Query 032211
Match_columns 145
No_of_seqs 192 out of 1929
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 5.1E-17 1.8E-21 108.3 6.9 60 1-63 39-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.7 2.1E-16 7.1E-21 107.3 7.6 65 1-68 26-90 (110)
3 3ns6_A Eukaryotic translation 99.6 2.2E-16 7.6E-21 105.1 3.9 63 1-66 32-95 (100)
4 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.3E-15 4.3E-20 98.1 6.8 62 1-65 26-87 (87)
5 3md1_A Nuclear and cytoplasmic 99.6 2E-15 6.9E-20 96.3 7.6 62 1-65 21-82 (83)
6 2cq0_A Eukaryotic translation 99.6 4.3E-15 1.5E-19 98.8 8.6 65 1-68 35-99 (103)
7 2dgo_A Cytotoxic granule-assoc 99.6 3.1E-15 1.1E-19 101.3 7.8 65 1-68 35-99 (115)
8 3p5t_L Cleavage and polyadenyl 99.6 4.3E-16 1.5E-20 101.6 3.0 65 1-68 21-87 (90)
9 2cpi_A CCR4-NOT transcription 99.6 7E-15 2.4E-19 99.4 8.6 62 1-65 38-102 (111)
10 2x1f_A MRNA 3'-END-processing 99.6 3.6E-15 1.2E-19 98.0 7.0 65 1-68 22-86 (96)
11 2dnz_A Probable RNA-binding pr 99.6 4.1E-15 1.4E-19 97.3 7.0 65 1-68 25-89 (95)
12 2lkz_A RNA-binding protein 5; 99.6 1.3E-15 4.5E-20 101.0 4.6 60 1-63 29-94 (95)
13 1p27_B RNA-binding protein 8A; 99.6 2.7E-15 9.2E-20 100.1 6.1 62 1-65 43-104 (106)
14 1whw_A Hypothetical protein ri 99.6 2.8E-15 9.6E-20 98.9 6.1 65 1-68 28-92 (99)
15 2lxi_A RNA-binding protein 10; 99.6 3.2E-16 1.1E-20 102.8 1.0 64 1-67 21-86 (91)
16 2dgs_A DAZ-associated protein 99.6 5.4E-15 1.9E-19 97.6 6.8 64 1-68 30-93 (99)
17 1oo0_B CG8781-PA, drosophila Y 99.6 4.5E-15 1.5E-19 99.7 6.1 63 1-66 46-108 (110)
18 2e5h_A Zinc finger CCHC-type a 99.6 8.5E-15 2.9E-19 95.6 7.2 59 1-62 36-94 (94)
19 2do4_A Squamous cell carcinoma 99.6 7.6E-15 2.6E-19 97.0 6.9 62 1-66 37-98 (100)
20 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.6E-15 8.9E-20 99.5 4.6 65 1-68 32-96 (102)
21 2fy1_A RNA-binding motif prote 99.6 6.9E-15 2.4E-19 100.4 6.7 64 1-68 27-90 (116)
22 2jrs_A RNA-binding protein 39; 99.6 4.7E-15 1.6E-19 100.0 5.6 62 1-65 46-107 (108)
23 3mdf_A Peptidyl-prolyl CIS-tra 99.5 4.5E-15 1.5E-19 95.1 5.2 59 1-62 27-85 (85)
24 2do0_A HnRNP M, heterogeneous 99.5 1.7E-14 5.7E-19 97.4 8.3 64 1-68 35-98 (114)
25 2cpz_A CUG triplet repeat RNA- 99.5 4.7E-15 1.6E-19 100.5 5.5 65 1-68 45-109 (115)
26 2cqc_A Arginine/serine-rich sp 99.5 7.5E-15 2.6E-19 95.9 6.3 60 1-63 35-94 (95)
27 1x5t_A Splicing factor 3B subu 99.5 3.1E-15 1.1E-19 98.1 4.3 65 1-68 25-90 (96)
28 2d9p_A Polyadenylate-binding p 99.5 1.7E-14 5.9E-19 95.8 7.8 63 1-68 35-97 (103)
29 1x5u_A Splicing factor 3B subu 99.5 5.9E-15 2E-19 98.3 5.4 64 1-67 35-98 (105)
30 2dnm_A SRP46 splicing factor; 99.5 4.1E-15 1.4E-19 98.9 4.6 65 1-68 33-97 (103)
31 2pe8_A Splicing factor 45; RRM 99.5 1.9E-14 6.4E-19 97.0 7.8 64 1-67 33-97 (105)
32 4f25_A Polyadenylate-binding p 99.5 9.9E-15 3.4E-19 99.3 6.2 63 1-68 25-87 (115)
33 2cpf_A RNA binding motif prote 99.5 7E-15 2.4E-19 96.8 5.2 68 1-68 25-92 (98)
34 1p1t_A Cleavage stimulation fa 99.5 4.4E-15 1.5E-19 98.6 4.3 65 1-68 28-92 (104)
35 2la6_A RNA-binding protein FUS 99.5 1.2E-14 4.1E-19 96.0 6.2 59 1-62 33-99 (99)
36 2kxn_B Transformer-2 protein h 99.5 8.9E-15 3E-19 101.8 5.8 62 1-65 66-127 (129)
37 2cph_A RNA binding motif prote 99.5 1.2E-14 4E-19 97.0 6.0 65 1-68 35-101 (107)
38 2dnh_A Bruno-like 5, RNA bindi 99.5 1.6E-14 5.5E-19 96.2 6.6 64 1-68 35-101 (105)
39 2a3j_A U1 small nuclear ribonu 99.5 5.5E-15 1.9E-19 102.9 4.4 62 1-68 53-114 (127)
40 3n9u_C Cleavage and polyadenyl 99.5 8.7E-15 3E-19 105.1 5.6 65 1-68 75-141 (156)
41 1x5s_A Cold-inducible RNA-bind 99.5 4.6E-15 1.6E-19 98.3 3.7 65 1-68 32-96 (102)
42 2khc_A Testis-specific RNP-typ 99.5 1.4E-14 4.8E-19 98.5 6.1 59 1-62 60-118 (118)
43 1x4h_A RNA-binding protein 28; 99.5 1.2E-14 4.2E-19 97.5 5.6 65 1-68 35-105 (111)
44 3ucg_A Polyadenylate-binding p 99.5 1.7E-14 6E-19 93.1 5.9 60 1-64 26-85 (89)
45 3ex7_B RNA-binding protein 8A; 99.5 1E-14 3.4E-19 100.3 5.0 65 1-68 42-106 (126)
46 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2E-14 6.9E-19 103.4 6.6 65 1-68 92-156 (165)
47 2dng_A Eukaryotic translation 99.5 3.2E-14 1.1E-18 94.6 7.0 63 1-68 35-97 (103)
48 2cq4_A RNA binding motif prote 99.5 8.5E-15 2.9E-19 99.1 4.2 64 1-68 45-108 (114)
49 2cpe_A RNA-binding protein EWS 99.5 1.5E-14 5.1E-19 97.6 5.4 65 1-68 35-107 (113)
50 2cqd_A RNA-binding region cont 99.5 3.2E-14 1.1E-18 96.5 7.0 64 1-68 37-100 (116)
51 3ulh_A THO complex subunit 4; 99.5 3E-14 1E-18 95.1 6.8 58 1-62 49-106 (107)
52 4a8x_A RNA-binding protein wit 99.5 1.1E-14 3.7E-19 93.8 4.3 62 1-65 24-86 (88)
53 1wi8_A EIF-4B, eukaryotic tran 99.5 3.2E-14 1.1E-18 94.7 6.7 63 1-68 35-98 (104)
54 2dgp_A Bruno-like 4, RNA bindi 99.5 1.1E-14 3.7E-19 97.2 4.0 64 1-67 33-99 (106)
55 2ki2_A SS-DNA binding protein 99.5 6.7E-15 2.3E-19 95.4 2.9 64 1-68 21-84 (90)
56 2div_A TRNA selenocysteine ass 99.5 1.4E-14 4.7E-19 95.5 4.3 63 1-66 29-96 (99)
57 2ywk_A Putative RNA-binding pr 99.5 3.2E-14 1.1E-18 92.9 6.0 59 1-63 36-94 (95)
58 2wbr_A GW182, gawky, LD47780P; 99.5 1.5E-14 5.2E-19 94.7 4.3 53 1-62 27-79 (89)
59 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.4E-14 8.3E-19 95.0 5.4 60 1-65 39-99 (100)
60 2cqp_A RNA-binding protein 12; 99.5 1.6E-14 5.6E-19 95.0 4.5 61 1-64 35-95 (98)
61 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.1E-14 1.4E-18 100.7 6.9 65 1-68 59-123 (156)
62 1x5o_A RNA binding motif, sing 99.5 9.3E-14 3.2E-18 93.8 8.2 60 1-64 45-112 (114)
63 1u6f_A Tcubp1, RNA-binding pro 99.5 1.4E-14 4.7E-19 101.1 4.1 65 1-68 62-126 (139)
64 2jwn_A Embryonic polyadenylate 99.5 3.6E-14 1.2E-18 97.2 6.0 62 1-66 56-117 (124)
65 2kn4_A Immunoglobulin G-bindin 99.5 1.7E-14 5.8E-19 102.6 4.3 64 1-67 90-153 (158)
66 2dgx_A KIAA0430 protein; RRM d 99.5 2.5E-14 8.4E-19 94.2 4.8 60 1-66 33-92 (96)
67 2dhg_A TRNA selenocysteine ass 99.5 1.6E-14 5.4E-19 96.0 3.8 64 1-68 29-94 (104)
68 1x4e_A RNA binding motif, sing 99.5 1.8E-14 6.3E-19 92.4 3.7 59 1-62 25-83 (85)
69 2mss_A Protein (musashi1); RNA 99.5 1.3E-14 4.4E-19 91.0 2.9 57 1-61 19-75 (75)
70 2ek1_A RNA-binding protein 12; 99.5 2.6E-14 8.9E-19 93.4 4.5 60 1-63 35-94 (95)
71 1jmt_A Splicing factor U2AF 35 99.5 5.2E-14 1.8E-18 94.6 5.9 55 3-61 49-103 (104)
72 2m2b_A RNA-binding protein 10; 99.5 1.2E-14 4.1E-19 101.0 2.7 62 1-66 43-110 (131)
73 2dh8_A DAZ-associated protein 99.5 2.2E-14 7.6E-19 95.6 3.7 64 1-68 36-99 (105)
74 2kt5_A RNA and export factor-b 99.5 5.8E-14 2E-18 96.3 5.9 64 1-68 55-118 (124)
75 2rs2_A Musashi-1, RNA-binding 99.5 6.4E-14 2.2E-18 94.5 5.9 62 1-66 45-106 (109)
76 2cq3_A RNA-binding protein 9; 99.5 1.4E-13 4.9E-18 91.3 7.4 63 1-68 35-97 (103)
77 3v4m_A Splicing factor U2AF 65 99.5 8.7E-14 3E-18 93.7 6.3 64 1-67 35-100 (105)
78 2dgv_A HnRNP M, heterogeneous 99.5 5.2E-14 1.8E-18 91.4 5.0 61 1-66 28-88 (92)
79 3s7r_A Heterogeneous nuclear r 99.5 9.6E-14 3.3E-18 89.4 6.1 57 1-61 31-87 (87)
80 1x4b_A Heterogeneous nuclear r 99.5 4.8E-14 1.6E-18 95.6 4.9 64 1-68 47-110 (116)
81 1s79_A Lupus LA protein; RRM, 99.5 5.2E-14 1.8E-18 94.4 4.8 62 1-67 31-92 (103)
82 4f02_A Polyadenylate-binding p 99.5 7.7E-14 2.6E-18 103.9 6.2 64 1-69 123-186 (213)
83 2nlw_A Eukaryotic translation 99.5 2.8E-14 9.7E-19 95.5 3.3 59 1-64 41-100 (105)
84 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 5.9E-14 2E-18 97.6 4.9 58 1-61 83-140 (140)
85 2cpy_A RNA-binding protein 12; 99.4 6.8E-14 2.3E-18 94.9 5.0 64 1-69 35-99 (114)
86 2dis_A Unnamed protein product 99.4 6.9E-14 2.4E-18 93.6 4.9 66 1-68 28-96 (109)
87 2lea_A Serine/arginine-rich sp 99.4 2.8E-14 9.5E-19 99.9 2.9 65 1-68 67-131 (135)
88 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.1E-13 3.6E-18 91.9 5.6 62 1-67 35-96 (103)
89 2cqg_A TDP-43, TAR DNA-binding 99.4 1.5E-13 5.1E-18 91.2 5.9 63 1-68 35-97 (103)
90 1x4a_A Splicing factor, argini 99.4 1.3E-13 4.5E-18 92.5 5.7 61 1-67 42-102 (109)
91 1uaw_A Mouse-musashi-1; RNP-ty 99.4 4.7E-14 1.6E-18 88.7 3.3 57 1-61 20-76 (77)
92 3md3_A Nuclear and cytoplasmic 99.4 3E-13 1E-17 95.4 7.5 60 1-63 107-166 (166)
93 3q2s_C Cleavage and polyadenyl 99.4 5.6E-14 1.9E-18 106.6 3.9 64 1-67 88-153 (229)
94 1nu4_A U1A RNA binding domain; 99.4 5.2E-14 1.8E-18 92.3 3.2 62 1-68 32-93 (97)
95 2err_A Ataxin-2-binding protei 99.4 1.1E-13 3.7E-18 93.3 4.8 60 1-65 49-108 (109)
96 2qfj_A FBP-interacting repress 99.4 2.4E-13 8.1E-18 100.1 7.0 65 1-68 145-209 (216)
97 2lcw_A RNA-binding protein FUS 99.1 1.3E-14 4.6E-19 98.5 0.0 65 1-68 27-99 (116)
98 3ue2_A Poly(U)-binding-splicin 99.4 3.3E-13 1.1E-17 92.8 6.9 64 2-65 46-110 (118)
99 2krb_A Eukaryotic translation 99.4 4.7E-14 1.6E-18 90.0 2.3 53 1-58 27-80 (81)
100 1x5p_A Negative elongation fac 99.4 2.6E-13 8.8E-18 89.3 5.9 59 1-68 33-91 (97)
101 2j8a_A Histone-lysine N-methyl 99.4 8.4E-14 2.9E-18 97.2 3.6 63 1-66 26-98 (136)
102 2db1_A Heterogeneous nuclear r 99.4 2.3E-13 7.7E-18 93.1 5.7 63 1-68 37-102 (118)
103 2dgw_A Probable RNA-binding pr 99.4 2.5E-13 8.7E-18 88.1 5.6 59 1-65 30-88 (91)
104 1x4d_A Matrin 3; structural ge 99.4 3E-13 1E-17 90.8 6.1 57 1-66 36-94 (102)
105 2dit_A HIV TAT specific factor 99.4 3.7E-13 1.3E-17 91.1 6.2 60 1-67 46-105 (112)
106 3lqv_A PRE-mRNA branch site pr 99.4 2.5E-13 8.7E-18 91.8 5.3 60 1-66 28-87 (115)
107 1whx_A Hypothetical protein ri 99.4 2.1E-13 7.2E-18 92.3 4.5 57 1-66 30-86 (111)
108 3r27_A HnRNP L, heterogeneous 99.4 3.8E-13 1.3E-17 90.0 5.4 56 1-65 41-98 (100)
109 1wez_A HnRNP H', FTP-3, hetero 99.4 4.5E-13 1.5E-17 89.5 5.6 59 1-65 35-93 (102)
110 2cq1_A PTB-like protein L; RRM 99.4 1.5E-12 5E-17 87.1 7.9 59 1-68 35-95 (101)
111 1wel_A RNA-binding protein 12; 99.4 5.6E-14 1.9E-18 96.6 1.0 63 1-67 45-107 (124)
112 2fc9_A NCL protein; structure 99.4 5.9E-13 2E-17 88.0 5.9 60 1-67 35-94 (101)
113 2lmi_A GRSF-1, G-rich sequence 99.4 1.8E-13 6.1E-18 91.8 3.1 63 1-68 31-96 (107)
114 2cjk_A Nuclear polyadenylated 99.4 2.7E-13 9.2E-18 96.1 4.1 60 1-64 107-166 (167)
115 3pgw_S U1-70K; protein-RNA com 99.4 1E-12 3.4E-17 108.2 8.0 64 1-67 122-185 (437)
116 2g4b_A Splicing factor U2AF 65 99.4 6E-13 2E-17 94.7 5.8 59 1-62 114-172 (172)
117 1wg5_A Heterogeneous nuclear r 99.4 7.1E-13 2.4E-17 88.4 5.8 60 1-65 35-95 (104)
118 2fc8_A NCL protein; structure 99.4 1.8E-12 6E-17 85.7 7.6 61 1-67 35-95 (102)
119 1l3k_A Heterogeneous nuclear r 99.4 9.6E-13 3.3E-17 95.5 6.8 64 1-68 124-187 (196)
120 1x4f_A Matrin 3; structural ge 99.4 6.7E-13 2.3E-17 90.6 5.5 59 1-68 46-106 (112)
121 2dgu_A Heterogeneous nuclear r 99.4 7E-13 2.4E-17 88.1 5.5 57 1-68 31-87 (103)
122 1why_A Hypothetical protein ri 99.4 7.2E-13 2.5E-17 87.0 5.5 57 1-66 37-95 (97)
123 2cpj_A Non-POU domain-containi 99.4 6.9E-13 2.4E-17 87.4 5.4 58 1-67 35-92 (99)
124 2e5j_A Methenyltetrahydrofolat 99.4 2.3E-13 7.7E-18 89.6 3.0 57 1-65 39-95 (97)
125 2yh0_A Splicing factor U2AF 65 99.4 6.3E-13 2.1E-17 96.6 5.5 62 1-65 134-195 (198)
126 2hvz_A Splicing factor, argini 99.4 4.4E-13 1.5E-17 88.6 4.3 60 1-68 20-79 (101)
127 1fxl_A Paraneoplastic encephal 99.4 1.7E-12 5.9E-17 91.5 7.6 64 1-67 22-85 (167)
128 1sjq_A Polypyrimidine tract-bi 99.4 2.5E-13 8.4E-18 91.7 3.0 59 1-68 36-96 (105)
129 2jvr_A Nucleolar protein 3; RN 99.4 3.2E-13 1.1E-17 91.9 3.5 58 1-65 48-106 (111)
130 3egn_A RNA-binding protein 40; 99.4 6.2E-14 2.1E-18 98.4 -0.1 68 1-68 65-134 (143)
131 1x4g_A Nucleolysin TIAR; struc 99.4 5.5E-13 1.9E-17 89.5 4.6 59 1-68 45-103 (109)
132 2cpx_A Hypothetical protein FL 99.4 4.2E-13 1.4E-17 90.6 3.8 65 1-68 45-109 (115)
133 1iqt_A AUF1, heterogeneous nuc 99.3 9.8E-14 3.4E-18 86.8 0.6 57 1-61 19-75 (75)
134 2f3j_A RNA and export factor b 99.3 6E-13 2.1E-17 97.2 4.9 63 1-67 108-170 (177)
135 3s6e_A RNA-binding protein 39; 99.3 1.8E-12 6E-17 88.7 6.9 61 1-68 37-97 (114)
136 2la4_A Nuclear and cytoplasmic 99.3 3.7E-13 1.3E-17 89.0 3.4 55 1-64 47-101 (101)
137 2hgl_A HNRPF protein, heteroge 99.3 4.7E-13 1.6E-17 94.1 3.9 62 1-67 64-128 (136)
138 1fj7_A Nucleolin RBD1, protein 99.3 3.4E-14 1.2E-18 94.1 -1.8 62 1-67 37-98 (101)
139 1wex_A Hypothetical protein (r 99.3 8.8E-13 3E-17 88.6 5.1 58 1-67 35-94 (104)
140 2ytc_A PRE-mRNA-splicing facto 99.3 9.9E-13 3.4E-17 84.1 5.1 53 1-62 32-85 (85)
141 2xnq_A Nuclear polyadenylated 99.3 1.8E-12 6.1E-17 85.6 6.3 54 1-65 43-96 (97)
142 2bz2_A Negative elongation fac 99.3 8.7E-13 3E-17 90.7 4.9 59 1-68 57-115 (121)
143 2dnq_A RNA-binding protein 4B; 99.3 1.3E-12 4.4E-17 84.7 5.5 57 1-68 28-84 (90)
144 2ad9_A Polypyrimidine tract-bi 99.3 9.8E-13 3.3E-17 90.6 5.1 59 1-68 51-111 (119)
145 1sjr_A Polypyrimidine tract-bi 99.3 1.2E-12 4.2E-17 94.8 5.4 60 1-67 66-127 (164)
146 2xs2_A Deleted in azoospermia- 99.3 4.6E-13 1.6E-17 88.6 2.8 62 1-68 29-90 (102)
147 1b7f_A Protein (SXL-lethal pro 99.3 1.4E-12 4.8E-17 92.3 5.5 63 1-66 23-85 (168)
148 1b7f_A Protein (SXL-lethal pro 99.3 2.5E-12 8.4E-17 91.0 6.7 58 1-61 109-168 (168)
149 2dnn_A RNA-binding protein 12; 99.3 2.7E-12 9.4E-17 86.9 6.5 61 1-67 36-96 (109)
150 2kvi_A Nuclear polyadenylated 99.3 1.3E-12 4.4E-17 85.8 4.7 57 1-68 31-87 (96)
151 3zzy_A Polypyrimidine tract-bi 99.3 3.3E-12 1.1E-16 89.2 7.0 59 1-67 48-109 (130)
152 2dgt_A RNA-binding protein 30; 99.3 1.9E-12 6.6E-17 84.2 5.4 56 1-67 30-85 (92)
153 2i2y_A Fusion protein consists 99.3 1.1E-12 3.8E-17 92.6 4.6 57 1-65 93-149 (150)
154 1x4c_A Splicing factor, argini 99.3 1.9E-12 6.5E-17 86.8 5.5 58 1-68 35-97 (108)
155 2jvo_A Nucleolar protein 3; nu 99.3 2.2E-12 7.4E-17 86.9 5.6 56 1-67 51-106 (108)
156 4f02_A Polyadenylate-binding p 99.3 3.6E-12 1.2E-16 94.8 7.3 65 1-68 35-99 (213)
157 2d9o_A DNAJ (HSP40) homolog, s 99.3 2E-12 6.8E-17 86.5 4.7 57 1-67 37-93 (100)
158 2dnp_A RNA-binding protein 14; 99.3 1.9E-12 6.4E-17 83.9 4.4 55 1-66 29-83 (90)
159 1fxl_A Paraneoplastic encephal 99.3 3.5E-12 1.2E-16 89.9 6.2 58 1-61 108-167 (167)
160 1fjc_A Nucleolin RBD2, protein 99.3 1.4E-12 4.7E-17 85.3 3.6 58 1-66 36-93 (96)
161 2cq2_A Hypothetical protein LO 99.3 1.3E-12 4.5E-17 89.4 3.6 57 1-66 47-108 (114)
162 3smz_A Protein raver-1, ribonu 99.3 6.8E-12 2.3E-16 96.4 7.2 64 1-68 205-268 (284)
163 2e5i_A Heterogeneous nuclear r 99.3 6.8E-12 2.3E-16 87.0 6.5 58 1-67 45-105 (124)
164 2cqh_A IGF-II mRNA-binding pro 99.3 1.4E-12 4.9E-17 84.8 2.6 57 1-67 28-86 (93)
165 2cpd_A Apobec-1 stimulating pr 99.3 5.5E-12 1.9E-16 83.0 5.3 55 1-66 35-91 (99)
166 3tyt_A Heterogeneous nuclear r 99.3 6.6E-12 2.2E-16 93.5 6.4 57 1-65 25-81 (205)
167 3u1l_A PRE-mRNA-splicing facto 99.3 4.5E-12 1.5E-16 97.0 5.5 59 1-68 163-233 (240)
168 2ghp_A U4/U6 snRNA-associated 99.3 4.3E-12 1.5E-16 97.9 5.4 61 1-65 231-292 (292)
169 2diu_A KIAA0430 protein; struc 99.3 3.3E-12 1.1E-16 84.5 4.1 55 1-68 33-88 (96)
170 2qfj_A FBP-interacting repress 99.3 7.4E-12 2.5E-16 92.1 6.3 64 1-67 48-111 (216)
171 1wf1_A RNA-binding protein RAL 99.3 2.6E-12 9.1E-17 86.2 3.5 55 1-66 48-102 (110)
172 2e5g_A U6 snRNA-specific termi 99.3 4.5E-12 1.5E-16 82.8 4.3 58 1-67 28-85 (94)
173 1l3k_A Heterogeneous nuclear r 99.2 1E-11 3.4E-16 90.0 6.5 63 1-67 33-95 (196)
174 3pgw_A U1-A; protein-RNA compl 99.2 1.1E-11 3.9E-16 95.1 6.8 60 1-66 33-92 (282)
175 3nmr_A Cugbp ELAV-like family 99.2 1.1E-11 3.6E-16 88.1 6.2 58 1-62 115-175 (175)
176 2hgn_A Heterogeneous nuclear r 99.2 1.5E-12 5E-17 91.9 1.6 61 1-67 66-126 (139)
177 3md3_A Nuclear and cytoplasmic 99.2 2E-11 7E-16 85.8 7.1 62 1-66 20-81 (166)
178 1fje_B Nucleolin RBD12, protei 99.2 1.9E-11 6.4E-16 87.4 6.3 57 1-65 119-175 (175)
179 1wg1_A KIAA1579 protein, homol 99.2 2.2E-11 7.4E-16 78.6 5.2 55 1-65 25-79 (88)
180 2e44_A Insulin-like growth fac 99.2 1.3E-11 4.5E-16 80.6 4.0 57 1-64 35-92 (96)
181 2dha_A FLJ20171 protein; RRM d 99.2 3.3E-12 1.1E-16 88.3 1.1 63 1-68 43-109 (123)
182 3smz_A Protein raver-1, ribonu 99.2 3.8E-11 1.3E-15 92.2 7.1 63 1-66 115-177 (284)
183 3beg_B Splicing factor, argini 99.2 2.6E-11 8.8E-16 82.3 5.1 54 1-64 36-94 (115)
184 2hgm_A HNRPF protein, heteroge 99.1 1.4E-11 4.8E-16 85.5 3.0 58 1-64 62-121 (126)
185 2voo_A Lupus LA protein; RNA-b 99.1 6E-11 2.1E-15 87.6 6.6 59 1-64 129-187 (193)
186 2dnl_A Cytoplasmic polyadenyla 99.1 5.6E-11 1.9E-15 80.4 5.7 58 1-64 28-88 (114)
187 3d2w_A TAR DNA-binding protein 99.1 7.3E-11 2.5E-15 76.7 5.3 54 1-66 31-86 (89)
188 2cjk_A Nuclear polyadenylated 99.1 4.3E-11 1.5E-15 84.6 4.5 62 1-67 23-84 (167)
189 3dxb_A Thioredoxin N-terminall 99.1 1.4E-10 4.9E-15 86.5 7.5 64 2-65 150-214 (222)
190 3nmr_A Cugbp ELAV-like family 99.1 9.4E-11 3.2E-15 83.2 5.3 63 1-66 23-90 (175)
191 2dnr_A Synaptojanin-1; RRM dom 99.1 1.6E-10 5.6E-15 75.6 5.0 54 2-67 36-89 (91)
192 3pgw_A U1-A; protein-RNA compl 99.0 2.4E-10 8.1E-15 87.7 6.0 54 1-62 227-281 (282)
193 3sde_A Paraspeckle component 1 99.0 2.8E-10 9.7E-15 86.9 5.6 63 1-67 116-182 (261)
194 2hzc_A Splicing factor U2AF 65 99.0 1.7E-10 5.9E-15 73.7 3.6 44 7-60 43-86 (87)
195 2adc_A Polypyrimidine tract-bi 99.0 4E-10 1.4E-14 84.5 5.6 56 1-64 171-228 (229)
196 2ghp_A U4/U6 snRNA-associated 99.0 2.3E-10 7.9E-15 88.1 4.3 64 1-68 137-201 (292)
197 2adc_A Polypyrimidine tract-bi 99.0 2.3E-10 8E-15 85.8 4.1 56 1-64 55-110 (229)
198 1qm9_A Polypyrimidine tract-bi 99.0 2.1E-10 7.3E-15 83.5 3.1 56 1-64 140-197 (198)
199 1qm9_A Polypyrimidine tract-bi 99.0 2.1E-10 7.3E-15 83.5 2.9 57 1-65 24-80 (198)
200 3sde_A Paraspeckle component 1 99.0 8.3E-10 2.8E-14 84.3 5.9 55 1-64 42-96 (261)
201 1wf0_A TDP-43, TAR DNA-binding 98.9 2.2E-10 7.5E-15 73.7 1.6 56 1-68 25-82 (88)
202 3tyt_A Heterogeneous nuclear r 98.9 5.3E-10 1.8E-14 83.1 3.6 56 1-61 143-204 (205)
203 1fje_B Nucleolin RBD12, protei 98.9 7.7E-11 2.6E-15 84.1 -1.7 60 2-66 34-93 (175)
204 3tht_A Alkylated DNA repair pr 98.8 3.4E-09 1.2E-13 84.8 5.4 55 1-64 40-99 (345)
205 2g4b_A Splicing factor U2AF 65 98.7 8.3E-09 2.8E-13 73.0 4.0 49 7-65 41-89 (172)
206 2yh0_A Splicing factor U2AF 65 98.7 9E-09 3.1E-13 74.4 3.1 43 23-66 48-90 (198)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 9.4E-09 3.2E-13 67.7 2.8 49 2-62 45-93 (95)
208 1owx_A Lupus LA protein, SS-B, 98.1 5.2E-06 1.8E-10 57.0 4.9 58 1-67 39-99 (121)
209 2kn4_A Immunoglobulin G-bindin 96.8 0.0012 4E-08 46.0 4.3 36 10-50 2-37 (158)
210 2l9w_A U4/U6 snRNA-associated- 96.6 0.0055 1.9E-07 41.2 6.1 46 6-60 51-96 (117)
211 2i2y_A Fusion protein consists 96.6 0.00081 2.8E-08 46.6 1.8 44 22-66 9-53 (150)
212 1wey_A Calcipressin 1; structu 96.4 0.0033 1.1E-07 41.8 3.7 56 1-65 30-85 (104)
213 1wwh_A Nucleoporin 35, nucleop 96.2 0.011 3.6E-07 40.2 5.7 54 2-65 44-98 (119)
214 3p3d_A Nucleoporin 53; structu 94.9 0.02 6.8E-07 39.5 3.2 38 26-64 62-99 (132)
215 2dhx_A Poly (ADP-ribose) polym 87.9 4.1 0.00014 26.7 7.8 46 6-63 38-83 (104)
216 3ctr_A Poly(A)-specific ribonu 81.7 0.95 3.2E-05 29.6 2.5 36 1-47 25-60 (101)
217 1whv_A Poly(A)-specific ribonu 81.3 1.2 4E-05 29.1 2.9 36 1-47 35-70 (100)
218 2g0c_A ATP-dependent RNA helic 65.4 4.2 0.00014 24.3 2.4 35 27-62 41-75 (76)
219 3pq1_A Poly(A) RNA polymerase; 58.2 2.6 8.8E-05 34.7 0.5 34 2-43 73-106 (464)
220 1uw4_A UPF3X; nonsense mediate 56.4 18 0.00063 22.8 4.3 37 26-62 45-86 (91)
221 3lpe_A Putative transcription 45.0 15 0.0005 23.1 2.5 25 25-49 49-73 (92)
222 2l08_A Regulator of nonsense t 43.9 31 0.0011 22.1 3.9 36 27-62 54-94 (97)
223 2e5p_A Protein PHF1, PHD finge 32.0 25 0.00086 21.0 1.8 11 25-35 36-46 (68)
224 2m0o_A PHD finger protein 1; t 30.4 32 0.0011 21.1 2.2 11 25-35 53-63 (79)
225 3p8b_B Transcription antitermi 29.0 34 0.0012 23.2 2.4 26 25-50 42-67 (152)
226 3d45_A Poly(A)-specific ribonu 27.7 47 0.0016 27.3 3.4 36 1-47 459-494 (507)
227 2k5n_A Putative cold-shock pro 25.5 27 0.00094 21.0 1.2 11 25-35 13-23 (74)
228 3ts2_A Protein LIN-28 homolog 25.4 23 0.0008 24.2 1.0 10 25-34 20-29 (148)
229 3h7h_B Transcription elongatio 25.4 65 0.0022 20.8 3.1 24 25-48 50-73 (106)
230 2eqj_A Metal-response element- 24.1 42 0.0014 20.0 1.8 11 25-35 40-50 (66)
231 3cam_A Cold-shock domain famil 24.1 30 0.001 20.2 1.2 11 25-35 12-22 (67)
232 2kcm_A Cold shock domain famil 24.1 30 0.001 20.8 1.2 11 25-35 11-21 (74)
233 1c9o_A CSPB, cold-shock protei 23.8 31 0.0011 20.0 1.2 11 25-35 12-22 (66)
234 2e5q_A PHD finger protein 19; 23.5 18 0.0006 21.4 0.1 11 25-35 34-44 (63)
235 3a0j_A Cold shock protein; OB- 23.0 33 0.0011 20.5 1.2 11 25-35 12-22 (73)
236 3ulj_A LIN28B, DNA-binding pro 22.6 33 0.0011 21.5 1.2 9 25-33 19-27 (90)
237 1h95_A CSD, Y-box binding prot 22.5 34 0.0012 20.8 1.2 11 25-35 19-29 (79)
238 1g6p_A Cold shock protein TMCS 22.0 35 0.0012 19.8 1.2 11 25-35 11-21 (66)
239 3i2z_B RNA chaperone, negative 20.5 39 0.0013 19.9 1.2 11 25-35 16-26 (71)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=108.30 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=57.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE 63 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~ 63 (145)
+|++||.|.+++++. |+.+|+++|||||+|.+.++|.+|++.|||..|.|++|.|+||+|
T Consensus 39 ~F~~~G~I~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 39 LFSSIGEVESAKLIR---DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHhcCCEEEeEeee---cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 589999999999986 788999999999999999999999999999999999999999976
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=107.33 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=59.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. |+.||+++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.......
T Consensus 26 ~F~~~G~i~~v~i~~---d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~~~ 90 (110)
T 3s8s_A 26 MCRKYGEVEEVEILL---HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRM 90 (110)
T ss_dssp HHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHHHH
T ss_pred HHHhcCCeeEEEEEE---CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcHHH
Confidence 489999999999996 78899999999999999999999999999999999999999997765443
No 3
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=2.2e-16 Score=105.09 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=58.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCC-eeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG-RPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~g-r~l~V~~a~~~~~ 66 (145)
+|++||.|.+++|+. |+.||+++|||||+|.+.++|.+||+.|||..|.| +.|.|.++.+...
T Consensus 32 ~F~~~G~i~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 32 LFSKAGKVVNMEFPI---DEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVER 95 (100)
T ss_dssp HHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHHH
T ss_pred HHHhcCCEeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhhh
Confidence 489999999999986 68889999999999999999999999999999999 9999999987643
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=98.12 Aligned_cols=62 Identities=26% Similarity=0.485 Sum_probs=55.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.++. ++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|+|+.+++
T Consensus 26 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 26 AFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp HHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred HHHhcCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 489999999999986 67789999999999999999999999999999999999999998763
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2e-15 Score=96.32 Aligned_cols=62 Identities=26% Similarity=0.599 Sum_probs=57.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++.
T Consensus 21 ~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 21 AFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp HHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHhcCCeeEEEEEE---cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 489999999999986 67899999999999999999999999999999999999999998864
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=98.76 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=59.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. ++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.++....
T Consensus 35 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 35 LFRPFGSISRIYLAK---DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNSG 99 (103)
T ss_dssp TSTTTCCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCSC
T ss_pred HHHhCCCeEEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCCC
Confidence 699999999999986 67789999999999999999999999999999999999999998875443
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=3.1e-15 Score=101.27 Aligned_cols=65 Identities=25% Similarity=0.448 Sum_probs=59.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. ++.+|.++|||||+|.+.++|..||+.|||..|.|+.|.|.|+.++....
T Consensus 35 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 35 AFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp HHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCS
T ss_pred HHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCC
Confidence 489999999999986 67799999999999999999999999999999999999999999876554
No 8
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=4.3e-16 Score=101.56 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=54.2
Q ss_pred CCCCCc--ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYG--KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G--~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++|| .|.+++++. |+.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.+.....
T Consensus 21 ~F~~~G~~~v~~v~i~~---~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~~ 87 (90)
T 3p5t_L 21 AVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHHH 87 (90)
T ss_dssp HHHTTTCCCCCCEEEEE---CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-------
T ss_pred HHHHhCCCceEEEEEEe---cCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcccc
Confidence 488999 999999986 78899999999999999999999999999999999999999998875443
No 9
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7e-15 Score=99.41 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=55.8
Q ss_pred CCCCCcceeEEEEeeccCCCCC---CCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKR---GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~t---g~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.|+. ++.+ ++++|||||+|.+.++|.+||..|||..|.|+.|.|.||.+++
T Consensus 38 ~F~~~G~i~~v~i~~---~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 38 YFGKFGKIHKVVINN---STSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTTTTSCEEEEEEEC---CSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred HhhccCCEEEEEEec---CCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 699999999999985 4544 4567999999999999999999999999999999999999875
No 10
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=3.6e-15 Score=98.01 Aligned_cols=65 Identities=23% Similarity=0.435 Sum_probs=60.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++++. |+.+|+++|||||+|.+.++|..|++.|||..|.|+.|.|.++.++....
T Consensus 22 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 86 (96)
T 2x1f_A 22 LCSNVGPVINLKMMF---DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISG 86 (96)
T ss_dssp HHHTTSCEEEEECCB---CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGGG
T ss_pred HHHhcCCEEEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCCC
Confidence 489999999999985 77889999999999999999999999999999999999999999986654
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=97.27 Aligned_cols=65 Identities=31% Similarity=0.540 Sum_probs=59.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. |+.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|+++.++....
T Consensus 25 ~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 25 IFEPFGKIDNIVLMK---DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 89 (95)
T ss_dssp HHTTTSCEEEEEEEC---CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCC
T ss_pred HHHhcCCEeEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCC
Confidence 489999999999985 67789999999999999999999999999999999999999998875443
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=101.00 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=54.2
Q ss_pred CCCCCcc--eeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCC----eeCCeeeEEEEccc
Q 032211 1 MFSPYGK--IVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGR----LACGRPLVVRLASE 63 (145)
Q Consensus 1 lFs~~G~--I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~----~i~gr~l~V~~a~~ 63 (145)
+|++||. |.+|+++. |+.||++||||||+|.+.++|.+||+.|||. .|+||+|.|+||+.
T Consensus 29 ~F~~~G~i~v~~v~i~~---d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 29 ALSPYASLAVNNIRLIK---DKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HSTTTCCCCGGGEECCC---CSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHhhCCccEEEEEEEe---cCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 4999995 66888874 8899999999999999999999999999997 48999999999875
No 13
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=100.14 Aligned_cols=62 Identities=27% Similarity=0.482 Sum_probs=58.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+++
T Consensus 43 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 43 KFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHhccCCeEEEEEEe---cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 489999999999986 77889999999999999999999999999999999999999998765
No 14
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=98.88 Aligned_cols=65 Identities=28% Similarity=0.407 Sum_probs=59.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. |+.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++....
T Consensus 28 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 28 LFSAYGPLSELHYPI---DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp HHHTTSCEEEEECCC---CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred HHHhcCCEeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence 489999999999985 67789999999999999999999999999999999999999999876543
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-16 Score=102.75 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=56.7
Q ss_pred CCCCCc-ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHh-cCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYG-KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKM-HGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G-~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~l-ng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++|| .|.+|+|+. |+.+|.+||||||+|.+.++|.+||+.+ |+..|.|++|.|+||.+++..
T Consensus 21 ~F~~~G~~v~~v~i~~---d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 21 QLQSHGVQAREVRLMR---NKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp HHHHHTCCCSBCCSSS---CSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred HHHHhCCEeEEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 488999 899999884 7889999999999999999999999887 566799999999999887543
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.4e-15 Score=97.58 Aligned_cols=64 Identities=22% Similarity=0.444 Sum_probs=58.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|..||. ||+..|.|+.|.|.++.++....
T Consensus 30 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 30 YFKKFGVVTEVVMIY---DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp HHSSSSCEEEEEECC---CTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred HHHhcCCeEEEEEEe---CCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence 489999999999985 77889999999999999999999998 99999999999999999875443
No 17
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=4.5e-15 Score=99.75 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=58.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.++..
T Consensus 46 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 46 KFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp HHGGGSCEEEEECCB---CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred HHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 489999999999985 678899999999999999999999999999999999999999988653
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.5e-15 Score=95.57 Aligned_cols=59 Identities=25% Similarity=0.447 Sum_probs=55.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|+||+
T Consensus 36 ~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 36 IFSKYGKVVKVTIMK---DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HTTTTSCEEEEEECC---CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 599999999999985 67789999999999999999999999999999999999999984
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=97.05 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=57.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. ++ +|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++..
T Consensus 37 ~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 37 ICKAHGTVKDLRLVT---NR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp HHTTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred HHHhCCCeEEEEEEE---CC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 489999999999986 55 899999999999999999999999999999999999999988653
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.6e-15 Score=99.55 Aligned_cols=65 Identities=29% Similarity=0.480 Sum_probs=59.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.....
T Consensus 32 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 32 AFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp HHTTTSCCCCEECCC---CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred HhhccCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 489999999999885 77889999999999999999999999999999999999999998876544
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=100.39 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=58.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+ +|+++|||||+|.+.++|..|+..|||..|.|+.|.|+++.+.....
T Consensus 27 ~F~~~G~i~~v~i~~---~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 27 VFGKHGPISEVLLIK---DR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQS 90 (116)
T ss_dssp HHHTSSCCSEEEEEC---ST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSS
T ss_pred HHHhcCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCC
Confidence 489999999999985 55 89999999999999999999999999999999999999998876544
No 22
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=4.7e-15 Score=100.05 Aligned_cols=62 Identities=34% Similarity=0.633 Sum_probs=57.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|..|++.|||..|.|+.|.|+++.++.
T Consensus 46 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 46 IFEPFGRIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHTTTSCEEEEEEEE---ETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred HHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 489999999999986 67789999999999999999999999999999999999999998864
No 23
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=4.5e-15 Score=95.08 Aligned_cols=59 Identities=32% Similarity=0.512 Sum_probs=55.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.++.++. |+.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|+||+
T Consensus 27 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 27 AFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHGGGSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhccCCEEEEEEEE---CCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 489999999999885 67789999999999999999999999999999999999999984
No 24
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=97.43 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=57.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. ++ +|+++|||||+|.+.++|..||..|||+.|.|+.|.|+++.......
T Consensus 35 ~f~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 98 (114)
T 2do0_A 35 VFSMAGVVVRADILE---DK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 98 (114)
T ss_dssp HHTTTSCEEEEEEEE---CT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCCCS
T ss_pred HHHhcCCeEEEEEEE---CC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCCC
Confidence 589999999999986 45 58999999999999999999999999999999999999988754433
No 25
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.55 E-value=4.7e-15 Score=100.52 Aligned_cols=65 Identities=26% Similarity=0.436 Sum_probs=59.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. |+.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|+|+.++....
T Consensus 45 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 45 MFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp HHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred HHHhcCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence 489999999999986 67789999999999999999999999999999999999999998875443
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.5e-15 Score=95.89 Aligned_cols=60 Identities=33% Similarity=0.534 Sum_probs=56.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE 63 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~ 63 (145)
+|++||.|.++.++. |+.+|+++|||||+|.+.++|.+|+..|||..|.|+.|.|+|+.+
T Consensus 35 ~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 35 VFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHhcCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 489999999999986 678899999999999999999999999999999999999999875
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.1e-15 Score=98.06 Aligned_cols=65 Identities=31% Similarity=0.631 Sum_probs=59.1
Q ss_pred CCCCCcceeEE-EEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSE-DFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~-~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++ +|+. |+.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++....
T Consensus 25 ~F~~~G~i~~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 25 TFSAFGVILQTPKIMR---DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp HHHTTSCBSSCCEECC---CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCC
T ss_pred HHHhcCCeeEEEEEEE---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCC
Confidence 48999999999 8874 77899999999999999999999999999999999999999998876443
No 28
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=95.78 Aligned_cols=63 Identities=38% Similarity=0.647 Sum_probs=58.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. + +|.++|||||+|.+.++|..||..|||..|.|+.|.|.|+.++....
T Consensus 35 ~F~~~G~i~~v~i~~---~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 35 AFSPFGTITSAKVMM---E--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp TTTTTSCEEEEEEEE---C--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCC
T ss_pred HHHhcCCEEEEEEEc---C--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCC
Confidence 699999999999986 4 88899999999999999999999999999999999999999876544
No 29
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.9e-15 Score=98.31 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=58.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++. |+.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+....
T Consensus 35 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 35 LFLQAGPVVNTHMPK---DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp HHHTTSCEEEEECCB---CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred HHHhcCCeEEEEEEe---cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 489999999999985 6778999999999999999999999999999999999999999887543
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.1e-15 Score=98.86 Aligned_cols=65 Identities=29% Similarity=0.477 Sum_probs=59.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.+.....
T Consensus 33 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 33 VFEKYGRVGDVYIPR---EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDL 97 (103)
T ss_dssp HHTTTSCEEEEECCB---CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSCC
T ss_pred HHHhcCCEEEEEEEe---CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCCC
Confidence 489999999999985 67889999999999999999999999999999999999999998765433
No 31
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=1.9e-14 Score=97.02 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=56.6
Q ss_pred CCCCCcceeEEEEeeccCCCC-CCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPK-RGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~-tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.|+. ++. +++++||+||+|.+.++|.+|+..|||..|.||.|.|.++.+....
T Consensus 33 ~f~~~G~V~~v~i~~---~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 33 ECEKYGKVGKCVIFE---IPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFR 97 (105)
T ss_dssp HGGGGSCEEEEEEEE---CSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHH
T ss_pred HHHhcCCEEEEEEec---CCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhh
Confidence 389999999999986 444 3689999999999999999999999999999999999999875433
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.53 E-value=9.9e-15 Score=99.32 Aligned_cols=63 Identities=29% Similarity=0.468 Sum_probs=55.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. |+ +.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.++....
T Consensus 25 ~F~~~G~v~~v~i~~---d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~ 87 (115)
T 4f25_A 25 TFSAFGNILSCKVVC---DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 87 (115)
T ss_dssp HHGGGSCEEEEEEEE---ET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--
T ss_pred HHhccCCEEEEEEee---cC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc
Confidence 589999999999996 33 4589999999999999999999999999999999999998765443
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=7e-15 Score=96.79 Aligned_cols=68 Identities=26% Similarity=0.362 Sum_probs=58.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+.++.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|+++.+.....
T Consensus 25 ~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 25 VFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp HHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 48999999999998742222366899999999999999999999999999999999999998865443
No 34
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.4e-15 Score=98.65 Aligned_cols=65 Identities=32% Similarity=0.548 Sum_probs=60.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. ++.+|.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.+.....
T Consensus 28 ~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 28 IFSEVGPVVSFRLVY---DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 92 (104)
T ss_dssp HHHTTSCCSEEEEEE---ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHH
T ss_pred HHHhcCCeeEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchh
Confidence 489999999999986 57789999999999999999999999999999999999999999887665
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=96.02 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=55.2
Q ss_pred CCCCCcceeE--------EEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVS--------EDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~--------~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.+ ++++. |+.+|+++|||||+|.+.++|..|++.|||..|.|+.|.|++|+
T Consensus 33 ~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 33 YFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHTTTSCBCEETTTTEESEEEEE---CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHhCCEeeccccccccEEEEe---cCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 4899999999 98886 67899999999999999999999999999999999999999974
No 36
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=8.9e-15 Score=101.79 Aligned_cols=62 Identities=32% Similarity=0.539 Sum_probs=58.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.+++|+. |+.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|+|+.++.
T Consensus 66 ~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 66 VFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHTTTSCEEEEEEEC---CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred HHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 489999999999985 77889999999999999999999999999999999999999998864
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=97.02 Aligned_cols=65 Identities=29% Similarity=0.507 Sum_probs=58.9
Q ss_pred CCCCCcceeEEEEeeccCC-CCCCCCccEEEEEEccHHHHHHHHHHh-cCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRG-PKRGVPRGFAFIEYSTKEEAKLAKEKM-HGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd-~~tg~skG~~FV~f~~~e~A~~Ai~~l-ng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. + +.+|.++|||||+|.+.++|..||..| |+..|.|+.|.|.|+.++....
T Consensus 35 ~F~~~G~i~~v~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 35 LFSTFGELKTVRLPK---KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp HHHTTSCEEEEECCC---CCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred HHHccCCeEEEEEec---CCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 489999999999985 6 678999999999999999999999999 9999999999999999875544
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=1.6e-14 Score=96.16 Aligned_cols=64 Identities=33% Similarity=0.586 Sum_probs=58.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCC---eeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG---RPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~g---r~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+ +|+++|||||+|.+.++|..||..|||..|.| +.|.|.++.++....
T Consensus 35 ~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 35 LFQPFGVIDECTVLR---GP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp HHTTTSCEEEEEEEE---CS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred HHHhcCCeEEEEEEE---CC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 589999999999986 55 78999999999999999999999999999998 999999999876543
No 39
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=5.5e-15 Score=102.92 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=56.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+|.+. .+|+++|||||+|.+.++|..|+..|||..|.|++|.|.||.++....
T Consensus 53 ~F~~~G~I~~v~i~------~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 53 LASSQGDILDIVVD------LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQV 114 (127)
T ss_dssp HHHHHSCEEEEEEC------CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHH
T ss_pred HhccCCCeEEEEec------cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhc
Confidence 48999999998774 368899999999999999999999999999999999999999876655
No 40
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=8.7e-15 Score=105.08 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=59.5
Q ss_pred CCCCCc--ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYG--KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G--~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++|| .|.+++|+. |+.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.++.+.....
T Consensus 75 ~F~~~G~i~v~~v~i~~---d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~~~~ 141 (156)
T 3n9u_C 75 VIRSIGVYDVVELKFAE---NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQ 141 (156)
T ss_dssp HHHHTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHHHHH
T ss_pred HHHHHCCccEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCcchh
Confidence 488999 999999986 78899999999999999999999999999999999999999998765443
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-15 Score=98.34 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=59.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. ++.++.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.+.....
T Consensus 32 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 32 VFSKYGQISEVVVVK---DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 96 (102)
T ss_dssp HHHHHSCCCEEEECC---CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCC
T ss_pred HHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 488999999999985 67789999999999999999999999999999999999999998875443
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.4e-14 Score=98.46 Aligned_cols=59 Identities=22% Similarity=0.496 Sum_probs=54.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.+++|+. |+.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|+|++
T Consensus 60 ~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 60 TFLPFGNVISAKVFI---DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HTTTSCEEEEEEECC---CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHhcCCEEEEEEEe---CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 599999999999985 67789999999999999999999999999999999999999974
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=97.52 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=59.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc------CCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH------GRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln------g~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|.++|||||+|.+.++|..||..|| +..|.|+.|.|.++.++....
T Consensus 35 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 35 VLQQFGDLKYVRVVL---HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp HHHTTSCEEEEECCB---CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred HHHhcCCeEEEEEEe---cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 489999999999985 78899999999999999999999999999 999999999999998875443
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.52 E-value=1.7e-14 Score=93.06 Aligned_cols=60 Identities=28% Similarity=0.443 Sum_probs=56.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.++.++. |+.+|+++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+.
T Consensus 26 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 26 HFHGCGSVNRVTILC---DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HHGGGCCEEEEEEEE---SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred HHHhCCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 489999999999986 6778999999999999999999999 99999999999999998774
No 45
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=1e-14 Score=100.25 Aligned_cols=65 Identities=26% Similarity=0.448 Sum_probs=59.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|+.++....
T Consensus 42 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 42 KFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPK 106 (126)
T ss_dssp HHHTTSCEEEEECCB---CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSCC
T ss_pred HHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCCC
Confidence 489999999999985 67799999999999999999999999999999999999999998875544
No 46
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=2e-14 Score=103.45 Aligned_cols=65 Identities=28% Similarity=0.447 Sum_probs=58.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|..|.|+. ++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|+.++....
T Consensus 92 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 92 KFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HhhcCCCEEEEEEEe---cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 489999999999986 67899999999999999999999999999999999999999998876655
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=3.2e-14 Score=94.57 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=57.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++|| |.+++|+. |+.+|+++|||||+|.+.++|..|| .|||..|.|+.|.|.++.++....
T Consensus 35 ~F~~~g-i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dng_A 35 IFKDLS-IRSVRLVR---DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQDK 97 (103)
T ss_dssp HTTTSC-EEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCCC
T ss_pred HHHhCC-ceEEEEee---cCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCCC
Confidence 589997 99999986 6788999999999999999999999 999999999999999998865443
No 48
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.5e-15 Score=99.08 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=58.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|.+|| .|||+.|.|+.|.|.++.++....
T Consensus 45 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 108 (114)
T 2cq4_A 45 FFSAVGKVRDVRIIS---DRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRL 108 (114)
T ss_dssp HHTTTSCEEEEEECC---SCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHHHHH
T ss_pred HHHhCCCEeEEEEEe---cCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCccCC
Confidence 589999999999985 7888999999999999999999999 999999999999999998875544
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=97.64 Aligned_cols=65 Identities=28% Similarity=0.327 Sum_probs=58.8
Q ss_pred CCCCCccee--------EEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIV--------SEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~--------~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|. .++|+. |+.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.++....
T Consensus 35 ~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 35 FFKQCGVVKMNKRTGQPMIHIYL---DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp HHTTTSCBCBCSSSCCBSEECCB---CTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCST
T ss_pred HHHhcCCEeEccccCccCEEEEE---eCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCCC
Confidence 589999998 588875 77899999999999999999999999999999999999999998876543
No 50
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=96.52 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. ++.+++++|||||+|.+.++|.+||..+|+ .|.|+.|.|+++.+.....
T Consensus 37 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 37 YFEGFGDIEEAVVIT---DRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAKPR 100 (116)
T ss_dssp HHHTTSCEEEEEESC---CSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCCCC
T ss_pred HHHhCCCeeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCCcc
Confidence 489999999999985 778899999999999999999999999998 8999999999998764433
No 51
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=3e-14 Score=95.13 Aligned_cols=58 Identities=22% Similarity=0.429 Sum_probs=54.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.++.|+. ++ +|+++|||||+|.+.++|..|+..|||..|.|+.|.|+++.
T Consensus 49 ~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 49 LFAEFGTLKKAAVHY---DR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHhcCCeEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 488999999999986 56 89999999999999999999999999999999999999985
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=93.77 Aligned_cols=62 Identities=26% Similarity=0.444 Sum_probs=55.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCC-CccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGV-PRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~-skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.++. ++.++. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+..
T Consensus 24 ~F~~~G~i~~~~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 24 IFSTYGKIKMIDMPV---ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp HHHTTSCEEEEECCE---ETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred HHHhCCCEEEEEEEe---CCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 489999999999986 455555 89999999999999999999999999999999999997754
No 53
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=94.73 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCCCCcceeEEEEeeccCCCCC-CCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKR-GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~t-g~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++|| |.++.|+. |+.+ |+++|||||+|.+.++|.+|| .||+..|.|+.|.|+++.++....
T Consensus 35 ~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 35 FFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKD 98 (104)
T ss_dssp HTTTSC-EEEEECCB---CSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCCC
T ss_pred HHHHCC-ceEEEEec---CCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCCC
Confidence 599999 99999985 6776 999999999999999999999 999999999999999998875543
No 54
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.50 E-value=1.1e-14 Score=97.18 Aligned_cols=64 Identities=28% Similarity=0.466 Sum_probs=58.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCee---CCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA---CGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i---~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+++|+. |+.+|+++|||||+|.+.++|..|+..|||..+ .|+.|.|.++.++...
T Consensus 33 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 33 LFEEFGKIYELTVLK---DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp HHHHHSCCCEEECCC---CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred HHHhcCCeeEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 488999999999985 778899999999999999999999999999998 8999999999886543
No 55
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=6.7e-15 Score=95.44 Aligned_cols=64 Identities=25% Similarity=0.451 Sum_probs=53.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. |+.+|+++|||||+|.+.+ |..|+..|||..|.|+.|.|++|.+.....
T Consensus 21 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~~ 84 (90)
T 2ki2_A 21 LFSQFGKVFNVKLIY---DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSLE 84 (90)
T ss_dssp THHHHTCCSEEEECC---CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-------
T ss_pred HHHhcCCEEEEEEEE---cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCCC
Confidence 588999999999985 7788999999999999999 999999999999999999999998875544
No 56
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=95.50 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=57.8
Q ss_pred CCCCCccee-EEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCee----eEEEEccccch
Q 032211 1 MFSPYGKIV-SEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRP----LVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~-~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~----l~V~~a~~~~~ 66 (145)
+|++||.|. +++|+. |+.+|+++|||||+|.+.++|..|+..|||..|.|+. |.|.||.+...
T Consensus 29 ~F~~~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 29 AFATMGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp HHHHTTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred HHHHhCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 488999999 999986 7789999999999999999999999999999999999 99999987643
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=92.94 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=54.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE 63 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~ 63 (145)
+|++||.|.++.|+. |+. |+++|||||+|.+.++|.+|+..|||..|.|+.|.|+++..
T Consensus 36 ~F~~~G~i~~v~i~~---~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 36 LFLQAGPLTKVTICK---DRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HHGGGSCEEEEEEEE---CTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHhcCCEEEEEEEE---CCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 489999999999986 554 88999999999999999999999999999999999999864
No 58
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.49 E-value=1.5e-14 Score=94.68 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=49.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
||.+||+|.++.++. +||||||+|.+.++|..|++.||+..++|++|.|++|.
T Consensus 27 lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 27 LCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 588999999999873 69999999999999999999999999999999999994
No 59
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=94.95 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=55.1
Q ss_pred CCCCCcceeEEEEeeccCCC-CCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGP-KRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~-~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++|| |.+++|+. ++ .+|+++|||||+|.+.++|.+|| .|||..|.|+.|.|+++.++.
T Consensus 39 ~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 39 FFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp HSCSSC-EEEEECSC---CTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred HHHhcC-CeEEEEEe---cCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 599999 99999985 56 58999999999999999999999 999999999999999998764
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-14 Score=95.00 Aligned_cols=61 Identities=25% Similarity=0.347 Sum_probs=56.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|+++...
T Consensus 35 ~F~~~G~v~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 35 FFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp HTTTSCCCTTTCEEE---ECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred HHHHcCCccceEEEE---ECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 599999998887775 5778999999999999999999999999999999999999998764
No 61
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=4.1e-14 Score=100.72 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=59.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+|.|+. ++.++.++|||||+|.+.++|..||..||+..|.|+.|.|+|+.+.....
T Consensus 59 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 123 (156)
T 1h2v_Z 59 LFSKSGDIKKIIMGL---DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGR 123 (156)
T ss_dssp HHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTTC
T ss_pred HHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCcC
Confidence 589999999999986 67889999999999999999999999999999999999999998865543
No 62
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.3e-14 Score=93.81 Aligned_cols=60 Identities=22% Similarity=0.544 Sum_probs=55.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCee--------CCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA--------CGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i--------~gr~l~V~~a~~~ 64 (145)
+|++||.|.+++|+. |+ +|.++|||||+|.+.++|..|+..|||..| .+++|.|.|+.+.
T Consensus 45 ~F~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 45 MLKPFGQVISTRILR---DS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TTTTTSCEEEEEEEE---CS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred HHHhcCCEEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 699999999999986 56 899999999999999999999999999999 5788999999865
No 63
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-14 Score=101.13 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=59.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. |+.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.++.+.....
T Consensus 62 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 62 LFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRP 126 (139)
T ss_dssp HHHHHSCEEEEEEEE---ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred HHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 488999999999986 67789999999999999999999999999999999999999998875443
No 64
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.49 E-value=3.6e-14 Score=97.21 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=56.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|..|| .|||..|.|+.|.|.++.+...
T Consensus 56 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 56 HFSSCGSINRITILC---DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp HHHTTSCEEEEEEEE---ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred HHHhcCCEEEEEEEe---cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 489999999999986 6778999999999999999999999 8999999999999999886543
No 65
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.48 E-value=1.7e-14 Score=102.62 Aligned_cols=64 Identities=28% Similarity=0.418 Sum_probs=58.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+++|+. |+.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.+....
T Consensus 90 ~F~~~G~v~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHSCEEEEECCC---CSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHhcCCeEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 488999999999985 7789999999999999999999999999999999999999999886443
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-14 Score=94.25 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=53.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.+++|+. |+.+ +|||||+|.+.++|.+||..|||..|.|+.|.|++|.+...
T Consensus 33 ~F~~~G~v~~v~i~~---~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 33 AFARHGKVKSVELSP---HTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp HHHHHSCEEEEEECS---CCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred hccccCcEEEEEEEe---CCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 488999999999985 4544 89999999999999999999999999999999999987653
No 67
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=96.02 Aligned_cols=64 Identities=20% Similarity=0.386 Sum_probs=57.8
Q ss_pred CCCC-CcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCe-eCCeeeEEEEccccchhh
Q 032211 1 MFSP-YGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRL-ACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~-~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~-i~gr~l~V~~a~~~~~~~ 68 (145)
+|++ ||.|.++.|+. |+ +|+++|||||+|.+.++|..||..|||.. |.|+.|.|.++.++....
T Consensus 29 ~F~~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 29 FFVKVYPSCRGGKVVL---DQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp HHHHHCTTEEEEEEEE---CT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCC
T ss_pred HHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCC
Confidence 4788 99999999986 66 89999999999999999999999999999 999999999998765443
No 68
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-14 Score=92.40 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=54.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.++.++. ++.+|.++|||||+|.+.++|..|+..|||..|.|+.|+|.++.
T Consensus 25 ~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 25 LCQPYGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp TSTTTSCEEEEEEEC---CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHhcCCeEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 699999999999985 67889999999999999999999999999999999999887654
No 69
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=1.3e-14 Score=91.02 Aligned_cols=57 Identities=18% Similarity=0.373 Sum_probs=52.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a 61 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|..|+. +||..|.|+.|.|++|
T Consensus 19 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 19 YFEQFGKVDDAMLMF---DKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHTTSCCSEECCCB---CSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHhcCCEEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 488999999998875 67789999999999999999999996 9999999999999986
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=2.6e-14 Score=93.40 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=54.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE 63 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~ 63 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|+++.+
T Consensus 35 ~F~~~G~i~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 35 FFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HTTTSCBCTTCCEEE---ECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred HHHhcCCccceEEEE---eCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 589999999888875 577899999999999999999999999999999999999998764
No 71
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=5.2e-14 Score=94.59 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=51.0
Q ss_pred CCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEc
Q 032211 3 SPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61 (145)
Q Consensus 3 s~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a 61 (145)
++||.|.++.|+. +. +|+++|||||+|.+.++|.+|+..|||..|.||.|.|.|+
T Consensus 49 ~~~G~V~~v~i~~---~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 49 EKYGEVEEMNVCD---NL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHTCCEEEEEECC---SS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ccCCceEEEEEEe---CC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 8999999999985 44 4789999999999999999999999999999999999986
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-14 Score=100.98 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=56.7
Q ss_pred CCCCCcceeE--EEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCC----eeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVS--EDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGR----LACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~--~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~----~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.. |+|+. |+.+|++||||||+|.+. +|.+|+..|||. .|.|+.|.|+++.+...
T Consensus 43 ~F~~~G~v~~~~v~i~~---d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 43 ALAPYAVLSSSNVRVIK---DKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp HHGGGCCCCTTTEECCB---CSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred HHHHhCCcceeeEEEEE---cCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 4899999976 88885 788999999999999999 999999999999 99999999999988643
No 73
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=95.58 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=58.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|..||.. |+..|.|+.|.|.++.++....
T Consensus 36 ~F~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 36 YFSQYGEVVDCVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp HHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCCT
T ss_pred HHHhcCCeEEEEEee---CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCCC
Confidence 489999999999986 678999999999999999999999988 9999999999999998876444
No 74
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.47 E-value=5.8e-14 Score=96.32 Aligned_cols=64 Identities=19% Similarity=0.351 Sum_probs=58.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+ +|+++|||||+|.+.++|..|+..|||..|.|+.|.|++|.+.....
T Consensus 55 ~F~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 55 LFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLE 118 (124)
T ss_dssp HHHTTSCCSEEEEEC---CS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCCC
T ss_pred HHHhcCCeeEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCCC
Confidence 488999999999985 56 89999999999999999999999999999999999999998865433
No 75
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.47 E-value=6.4e-14 Score=94.49 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.+++|+. |+.+|+++|||||+|.+.++|..||..+ +..|.|+.|.|.++.++..
T Consensus 45 ~F~~~G~i~~v~i~~---~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 45 YFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp HHTTTSCEEEEEECC---CTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCC
T ss_pred HHHccCCeEEEEEEE---CCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCC
Confidence 489999999999985 7788999999999999999999999876 5999999999999988653
No 76
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=91.29 Aligned_cols=63 Identities=29% Similarity=0.664 Sum_probs=56.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. ++. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++....
T Consensus 35 ~f~~~G~v~~v~i~~---~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 35 MFGQFGKILDVEIIF---NER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp HGGGTSCEEEEEEEC---CTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCC
T ss_pred HHHhcCCeEEEEEEe---cCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCC
Confidence 589999999999985 332 389999999999999999999999999999999999999876544
No 77
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=8.7e-14 Score=93.69 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=55.5
Q ss_pred CCCCCcceeEEEEeeccCCCCC--CCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKR--GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~t--g~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.|+. ++.+ ++++||+||+|.+.++|.+|+..|||..|.||.|.|.++......
T Consensus 35 ~f~k~G~V~~v~i~~---~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 35 ECSKYGLVKSIEIPR---PVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp HHHTTSCEEEEECCC---CBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHccCCEEEEEEec---cCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHh
Confidence 378999999999885 4433 468999999999999999999999999999999999998775443
No 78
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=5.2e-14 Score=91.41 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=56.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. .+|+++|||||+|.+.++|..|+..|||..|.|+.|.|+++.+...
T Consensus 28 ~f~~~G~v~~~~i~~-----~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 28 KFNECGHVLYADIKM-----ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp HHHTTSCEEEEEEEE-----SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred HHHhcCCEEEEEEEc-----cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 488999999999984 3788999999999999999999999999999999999999988654
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.46 E-value=9.6e-14 Score=89.37 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=52.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a 61 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|.+|+ .+++..|.|+.|.|++|
T Consensus 31 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 31 YFTKFGEVVDCTIKM---DPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred HHHhCCCEEEEEEee---cCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 489999999999986 6788999999999999999999999 45889999999999986
No 80
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.8e-14 Score=95.63 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=58.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|..||.. |+..|.|+.|.|.++.++....
T Consensus 47 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 47 YYEQWGKLTDCVVMR---DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp HHTSSCCCSEEEEEC---CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCCC
T ss_pred HHHhcCCEEEEEEEE---CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccCC
Confidence 589999999999985 788899999999999999999999987 9999999999999998875443
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.2e-14 Score=94.40 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=55.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+|+|+. |+. |+++|||||+|.+.++|..||. +||..|.|+.|.|.++......
T Consensus 31 ~F~~~G~v~~v~i~~---d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~~~~~ 92 (103)
T 1s79_A 31 WLEDKGQVLNIQMRR---TLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDDYFAK 92 (103)
T ss_dssp HHHTSSCEEEEEEEC---CCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHHHHHH
T ss_pred HHhhcCCEEEEEEEE---CCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchHHHHH
Confidence 489999999999985 665 9999999999999999999997 9999999999999987764433
No 82
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.45 E-value=7.7e-14 Score=103.86 Aligned_cols=64 Identities=30% Similarity=0.478 Sum_probs=57.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLEDA 69 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~~ 69 (145)
+|++||.|.+++|+. | .+.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+|.++.....
T Consensus 123 ~F~~~G~i~~~~i~~---d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 123 TFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp HHGGGSCEEEEEEEE---E--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHH
T ss_pred HHhhcCCeEEEEeec---c--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccch
Confidence 489999999999986 3 344799999999999999999999999999999999999998765553
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-14 Score=95.49 Aligned_cols=59 Identities=25% Similarity=0.446 Sum_probs=53.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCe-eeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGR-PLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr-~l~V~~a~~~ 64 (145)
+|++||.|.++.|+ ..+|+++|||||+|.+.++|..||..|||..|.|+ .|.|.++...
T Consensus 41 ~F~~~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 41 IFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHGGGSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHhcCCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 48999999999886 25789999999999999999999999999999998 9999998764
No 84
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.45 E-value=5.9e-14 Score=97.58 Aligned_cols=58 Identities=33% Similarity=0.520 Sum_probs=53.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a 61 (145)
+|++||.|.+++++. |+.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|++|
T Consensus 83 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 83 AFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHGGGSCEEEEECCC---CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHhcCCEEEEEEee---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 489999999999885 7789999999999999999999999999999999999999986
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.8e-14 Score=94.93 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCCCCcce-eEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhhh
Q 032211 1 MFSPYGKI-VSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLEDA 69 (145)
Q Consensus 1 lFs~~G~I-~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~~ 69 (145)
+|++||.| .+|+|+. |+ +|+++|||||+|.+.++|.+||.. |+..|.|+.|.|.++.++.....
T Consensus 35 ~F~~~g~v~~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~~ 99 (114)
T 2cpy_A 35 FLEGIPVDENAVHVLV---DN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMREI 99 (114)
T ss_dssp HTTTSCCCSTTEEECC---CT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHHH
T ss_pred HHHhCCCcCCeEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHHH
Confidence 59999999 8898885 66 899999999999999999999976 99999999999999988765553
No 86
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.9e-14 Score=93.63 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=58.1
Q ss_pred CCCCCcc-eeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc--CCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGK-IVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH--GRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~-I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln--g~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||. |.++.++. ++..+|+++|||||+|.+.++|..|+..|| +..|.|+.|.|.|+.++....
T Consensus 28 ~f~~~G~~v~~v~i~~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 28 EIAKVTEGVLDVIVYA--SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVD 96 (109)
T ss_dssp HHHHHSTTEEEEECCS--SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCSTT
T ss_pred HHHHhcCCceEEEEEc--cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCcC
Confidence 4889998 99998873 377889999999999999999999999996 589999999999999876544
No 87
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=2.8e-14 Score=99.93 Aligned_cols=65 Identities=29% Similarity=0.435 Sum_probs=59.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|+|+.+.....
T Consensus 67 ~F~~~G~i~~v~i~~---~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 67 VFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHGGGSCCSEEECCC---CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HHHhcCCEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 489999999999885 67789999999999999999999999999999999999999998875444
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=91.92 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=54.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.|+. |+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.+....
T Consensus 35 ~F~~~G~i~~v~i~~---~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 35 LFSQIGPCKSCKMIT---EH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp HHHHHSCEEEEEEEC---CC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred HHHhcCCEeEEEEEe---cC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 488999999999985 43 337899999999999999999999999999999999999886543
No 89
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=91.19 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=56.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. |+.+|+++|||||+|.+.++|..||. +++.|.|+.|.|.++.++....
T Consensus 35 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 35 YFSTFGEVLMVQVKK---DLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp HHGGGSCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCCC
T ss_pred HHHhcCCeEEEEEEe---cCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcCC
Confidence 489999999999986 67789999999999999999999997 5789999999999998875543
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=92.46 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=54.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.|+. ++.++|||||+|.+.++|..||+.||+..|.|+.|.|+|+.+....
T Consensus 42 ~F~~~G~v~~~~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 42 VFYKYGAIRDIDLKN------RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp HHGGGSCEEEEEECC------SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred HHHhcCCeEEEEEEE------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 589999999998863 4568999999999999999999999999999999999999886533
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=4.7e-14 Score=88.66 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=53.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a 61 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|..|+..+| ..+.|+.|.|++|
T Consensus 20 ~F~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 20 YFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHTTTSCCCCEEEEC---CCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHhcCCEEEEEEec---CCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 489999999999985 77889999999999999999999999999 9999999999987
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3e-13 Score=95.39 Aligned_cols=60 Identities=27% Similarity=0.645 Sum_probs=56.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE 63 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~ 63 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||.+
T Consensus 107 ~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 107 AFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHhccCCeeEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 489999999999986 678899999999999999999999999999999999999999864
No 93
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.43 E-value=5.6e-14 Score=106.56 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=59.0
Q ss_pred CCCCCc--ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYG--KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G--~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++|| .|.+|+|+. |+.+|+++|||||+|.+.++|.+||..|||+.|.|+.|.|.+|.+....
T Consensus 88 ~F~~~G~~~v~~v~i~~---d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~~~ 153 (229)
T 3q2s_C 88 AVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFLS 153 (229)
T ss_dssp HHHTTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHHHH
T ss_pred HHHHHCCcceEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCccc
Confidence 589999 999999996 7889999999999999999999999999999999999999999876543
No 94
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=5.2e-14 Score=92.29 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=55.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.++....
T Consensus 32 ~f~~~G~i~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 93 (97)
T 1nu4_A 32 IFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDII 93 (97)
T ss_dssp HHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTHH
T ss_pred HHHhCCCEEEEEEEc------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCccc
Confidence 489999999988762 57789999999999999999999999999999999999999876554
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.1e-13 Score=93.29 Aligned_cols=60 Identities=30% Similarity=0.649 Sum_probs=54.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.+++++. |+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|+++.++.
T Consensus 49 ~F~~~G~i~~v~i~~---~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 49 MFGQFGKILDVEIIF---NE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp HGGGTCCCSCEEECC---BT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred HHHhcCCEEEEEEEE---CC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 589999999999985 33 3489999999999999999999999999999999999998763
No 96
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.43 E-value=2.4e-13 Score=100.15 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=59.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++++. ++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+.+...
T Consensus 145 ~f~~~G~v~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 145 VFEAFGKIKSATLAR---DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHTTSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHhccCCeeEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 489999999999986 67789999999999999999999999999999999999999998875444
No 97
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-14 Score=98.47 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=58.7
Q ss_pred CCCCCcceeE--------EEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVS--------EDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~--------~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+ ++|+. |+.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.++....
T Consensus 27 ~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 27 YFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFN 99 (116)
Confidence 5999999998 77875 67889999999999999999999999999999999999999998875443
No 98
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=3.3e-13 Score=92.77 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCCCcceeEEEEeeccCC-CCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 2 FSPYGKIVSEDFLWHTRG-PKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 2 Fs~~G~I~~~~i~~~~rd-~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
|++||.|.++.|+.+... ..+++++||+||+|.+.++|.+|+..|||..|.||.|.|.++....
T Consensus 46 f~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 46 CGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 110 (118)
T ss_dssp HTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred HhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHh
Confidence 789999999999874211 1256789999999999999999999999999999999999987643
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=4.7e-14 Score=89.97 Aligned_cols=53 Identities=26% Similarity=0.478 Sum_probs=48.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCe-eeEE
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGR-PLVV 58 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr-~l~V 58 (145)
+|++||.|.++.++ +.+|+++|||||+|.+.++|..|+..|||..|.|+ +|.|
T Consensus 27 ~F~~~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 27 IFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHhhcCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 48999999999876 35889999999999999999999999999999999 8876
No 100
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.6e-13 Score=89.29 Aligned_cols=59 Identities=31% Similarity=0.493 Sum_probs=53.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|. +++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++....
T Consensus 33 ~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 33 AFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 91 (97)
T ss_dssp HHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCCC
T ss_pred HHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCCC
Confidence 58999999999885 268999999999999999999999999999999999998875443
No 101
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.41 E-value=8.4e-14 Score=97.20 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=54.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEcc----HHH----HHHHHH--HhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYST----KEE----AKLAKE--KMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~----~e~----A~~Ai~--~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|+.||.|.++.++. ||.||+++|||||+|.+ +++ |.+|+. .+||..|+|+.|+|.+......
T Consensus 26 ~Fs~fGeV~~~~li~---Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 26 YFKKYGEISHFEAFN---DPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHSIL 98 (136)
T ss_dssp HHHTTSCCSEEEEEE---CTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTTHH
T ss_pred HHHhcCCeEEEEEEe---cCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcccHH
Confidence 489999999999997 89999999999999996 433 788988 7899999999999998766544
No 102
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=2.3e-13 Score=93.06 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCCCCcc---eeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGK---IVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~---I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||. |.+|+|+. |+. |+++|||||+|.+.++|.+||. +|+..|.|+.|.|.++.++....
T Consensus 37 ~F~~~G~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~ 102 (118)
T 2db1_A 37 FLSDCTIHDGVAGVHFIY---TRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMDW 102 (118)
T ss_dssp HTTTSCBTTGGGGEEEEE---CSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHHH
T ss_pred HHHHcCCccCceeEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHHH
Confidence 5899999 89999986 554 8999999999999999999998 99999999999999998765443
No 103
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=88.14 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=54.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++| .|.+++|+. + .+|+++|||||+|.+.++|.+||. |||..|.|+.|.|.++.+++
T Consensus 30 ~F~~~-~i~~v~i~~---~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 30 FLAPL-KPVAIRIVR---N-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp HHTTS-CCSEEEEEE---C-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred HHhhC-CceEEEEEE---C-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 48899 899999986 5 689999999999999999999999 99999999999999998864
No 104
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3e-13 Score=90.79 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=50.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCC--eeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGR--LACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~--~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.|+. .+|||||+|.+.++|..||+.||+. .|.|++|.|.||.....
T Consensus 36 lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 36 LVEPFGVISNHLILN---------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp TTGGGSCEEEEEECS---------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred HHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 699999999999874 3699999999999999999999865 59999999999987543
No 105
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.7e-13 Score=91.05 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.|. |+ .++|||||+|.+.++|..|+..|||..|.|++|.|.++.++...
T Consensus 46 ~f~~~G~v~~v~i~----~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 46 ECSKFGQIRKLLLF----DR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp HGGGTSCCSEEEEE----TT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCS
T ss_pred HHHccCCEeEEEEe----cC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCc
Confidence 48999999999663 33 27999999999999999999999999999999999999886543
No 106
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.40 E-value=2.5e-13 Score=91.76 Aligned_cols=60 Identities=27% Similarity=0.280 Sum_probs=53.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.+...
T Consensus 28 ~F~~~G~v~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 28 IFGKYGPIRQIRVGN------TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp HHHTTSCEEEEEEEC------STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred HHHhcCCeEEEEEee------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 489999999999984 345699999999999999999999999999999999999987643
No 107
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.1e-13 Score=92.28 Aligned_cols=57 Identities=19% Similarity=0.095 Sum_probs=51.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.|+. ++|||||+|.+.++|..||..|||..|.|+.|.|.||.....
T Consensus 30 ~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 30 TFSRFGSLGRVLLPE---------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp HHHTTSCEEEEECCS---------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred HHHhcCCEEEEEEeC---------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 589999999988762 689999999999999999999999999999999999977543
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.39 E-value=3.8e-13 Score=90.04 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCe--eCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRL--ACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~--i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.++. +||||||+|.+.++|..|++.||+.. |.|++|.|.|++++.
T Consensus 41 lF~~fG~V~~v~i~~---------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 41 ALQEFGPISYVVVMP---------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHGGGSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHhccCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 589999999999873 58999999999999999999999886 789999999998764
No 109
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.5e-13 Score=89.45 Aligned_cols=59 Identities=27% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++|| +++++|+. |+ +|+++|||||+|.+.++|.+|| .+|+..|.||.|.|.++.+..
T Consensus 35 ~F~~~G-~~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 35 FFSPLN-PMRVHIEI---GP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp SSCSCC-CSEEEEEE---SS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred HHHHcC-ceEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCC
Confidence 699999 55999986 56 8999999999999999999999 689999999999999887654
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.5e-12 Score=87.13 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=51.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHh--cCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKM--HGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~l--ng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. .||||||+|.+.++|..|++.| ++..|.|++|.|.|+.++....
T Consensus 35 ~F~~fG~v~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 35 LGLPFGKVTNILMLK---------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp TTTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred HHHhcCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 699999999998873 2899999999999999999977 4678999999999998765443
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.6e-14 Score=96.59 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=55.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++. +..+|+++|||||+|.+.++|..||. |||..|.|+.|.|.++.++...
T Consensus 45 ~F~~~G~v~~~~~~~---~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~ 107 (124)
T 1wel_A 45 FFKKLDIVEDSIYIA---YGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGML 107 (124)
T ss_dssp HSCSSCBCTTTCEEE---ECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHHH
T ss_pred HHHhcCCccceEEEE---ECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHHH
Confidence 599999998855554 45689999999999999999999998 9999999999999999887543
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.9e-13 Score=87.96 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=52.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.| +++. + .+|+++|||||+|.+.++|.+||..|||..|.|+.|.|+|+.++...
T Consensus 35 ~F~~~g~v---~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 35 VFEKATFI---KVPQ---N-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp HCSSCSEE---ECCB---C-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred HHHhCCEE---EEEE---C-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 58999987 4553 4 57899999999999999999999999999999999999999887543
No 113
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=91.84 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCCCCcc---eeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGK---IVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~---I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|+.||. |.+|+|+. |+. |+++|||||+|.+.++|..||. +|+..|.|+.|.|.++.++....
T Consensus 31 ~F~~~g~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~~ 96 (107)
T 2lmi_A 31 FFSDCRIRNGENGIHFLL---NRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVDA 96 (107)
T ss_dssp HTTTSCBTTTTTTEECCC---CTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHHH
T ss_pred HHHhcCCcCCcceEEEEE---CCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHHH
Confidence 4889888 89999885 665 9999999999999999999998 99999999999999998865444
No 114
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.37 E-value=2.7e-13 Score=96.10 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=55.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|.+|++ +||..|.|+.|.|.||.++
T Consensus 107 ~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 107 FFSQWGTIIDAQLML---DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHTTSCCSEEECCC---SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHhCccEEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 488999999999885 67789999999999999999999997 8999999999999999886
No 115
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.37 E-value=1e-12 Score=108.21 Aligned_cols=64 Identities=28% Similarity=0.569 Sum_probs=59.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|..|.|+. |+.+|+++|||||+|.+.++|..||..|||+.|.|+.|.|.|+.+....
T Consensus 122 ~F~~~G~I~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 122 EFEVYGPIKRIHMVY---SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred HHHHcCCeeEEEeec---cCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCC
Confidence 599999999999986 6789999999999999999999999999999999999999999876543
No 116
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=6e-13 Score=94.72 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=55.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.++.++. ++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|+||.
T Consensus 114 ~f~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTSCEEEEEEEE---CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHhcCCceEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 488999999999986 67789999999999999999999999999999999999999973
No 117
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.1e-13 Score=88.44 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCCCCcceeE-EEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVS-EDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~-~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.+ +.|+. | .+|+++|||||+|.+.++|.+||.. |+..|.|+.|.|.++.+..
T Consensus 35 ~F~~~G~v~~~v~i~~---~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 35 FFSGLEIVPNGMTLPV---D-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HTTTCCEEEEEEECCB---C-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred HHHhcCCcceeEEEEE---C-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 5999999987 77775 5 6899999999999999999999987 9999999999999987654
No 118
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=85.71 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=52.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|+.|+ ++.++. ++.+++++|||||+|.+.++|..||..|||..|.|+.|.|.|+.++...
T Consensus 35 ~F~~~~---~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 35 SFDGSV---RARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp TSTTCS---EEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred HhcCCe---EEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 577664 566665 6778999999999999999999999999999999999999999887544
No 119
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=9.6e-13 Score=95.48 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=54.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.+|.++....
T Consensus 124 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 124 YFEQYGKIEVIEIMT---DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred HHhcCCCeEEEEEee---cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 489999999999986 677899999999999999999999976 8999999999999999987665
No 120
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=6.7e-13 Score=90.56 Aligned_cols=59 Identities=27% Similarity=0.270 Sum_probs=51.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcC--CeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHG--RLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng--~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. +||||||+|.+.++|..||+.||+ ..|.|++|.|.||..+....
T Consensus 46 lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 46 LAEPYGKIKNYILMR---------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred HHHhcCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 699999999999873 589999999999999999998864 56999999999998765443
No 121
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.36 E-value=7e-13 Score=88.08 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=51.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++ +|||||+|.+.++|..||..|||..|.|+.|.|.|+.+.....
T Consensus 31 ~F~~~G~i~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 31 AFSQFGKLERVKKL-----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp HHHHHSCEEEEEEC-----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred HHHhcCCEEEEEEE-----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 48899999998875 5799999999999999999999999999999999999876554
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=7.2e-13 Score=87.04 Aligned_cols=57 Identities=30% Similarity=0.379 Sum_probs=51.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeC--CeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLAC--GRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~--gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. .+|||||+|.+.++|..|+..|||..|. |+.|.|.|+.+++.
T Consensus 37 ~F~~~G~v~~v~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 37 EFDRFGSIRTIDHVK---------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp HHHTTSCEEEEEECS---------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred HHHhcCCeeEEEEeC---------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 489999999998863 2799999999999999999999999999 99999999988653
No 123
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=6.9e-13 Score=87.43 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=52.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++. ++|||||+|.+.++|..|++.|||..|.|+.|.|.++.++...
T Consensus 35 ~F~~~G~i~~v~~~~---------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 35 LFEKYGKAGEVFIHK---------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASL 92 (99)
T ss_dssp HTSTTCCCSEEEEET---------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSCC
T ss_pred HHhhcCCeEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCCC
Confidence 599999999998873 4799999999999999999999999999999999999886543
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.3e-13 Score=89.56 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=51.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|. +.++. ++++|||||+|.+.++|..|+..|||..|.|+.|.|+++.++.
T Consensus 39 ~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 39 ALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp HHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred HHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 488999996 66663 3589999999999999999999999999999999999998864
No 125
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=6.3e-13 Score=96.62 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=57.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++.++. ++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++.
T Consensus 134 ~f~~~G~v~~~~~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 134 LLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHTBSCEEEEEEEE---CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHcCCccEEEEee---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 488999999999986 67789999999999999999999999999999999999999998864
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=4.4e-13 Score=88.59 Aligned_cols=60 Identities=28% Similarity=0.506 Sum_probs=54.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++. + ++|||||+|.+.++|..|+..|||..|.|+.|.|+++.+.....
T Consensus 20 ~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 20 AFSYYGPLRTVWIAR---N-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp HHHHHCCCSEEEEES---S-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred HHHhcCCeEEEEEee---C-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 488999999999984 2 78999999999999999999999999999999999999876443
No 127
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=1.7e-12 Score=91.50 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=58.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+....
T Consensus 22 ~f~~~G~i~~v~~~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 85 (167)
T 1fxl_A 22 LFGSIGEIESCKLVR---DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 85 (167)
T ss_dssp HHHTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGG
T ss_pred HHHhcCCeEEEEEEe---CCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Confidence 488999999999986 6778999999999999999999999999999999999999999876543
No 128
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.5e-13 Score=91.72 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=51.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc--CCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH--GRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln--g~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. .||||||+|.+.++|..||+.|+ +..|.|++|.|.||.++....
T Consensus 36 lF~~fG~V~~v~i~~---------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 36 LGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp HHHHHCCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred HHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 589999999999983 27999999999999999999886 478999999999998875544
No 129
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.36 E-value=3.2e-13 Score=91.91 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=50.5
Q ss_pred CCCCCc-ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYG-KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G-~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++|| .|..+.|+. +.++|||||+|.+.++|++||+.|||..|.|+.|.|+++...+
T Consensus 48 ~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 48 LARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp HHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred HHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 488999 899988752 2489999999999999999999999999999999999987654
No 130
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=6.2e-14 Score=98.43 Aligned_cols=68 Identities=28% Similarity=0.447 Sum_probs=53.0
Q ss_pred CCCCCcceeEEE--EeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSED--FLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~--i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|..+. ++.+.+...+|+++|||||+|.+.++|..||..|||..|.|+.|.|.+|.+.....
T Consensus 65 ~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 65 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQ 134 (143)
T ss_dssp HHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC--
T ss_pred HHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCcc
Confidence 489999987641 11100113478899999999999999999999999999999999999998765443
No 131
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5.5e-13 Score=89.45 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=53.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++++. .+|||||+|.+.++|..|+..|||..|.|+.|.|.|+.+.....
T Consensus 45 ~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 45 TFSPFGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp HHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred HHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence 488999999999984 28999999999999999999999999999999999999876544
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.2e-13 Score=90.57 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=53.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|..+.+.. +..+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.++....
T Consensus 45 ~f~~~G~v~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 45 LFARFQEKKGPPIQF---RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp HTHHHHHSSSSCCEE---EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred HHHHhCCccceEEEE---EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 488999994432222 12278899999999999999999999999999999999999999875443
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.35 E-value=9.8e-14 Score=86.85 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=51.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLA 61 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a 61 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|..|+. +++..|.|+.|.|++|
T Consensus 19 ~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 19 YFGGFGEVESIELPM---DNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHSCCSEECCCC---SCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHhcCCeEEEEEEe---cCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 488999999998874 77889999999999999999999997 5999999999999886
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.35 E-value=6e-13 Score=97.19 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=57.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+|.|+. |+ +|.++|||||+|.+.++|..||..|||..|.|+.|.|+||.+....
T Consensus 108 ~F~~~G~I~~v~i~~---d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~ 170 (177)
T 2f3j_A 108 LFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 170 (177)
T ss_dssp HHHHTSCCSEEEECC---CT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGG
T ss_pred HHHhcCCeEEEEEEE---CC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 588999999999985 56 8999999999999999999999999999999999999999876443
No 135
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=1.8e-12 Score=88.66 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
.|++||.|.++.|.. +. ++||+||+|.+.++|.+|+..|||..|.||.|.|.|+.......
T Consensus 37 ~f~kfG~V~~v~i~~---~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 37 ECNKHGGVIHIYVDK---NS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp HHTTTTCCSEEEECT---TC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred HHhccCCEEEEEEec---CC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence 389999999998863 32 58999999999999999999999999999999999987765544
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.7e-13 Score=88.97 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=50.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.+++++. ++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.++
T Consensus 47 ~f~~~G~i~~~~~~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 47 LFQNFGFILDFKHYP---------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred HHHhCCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 488999999998872 6899999999999999999999999999999999998764
No 137
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.35 E-value=4.7e-13 Score=94.14 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=55.6
Q ss_pred CCCCCcc---eeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGK---IVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~---I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||. |.+|+|+. |+. |+++|||||+|.+.++|.+||+ +|+..|.||.|.|.++.++...
T Consensus 64 ~F~~~G~v~~v~~v~i~~---d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e~~ 128 (136)
T 2hgl_A 64 FLSDCTIHDGAAGVHFIY---TRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTEMD 128 (136)
T ss_dssp HTTTCCCSSSSTTEEEEE---CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHHHH
T ss_pred HHHHhCCcCceeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHHHH
Confidence 5999999 88999986 565 9999999999999999999998 9999999999999998776543
No 138
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.35 E-value=3.4e-14 Score=94.05 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.. .++. ++.+|+++|||||+|.+.++|.+||+ |||..|.|+.|.|.++.++...
T Consensus 37 ~F~~~G~v~~-~~~~---~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 37 AISELFAKND-LAVV---DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp HHHHHHHHHT-CCCC---EEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCS
T ss_pred HHHHhCCcce-EEEe---cCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCC
Confidence 4788999887 4443 56788999999999999999999998 9999999999999999886543
No 139
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=8.8e-13 Score=88.63 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCC--eeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGR--LACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~--~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++. .||||||+|.+.++|..|++.|++. .|.|++|.|.|+.++...
T Consensus 35 ~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 35 ALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 589999999998873 3799999999999999999988765 489999999999876543
No 140
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=9.9e-13 Score=84.09 Aligned_cols=53 Identities=28% Similarity=0.461 Sum_probs=49.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHh-cCCeeCCeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKM-HGRLACGRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~l-ng~~i~gr~l~V~~a~ 62 (145)
+|++||.|.++.++. ++|||||+|.+.++|..|+..| ||..+.|+.|.|+||+
T Consensus 32 ~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 32 HFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 488999999999984 4899999999999999999999 9999999999999974
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.34 E-value=1.8e-12 Score=85.58 Aligned_cols=54 Identities=26% Similarity=0.554 Sum_probs=49.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.++++. +|||||+|.+.++|..|+..|||..|.|+.|.|+++.+..
T Consensus 43 ~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 43 IFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp HHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred HHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 48999999998773 7999999999999999999999999999999999998753
No 142
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=8.7e-13 Score=90.73 Aligned_cols=59 Identities=31% Similarity=0.493 Sum_probs=52.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.+. .++|||||+|.+.++|..||..|||..|.|+.|.|.|+.+.....
T Consensus 57 ~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 57 AFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 115 (121)
T ss_dssp HHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC--
T ss_pred HHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCCC
Confidence 48999999999885 268999999999999999999999999999999999999875444
No 143
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=84.67 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=51.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.++ +|||||+|.+.++|..|+..|||..|.|+.|.|+++.++....
T Consensus 28 ~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 28 LFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKAS 84 (90)
T ss_dssp HHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCCC
T ss_pred HHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCCC
Confidence 48999999999885 6899999999999999999999999999999999998875443
No 144
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=9.8e-13 Score=90.64 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=52.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc--CCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH--GRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln--g~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. .||||||+|.+.++|..|++.|+ +..|.|++|.|.|+.++....
T Consensus 51 lF~~fG~V~~v~i~~---------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 51 LGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp HHTTTSCCCEEEEEG---------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred HHHhcCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 589999999999984 38999999999999999999887 468999999999998876554
No 145
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=1.2e-12 Score=94.76 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=52.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCC--eeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~g--r~l~V~~a~~~~~~ 67 (145)
+|++||.|.+|.|+. ..++|||||+|.+.++|..|++.|||..|+| +.|.|+|++++...
T Consensus 66 ~Fs~fG~V~~V~i~~-------k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 66 IFSKFGTVLKIITFT-------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 127 (164)
T ss_dssp HHHHHSCEEEEEEEE-------SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCC
T ss_pred HHHhcCCEEEEEEEe-------CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCccc
Confidence 589999999999863 1258999999999999999999999999976 99999999987543
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.33 E-value=4.6e-13 Score=88.64 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=54.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++++. |+ +|+++|||||+|.+.++|..|+. ++..|.|+.|.|.++.++....
T Consensus 29 ~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~~~ 90 (102)
T 2xs2_A 29 FFARYGSVKEVKIIT---DR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQNLS 90 (102)
T ss_dssp HHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC---
T ss_pred HHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcchh
Confidence 489999999999986 66 89999999999999999999997 9999999999999998765443
No 147
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.33 E-value=1.4e-12 Score=92.32 Aligned_cols=63 Identities=21% Similarity=0.345 Sum_probs=57.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. ++.+|+++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+...
T Consensus 23 ~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 23 LFRAIGPINTCRIMR---DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp HHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred HHHhcCCeeEEEEEE---eCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 488999999999986 677899999999999999999999999999999999999999987653
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.32 E-value=2.5e-12 Score=91.03 Aligned_cols=58 Identities=41% Similarity=0.733 Sum_probs=53.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCC--eeeEEEEc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG--RPLVVRLA 61 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~g--r~l~V~~a 61 (145)
+|++||.|..+.++. ++.+|.++|||||+|.+.++|.+|+..|||..|.| ++|.|.||
T Consensus 109 ~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 109 IFGKYGSIVQKNILR---DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTSSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred hhhcCCcEEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 489999999999985 67789999999999999999999999999999988 99999986
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.7e-12 Score=86.91 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++| .|.+|.|+. |+. |+++|||||+|.+.++|.+|| .+|+..|.||.|.|..+.+....
T Consensus 36 ~F~~~-~v~~v~i~~---d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~ 96 (109)
T 2dnn_A 36 FFHGL-RVDAVHLLK---DHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWV 96 (109)
T ss_dssp HTTTS-CCCEEEECC---CTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHH
T ss_pred HhccC-CeeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchh
Confidence 58999 899999986 554 999999999999999999999 79999999999999998775443
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.3e-12 Score=85.83 Aligned_cols=57 Identities=25% Similarity=0.503 Sum_probs=50.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.+. +|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.....
T Consensus 31 ~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 87 (96)
T 2kvi_A 31 IFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARPQ 87 (96)
T ss_dssp HHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC--
T ss_pred HHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCCC
Confidence 48999999998873 7999999999999999999999999999999999998765544
No 151
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=3.3e-12 Score=89.24 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccE-EEEEEccHHHHHHHHHHhcCCeeCC--eeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGF-AFIEYSTKEEAKLAKEKMHGRLACG--RPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~-~FV~f~~~e~A~~Ai~~lng~~i~g--r~l~V~~a~~~~~~ 67 (145)
+|++||.|.+|.++.. ++|| |||+|.+.++|..|++.|||..|+| +.|+|+|+++....
T Consensus 48 lFs~yG~V~~V~i~~~--------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 48 IFSKFGTVLKIITFTK--------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp HHTTSSCEEEEEEEEE--------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred HHhCcCCEEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCcee
Confidence 5999999999988741 3688 9999999999999999999999998 99999999987544
No 152
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=84.18 Aligned_cols=56 Identities=21% Similarity=0.425 Sum_probs=50.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++ ++||||+|.+.++|..|+..|||..|.|+.|.|+++.++...
T Consensus 30 ~F~~~G~v~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 30 KFEEYGPVIECDIV-----------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHHTTSCCCEEEEC-----------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred HHHhcCCeEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 48999999999886 459999999999999999999999999999999999887543
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.32 E-value=1.1e-12 Score=92.62 Aligned_cols=57 Identities=32% Similarity=0.529 Sum_probs=52.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.+++++. | ++|||||+|.+.++|..|+..|||..|.|++|.|.|+.+++
T Consensus 93 ~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 93 AFGYYGPLRSVWVAR---N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHSCEEEEEECS---S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHhhCCEEEEEEee---C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 488999999999984 3 68999999999999999999999999999999999998864
No 154
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.9e-12 Score=86.83 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=52.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCC-----eeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG-----RPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~g-----r~l~V~~a~~~~~~~ 68 (145)
+|++||.|.++.|+. | |||||+|.+.++|..||+.|||..|.| +.|.|.++.++....
T Consensus 35 ~F~~~G~i~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 35 HMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp HHGGGSCEEEEEEET---T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCCC
T ss_pred HHHhcCCEeEEEEec---C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCCC
Confidence 589999999999984 2 999999999999999999999999999 999999999865433
No 155
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.31 E-value=2.2e-12 Score=86.88 Aligned_cols=56 Identities=32% Similarity=0.576 Sum_probs=50.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...+
T Consensus 51 ~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 51 IFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp HHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred HHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 48999999999885 699999999999999999999999999999999999887543
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.31 E-value=3.6e-12 Score=94.76 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=59.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+|+|+. |+.+|+++|||||+|.+.++|.+||..+|+..+.|+.|.|.++.......
T Consensus 35 ~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~ 99 (213)
T 4f02_A 35 KFSPAGPILSIRVCR---DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 99 (213)
T ss_dssp HHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH
T ss_pred HHHhhCCEEEEEEec---ccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc
Confidence 589999999999985 78899999999999999999999999999999999999999988765544
No 157
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=86.46 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=49.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+|.|+ ++++|||||+|.+.++|..||+.+++ +.|++|.|.|+.+.+..
T Consensus 37 ~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 37 LLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp HHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred HHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 58999999999886 25799999999999999999988554 67999999999887543
No 158
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=83.90 Aligned_cols=55 Identities=22% Similarity=0.492 Sum_probs=50.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++ ++||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 29 ~F~~~G~v~~~~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 29 LFERRGRVIECDVV-----------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp HHHHHSCEEEEEEC-----------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHcCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 48899999999886 45999999999999999999999999999999999988743
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.30 E-value=3.5e-12 Score=89.86 Aligned_cols=58 Identities=33% Similarity=0.643 Sum_probs=52.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCee--eEEEEc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRP--LVVRLA 61 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~--l~V~~a 61 (145)
+|++||.|.+++++. ++.+|.++|||||+|.+.++|.+|++.|||..|.|+. |.|.||
T Consensus 108 ~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 108 LFSQYGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCEeEEEEEe---cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 489999999999986 6778999999999999999999999999999999965 888886
No 160
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.29 E-value=1.4e-12 Score=85.31 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=51.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|..+ . .+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++..
T Consensus 36 ~F~~~g~v~~~---~-----~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 36 VFEDALEIRLV---S-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp HHCSEEEECCE---E-----ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred HHhhCCcEEEe---C-----CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 48889988665 1 3678999999999999999999999999999999999999988654
No 161
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.3e-12 Score=89.35 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=50.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCee-----CCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA-----CGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i-----~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.|+. .||||||+|.+.++|..|++.|||..| .|++|.|.|+...+.
T Consensus 47 ~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 47 VLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp HHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred HHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 489999999987752 379999999999999999999999998 689999999886543
No 162
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.27 E-value=6.8e-12 Score=96.42 Aligned_cols=64 Identities=25% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. |+ +|.++|||||+|.+.++|.+|+..|||..|.|++|.|.|+.++....
T Consensus 205 ~f~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 205 ALSAVHSPTFCQLAC---GQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HTCSSSCCSEEEEEE---CS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HhhCCCCeEEEEEEE---CC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 599999999999886 44 78999999999999999999999999999999999999999887655
No 163
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=6.8e-12 Score=86.97 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=50.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccE-EEEEEccHHHHHHHHHHhcCCeeCC--eeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGF-AFIEYSTKEEAKLAKEKMHGRLACG--RPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~-~FV~f~~~e~A~~Ai~~lng~~i~g--r~l~V~~a~~~~~~ 67 (145)
+|++||.|.+|.|+. . .|| |||+|.+.++|..|++.|||..|.| +.|.|.+|+++...
T Consensus 45 ~Fs~yG~V~~v~i~~----~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 45 VCNPVGKVQRIVIFK----R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp HHTTTSCEEEEEEEE----S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred HHHhcCCEEEEEEEe----C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 599999999999863 1 286 9999999999999999999999988 68999999987643
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.4e-12 Score=84.85 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=48.9
Q ss_pred CCCCCcc-eeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcC-CeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGK-IVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHG-RLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~-I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng-~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||. |..+.+. ++|||||+|.+.++|..|+..||| ..|.|+.|.|.++.++...
T Consensus 28 ~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 28 LFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred HHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 4889999 5554443 589999999999999999999999 9999999999999886543
No 165
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.5e-12 Score=83.03 Aligned_cols=55 Identities=27% Similarity=0.468 Sum_probs=49.7
Q ss_pred CCCCC--cceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPY--GKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~--G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++| |.|.++.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.++..
T Consensus 35 ~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 35 EFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp HHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred HHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 48899 999988763 68999999999999999999999999999999999988654
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.26 E-value=6.6e-12 Score=93.48 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=51.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.+|+|+. + ++|||||+|.+.++|..||+.|||..|.|+.|.|.++....
T Consensus 25 ~F~~~G~v~~v~i~~---~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 25 VFCLYGNVEKVKFMK---S-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp HHTTTSCEEEEEECT---T-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred HHHhcCCeEEEEEec---C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 589999999999984 2 48999999999999999999999999999999999987543
No 167
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.26 E-value=4.5e-12 Score=96.96 Aligned_cols=59 Identities=25% Similarity=0.386 Sum_probs=50.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCee------------CCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA------------CGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i------------~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|||..| .|+.|.|+||...+.+.
T Consensus 163 ~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 163 VFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp HHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred HHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCHH
Confidence 489999999999984 589999999999999999999999999 89999999999876554
No 168
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.26 E-value=4.3e-12 Score=97.93 Aligned_cols=61 Identities=28% Similarity=0.373 Sum_probs=54.2
Q ss_pred CCCCCcceeEEEEeeccCCCC-CCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPK-RGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~-tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.+++|+. ++. ||.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.||.+++
T Consensus 231 ~F~~~G~v~~v~i~~---~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 231 SFEGFGSIEKINIPA---GQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHGGGSCEEEEECCS---CCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHhccCCeeEEEEEe---cCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 489999999999985 554 5999999999999999999999 999999999999999998863
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-12 Score=84.46 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=49.6
Q ss_pred CCCCC-cceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPY-GKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~-G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++| |+|.+| +| |||||.|.+.++|.+|++.|||..|.||+|.|.||..+++.-
T Consensus 33 lF~~yGG~Vl~V----------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 33 LSDNCGGKVLSI----------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp HHHTTTCCEEEC----------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred HHHHcCCeeEEE----------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 58999 599875 33 999999999999999999999999999999999999987665
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.26 E-value=7.4e-12 Score=92.06 Aligned_cols=64 Identities=36% Similarity=0.554 Sum_probs=55.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+++++. |+.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++......
T Consensus 48 ~f~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 111 (216)
T 2qfj_A 48 AFAPFGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQA 111 (216)
T ss_dssp HHGGGSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGG
T ss_pred HHHhCCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcccc
Confidence 489999999999985 6778999999999999999999999999999999999999988776533
No 171
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.26 E-value=2.6e-12 Score=86.21 Aligned_cols=55 Identities=31% Similarity=0.598 Sum_probs=50.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|+++.+...
T Consensus 48 ~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 48 IFSKYGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHGGGSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHhCCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 4899999999877 379999999999999999999999999999999999986543
No 172
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.5e-12 Score=82.78 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=49.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+| ++ ++.+|+ ||||+|.+.++|..||. |||..|.|+.|.|+++.++...
T Consensus 28 ~F~~~G~v~~v-~~----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 28 YFLAFGPVASV-VM----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp HGGGTSCEEEE-EE----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred HHHhcCCeEEE-EE----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 48999999987 33 566665 99999999999999998 9999999999999988765443
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=1e-11 Score=90.05 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=54.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|..||.. ++..|.|+.|.|.++.+....
T Consensus 33 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~ 95 (196)
T 1l3k_A 33 HFEQWGTLTDCVVMR---DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDS 95 (196)
T ss_dssp HHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC----
T ss_pred HHHhCCCEEEEEEEE---cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccc
Confidence 589999999999986 788999999999999999999999965 999999999999998876443
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.24 E-value=1.1e-11 Score=95.07 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=55.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.+|+++. +|+++|||||+|.+.++|..||+.|||..|.|+.|.|.|+.....
T Consensus 33 ~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 33 IFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred HHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 589999999998862 788999999999999999999999999999999999999977654
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.24 E-value=1.1e-11 Score=88.14 Aligned_cols=58 Identities=38% Similarity=0.692 Sum_probs=52.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeC---CeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLAC---GRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~---gr~l~V~~a~ 62 (145)
+|++||.|.++.++. ++ +|.++|||||+|.+.++|.+|+..|||..+. +++|.|.||.
T Consensus 115 ~F~~~G~i~~v~~~~---~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 115 MFSSFGQIEECRILR---GP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhCCCEEEEEEEE---CC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 489999999999986 44 5889999999999999999999999998876 4999999984
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=1.5e-12 Score=91.93 Aligned_cols=61 Identities=30% Similarity=0.263 Sum_probs=53.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++|| |++|.|+. |+. |+++|||||+|.+.++|.+|| .+|+..|.|+.|.|.++.+....
T Consensus 66 ~F~~~G-i~~v~i~~---d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 66 FFSPLN-PVRVHIEI---GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp HHCSCC-CSEEECCC---SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred HHHhcC-CeEEEEEE---CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 489999 77998885 564 999999999999999999999 89999999999999998876543
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2e-11 Score=85.82 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=55.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. ++ +|+++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+...
T Consensus 20 ~f~~~G~i~~v~i~~---~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 20 YFQVGGPIANIKIMI---DK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp HHGGGSCEEEEEEEC---CC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHhcCCeEEEEEEE---CC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 489999999999985 44 577999999999999999999999999999999999999877643
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=1.9e-11 Score=87.36 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=51.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||.+++
T Consensus 119 ~F~~~g~v~~~--------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 119 VFEDALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HCTTCSEEEEE--------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHhcCeEEEe--------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 48999988665 2478899999999999999999999999999999999999998863
No 179
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.19 E-value=2.2e-11 Score=78.64 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=49.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++| .|.++++. +++|||||+|.+.++|..|++.|||..+.|+.|.|+++....
T Consensus 25 ~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 25 LLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 48999 99998874 379999999999999999999999999999999999987654
No 180
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=80.57 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=49.8
Q ss_pred CCCCCcceeEEE-EeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSED-FLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~-i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.+++ ++. ++.+ |.|||+|.+.++|..|+..|||..|.|+.|.|.++.++
T Consensus 35 ~F~~~G~v~~~~~i~~---~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 35 LLVQYGVVESCEQVNT---DSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHSCEEEEEEECC---SSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHhcCCeEEEEEeec---CCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 488999999995 653 4443 34999999999999999999999999999999999887
No 181
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=3.3e-12 Score=88.35 Aligned_cols=63 Identities=24% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCCCCcce----eEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKI----VSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I----~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.| .+|.|+. | .+|+++|||||+|.+.++|.+||.. |+..|.||.|.|..+.++....
T Consensus 43 ~F~~~g~v~g~v~~v~i~~---d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~ 109 (123)
T 2dha_A 43 FFGQHCPITGGKEGILFVT---Y-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQ 109 (123)
T ss_dssp HHHTTSCCTTGGGGEEEEE---C-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHH
T ss_pred HHHhhCCccCCcceEEEEE---C-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHH
Confidence 48899875 6888886 5 4899999999999999999999975 9999999999999987765444
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.18 E-value=3.8e-11 Score=92.22 Aligned_cols=63 Identities=25% Similarity=0.482 Sum_probs=58.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.++.++. |+.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 115 ~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 115 LVRPFGSLERCFLVY---SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHhcCCeeEEEEEe---eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 488999999999986 678999999999999999999999999999999999999999987653
No 183
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.17 E-value=2.6e-11 Score=82.30 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=46.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCee-----eEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRP-----LVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~-----l~V~~a~~~ 64 (145)
+|++||.|.++.|+. | |||||+|.+.++|..||+.|||..|.|+. |.|..+.+.
T Consensus 36 ~F~~~G~v~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 36 HMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp HHGGGSCEEEEEECT---T-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred HHHhcCCeEEEEEec---C-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 589999999999873 2 99999999999999999999999999998 677666654
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.15 E-value=1.4e-11 Score=85.54 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=50.6
Q ss_pred CCCCCccee--EEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIV--SEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~--~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++| .|+ +|+|+. |+. |+++|||||+|.+.++|.+||. +++..|.||.|.|.++.++
T Consensus 62 ~F~~~-~i~~~~v~i~~---d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 62 FFSGL-EIVPNGITLPV---DPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp HTTTS-CEEEEEEECCC---CSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECHH
T ss_pred HHhcC-CceeeEEEEEE---CCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCHH
Confidence 58999 576 888885 665 9999999999999999999996 5789999999999988654
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.15 E-value=6e-11 Score=87.58 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.+|+|+. +. +|.++|||||+|.+.++|..|+..++ ..|.|+.|.|.++..-
T Consensus 129 ~F~~~G~v~~v~i~~---~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 129 WLEDKGQVLNIQMRR---TL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HHTTSCCEEEEEEEE---CT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred HHhcCCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 489999999999986 44 58899999999999999999996654 5999999999987654
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=5.6e-11 Score=80.36 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=47.2
Q ss_pred CCCCCcceeEEEEeeccCCCCC---CCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKR---GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~t---g~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|. +.++. +..+ |+++|||||+|.+.++|.+||+.|+ .+.|+.|.+..+.+.
T Consensus 28 ~F~~~G~i~-~~~~~---~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~~~ 88 (114)
T 2dnl_A 28 SFRRFGPLV-VDWPH---KAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSSPTI 88 (114)
T ss_dssp HTTTTCCCC-EECTT---SSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECCSSS
T ss_pred HHHhcCCEE-EEEee---cCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccCCCc
Confidence 599999999 77765 4445 8999999999999999999999985 477887777765543
No 187
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.12 E-value=7.3e-11 Score=76.67 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=42.7
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCee--CCeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLA--CGRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i--~gr~l~V~~a~~~~~ 66 (145)
+|++||.|.+++|+. + +||||||+|.+.++|. .+++..+ .|+.|.|.+|.++..
T Consensus 31 ~F~~~G~i~~v~i~~---~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 31 FFCQYGEVVDVFIPK---P-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp HHTTTSCEEEEECCS---S-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC----
T ss_pred HHhccCCEEEEEEee---C-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcCCCCc
Confidence 489999999999874 2 7999999999999988 3566665 589999999988653
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.12 E-value=4.3e-11 Score=84.59 Aligned_cols=62 Identities=18% Similarity=0.372 Sum_probs=54.8
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.+++++. |+.+|+++|||||+|.+.++|..|+. ++..+.|+.|.|.++.+....
T Consensus 23 ~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~~~~~ 84 (167)
T 2cjk_A 23 YFGKYGTVTDLKIMK---DPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIPRDEQ 84 (167)
T ss_dssp HHTTTCCEEEEECCC---CTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCCHHHH
T ss_pred HHHhCCCEEEEEEEE---CCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccchhhc
Confidence 489999999999985 78899999999999999999999997 467899999999998876543
No 189
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.12 E-value=1.4e-10 Score=86.55 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=55.6
Q ss_pred CCCCcceeEEEEeecc-CCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 2 FSPYGKIVSEDFLWHT-RGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 2 Fs~~G~I~~~~i~~~~-rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
|++||.|.++.|+.+. .+..+++++|++||+|.+.++|.+|+..|||..|.||.|.|.+.....
T Consensus 150 ~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 150 CGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp HTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 7899999999998532 134567899999999999999999999999999999999999987543
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.09 E-value=9.4e-11 Score=83.19 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=54.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCC--CCccEEEEEEccHHHHHHHHHHhcCCeeC---CeeeEEEEccccch
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRG--VPRGFAFIEYSTKEEAKLAKEKMHGRLAC---GRPLVVRLASEKYL 66 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg--~skG~~FV~f~~~e~A~~Ai~~lng~~i~---gr~l~V~~a~~~~~ 66 (145)
+|++||.|.+++++. ++.+| +++|||||+|.+.++|..|+..|||..+. ++.+.+.++.+...
T Consensus 23 ~F~~~G~i~~v~i~~---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 23 LFEQYGAVYEINVLR---DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp HHHTTSCEEEEEEEE---ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred HHHhCCCEEEEEEEe---cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence 489999999999986 56665 89999999999999999999999998876 68888888766543
No 191
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.6e-10 Score=75.64 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=48.8
Q ss_pred CCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchh
Q 032211 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 2 Fs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~ 67 (145)
|++||.|..++++. +.+||+|.+.+.|.+||. |||..+.||.|+|+++.+.+..
T Consensus 36 F~~~G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 36 FASFGEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSGPS 89 (91)
T ss_dssp HHTTCCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSSCS
T ss_pred HHhCCCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCccc
Confidence 88999999999984 228999999999999997 9999999999999999988754
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.04 E-value=2.4e-10 Score=87.67 Aligned_cols=54 Identities=17% Similarity=0.375 Sum_probs=49.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeC-CeeeEEEEcc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLAC-GRPLVVRLAS 62 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~-gr~l~V~~a~ 62 (145)
+|++||.|.+++++. + .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 227 ~F~~~G~i~~v~~~~---~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 227 LFNQFPGFKEVRLVP---G-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHhcCCeEEEEEec---C-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999984 2 2699999999999999999999999999 9999999986
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.02 E-value=2.8e-10 Score=86.94 Aligned_cols=63 Identities=27% Similarity=0.414 Sum_probs=54.3
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc-CCeeC---CeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH-GRLAC---GRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln-g~~i~---gr~l~V~~a~~~~~~ 67 (145)
+|++||.|.++.|+. | .+|+++|||||+|.+.++|..|+..|| +..+. +++|.|.++.+....
T Consensus 116 ~F~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 116 AFSQFGPVEKAVVVV---D-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHGGGSCEEEEEEEE---E-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEESS
T ss_pred HHHhcCCeEEEEeee---C-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCcc
Confidence 489999999999986 4 489999999999999999999999995 55554 899999999887543
No 194
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.01 E-value=1.7e-10 Score=73.69 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=40.2
Q ss_pred ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEE
Q 032211 7 KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60 (145)
Q Consensus 7 ~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~ 60 (145)
.|.++.++. ++|||||+|.+.++|..|+ .|||..|.|+.|.|+.
T Consensus 43 ~v~~~~~~~---------~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 43 PVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SEEEEEECS---------SSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred cceEEEecC---------CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 899988863 3899999999999999999 9999999999999974
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.00 E-value=4e-10 Score=84.50 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=50.5
Q ss_pred CCCCCc-ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeC-CeeeEEEEcccc
Q 032211 1 MFSPYG-KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLAC-GRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G-~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~-gr~l~V~~a~~~ 64 (145)
+|++|| .|.+++++. .++|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.+.
T Consensus 171 ~f~~~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 171 LFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHcCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 488999 999999863 14799999999999999999999999999 999999999874
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.00 E-value=2.3e-10 Score=88.14 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=50.5
Q ss_pred CCCCCc-ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccchhh
Q 032211 1 MFSPYG-KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G-~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++|| .|.++.++. ++ .|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.....
T Consensus 137 ~f~~~G~~i~~v~i~~---~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 201 (292)
T 2ghp_A 137 LLQDINVVALSIRLPS---LR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK 201 (292)
T ss_dssp HHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----
T ss_pred HHHHhCCCeEEEEEEe---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc
Confidence 488999 999999985 44 37899999999999999999999999999999999999998765443
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.99 E-value=2.3e-10 Score=85.75 Aligned_cols=56 Identities=21% Similarity=0.513 Sum_probs=51.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.+++++. ++ +|||||+|.+.++|..|++.|||..|.|+.|.|.++.+.
T Consensus 55 ~F~~~G~i~~v~i~~---~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 55 LFGVYGDVQRVKILF---NK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHTCEEEEEECC---TT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred HHHhCCCeEEEEEEE---CC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 488999999999985 32 799999999999999999999999999999999999865
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.97 E-value=2.1e-10 Score=83.54 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCCCCc-ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeC-CeeeEEEEcccc
Q 032211 1 MFSPYG-KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLAC-GRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G-~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~-gr~l~V~~a~~~ 64 (145)
+|++|| .|.+++++. + ++|||||+|.+.++|..|+..|||..|. |+.|.|.|+.+.
T Consensus 140 ~f~~~G~~v~~v~i~~---~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 140 LFSSNGGVVKGFKFFQ---K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHTTSCCCEEEESS---T-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHcCCCceEEEEEe---C-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 478999 999999863 1 3799999999999999999999999999 999999999864
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.96 E-value=2.1e-10 Score=83.52 Aligned_cols=57 Identities=21% Similarity=0.496 Sum_probs=51.6
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
+|++||.|.+++++. ++ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.+..
T Consensus 24 ~F~~~G~i~~v~i~~---~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 24 LFGVYGDVQRVKILF---NK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp HHHTTCCCSEEECST---TC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred HHHhcCCEEEEEEEe---CC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 489999999999884 32 7999999999999999999999999999999999998764
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.95 E-value=8.3e-10 Score=84.33 Aligned_cols=55 Identities=31% Similarity=0.556 Sum_probs=50.5
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
+|++||.|.++.+.. ++|||||+|.+.++|..|+..+||..|.|+.|.|.++.+.
T Consensus 42 ~F~~~G~i~~v~i~~---------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 42 LFERYGEPSEVFINR---------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp HTGGGCCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHhcCCEEEEEEeC---------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 599999999998863 4899999999999999999999999999999999998764
No 201
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.2e-10 Score=73.67 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=45.4
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCC--eeCCeeeEEEEccccchhh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGR--LACGRPLVVRLASEKYLED 68 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~--~i~gr~l~V~~a~~~~~~~ 68 (145)
+|++||.|.+++|+. + ++|||||+|.+.++|+.+ ++. .+.|+.|.|.++.++....
T Consensus 25 ~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 25 FFSQYGDVMDVFIPK---P-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp HSTTTSCCCEEECCS---S-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCCCCC
T ss_pred HHHHcCCeeEEEEec---C-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCCCCC
Confidence 599999999999874 2 789999999999999754 444 4589999999998875433
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.92 E-value=5.3e-10 Score=83.09 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=48.3
Q ss_pred CCCCCcce--eEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCe----eeEEEEc
Q 032211 1 MFSPYGKI--VSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGR----PLVVRLA 61 (145)
Q Consensus 1 lFs~~G~I--~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr----~l~V~~a 61 (145)
+|++||.| .+++++. + .|.++|||||+|.+.++|..||..|||+.|.|+ ++.|+||
T Consensus 143 ~F~~~G~v~~~~v~~~~---~--~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 143 ICDELGVKRPTSVKVFS---G--KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHTCCCCSEEEECS---C--CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHhcCCcceEEEEEEc---C--CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 58899999 8888874 3 355679999999999999999999999999875 7888876
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.89 E-value=7.7e-11 Score=84.11 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=49.9
Q ss_pred CCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 2 Fs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
|+.||.|..+. + ++..+|+++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.+...
T Consensus 34 f~~~g~~~~~~-~---~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 34 ISELFAKNDLA-V---VDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp HHHHHHHHTCC-C---CEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC
T ss_pred HHHhCCcceEE-E---EECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc
Confidence 66777776522 2 24567889999999999999999999 5999999999999999987644
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.82 E-value=3.4e-09 Score=84.79 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=46.1
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeC---Ce--eeEEEEcccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLAC---GR--PLVVRLASEK 64 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~---gr--~l~V~~a~~~ 64 (145)
+|++||.|.+|.+. + +||||||+|.+.++|.+||+.|||..+. |+ .|.|.|+...
T Consensus 40 ~F~~~G~V~~v~~~-----~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 40 VLEKCGLVDALLMP-----P----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 99 (345)
T ss_dssp HHHTTSCEEEEECC-----T----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSE
T ss_pred HHHhcCCeEEEEEe-----C----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecc
Confidence 48999999987664 1 5799999999999999999999999983 44 6788888543
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.72 E-value=8.3e-09 Score=73.01 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=41.9
Q ss_pred ceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 7 KIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 7 ~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
.|.++.+. +++|||||+|.+.++|..|+ .+||..+.|+.|.|.++.+..
T Consensus 41 ~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 41 PVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ 89 (172)
T ss_dssp SEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCC
T ss_pred ceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccC
Confidence 66666554 36899999999999999999 999999999999999876543
No 206
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.67 E-value=9e-09 Score=74.40 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=38.9
Q ss_pred CCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccch
Q 032211 23 GVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 23 g~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~~ 66 (145)
++++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.+...
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCC
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCC
Confidence 457999999999999999999 8999999999999999877643
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=9.4e-09 Score=67.67 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 2 Fs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
|++||.|..++++. |. +||+|.+.+.|.+||. |||..+.||.|+|++-.
T Consensus 45 F~~~G~Vilvr~v~---d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 45 LGSYGTIVLVRINQ---GQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHSCCSEEEEET---TE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHCCCEEEEEEec---Cc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 78899999999985 22 9999999999999997 99999999999998643
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=5.2e-06 Score=56.99 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEcc-HHHHHHHHHHhc--CCeeCCeeeEEEEccccchh
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYST-KEEAKLAKEKMH--GRLACGRPLVVRLASEKYLE 67 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~-~e~A~~Ai~~ln--g~~i~gr~l~V~~a~~~~~~ 67 (145)
+|++||.|..|.++. |.. .|||.|.+ ..+|..|++.+| +..|.|..+.+++.......
T Consensus 39 ~F~~~G~V~~Vd~~~---g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~GeeE~ 99 (121)
T 1owx_A 39 LFSNHGEIKWIDFVR---GAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEK 99 (121)
T ss_dssp HTCSSCCEEEEECCT---TCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHHHH
T ss_pred HHHhcCCEEEEEEec---CCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHHHH
Confidence 499999999999874 332 59999999 899999999994 78899999999887765443
No 209
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.84 E-value=0.0012 Score=45.99 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=28.4
Q ss_pred EEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCe
Q 032211 10 SEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRL 50 (145)
Q Consensus 10 ~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~ 50 (145)
.++|+.+ ..+++|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln-----~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILN-----GKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEE-----CSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEec-----CccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 3556642 33689999999999999999999887643
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0055 Score=41.20 Aligned_cols=46 Identities=13% Similarity=-0.023 Sum_probs=39.9
Q ss_pred cceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEE
Q 032211 6 GKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRL 60 (145)
Q Consensus 6 G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~ 60 (145)
|.|+.+.+.. | -+-|+|+|.+...|.+|.-.|||..|.|+.|.|.-
T Consensus 51 g~i~KI~L~p---D------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 51 KDIRKILLVS---D------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTCSEEEEET---T------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cceeEEEEec---C------CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 8888887763 2 46699999999999999999999999999999874
No 211
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.56 E-value=0.00081 Score=46.60 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=38.7
Q ss_pred CCCCccEEEEEEccHHHHHHHHHHh-cCCeeCCeeeEEEEccccch
Q 032211 22 RGVPRGFAFIEYSTKEEAKLAKEKM-HGRLACGRPLVVRLASEKYL 66 (145)
Q Consensus 22 tg~skG~~FV~f~~~e~A~~Ai~~l-ng~~i~gr~l~V~~a~~~~~ 66 (145)
....+|+++|+|.+.++|++|++.+ ||..++| .|.+.++.....
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~ 53 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFT 53 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccc
Confidence 3457899999999999999999999 9999999 999998876543
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.37 E-value=0.0033 Score=41.77 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=46.9
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccccc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKY 65 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~~ 65 (145)
||..|+++.....+. |-.-..|.|.++++|.+|-..||+..|.|+.|+|-|+.+..
T Consensus 30 Lf~~~~~~~tF~~lk---------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 30 LFRTYDKDTTFQYFK---------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHTTCSSCEEEEET---------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHhhCcCcceeecC---------cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 467888888776663 34457899999999999999999999999999999998543
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.21 E-value=0.011 Score=40.25 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=42.2
Q ss_pred CCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCC-eeeEEEEccccc
Q 032211 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACG-RPLVVRLASEKY 65 (145)
Q Consensus 2 Fs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~g-r~l~V~~a~~~~ 65 (145)
|++||.|.+.... ....+-.|.|.+..+|++|| ..||..|.| -.|-|.....+.
T Consensus 44 F~~~G~Iv~~~~~---------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 44 FAQYGNILKHVMS---------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp HHTTSCEEEEEEC---------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECCCHH
T ss_pred HHhhCcEEEeccC---------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECCCHH
Confidence 8899999886542 13579999999999999999 569999985 666777654433
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.89 E-value=0.02 Score=39.52 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=33.0
Q ss_pred ccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcccc
Q 032211 26 RGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEK 64 (145)
Q Consensus 26 kG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~~ 64 (145)
..+..|+|.+..+|.+|| ..||..|.|..|-|....+.
T Consensus 62 ~NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDAL-LENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TTEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEECCHH
T ss_pred CcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEECCHH
Confidence 468899999999999999 67999999998888876543
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.94 E-value=4.1 Score=26.72 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=34.7
Q ss_pred cceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEccc
Q 032211 6 GKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASE 63 (145)
Q Consensus 6 G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~~ 63 (145)
|.|.++... . +-|+|+|.+.+.|++.++ -..+.|.+.+|.|....+
T Consensus 38 G~V~~v~~~----------~-~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 38 GPVLSWQRL----------G-CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEEEE----------T-TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ceeeEEEEc----------C-CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 577776654 1 668999999999999883 336788999999975333
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=81.69 E-value=0.95 Score=29.61 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=27.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH 47 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln 47 (145)
||+.||.| .|+-+. ---|||.|.+++.|..|+..+.
T Consensus 25 lFs~fggv-~I~Wid----------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 25 LFSAFGNI-QISWID----------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HTTTSEEE-EEEEEE----------TTEEEEEEEEECHHHHHHHHHT
T ss_pred HHhccCCE-EEEEEc----------CCeEEEEecCHHHHHHHHHhcc
Confidence 59999943 243332 2469999999999999998764
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=81.34 E-value=1.2 Score=29.08 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=27.0
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH 47 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln 47 (145)
+|+.||.|. |+=+. ---|||.|.+++.|..|+..++
T Consensus 35 lFs~fggv~-I~Wid----------DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 35 LFSAFGNIQ-ISWID----------DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHTTTCSCC-CEEEE----------TTEEEEECSCHHHHHHHHHHHH
T ss_pred HhhccCCEE-EEEEc----------CCeEEEEecCHHHHHHHHHhcc
Confidence 589999542 44442 2469999999999999998764
No 218
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.42 E-value=4.2 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.5
Q ss_pred cEEEEEEccHHHHHHHHHHhcCCeeCCeeeEEEEcc
Q 032211 27 GFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLAS 62 (145)
Q Consensus 27 G~~FV~f~~~e~A~~Ai~~lng~~i~gr~l~V~~a~ 62 (145)
.|.||+-... .+..++..|++..+.|+.+.|+.+.
T Consensus 41 ~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 41 NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 5888888774 6778889999999999999998764
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=58.15 E-value=2.6 Score=34.74 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHH
Q 032211 2 FSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAK 43 (145)
Q Consensus 2 Fs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai 43 (145)
|++||+|.++.+- ... .-|+.|+|.+.+.+..++
T Consensus 73 ~~~~g~i~~~~~~-----~~~---g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 73 LSQFGPINNHFFY-----ESF---GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HGGGSCCCCEEEE-----CSS---SEEEEEECC---CCHHHH
T ss_pred HHhcCCcceEEEE-----ccC---CeEEEEEeCCHHHHHHHH
Confidence 6899999987553 222 269999999999888665
No 220
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=56.45 E-value=18 Score=22.79 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=29.0
Q ss_pred ccEEEEEEccHHHHHHHHHHhcCCeeCC-----eeeEEEEcc
Q 032211 26 RGFAFIEYSTKEEAKLAKEKMHGRLACG-----RPLVVRLAS 62 (145)
Q Consensus 26 kG~~FV~f~~~e~A~~Ai~~lng~~i~g-----r~l~V~~a~ 62 (145)
-.-|+|.|.+.+++..-.+.++|+.|.. .+-.|++|-
T Consensus 45 ~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 45 YARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp CEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 3678999999999999999999999843 233566664
No 221
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=45.01 E-value=15 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred CccEEEEEEccHHHHHHHHHHhcCC
Q 032211 25 PRGFAFIEYSTKEEAKLAKEKMHGR 49 (145)
Q Consensus 25 skG~~FV~f~~~e~A~~Ai~~lng~ 49 (145)
-.||.||++...++...+|+.+.|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 5899999999999988888776654
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=43.93 E-value=31 Score=22.08 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=28.3
Q ss_pred cEEEEEEccHHHHHHHHHHhcCCeeCC-----eeeEEEEcc
Q 032211 27 GFAFIEYSTKEEAKLAKEKMHGRLACG-----RPLVVRLAS 62 (145)
Q Consensus 27 G~~FV~f~~~e~A~~Ai~~lng~~i~g-----r~l~V~~a~ 62 (145)
.-|+|.|.+.++...-.+.++|+.|.+ -+-.|++|.
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 568999999999999999999999843 344566664
No 223
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.99 E-value=25 Score=21.02 Aligned_cols=11 Identities=9% Similarity=0.513 Sum_probs=9.2
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.++.|||.|++
T Consensus 36 ~~~~ClV~FeD 46 (68)
T 2e5p_A 36 AREVCLVQFED 46 (68)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 36889999986
No 224
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=30.45 E-value=32 Score=21.14 Aligned_cols=11 Identities=9% Similarity=0.513 Sum_probs=9.2
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.++.|||.|.+
T Consensus 53 ~~e~ClV~F~D 63 (79)
T 2m0o_A 53 AREVCLVQFED 63 (79)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEEEcC
Confidence 46889999986
No 225
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=28.96 E-value=34 Score=23.16 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.7
Q ss_pred CccEEEEEEccHHHHHHHHHHhcCCe
Q 032211 25 PRGFAFIEYSTKEEAKLAKEKMHGRL 50 (145)
Q Consensus 25 skG~~FV~f~~~e~A~~Ai~~lng~~ 50 (145)
-.||.||++...++...+++.+.|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 58999999999988888887776543
No 226
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=27.69 E-value=47 Score=27.34 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=27.2
Q ss_pred CCCCCcceeEEEEeeccCCCCCCCCccEEEEEEccHHHHHHHHHHhc
Q 032211 1 MFSPYGKIVSEDFLWHTRGPKRGVPRGFAFIEYSTKEEAKLAKEKMH 47 (145)
Q Consensus 1 lFs~~G~I~~~~i~~~~rd~~tg~skG~~FV~f~~~e~A~~Ai~~ln 47 (145)
+|+.||.+ +|+-+ ..-.|||.|.+.+.|..+++.++
T Consensus 459 ~fs~fg~v-~V~wi----------ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 459 LFSAFGNI-QISWI----------DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp HGGGGCCC-EEEEC----------SSSEEEEECSCHHHHHHHHHHHT
T ss_pred HHHhcCCE-EEEEE----------cCCeEEEEECCHHHHHHHHHHHH
Confidence 37788853 44443 23569999999999999999885
No 227
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=25.48 E-value=27 Score=20.99 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=9.1
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.||||||+-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 48999999765
No 228
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.45 E-value=23 Score=24.23 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=8.5
Q ss_pred CccEEEEEEc
Q 032211 25 PRGFAFIEYS 34 (145)
Q Consensus 25 skG~~FV~f~ 34 (145)
.+||+||+..
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 4899999976
No 229
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.41 E-value=65 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.7
Q ss_pred CccEEEEEEccHHHHHHHHHHhcC
Q 032211 25 PRGFAFIEYSTKEEAKLAKEKMHG 48 (145)
Q Consensus 25 skG~~FV~f~~~e~A~~Ai~~lng 48 (145)
-+||-||+=.+..+...|+..+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 589999999999999999876643
No 230
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.14 E-value=42 Score=19.99 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=9.3
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+|.|+|.|.+
T Consensus 40 ~~gtC~V~F~D 50 (66)
T 2eqj_A 40 LKQSCFIIFED 50 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 36899999986
No 231
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=24.11 E-value=30 Score=20.24 Aligned_cols=11 Identities=36% Similarity=0.766 Sum_probs=9.0
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+||+||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 48999999764
No 232
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=24.07 E-value=30 Score=20.81 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=9.1
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.||||||+-.+
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 48999999765
No 233
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=23.82 E-value=31 Score=20.05 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.8
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+|||||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 48999998764
No 234
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.52 E-value=18 Score=21.37 Aligned_cols=11 Identities=0% Similarity=0.308 Sum_probs=9.3
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+..|||.|++
T Consensus 34 ~~~~ClV~FeD 44 (63)
T 2e5q_A 34 SKQSCLVTFED 44 (63)
T ss_dssp TTSEEEEEETT
T ss_pred CCCEEEEEEcc
Confidence 47899999986
No 235
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=23.04 E-value=33 Score=20.45 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=8.8
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+|||||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T 3a0j_A 12 EKGYGFIEREG 22 (73)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEecCC
Confidence 48999998654
No 236
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.59 E-value=33 Score=21.54 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=7.3
Q ss_pred CccEEEEEE
Q 032211 25 PRGFAFIEY 33 (145)
Q Consensus 25 skG~~FV~f 33 (145)
.|||+||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 589999963
No 237
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.48 E-value=34 Score=20.76 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=9.0
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+||+||+-.+
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 58999999764
No 238
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=22.04 E-value=35 Score=19.82 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=9.0
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+|||||+-.+
T Consensus 11 ~kGfGFI~~~~ 21 (66)
T 1g6p_A 11 KKGYGFITKDE 21 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 48999999764
No 239
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=20.55 E-value=39 Score=19.95 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=9.0
Q ss_pred CccEEEEEEcc
Q 032211 25 PRGFAFIEYST 35 (145)
Q Consensus 25 skG~~FV~f~~ 35 (145)
.+|||||.-.+
T Consensus 16 ~kGfGFI~~~~ 26 (71)
T 3i2z_B 16 SKGFGFITPED 26 (71)
T ss_dssp TTTEEEEEETT
T ss_pred CCCcEEEecCC
Confidence 48999998765
Done!