BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032211
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PBM8|RBM18_DANRE Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1
Length = 188
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 14/114 (12%)
Query: 5 YGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64
+GK+ DFL+H GP G PRG+ F+ + TKEEA+ A + ++G+LA + LVVR A
Sbjct: 46 FGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLVVRWAH-- 103
Query: 65 YLEDAAQNSSKAVGEANKTGFVGGTSGQ-------MNRSAKIAAIKNKLKALEE 111
AQ GE N + +S + ++ +AKI AI+ KL+ +EE
Sbjct: 104 -----AQRFEPFRGEKNMPASLEPSSSEAEDLPTSLSVNAKIRAIEAKLQMMEE 152
>sp|Q66J99|RBM18_XENLA Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2
SV=1
Length = 190
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H GP G PRG+ F+ + TK EA+ A ++G++A + LVVR
Sbjct: 44 LLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERAIHCLNGKMALSKKLVVRW 103
Query: 61 AS---EKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEE 111
A ++Y D +N + T ++ SAKI AI+ KLK + E
Sbjct: 104 AHAQIKRY--DNCKNEKVLPISLEPSSSTEPTQSTLSVSAKIKAIEAKLKMMAE 155
>sp|Q5R6W3|RBM18_PONAB Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1
Length = 190
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 AS---EKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEE 111
A ++Y D +N + T ++ +AKI AI+ KLK + E
Sbjct: 104 AHAQVKRY--DHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMMAE 155
>sp|Q96H35|RBM18_HUMAN Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1
Length = 190
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 AS---EKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEE 111
A ++Y D +N + T ++ +AKI AI+ KLK + E
Sbjct: 104 AHAQVKRY--DHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMMAE 155
>sp|Q9CR83|RBM18_MOUSE Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1
Length = 190
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +GK+ DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 AS---EKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEE 111
A ++Y D +N + ++ +AKI AI+ KLK + E
Sbjct: 104 AHAQVKRY--DHNKNDKILPISLEPSSSTEPAQSNLSVTAKIKAIEAKLKMMAE 155
>sp|Q3ZCC5|RBM18_BOVIN Probable RNA-binding protein 18 OS=Bos taurus GN=RBM18 PE=2 SV=1
Length = 190
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+ +G + DFL+H G G PRG+ F+ + TK+EA+ A + ++G+LA + LVVR
Sbjct: 44 LLQKFGTVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRW 103
Query: 61 AS---EKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEE 111
A ++Y D +N + ++ +AKI AI+ KLK + E
Sbjct: 104 AHAQVKRY--DHNKNDKILPISLEPSSSTEPAQSNLSVTAKIKAIEAKLKMMAE 155
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MFS YG + S + +++G + RGF F+ YS EEA LA ++M+G++ +PL V L
Sbjct: 361 MFSEYGNVTSCKVMMNSQG----LSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 61 ASEK 64
A K
Sbjct: 417 AQRK 420
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+P+G I S + R P GV RGF F+ YS EEA A +M+G++ RPL V LA
Sbjct: 350 FAPFGAITSCKIM---RAPS-GVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALA 405
Query: 62 SEK 64
K
Sbjct: 406 QRK 408
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSS-KAVGEANKTGFVGGTSGQMNRSAKIA 100
+E+ DA+ SS E +TG GT+G++ A++A
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRLQLMARLA 364
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSS-KAVGEANKTGFVGGTSGQMNRSAKIA 100
+E+ DA+ SS E +TG GT+G++ A++A
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRLQLMARLA 364
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+F P+G+I S + + + G +G+ FI +S E AK A E+++G GRP+ V
Sbjct: 269 IFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Query: 61 ASEKYLEDAAQNSS-KAVGEANKTGFVGGTSGQMNRSAKIA 100
+E+ DA+ SS E +TG GT+G++ A++A
Sbjct: 326 VTER--TDASSASSFLDSDELERTGIDLGTTGRLQLMARLA 364
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MFS YG + S + + +G+ RGF F+ YS EEA A +M+G++ +PL + L
Sbjct: 351 MFSEYGNVTSSKVMLN----PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 61 ASEK 64
A K
Sbjct: 407 AQRK 410
>sp|Q6P0B1|CELF2_DANRE CUGBP Elav-like family member 2 OS=Danio rerio GN=celf2 PE=2 SV=1
Length = 514
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSPYG+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 155 MFSPYGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 210
Query: 58 VRLASEK 64
V+ A +
Sbjct: 211 VKFADTQ 217
>sp|O57406|CEL1A_XENLA CUGBP Elav-like family member 1-A OS=Xenopus laevis GN=cugbp1-a
PE=1 SV=1
Length = 489
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH---GRLACGRPLV 57
MFSP+G+I L RGP G+ RG AF+ ++T+ A++A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GMSRGCAFVTFTTRSMAQMAIKSMHQAQTMEGCSSPIV 182
Query: 58 VRLASEK 64
V+ A +
Sbjct: 183 VKFADTQ 189
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGTITSTKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FS +G +S + G RG F F+ Y EEA+ A +M+G+ GR + V
Sbjct: 210 IFSAFGNTLSVKVMMDNSGRSRG----FGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGR 265
Query: 61 ASEK 64
A ++
Sbjct: 266 AQKR 269
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGTITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FS +G +S + G RG F F+ Y EEA+ A +M+G+ GR + V
Sbjct: 210 IFSAFGNTLSVKVMMDDTGRSRG----FGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265
Query: 61 ASEK 64
A ++
Sbjct: 266 AQKR 269
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
FS +G I+S + G RG+ F+ + T+E A A + M+G L R + V
Sbjct: 119 FSAFGNILSCKVVCDEHGS-----RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVV 58
+F YG+IV ++ L R G PRG AFI ++ +EEA+ A ++ + G +PL V
Sbjct: 183 IFGKYGQIVQKNIL---RDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTV 239
Query: 59 RLASE 63
R+A E
Sbjct: 240 RVAEE 244
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+P+G I S + G +G F F+ YS+ EEA A +M+ RL G+PL V LA
Sbjct: 350 FAPHGTITSAKVMVDEAGKSKG----FGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLA 405
Query: 62 SEK 64
K
Sbjct: 406 QRK 408
>sp|P56821|EIF3B_TOBAC Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana
tabacum GN=TIF3B1 PE=2 SV=1
Length = 719
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHG 48
++S G ++ ED LW P+ G+ FIEY+T +EA+L+KEK HG
Sbjct: 85 IYSQLG-VIKEDGLWMPVDPETHKTLGYCFIEYNTPQEAELSKEKTHG 131
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSPYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPYGVITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FS +GK++S + G R F F+ + EEA+ A M+G+ GR L
Sbjct: 210 LFSQFGKMLSVKVMRDNSGHSRC----FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGR 265
Query: 61 ASEK 64
A ++
Sbjct: 266 AQKR 269
>sp|Q792H5|CELF2_RAT CUGBP Elav-like family member 2 OS=Rattus norvegicus GN=Celf2 PE=2
SV=1
Length = 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 151 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 58 VRLASEK 64
V+ A +
Sbjct: 207 VKFADTQ 213
>sp|Q9Z0H4|CELF2_MOUSE CUGBP Elav-like family member 2 OS=Mus musculus GN=Celf2 PE=1 SV=1
Length = 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 151 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 58 VRLASEK 64
V+ A +
Sbjct: 207 VKFADTQ 213
>sp|A4IIM2|CELF2_XENTR CUGBP Elav-like family member 2 OS=Xenopus tropicalis GN=celf2 PE=2
SV=1
Length = 513
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 146 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 201
Query: 58 VRLASEK 64
V+ A +
Sbjct: 202 VKFADTQ 208
>sp|Q5R8Y8|CELF2_PONAB CUGBP Elav-like family member 2 OS=Pongo abelii GN=CELF2 PE=2 SV=2
Length = 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 151 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 58 VRLASEK 64
V+ A +
Sbjct: 207 VKFADTQ 213
>sp|O95319|CELF2_HUMAN CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1
Length = 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 151 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 58 VRLASEK 64
V+ A +
Sbjct: 207 VKFADTQ 213
>sp|Q7ZXE2|CELF2_XENLA CUGBP Elav-like family member 2 OS=Xenopus laevis GN=celf2 PE=1
SV=1
Length = 536
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 169 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 58 VRLASEK 64
V+ A +
Sbjct: 225 VKFADTQ 231
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 148 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 202
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEEESSSAKKQK 120
A+ + + + + A G K++ + + E ++S+
Sbjct: 203 ATARVMTNKKMVTPYANGW------------------KLSPVVGAVYGPELYAASS---F 241
Query: 121 QADNSSCNGSLNCLSGKDGLNNL 143
QAD S N + LSG+ G+N
Sbjct: 242 QADVSLGNDAAVPLSGRGGINTY 264
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGSITSAKVMLED-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FS +GK +S + R P G +GF F+ Y E+A A E+M+G+ G+ + V
Sbjct: 210 LFSQFGKTLSVKVM---RDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 61 ASEK 64
A +K
Sbjct: 266 AQKK 269
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-RL 60
FS +G I+S + G K G+AF+ + T+E A A EKM+G L R + V R
Sbjct: 119 FSAFGNILSCKVVCDENGSK-----GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 61 ASEK 64
S K
Sbjct: 174 KSRK 177
>sp|Q9IBD0|CELF1_DANRE CUGBP Elav-like family member 1 OS=Danio rerio GN=celf1 PE=1 SV=1
Length = 501
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSPYG+I L RGP G+ RG AF+ ++ ++ A+ A + MH C P+V
Sbjct: 127 MFSPYGQIEECRIL---RGPD-GLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIV 182
Query: 58 VRLASEK 64
V+ A +
Sbjct: 183 VKFADTQ 189
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 140 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 194
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEEESSSAKKQK 120
A+ + + + + A G K++ + + E ++S+
Sbjct: 195 ATARVMTNKKMVTPYANGW------------------KLSPVVGAVYGPELYAASS---F 233
Query: 121 QADNSSCNGSLNCLSGKDGLNNL 143
QAD S N + LSG+ G+N
Sbjct: 234 QADVSLGNDAAVPLSGRGGINTY 256
>sp|Q7T2T1|CELF2_CHICK CUGBP Elav-like family member 2 OS=Gallus gallus GN=CELF2 PE=1 SV=2
Length = 484
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ +ST+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 58 VRLASEK 64
V+ A +
Sbjct: 183 VKFADTQ 189
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 3 SPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
S +G I+S + + G K G+ F+ + T E A+ A +KM+G L GR + V
Sbjct: 120 SAFGNILSCNVVCDENGSK-----GYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-RL 60
FS +G I+S + G K G+ F+ + T+E A+ A EKM+G L R + V R
Sbjct: 119 FSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 61 ASEK 64
S K
Sbjct: 174 KSRK 177
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-RL 60
FS +G I+S + G K G+ F+ + T+E A+ A EKM+G L R + V R
Sbjct: 119 FSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 61 ASEK 64
S K
Sbjct: 174 KSRK 177
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-RL 60
FS +G I+S + G K G+ F+ + T+E A+ A EKM+G L R + V R
Sbjct: 119 FSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 61 ASEK 64
S K
Sbjct: 174 KSRK 177
>sp|Q5F3T7|CELF1_CHICK CUGBP Elav-like family member 1 OS=Gallus gallus GN=CELF1 PE=1 SV=2
Length = 489
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFSP+G+I L RGP G+ RG AF+ ++T+ A+ A + MH C P+V
Sbjct: 127 MFSPFGQIEECRIL---RGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIV 182
Query: 58 VRLASEK 64
V+ A +
Sbjct: 183 VKFADTQ 189
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-RL 60
FS +G I+S + G K G+ F+ + T+E A+ A EKM+G L R + V R
Sbjct: 119 FSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 61 ASEK 64
S K
Sbjct: 174 KSRK 177
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FSP+G I S + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-RL 60
FS +G I+S + G K G+ F+ + T+E A+ A EKM+G L R + V R
Sbjct: 119 FSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 61 ASEK 64
S K
Sbjct: 174 KSRK 177
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
FS +G I S + +G +G F F+ Y+T EEA A +M+ R+ G+PL V LA
Sbjct: 384 FSAFGTITSAKIMTDEQGKSKG----FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 62 SEK 64
K
Sbjct: 440 QRK 442
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F P+G I S + G +G F F+ +ST EEA A +M+ R+ G+PL V LA
Sbjct: 371 FKPFGTITSSKVMVDDAGKSKG----FGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 426
Query: 62 SEK 64
K
Sbjct: 427 QRK 429
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
FS +GKI+S G + F F+ Y T+E A+ A E ++G L R + V
Sbjct: 175 FSAFGKILSVKVATDDLGQSKC----FGFVHYETEEAAQAAIESVNGMLLNDREVYV 227
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
MF +GKI+ + +++ RG K GF F+ + +A A+EK+HG + GR + V
Sbjct: 182 MFGQFGKILDVEIIFNERGSK-----GFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 236
Query: 61 ASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEEESSSAKKQK 120
A+ + + + + A G K++ + + E ++S+
Sbjct: 237 ATARVMTNKKMVTPYANG------------------WKLSPVVGAVYGPELYAASS---F 275
Query: 121 QADNSSCNGSLNCLSGKDGLNNL 143
QAD S N + LSG+ G+N
Sbjct: 276 QADVSLGNEAAVPLSGRGGINTY 298
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F PYG I S + T G G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FLPYGTITSAKVM--TEG---GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60
+FS +G +S + G RG F F+ Y EEA+ A +M+G+ GR + V
Sbjct: 210 IFSAFGNTLSVKVMMDDSGRSRG----FGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265
Query: 61 ASEK 64
A ++
Sbjct: 266 AQKR 269
>sp|Q28HE9|CELF1_XENTR CUGBP Elav-like family member 1 OS=Xenopus tropicalis GN=celf1 PE=2
SV=1
Length = 490
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLV 57
MFS +G+I L RGP G+ RG AF+ ++T+ A++A + MH C P+V
Sbjct: 127 MFSQFGQIEESRIL---RGPD-GMSRGCAFVTFTTRSMAQMAIKAMHQAQTMEGCSSPIV 182
Query: 58 VRLASEK 64
V+ A +
Sbjct: 183 VKFADTQ 189
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVV 58
+F YG IV ++ L R G PRG AF+ Y+ +EEA+ A ++ + G +PL V
Sbjct: 232 IFGKYGSIVQKNIL---RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 288
Query: 59 RLASE 63
RLA E
Sbjct: 289 RLAQE 293
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVV 58
+F YG IV ++ L R G PRG AF+ ++ +EEA+ A ++ + G +PL V
Sbjct: 207 IFGKYGNIVQKNIL---RDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTV 263
Query: 59 RLASE 63
RLA E
Sbjct: 264 RLAEE 268
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61
F+P+G I S + + G +GF F+ +S+ EEA A +M+GR+ +PL V LA
Sbjct: 314 FTPFGSITSAKVMM-----EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 62 SEK 64
K
Sbjct: 369 QRK 371
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV-RL 60
FS +G I+S + G K G+ F+ + T+E A+ A +KM+G L R + V R
Sbjct: 119 FSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173
Query: 61 ASEKYLE 67
S K E
Sbjct: 174 KSRKERE 180
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 23 GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64
G RGF F+ + E+A+ A + M+G+ G+ + V A +K
Sbjct: 228 GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S + W P +GFAF+EY E A+LA E+M+G L GR + V
Sbjct: 150 FTPFGPIKSINMSWD---PITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKV 203
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVV 58
F+P+G I S D W + K +GFAF+EY E A+LA E+M+ + GR + V
Sbjct: 120 FAPFGPIKSIDMSWDSVTMKH---KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 173
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVV 58
+F YG IV ++ L R G PRG AF+ ++ +EEA+ A ++ + G +PL V
Sbjct: 190 IFGKYGNIVQKNIL---RDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTV 246
Query: 59 RLASE 63
RLA E
Sbjct: 247 RLAEE 251
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVV 58
+F YG IV ++ L R G PRG AF+ Y+ +EEA+ A ++ + G +PL V
Sbjct: 230 IFGKYGSIVQKNIL---RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 286
Query: 59 RLASE 63
RLA E
Sbjct: 287 RLAEE 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,260,641
Number of Sequences: 539616
Number of extensions: 1812986
Number of successful extensions: 6376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 5842
Number of HSP's gapped (non-prelim): 698
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)