:664432 Uniprot:G3V6X2
Length = 190
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 5 YGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
+GK+ DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR A
Sbjct: 48 FGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWA 104
>UNIPROTKB|Q3ZCC5 [details] [associations]
symbol:RBM18 "Probable RNA-binding protein 18" species:9913
"Bos taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9Y6M1
EMBL:BC102518 IPI:IPI00716541 RefSeq:NP_001029496.1
UniGene:Bt.52505 ProteinModelPortal:Q3ZCC5
Ensembl:ENSBTAT00000021769 GeneID:508615 KEGG:bta:508615 CTD:92400
eggNOG:NOG75816 GeneTree:ENSGT00390000013765 HOGENOM:HOG000231619
HOVERGEN:HBG057119 InParanoid:Q3ZCC5 OMA:EAKLQMM OrthoDB:EOG4MCX1D
NextBio:20868601 Uniprot:Q3ZCC5
Length = 190
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +G + DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGTVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 A 61
A
Sbjct: 104 A 104
>UNIPROTKB|J9NUA3 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:AAEX03006907
RefSeq:XP_548474.2 ProteinModelPortal:J9NUA3
Ensembl:ENSCAFT00000050112 GeneID:491353 KEGG:cfa:491353
Uniprot:J9NUA3
Length = 190
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +G + DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGTVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 A 61
A
Sbjct: 104 A 104
>UNIPROTKB|F1SLQ8 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:CU041257
RefSeq:XP_001925831.1 RefSeq:XP_001925851.1 UniGene:Ssc.14096
ProteinModelPortal:F1SLQ8 Ensembl:ENSSSCT00000029013
GeneID:100154045 KEGG:ssc:100154045 Uniprot:F1SLQ8
Length = 190
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +G + DFL+H G G PRG+ F+ + TK+EA+ A ++G+LA + LVVR
Sbjct: 44 LLQKFGTVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIHCLNGKLALSKKLVVRW 103
Query: 61 A 61
A
Sbjct: 104 A 104
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F+ YGK+V + F+ R + G RGFAF+ Y K+EA A E++ GR+ GR + V+
Sbjct: 35 LFAKYGKVV-DVFI--PRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 61 ASEKYLEDAAQNSSKAVGE 79
A KY +A + S V E
Sbjct: 92 A--KYGPNAEKISKGRVVE 108
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 94 (38.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 32 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 87
Query: 58 VRLA 61
V+ A
Sbjct: 88 VKFA 91
Score = 40 (19.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 72 NSSKAV-GEANKTGFVGGTSGQMN 94
NS A+ G TG GT+G M+
Sbjct: 241 NSMAALNGGLGATGLTNGTAGTMD 264
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 116 (45.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVV 58
+FSPYG IV + L R G PRG AF+ Y+ +EEA+ A + ++ + G +P+ V
Sbjct: 198 IFSPYGLIVQRNIL---RDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWV 254
Query: 59 RLASEKYLEDAAQNSSKAVGEANKTGFVGG 88
RLA E AAQ ++ +G N G GG
Sbjct: 255 RLAEEHGKAKAAQFMAQ-IGGGNGGG--GG 281
>ZFIN|ZDB-GENE-040426-2464 [details] [associations]
symbol:rbfox2 "RNA binding protein, fox-1 homolog
(C. elegans) 2" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048739 "cardiac muscle fiber development"
evidence=IGI] [GO:0043484 "regulation of RNA splicing"
evidence=IGI;IMP] [GO:0048741 "skeletal muscle fiber development"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2464
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048741
GO:GO:0043484 GO:GO:0048739 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS eggNOG:NOG293807
CTD:23543 HOGENOM:HOG000230971 EMBL:BC068360 IPI:IPI00488678
RefSeq:NP_999911.1 UniGene:Dr.10524 ProteinModelPortal:Q6NV06
SMR:Q6NV06 PRIDE:Q6NV06 GeneID:406569 KEGG:dre:406569
InParanoid:Q6NV06 NextBio:20818128 ArrayExpress:Q6NV06 Bgee:Q6NV06
Uniprot:Q6NV06
Length = 241
Score = 109 (43.4 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + + +A+ A+E++HG + GR + V
Sbjct: 1 MFGQFGKILDVEIIFNERGSK-----GFGFVTFESSGDAEKARERLHGTIVEGRKIEVNN 55
Query: 61 ASEKYLEDAAQNSSKAVGEANKT 83
A+ + + + S A G++ T
Sbjct: 56 ATARVMTNKKMVSPYANGDSLST 78
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 114 (45.2 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F YG+IVS + H G +G F F+ +S EE+K AK ++G L G+P+VVR+
Sbjct: 323 IFGCYGQIVSAKVMCHENGRSKG----FGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378
Query: 61 ASEK 64
A K
Sbjct: 379 AERK 382
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 94 (38.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 58 VRLA 61
V+ A
Sbjct: 183 VKFA 186
Score = 40 (19.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 72 NSSKAV-GEANKTGFVGGTSGQMN 94
NS A+ G TG GT+G M+
Sbjct: 338 NSMAALNGGLGATGLTNGTAGTMD 361
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 94 (38.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 58 VRLA 61
V+ A
Sbjct: 183 VKFA 186
Score = 40 (19.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 72 NSSKAV-GEANKTGFVGGTSGQMN 94
NS A+ G TG GT+G M+
Sbjct: 338 NSMAALNGGLGATGLTNGTAGTMD 361
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 94 (38.1 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 133 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 188
Query: 58 VRLA 61
V+ A
Sbjct: 189 VKFA 192
Score = 40 (19.1 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 72 NSSKAV-GEANKTGFVGGTSGQMN 94
NS A+ G TG GT+G M+
Sbjct: 344 NSMAALNGGLGATGLTNGTAGTMD 367
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 94 (38.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 58 VRLA 61
V+ A
Sbjct: 183 VKFA 186
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 62 SEKYLEDAAQNSSKAV-GEANKTGFVGGTSGQMN 94
S++ L N A+ G TG GT+G M+
Sbjct: 338 SKRLLLPKDNNGMAALNGGLGATGLTNGTAGTMD 371
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 94 (38.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 40 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 95
Query: 58 VRLA 61
V+ A
Sbjct: 96 VKFA 99
Score = 36 (17.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 254 GGLGATGLTNGTAGTMD 270
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 94 (38.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 40 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 95
Query: 58 VRLA 61
V+ A
Sbjct: 96 VKFA 99
Score = 36 (17.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 260 GGLGATGLTNGTAGTMD 276
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 106 (42.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + VR
Sbjct: 14 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVRQG 70
Query: 62 SEKYLEDAAQ 71
++ + A +
Sbjct: 71 AKASIPQACR 80
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MFS YG + S + + P+ G+ RGF F+ YS EEA A +M+G++ +PL + L
Sbjct: 351 MFSEYGNVTSSKVMLN---PQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGG 88
A K ED + + G + G
Sbjct: 407 AQRK--EDRRAHLQALFSQIRAPGPMSG 432
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 94 (38.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 58 VRLA 61
V+ A
Sbjct: 183 VKFA 186
Score = 36 (17.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 341 GGLGATGLTNGTAGTMD 357
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 94 (38.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 58 VRLA 61
V+ A
Sbjct: 183 VKFA 186
Score = 36 (17.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 341 GGLGATGLTNGTAGTMD 357
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 94 (38.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 151 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 58 VRLA 61
V+ A
Sbjct: 207 VKFA 210
Score = 36 (17.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 365 GGLGATGLTNGTAGTMD 381
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 94 (38.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 151 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 58 VRLA 61
V+ A
Sbjct: 207 VKFA 210
Score = 36 (17.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 365 GGLGATGLTNGTAGTMD 381
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 94 (38.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 151 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 58 VRLA 61
V+ A
Sbjct: 207 VKFA 210
Score = 36 (17.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 365 GGLGATGLTNGTAGTMD 381
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 112 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 168
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 169 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 200
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 94 (38.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 158 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 58 VRLA 61
V+ A
Sbjct: 214 VKFA 217
Score = 36 (17.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 78 GEANKTGFVGGTSGQMN 94
G TG GT+G M+
Sbjct: 378 GGLGATGLTNGTAGTMD 394
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 5 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 59
Query: 62 SEK 64
K
Sbjct: 60 QRK 62
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 107 (42.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FS +G I S + H+ G +GV F+E+ST EEA A KM+G++ +P+ V L
Sbjct: 242 LFSEFGTITSCKVMVHSNGISKGV----GFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 61 ASEK 64
A K
Sbjct: 298 AQCK 301
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 107 (42.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FSP+G+I + R + P+GF FI + ++++A+ A + + G++ GR + V +
Sbjct: 26 LFSPFGQIKEARLI---RDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV 82
Query: 61 ASEKYLEDAAQNSSKA 76
A A NS+KA
Sbjct: 83 AKNAEEVRAGINSNKA 98
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 13 FLWHTRGPKR---GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLEDA 69
F+W PK G+P+GFAF++++ K++A A +K +G + RP+ V A K + +
Sbjct: 356 FVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNG 415
Query: 70 AQNSSKAVGEANKTGFVG 87
A +++ A + +K G G
Sbjct: 416 AADATTASADGDKEGSDG 433
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 105 (42.0 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ F + GV +GFAFI + + E + A E M+ + C +P+ V A
Sbjct: 118 FSRFGTII---FTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYA 174
Query: 62 SEKYLEDAAQNSSKAVGEANK-TGFVGGTSGQMNRSXXXXXXXXXXXXXEEESSSAK 117
+K + +S++ + A++ TG++ Q + S +++ ++
Sbjct: 175 RKKDSNERHGSSAERIIAASRNTGYLNQQQQQQSSSTSSTSTISTSTPQQQQQQQSQ 231
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGTITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGTITSTKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 107 (42.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 107 (42.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 107 (42.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGTITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 107 (42.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 107 (42.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 107 (42.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 107 (42.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 107 (42.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRL 357
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 101 (40.6 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 140 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 194
Query: 61 ASEKYL 66
A+ + +
Sbjct: 195 ATARVM 200
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 105 (42.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F+ +G++VS H P+ P+GF ++++S E+AK A + + G RP+ +
Sbjct: 286 LFAKHGEVVSVRIPTH---PETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGGTSG 91
+S + D + S+ G + G GG G
Sbjct: 343 SSPRPNNDGGRGGSRGFG--GRGGGRGGNRG 371
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 101 (40.6 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 135 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 189
Query: 61 ASEKYL 66
A+ + +
Sbjct: 190 ATARVM 195
>UNIPROTKB|F8VZY7 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01022282 ProteinModelPortal:F8VZY7 SMR:F8VZY7
Ensembl:ENST00000551752 ArrayExpress:F8VZY7 Bgee:F8VZY7
Uniprot:F8VZY7
Length = 263
Score = 101 (40.6 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 136 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
Query: 61 ASEKYL 66
A+ + +
Sbjct: 191 ATARVM 196
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 106 (42.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+PYG I S + T G G RGF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FAPYGTITSAKVM--TDG---GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|F1PJX5 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:AAEX03006224 EMBL:AAEX03006225
Ensembl:ENSCAFT00000008934 Uniprot:F1PJX5
Length = 279
Score = 101 (40.6 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 44 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 98
Query: 61 ASEKYL 66
A+ + +
Sbjct: 99 ATARVM 104
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 106 (42.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSTKVM--TEG---GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>MGI|MGI:106368 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C.
elegans) 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043025 "neuronal cell
body" evidence=IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0097458 "neuron part" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106368 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622 EMBL:CH466558
GO:GO:0043484 EMBL:AL591075 GO:GO:0000381 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 CTD:146713
EMBL:FJ958310 EMBL:FJ958311 EMBL:AK079086 EMBL:AK160816
EMBL:AL591514 EMBL:AL591544 EMBL:BC054403 IPI:IPI00222115
IPI:IPI00408241 IPI:IPI00648836 IPI:IPI00720112 IPI:IPI00894965
RefSeq:NP_001020102.2 RefSeq:NP_001034256.1 RefSeq:NP_001034257.1
UniGene:Mm.341103 ProteinModelPortal:Q8BIF2 SMR:Q8BIF2
IntAct:Q8BIF2 STRING:Q8BIF2 PaxDb:Q8BIF2 PRIDE:Q8BIF2
Ensembl:ENSMUST00000017576 Ensembl:ENSMUST00000069343
Ensembl:ENSMUST00000103023 Ensembl:ENSMUST00000106278
Ensembl:ENSMUST00000117731 Ensembl:ENSMUST00000120061 GeneID:52897
KEGG:mmu:52897 UCSC:uc007mpo.1 InParanoid:Q8BIF2 OMA:LQASLCR
NextBio:309687 Bgee:Q8BIF2 Genevestigator:Q8BIF2 Uniprot:Q8BIF2
Length = 374
Score = 103 (41.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 118 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172
Query: 61 ASEKYLEDAAQNSSKAVG 78
A+ + + + + A G
Sbjct: 173 ATARVMTNKKPGNPYANG 190
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 23 GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE 63
G PRGFAFIE++ + A+ A E+M+G GRPL V LA++
Sbjct: 43 GRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>RGD|1560070 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C. elegans)
3" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA;ISO] [GO:0097458 "neuron part" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
RGD:1560070 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0003677 GO:GO:0043025 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473948 GO:GO:0000381
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 OrthoDB:EOG4NVZKS CTD:146713 OMA:LQASLCR
IPI:IPI00370377 RefSeq:NP_001127970.1 UniGene:Rn.143966
Ensembl:ENSRNOT00000004524 GeneID:287847 KEGG:rno:287847
NextBio:627138 Uniprot:D4A2H6
Length = 375
Score = 103 (41.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 118 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172
Query: 61 ASEKYLEDAAQNSSKAVG 78
A+ + + + + A G
Sbjct: 173 ATARVMTNKKPGNPYANG 190
>UNIPROTKB|A6NFN3 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381 eggNOG:NOG258617
KO:K14946 HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414
CTD:146713 EMBL:AK293617 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 RefSeq:NP_001076044.1 UniGene:Hs.135229
ProteinModelPortal:A6NFN3 SMR:A6NFN3 STRING:A6NFN3 PaxDb:A6NFN3
PRIDE:A6NFN3 Ensembl:ENST00000415831 Ensembl:ENST00000453134
Ensembl:ENST00000580155 GeneID:146713 KEGG:hsa:146713
UCSC:uc010dhs.3 GeneCards:GC17M077086 HGNC:HGNC:27097 HPA:HPA030790
neXtProt:NX_A6NFN3 HOGENOM:HOG000230971 GenomeRNAi:146713
NextBio:85428 ArrayExpress:A6NFN3 Bgee:A6NFN3 Genevestigator:A6NFN3
Uniprot:A6NFN3
Length = 312
Score = 101 (40.6 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 118 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172
Query: 61 ASEKYL 66
A+ + +
Sbjct: 173 ATARVM 178
>UNIPROTKB|J9PAH3 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
EMBL:AAEX03006224 EMBL:AAEX03006225 Ensembl:ENSCAFT00000046179
Uniprot:J9PAH3
Length = 314
Score = 101 (40.6 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 59 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 113
Query: 61 ASEKYL 66
A+ + +
Sbjct: 114 ATARVM 119
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 105 (42.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGVITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 105 (42.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGVITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>ZFIN|ZDB-GENE-040927-11 [details] [associations]
symbol:rbfox1 "RNA binding protein, fox-1 homolog
(C. elegans) 1" species:7955 "Danio rerio" [GO:0043484 "regulation
of RNA splicing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0021854 "hypothalamus
development" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040927-11 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0021854 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:BC081500 IPI:IPI00502083
RefSeq:NP_001005596.1 UniGene:Dr.133079 HSSP:Q9NWB1
ProteinModelPortal:Q642J5 SMR:Q642J5 PRIDE:Q642J5
Ensembl:ENSDART00000122037 GeneID:449554 KEGG:dre:449554
InParanoid:Q642J5 OMA:PPDTMAQ OrthoDB:EOG4NVZKS NextBio:20832672
Bgee:Q642J5 Uniprot:Q642J5
Length = 373
Score = 102 (41.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + + +A A+EK+HG + GR + V
Sbjct: 138 MFGQFGKILDVEIIFNERGSK-----GFGFVTFESSADADRAREKLHGTVVEGRKIEVNN 192
Query: 61 ASEKYL 66
A+ + +
Sbjct: 193 ATARVM 198
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 104 (41.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 265 IFEPFGRIDSIQLMMDS---ETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGH 321
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 322 VTER--TDASTASSFLDNDELERTGIDLGTTGRL 353
>UNIPROTKB|B4DF29 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 UniGene:Hs.135229 HGNC:HGNC:27097
HOGENOM:HOG000230971 EMBL:AC020689 EMBL:AC027824 EMBL:AC055858
EMBL:AC142247 EMBL:AK293905 ProteinModelPortal:B4DF29 STRING:B4DF29
Ensembl:ENST00000584778 UCSC:uc010wua.2 ArrayExpress:B4DF29
Bgee:B4DF29 Uniprot:B4DF29
Length = 325
Score = 101 (40.6 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 118 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172
Query: 61 ASEKYL 66
A+ + +
Sbjct: 173 ATARVM 178
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 104 (41.7 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 31/97 (31%), Positives = 48/97 (49%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSPYG+I L RGP G+ RG AF+ ++ ++ A+ A + MH C P+V
Sbjct: 165 MFSPYGQIEECRIL---RGPD-GLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIV 220
Query: 58 VRLAS---EKYLEDAAQNSSKAVGEANKTGFVGGTSG 91
V+ A +K + AQ + + + N G +G
Sbjct: 221 VKFADTQKDKEQKRIAQQLQQQMQQLNAASMWGNLTG 257
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 104 (41.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+GKI + + + G +G+ FI ++ E AK A E+++G GRP+ V
Sbjct: 283 IFEPFGKIEGIQLMMDS---ETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGH 339
Query: 61 ASEKYLEDAAQNSSKAVG-EANKTGFVGGTSGQM 93
+E+ DA+ SS E +TG GT+G++
Sbjct: 340 VTER--SDASSASSFLDNDELERTGIDLGTTGRL 371
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 99 (39.9 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 147 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 201
Query: 62 SEK 64
K
Sbjct: 202 QRK 204
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 102 (41.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F YG ++S H P P+GF ++++S+ +EAK A E M+G GRP +
Sbjct: 289 VFGEYGNVISCRVPTH---PDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 96
++ + D N++ N+ G GG G RS
Sbjct: 346 STPR---DNTNNNNNN----NRRGGFGGGFGGRERS 374
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 102 (41.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F YG ++S H P P+GF ++++S+ +EAK A E M+G GRP +
Sbjct: 289 VFGEYGNVISCRVPTH---PDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 96
++ + D N++ N+ G GG G RS
Sbjct: 346 STPR---DNTNNNNNN----NRRGGFGGGFGGRERS 374
>UNIPROTKB|B0QYV1 [details] [associations]
symbol:RBM9 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044 InterPro:IPR025670
Pfam:PF12414 EMBL:AL079295 IPI:IPI00843981 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
SMR:B0QYV1 STRING:B0QYV1 Ensembl:ENST00000397303 Uniprot:B0QYV1
Length = 357
Score = 101 (40.6 bits), Expect = 9.7e-05, P = 9.6e-05
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 111 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 165
Query: 61 ASEKYL 66
A+ + +
Sbjct: 166 ATARVM 171
>UNIPROTKB|J3QRF4 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC021534 EMBL:AC073624 HGNC:HGNC:27097
OMA:LQASLCR EMBL:AC020689 EMBL:AC027824 EMBL:AC055858 EMBL:AC142247
ProteinModelPortal:J3QRF4 Ensembl:ENST00000583458 Uniprot:J3QRF4
Length = 358
Score = 101 (40.6 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 117 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 171
Query: 61 ASEKYL 66
A+ + +
Sbjct: 172 ATARVM 177
>RGD|1311210 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C. elegans)
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005802 "trans-Golgi network" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 RGD:1311210 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS IPI:IPI00949707
ProteinModelPortal:D4A2J5 Ensembl:ENSRNOT00000065101
UCSC:RGD:1311210 ArrayExpress:D4A2J5 Uniprot:D4A2J5
Length = 367
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 128 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 182
Query: 61 ASEKYL 66
A+ + +
Sbjct: 183 ATARVM 188
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 110 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 164
Query: 61 ASEKYL 66
A+ + +
Sbjct: 165 ATARVM 170
>UNIPROTKB|E9PMU7 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
HGNC:HGNC:17042 IPI:IPI00976817 ProteinModelPortal:E9PMU7
SMR:E9PMU7 Ensembl:ENST00000531897 ArrayExpress:E9PMU7 Bgee:E9PMU7
Uniprot:E9PMU7
Length = 247
Score = 98 (39.6 bits), Expect = 0.00010, P = 0.00010
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 169 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 222
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 130 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 184
Query: 61 ASEKYL 66
A+ + +
Sbjct: 185 ATARVM 190
>UNIPROTKB|F1NCA4 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AADN02006252 EMBL:AADN02006253 IPI:IPI00583090
Ensembl:ENSGALT00000020480 Uniprot:F1NCA4
Length = 377
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 131 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 185
Query: 61 ASEKYL 66
A+ + +
Sbjct: 186 ATARVM 191
>UNIPROTKB|F1M2V8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00778339
Ensembl:ENSRNOT00000006398 ArrayExpress:F1M2V8 Uniprot:F1M2V8
Length = 377
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 130 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 184
Query: 61 ASEKYL 66
A+ + +
Sbjct: 185 ATARVM 190
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 41 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 95
Query: 62 SEK 64
K
Sbjct: 96 QRK 98
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGVITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 183 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 237
Query: 62 SEK 64
K
Sbjct: 238 QRK 240
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 130 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 184
Query: 61 ASEKYL 66
A+ + +
Sbjct: 185 ATARVM 190
>FB|FBgn0030571 [details] [associations]
symbol:CG14414 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:AE014298
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 FlyBase:FBgn0030571
UniGene:Dm.14675 GeneID:32394 KEGG:dme:Dmel_CG14414
GenomeRNAi:32394 NextBio:778237 RefSeq:NP_727783.3
ProteinModelPortal:Q9VY29 SMR:Q9VY29 UCSC:CG14414-RB
InParanoid:Q9VY29 PhylomeDB:Q9VY29 ArrayExpress:Q9VY29 Bgee:Q9VY29
Uniprot:Q9VY29
Length = 205
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 6 GKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE-K 64
G I D L+H GP G RG+AF+ ++ E A A K+ G R + VRLA K
Sbjct: 51 GAIEKFDMLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAKNIK 110
Query: 65 YLE 67
Y E
Sbjct: 111 YDE 113
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 140 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 194
Query: 61 ASEKYL 66
A+ + +
Sbjct: 195 ATARVM 200
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 140 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 194
Query: 61 ASEKYL 66
A+ + +
Sbjct: 195 ATARVM 200
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+P+G I S + R P GV RG F+ +ST EEA A +M+G++ +PL V LA
Sbjct: 347 FAPFGTITSCKVM---RDPS-GVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 62 SEK 64
K
Sbjct: 403 QRK 405
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 146 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 200
Query: 61 ASEKYL 66
A+ + +
Sbjct: 201 ATARVM 206
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 148 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 202
Query: 61 ASEKYL 66
A+ + +
Sbjct: 203 ATARVM 208
>UNIPROTKB|F1Q2X1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 EMBL:AAEX03004562 EMBL:AAEX03004563 EMBL:AAEX03004564
GeneID:609116 KEGG:cfa:609116 RefSeq:XP_863775.1
Ensembl:ENSCAFT00000030298 Uniprot:F1Q2X1
Length = 395
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 156 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
Query: 61 ASEKYL 66
A+ + +
Sbjct: 211 ATARVM 216
>MGI|MGI:1926224 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C.
elegans) 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005802 "trans-Golgi network" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0050885
"neuromuscular process controlling balance" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1926224 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 Reactome:REACT_24972 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ OrthoDB:EOG4NVZKS
ChiTaRS:RBFOX1 EMBL:AF107204 EMBL:AY659954 EMBL:AY659955
EMBL:AY659956 EMBL:AY659957 EMBL:AY659958 EMBL:AF191501
EMBL:AB041596 EMBL:AK134833 EMBL:BC059002 IPI:IPI00121045
IPI:IPI00605392 IPI:IPI00606138 IPI:IPI00607041 IPI:IPI00885248
IPI:IPI00886040 IPI:IPI00886174 RefSeq:NP_067452.2
RefSeq:NP_899011.2 UniGene:Mm.370334 ProteinModelPortal:Q9JJ43
SMR:Q9JJ43 STRING:Q9JJ43 PhosphoSite:Q9JJ43 PaxDb:Q9JJ43
PRIDE:Q9JJ43 Ensembl:ENSMUST00000056416 Ensembl:ENSMUST00000115841
GeneID:268859 KEGG:mmu:268859 UCSC:uc007ycb.2 UCSC:uc007ycc.2
UCSC:uc007ycf.2 UCSC:uc007ycg.2 UCSC:uc007ych.2 UCSC:uc007yci.2
NextBio:392539 Bgee:Q9JJ43 CleanEx:MM_A2BP1 Genevestigator:Q9JJ43
GermOnline:ENSMUSG00000008658 Uniprot:Q9JJ43
Length = 396
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 135 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 189
Query: 61 ASEKYL 66
A+ + +
Sbjct: 190 ATARVM 195
>UNIPROTKB|I3L1D4 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
Ensembl:ENST00000570626 Bgee:I3L1D4 Uniprot:I3L1D4
Length = 189
Score = 95 (38.5 bits), Expect = 0.00011, P = 0.00011
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPL 56
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR +
Sbjct: 138 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKI 188
>UNIPROTKB|Q9NWB1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0050658 "RNA transport" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005802 GO:GO:0043484
GO:GO:0050658 eggNOG:NOG258617 KO:K14946 CTD:54715
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ
EMBL:AF107203 EMBL:AF229057 EMBL:AF094849 EMBL:AF109106
EMBL:AF109120 EMBL:AF109107 EMBL:AF109108 EMBL:AF109109
EMBL:AF109110 EMBL:AF109111 EMBL:AF109112 EMBL:AF109113
EMBL:AF109114 EMBL:AF109115 EMBL:AF109116 EMBL:AF109117
EMBL:AF109118 EMBL:AF109119 EMBL:AF448859 EMBL:AK001027
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 EMBL:BC113691 IPI:IPI00152050
IPI:IPI00170678 IPI:IPI00170712 IPI:IPI01021020 IPI:IPI01022902
RefSeq:NP_001135805.1 RefSeq:NP_001135806.1 RefSeq:NP_061193.2
RefSeq:NP_665898.1 RefSeq:NP_665899.1 RefSeq:NP_665900.1
UniGene:Hs.459842 PDB:2ERR PDBsum:2ERR ProteinModelPortal:Q9NWB1
SMR:Q9NWB1 IntAct:Q9NWB1 MINT:MINT-2854938 STRING:Q9NWB1
PhosphoSite:Q9NWB1 DMDM:166897979 PaxDb:Q9NWB1 PRIDE:Q9NWB1
Ensembl:ENST00000311745 Ensembl:ENST00000355637
Ensembl:ENST00000436368 Ensembl:ENST00000547338
Ensembl:ENST00000550418 Ensembl:ENST00000553186 GeneID:54715
KEGG:hsa:54715 UCSC:uc002cys.2 UCSC:uc002cyt.2 UCSC:uc002cyw.2
UCSC:uc002cyx.2 UCSC:uc002cyy.2 GeneCards:GC16P006033
HGNC:HGNC:18222 HPA:HPA040809 MIM:605104 neXtProt:NX_Q9NWB1
ChiTaRS:RBFOX1 EvolutionaryTrace:Q9NWB1 GenomeRNAi:54715
NextBio:57277 ArrayExpress:Q9NWB1 Bgee:Q9NWB1 Genevestigator:Q9NWB1
GermOnline:ENSG00000078328 Uniprot:Q9NWB1
Length = 397
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 136 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
Query: 61 ASEKYL 66
A+ + +
Sbjct: 191 ATARVM 196
>UNIPROTKB|F1N2A9 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 InterPro:IPR025670
Pfam:PF12414 IPI:IPI00685735 OMA:HGEQSTN EMBL:DAAA02013800
Ensembl:ENSBTAT00000026808 Uniprot:F1N2A9
Length = 398
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 148 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 202
Query: 61 ASEKYL 66
A+ + +
Sbjct: 203 ATARVM 208
>UNIPROTKB|F1NBH4 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005802 "trans-Golgi network"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 GeneTree:ENSGT00390000013767
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ EMBL:AADN02023354
EMBL:AADN02023355 EMBL:AADN02023356 EMBL:AADN02023357
EMBL:AADN02023358 EMBL:AADN02023359 EMBL:AADN02023360
EMBL:AADN02023361 EMBL:AADN02023362 EMBL:AADN02023363
EMBL:AADN02023364 EMBL:AADN02023365 EMBL:AADN02023366
EMBL:AADN02023367 EMBL:AADN02023368 EMBL:AADN02023369
EMBL:AADN02023370 EMBL:AADN02023371 EMBL:AADN02023372
EMBL:AADN02023373 EMBL:AADN02023374 EMBL:AADN02023375
EMBL:AADN02023376 EMBL:AADN02023377 EMBL:AADN02023378
EMBL:AADN02023379 EMBL:AADN02023380 EMBL:AADN02023381
EMBL:AADN02023382 EMBL:AADN02023383 IPI:IPI00600787
Ensembl:ENSGALT00000011913 Uniprot:F1NBH4
Length = 399
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 138 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 192
Query: 61 ASEKYL 66
A+ + +
Sbjct: 193 ATARVM 198
>UNIPROTKB|J3KNW3 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 ProteinModelPortal:J3KNW3 Ensembl:ENST00000340209
Uniprot:J3KNW3
Length = 402
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 141 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 195
Query: 61 ASEKYL 66
A+ + +
Sbjct: 196 ATARVM 201
>UNIPROTKB|E9PN18 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
HGNC:HGNC:17042 IPI:IPI00983055 ProteinModelPortal:E9PN18
SMR:E9PN18 Ensembl:ENST00000529999 ArrayExpress:E9PN18 Bgee:E9PN18
Uniprot:E9PN18
Length = 263
Score = 98 (39.6 bits), Expect = 0.00012, P = 0.00012
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 169 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 222
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 32/84 (38%), Positives = 44/84 (52%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVV 58
+F YG IV ++ L R G PRG AF+ Y+ +EEA+ A ++ + G +PL V
Sbjct: 230 IFGKYGSIVQKNIL---RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 286
Query: 59 RLASEKYLEDAAQNSSK-AVGEAN 81
RLA E AA S+ V AN
Sbjct: 287 RLAEEHGKAKAAHFMSQMGVVPAN 310
>UNIPROTKB|F1Q2W1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 OMA:PPDTMAQ EMBL:AAEX03004562 EMBL:AAEX03004563
EMBL:AAEX03004564 RefSeq:XP_851461.1 ProteinModelPortal:F1Q2W1
Ensembl:ENSCAFT00000030301 GeneID:609116 KEGG:cfa:609116
Uniprot:F1Q2W1
Length = 418
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 156 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
Query: 61 ASEKYL 66
A+ + +
Sbjct: 211 ATARVM 216
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+PYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FAPYGMITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|B7Z1U7 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC005774 EMBL:AC006075
EMBL:AC006112 EMBL:AC007012 EMBL:AC007217 EMBL:AC007222
EMBL:AC007223 EMBL:AC009135 EMBL:AC022206 EMBL:AC023829
EMBL:AC027683 EMBL:AC079410 EMBL:AC125796 EMBL:AC131390
UniGene:Hs.459842 HGNC:HGNC:18222 ChiTaRS:RBFOX1 EMBL:AK293951
IPI:IPI00910807 SMR:B7Z1U7 STRING:B7Z1U7 Ensembl:ENST00000422070
UCSC:uc010uxz.1 Uniprot:B7Z1U7
Length = 425
Score = 101 (40.6 bits), Expect = 0.00013, P = 0.00013
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 179 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 233
Query: 61 ASEKYL 66
A+ + +
Sbjct: 234 ATARVM 239
>UNIPROTKB|F1N700 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043025 "neuronal cell body" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:DAAA02049469 EMBL:DAAA02049462 EMBL:DAAA02049463
EMBL:DAAA02049464 EMBL:DAAA02049465 EMBL:DAAA02049466
EMBL:DAAA02049467 EMBL:DAAA02049468 IPI:IPI00708068
Ensembl:ENSBTAT00000008240 Uniprot:F1N700
Length = 432
Score = 101 (40.6 bits), Expect = 0.00013, P = 0.00013
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + T +A A+EK++G + GR + V
Sbjct: 189 MFGQFGKILDVEIIFNERGSK-----GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 243
Query: 61 ASEKYL 66
A+ + +
Sbjct: 244 ATARVM 249
>RGD|1311838 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C. elegans)
2" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0010724 "regulation of definitive erythrocyte differentiation"
evidence=IEA;ISO] [GO:0021942 "radial glia guided migration of
Purkinje cell" evidence=ISO] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048813 "dendrite morphogenesis" evidence=ISO] [GO:0050885
"neuromuscular process controlling balance" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 RGD:1311838
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
CTD:23543 EMBL:BC128766 IPI:IPI00950010 RefSeq:NP_001073364.1
UniGene:Rn.137551 ProteinModelPortal:A1A5R1 SMR:A1A5R1
Ensembl:ENSRNOT00000066431 GeneID:362950 KEGG:rno:362950
UCSC:RGD:1311838 InParanoid:A1A5R1 NextBio:681892
ArrayExpress:A1A5R1 Genevestigator:A1A5R1 Uniprot:A1A5R1
Length = 432
Score = 101 (40.6 bits), Expect = 0.00013, P = 0.00013
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 182 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 236
Query: 61 ASEKYL 66
A+ + +
Sbjct: 237 ATARVM 242
>MGI|MGI:1933973 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C.
elegans) 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IGI;IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IDA] [GO:0021942 "radial glia guided migration of Purkinje
cell" evidence=IMP] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0050885 "neuromuscular process
controlling balance" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933973
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1
OrthoDB:EOG4NVZKS eggNOG:NOG293807 CTD:23543 OMA:HGEQSTN
ChiTaRS:RBFOX2 EMBL:AF387322 EMBL:AY659951 EMBL:AY659952
EMBL:AY659953 EMBL:AF229055 EMBL:AY904025 EMBL:DQ017388
EMBL:DQ017389 EMBL:AK044929 EMBL:AK077594 EMBL:BC002124
EMBL:BC027263 IPI:IPI00153656 IPI:IPI00223425 IPI:IPI00331207
IPI:IPI00606741 IPI:IPI00785326 IPI:IPI00877224 IPI:IPI00877264
IPI:IPI00877283 IPI:IPI00886410 RefSeq:NP_001104297.1
RefSeq:NP_001104298.1 RefSeq:NP_001104299.1 RefSeq:NP_001104300.1
RefSeq:NP_444334.3 RefSeq:NP_780596.1 UniGene:Mm.202774
ProteinModelPortal:Q8BP71 SMR:Q8BP71 STRING:Q8BP71
PhosphoSite:Q8BP71 PaxDb:Q8BP71 PRIDE:Q8BP71
Ensembl:ENSMUST00000048145 Ensembl:ENSMUST00000111581
Ensembl:ENSMUST00000166610 Ensembl:ENSMUST00000171751 GeneID:93686
KEGG:mmu:93686 UCSC:uc007wnc.2 UCSC:uc007wnd.2 UCSC:uc007wne.2
UCSC:uc007wnf.2 UCSC:uc007wng.2 UCSC:uc007wni.2 UCSC:uc011zvf.1
UCSC:uc011zvg.1 NextBio:351415 Bgee:Q8BP71 CleanEx:MM_RBM9
Genevestigator:Q8BP71 Uniprot:Q8BP71
Length = 449
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 199 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 253
Query: 61 ASEKYL 66
A+ + +
Sbjct: 254 ATARVM 259
>UNIPROTKB|F8VZG9 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 IPI:IPI01022127 ProteinModelPortal:F8VZG9 SMR:F8VZG9
Ensembl:ENST00000547372 ArrayExpress:F8VZG9 Bgee:F8VZG9
Uniprot:F8VZG9
Length = 466
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 179 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 233
Query: 61 ASEKYL 66
A+ + +
Sbjct: 234 ATARVM 239
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G+ V+E + + +G R RGF F++++ + +A AK+ M G+ GRPL + A
Sbjct: 61 FSSFGE-VAEVRIAYDKGSGRS--RGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
Query: 62 SEK 64
E+
Sbjct: 118 LER 120
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F PYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FLPYGTITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 98 (39.6 bits), Expect = 0.00017, P = 0.00017
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 131 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 184
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 94 (38.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPR--GFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
+FSP+G+I S R PK+ + + G+AF+E+ TK+EA AK+ + GR LV+
Sbjct: 721 LFSPFGQIKS------MRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVL 774
Query: 59 RLASEKYLEDAAQNSSKA 76
A++ +A + S A
Sbjct: 775 EWANDDNSMEAIRKRSAA 792
Score = 32 (16.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 110 EEESSSAKKQKQA 122
+EE+ +A+K+K +
Sbjct: 795 DEENDNARKRKSS 807
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 98 (39.6 bits), Expect = 0.00019, P = 0.00019
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 147 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 200
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 93 (37.8 bits), Expect = 0.00019, P = 0.00019
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 77 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 134
Query: 62 SEK 64
+K
Sbjct: 135 FKK 137
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSPYG+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 226 MFSPYGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 281
Query: 58 VRLAS---EKYLEDAAQNSSKAVGEANKTGFVGGTSG 91
V+ A +K Q ++ + + N G +G
Sbjct: 282 VKFADTQKDKEQRRLQQQLAQQMQQLNSASAWGSLTG 318
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 102 (41.0 bits), Expect = 0.00021, P = 0.00021
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F P+G I S + W P G + FAF+EY E A LA+E M+G++ GR L V
Sbjct: 122 FDPFGPIKSINMSWD---PATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 106 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 159
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 101 (40.6 bits), Expect = 0.00023, P = 0.00023
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I S + +G +G F F+ Y+T EEA A +M+ R+ G+PL V LA
Sbjct: 384 FSAFGTITSAKIMTDEQGKSKG----FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 62 SEK 64
K
Sbjct: 440 QRK 442
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 99 (39.9 bits), Expect = 0.00024, P = 0.00024
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 146 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 200
Query: 62 SEK 64
K
Sbjct: 201 QRK 203
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 41 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 94
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 69 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 123
Query: 62 SEK 64
K
Sbjct: 124 QRK 126
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S + W K +GFAF+EY E A+LA E+M+G L GR + V
Sbjct: 150 FTPFGPIKSINMSWDPITQKH---KGFAFVEYEIPEGAQLALEQMNGALMGGRNIKV 203
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 315 FSPFGSITSAKVML-----EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
Query: 62 SEK 64
K
Sbjct: 370 QRK 372
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 91 (37.1 bits), Expect = 0.00029, P = 0.00029
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 25 PRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64
P+GFAF+ Y T+EEA A + MHG+ GR + V A +
Sbjct: 117 PKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156
>ZFIN|ZDB-GENE-040923-2 [details] [associations]
symbol:rbfox1l "RNA binding protein, fox-1 homolog
(C. elegans) 1-like" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IGI;IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA;IGI;IDA;IMP] [GO:0048739 "cardiac muscle fiber
development" evidence=IGI] [GO:0048741 "skeletal muscle fiber
development" evidence=IGI] [GO:0008380 "RNA splicing"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040923-2 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048741
GO:GO:0043484 GO:GO:0048739 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 EMBL:AB074763
EMBL:BX511250 IPI:IPI00505620 RefSeq:NP_999940.1 UniGene:Dr.30455
ProteinModelPortal:Q7ZT82 SMR:Q7ZT82 STRING:Q7ZT82 PRIDE:Q7ZT82
Ensembl:ENSDART00000027364 GeneID:407613 KEGG:dre:407613 CTD:407613
InParanoid:Q7ZT82 OMA:LYRGGYN OrthoDB:EOG4CRM0S NextBio:20818492
ArrayExpress:Q7ZT82 Bgee:Q7ZT82 Uniprot:Q7ZT82
Length = 382
Score = 97 (39.2 bits), Expect = 0.00029, P = 0.00029
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + + EA A+EK++G + GR + V
Sbjct: 166 MFGQFGKILDVEIIFNERGSK-----GFGFVTFESAVEADRAREKLNGTIVEGRKIEVNN 220
Query: 61 ASEKYLEDAAQ 71
A+ + + Q
Sbjct: 221 ATARVVTKKPQ 231
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ ++T+ A+ A + MH C P+V
Sbjct: 32 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIV 87
Query: 58 VRLAS---EKYLEDAAQNSSKAVGEANKTGFVGGTSG 91
V+ A +K + AQ + + + + G +G
Sbjct: 88 VKFADTQKDKEQKRIAQQLQQQMQQISAASVWGNLAG 124
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 25/92 (27%), Positives = 51/92 (55%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G++ +F+ + + G RG+ F+++ +A+ A EKM+G GR + V L
Sbjct: 292 VFEPFGEL---EFV-QLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGL 347
Query: 61 ASEKYL-EDAAQNSSKAVGEANKTGFVGGTSG 91
++K+ E+ + S++ ++N G + SG
Sbjct: 348 GNDKFTPENTQRTQSQSANQSNFQGSMFSGSG 379
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 98 (39.6 bits), Expect = 0.00031, P = 0.00031
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FSPYGK++ D + K G+AF+ KE+A+ A E +HG GRPL V L
Sbjct: 102 LFSPYGKVLDCDKV----KTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVEL 157
Query: 61 A 61
+
Sbjct: 158 S 158
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 99 (39.9 bits), Expect = 0.00031, P = 0.00031
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 250 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 304
Query: 62 SEK 64
K
Sbjct: 305 QRK 307
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 99 (39.9 bits), Expect = 0.00033, P = 0.00033
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 269 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 323
Query: 62 SEK 64
K
Sbjct: 324 QRK 326
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 282 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 62 SEK 64
K
Sbjct: 337 QRK 339
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F YG+ V + ++ R K RGFAF+ + K +A+ A + M G + GR L V++
Sbjct: 33 VFEKYGR-VGDVYIPRDRYTKES--RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 96
A +Y + S+ + G GG G+ +RS
Sbjct: 90 A--RYGRPPDSHHSRRGPPPRRYG--GGGYGRRSRS 121
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-R 59
+FS G +VS ++ + G P+G+ F EY +E A A ++GR GR L V
Sbjct: 16 IFSEVGPVVSFRLVYDR---ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 72
Query: 60 LASEKYLED 68
ASEK E+
Sbjct: 73 AASEKNKEE 81
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 98 (39.6 bits), Expect = 0.00035, P = 0.00035
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 106 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 159
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 98 (39.6 bits), Expect = 0.00035, P = 0.00035
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 112 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 165
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 98 (39.6 bits), Expect = 0.00036, P = 0.00036
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 120 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 173
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 98 (39.6 bits), Expect = 0.00036, P = 0.00036
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 120 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 173
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 99 (39.9 bits), Expect = 0.00037, P = 0.00037
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 98 (39.6 bits), Expect = 0.00037, P = 0.00037
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 133 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 186
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 216 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 270
Query: 62 SEK 64
K
Sbjct: 271 QRK 273
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 149 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 202
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 150 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 203
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 154 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 207
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 154 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 207
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 93 (37.8 bits), Expect = 0.00040, P = 0.00040
Identities = 28/88 (31%), Positives = 39/88 (44%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F YG + S +W R P P GFAF+E+ + +A A + GR CGR V L
Sbjct: 27 VFGAYGSLRS---VWIARNP----P-GFAFVEFESARDAADAVRGLDGRTVCGRRARVEL 78
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGG 88
++ KY G G +GG
Sbjct: 79 STGKYARSGGGGGGGGGGGGG--GGLGG 104
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 98 (39.6 bits), Expect = 0.00041, P = 0.00041
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 243 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 297
Query: 62 SEK 64
K
Sbjct: 298 QRK 300
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 98 (39.6 bits), Expect = 0.00044, P = 0.00044
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
FS YG+++ D + R P+GFA++ +S+KEEA+ A +++ +L GR +++
Sbjct: 41 FSQYGQVLKVDVIMDKI---RCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVIL 94
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 98 (39.6 bits), Expect = 0.00046, P = 0.00046
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMMD--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 98 (39.6 bits), Expect = 0.00047, P = 0.00047
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 98 (39.6 bits), Expect = 0.00047, P = 0.00047
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 97 (39.2 bits), Expect = 0.00047, P = 0.00047
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 113 FAPFGPIKSIDMSWDSVTLKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 166
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 95 (38.5 bits), Expect = 0.00047, P = 0.00047
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G+I SE L R + RGFAF+ Y +AK A +M+G+ G+P+ V A
Sbjct: 28 FSKFGRI-SEVLLMKDRETNKS--RGFAFVTYENPGDAKDAAREMNGKPLDGKPIKVEQA 84
Query: 62 SEKYLEDAAQNSS---KAVGEANKT-GFVGGTSG 91
++ E + + ++ G + G GG SG
Sbjct: 85 TKPQFETSGRRGPPPPRSRGPSRGLRGSRGGPSG 118
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 90 (36.7 bits), Expect = 0.00048, P = 0.00048
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FS +GK +S + R P G +GF F+ Y E+A A E+M+G+ G+ + V
Sbjct: 123 LFSQFGKTLSVKVM---RDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 178
Query: 61 ASEKYLEDAAQNSSK 75
A +K +E A+ K
Sbjct: 179 AQKK-VERQAELKRK 192
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 98 (39.6 bits), Expect = 0.00052, P = 0.00052
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 354 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 408
Query: 62 SEK 64
K
Sbjct: 409 QRK 411
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 96 (38.9 bits), Expect = 0.00053, P = 0.00053
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ ++T+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIV 182
Query: 58 VRLAS---EKYLEDAAQNSSKAVGEANKTGFVGGTSG 91
V+ A +K + AQ + + + + G +G
Sbjct: 183 VKFADTQKDKEQKRIAQQLQQQMQQISAASVWGNLAG 219
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 96 (38.9 bits), Expect = 0.00053, P = 0.00053
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ ++T+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIV 182
Query: 58 VRLAS---EKYLEDAAQNSSKAVGEANKTGFVGGTSG 91
V+ A +K + AQ + + + + G +G
Sbjct: 183 VKFADTQKDKEQKRIAQQLQQQMQQISAASVWGNLAG 219
>POMBASE|SPBC428.12c [details] [associations]
symbol:SPBC428.12c "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC428.12c GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q9UNP9 PIR:T40464 RefSeq:NP_595190.1 ProteinModelPortal:O94359
EnsemblFungi:SPBC428.12c.1 GeneID:2540852 KEGG:spo:SPBC428.12c
eggNOG:NOG331137 OrthoDB:EOG4TJ03G NextBio:20801968 Uniprot:O94359
Length = 116
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F P+G+I+S H + ++ V R +AF+E+ E+AK A E M+ + C R + V A
Sbjct: 26 FIPFGEIISVAL--HRK--EKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPA 81
Query: 62 S 62
+
Sbjct: 82 N 82
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 97 (39.2 bits), Expect = 0.00058, P = 0.00058
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+P+G I S + G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FTPFGSITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
>UNIPROTKB|B0QYY7 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z95114 EMBL:AL049748
HOVERGEN:HBG000044 EMBL:AL079295 HGNC:HGNC:9906 ChiTaRS:RBFOX2
HOGENOM:HOG000230971 EMBL:Z82217 IPI:IPI00878853 SMR:B0QYY7
STRING:B0QYY7 Ensembl:ENST00000408983 Uniprot:B0QYY7
Length = 200
Score = 89 (36.4 bits), Expect = 0.00065, P = 0.00065
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG 53
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + G
Sbjct: 153 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEG 200
>UNIPROTKB|E9PL19 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
HGNC:HGNC:17042 IPI:IPI00984548 ProteinModelPortal:E9PL19
SMR:E9PL19 Ensembl:ENST00000533162 ArrayExpress:E9PL19 Bgee:E9PL19
Uniprot:E9PL19
Length = 228
Score = 90 (36.7 bits), Expect = 0.00068, P = 0.00068
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH 47
F+P+G I S D W + K +GFAF+EY E A+LA E+M+
Sbjct: 186 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMN 228
>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
symbol:PFC0865w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 92 (37.4 bits), Expect = 0.00073, P = 0.00073
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-- 58
+FS YG+ + + + R + G +G+ F+ Y+ + LA + +G RPLVV
Sbjct: 55 VFSQYGEPIDVNLV---RDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVDH 111
Query: 59 ----RLASEKYLEDAAQNSSKAVG 78
RL +KYL+DA +N K G
Sbjct: 112 ILNYRLP-KKYLKDADKNEYKPTG 134
>UNIPROTKB|O97318 [details] [associations]
symbol:PFC0865w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 92 (37.4 bits), Expect = 0.00073, P = 0.00073
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-- 58
+FS YG+ + + + R + G +G+ F+ Y+ + LA + +G RPLVV
Sbjct: 55 VFSQYGEPIDVNLV---RDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVDH 111
Query: 59 ----RLASEKYLEDAAQNSSKAVG 78
RL +KYL+DA +N K G
Sbjct: 112 ILNYRLP-KKYLKDADKNEYKPTG 134
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 93 (37.8 bits), Expect = 0.00074, P = 0.00074
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P+ G + FAFI +++ E + A + M+G+ C RP+ V A
Sbjct: 139 FSAFGVILQTPKIM--RDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYA 196
Query: 62 SEK 64
+K
Sbjct: 197 FKK 199
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 96 (38.9 bits), Expect = 0.00076, P = 0.00076
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 324 FSPFGTITSAKVTME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 378
Query: 62 SEK 64
K
Sbjct: 379 QRK 381
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 93 (37.8 bits), Expect = 0.00084, P = 0.00084
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 95 (38.5 bits), Expect = 0.00085, P = 0.00085
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+PYG I S + T + G +GF F+ +ST EEA A + + ++ G+PL V +A
Sbjct: 342 FAPYGTITSAKVM-RT---ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 62 SEK 64
K
Sbjct: 398 QRK 400
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 93 (37.8 bits), Expect = 0.00090, P = 0.00090
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 90 (36.7 bits), Expect = 0.00090, P = 0.00090
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F +G + +D ++ R G PRGF FI++ +A AK +M G L GR L V A
Sbjct: 57 FEQFGPV--KD-IYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
Query: 62 SEKYLEDAAQNSSKAVGEANK 82
E + + G +N+
Sbjct: 114 EENRKKPTEMRTRDRGGRSNR 134
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 93 (37.8 bits), Expect = 0.00092, P = 0.00092
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 93 (37.8 bits), Expect = 0.00092, P = 0.00092
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 93 (37.8 bits), Expect = 0.00092, P = 0.00092
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 93 (37.8 bits), Expect = 0.00092, P = 0.00092
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 93 (37.8 bits), Expect = 0.00092, P = 0.00092
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 93 (37.8 bits), Expect = 0.00092, P = 0.00092
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I+ + R P G +G+AFI +++ + + A E M+G+ C RP+ V A
Sbjct: 120 FSAFGVILQTPKIM--RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 SEK 64
+K
Sbjct: 178 FKK 180
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 95 (38.5 bits), Expect = 0.00095, P = 0.00095
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FSP+G + S + R P G +G F+ ++T EEA A ++ G++ +PL V +
Sbjct: 337 IFSPFGTVTSSKVM---RDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
Query: 61 ASEK 64
A K
Sbjct: 393 AQRK 396
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.127 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 145 119 0.00091 102 3 11 23 0.43 31
29 0.47 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 184
No. of states in DFA: 566 (60 KB)
Total size of DFA: 112 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.97u 0.17s 11.14t Elapsed: 00:00:01
Total cpu time: 10.98u 0.17s 11.15t Elapsed: 00:00:01
Start: Fri May 10 21:11:36 2013 End: Fri May 10 21:11:37 2013
WARNINGS ISSUED: 1