Query 032214
Match_columns 145
No_of_seqs 140 out of 1098
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.9E-55 4.1E-60 305.9 15.9 145 1-145 1-146 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.7E-54 5.8E-59 294.2 13.7 140 6-145 2-141 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 9.7E-53 2.1E-57 279.4 13.9 143 2-144 1-143 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 8.5E-51 1.9E-55 285.3 17.5 141 5-145 2-142 (152)
5 PLN00172 ubiquitin conjugating 100.0 4.3E-50 9.3E-55 280.5 17.3 140 6-145 2-141 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 1E-47 2.2E-52 262.3 14.6 145 1-145 1-159 (171)
7 PF00179 UQ_con: Ubiquitin-con 100.0 7.1E-46 1.5E-50 257.7 13.7 137 9-145 1-139 (140)
8 cd00195 UBCc Ubiquitin-conjuga 100.0 3.6E-45 7.9E-50 254.4 16.5 138 8-145 2-140 (141)
9 KOG0426 Ubiquitin-protein liga 100.0 2.5E-45 5.3E-50 244.3 13.1 143 2-144 1-157 (165)
10 KOG0418 Ubiquitin-protein liga 100.0 3.9E-45 8.5E-50 256.5 13.1 140 6-145 4-147 (200)
11 KOG0421 Ubiquitin-protein liga 100.0 4.7E-45 1E-49 246.1 11.3 141 3-144 27-167 (175)
12 KOG0424 Ubiquitin-protein liga 100.0 6.5E-44 1.4E-48 240.5 14.1 143 2-144 1-150 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 5.5E-43 1.2E-47 244.5 16.2 138 8-145 1-140 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 3E-40 6.5E-45 221.7 12.7 140 5-145 2-143 (153)
15 KOG0423 Ubiquitin-protein liga 100.0 9.4E-38 2E-42 216.7 6.8 141 4-144 9-149 (223)
16 KOG0416 Ubiquitin-protein liga 100.0 7.9E-37 1.7E-41 211.5 10.6 136 7-145 5-142 (189)
17 KOG0420 Ubiquitin-protein liga 100.0 6.4E-36 1.4E-40 207.3 11.4 137 5-144 28-168 (184)
18 KOG0427 Ubiquitin conjugating 100.0 1.6E-33 3.6E-38 187.5 12.5 118 5-123 15-134 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 1.9E-32 4E-37 196.3 13.4 137 1-139 1-143 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 7.3E-26 1.6E-30 162.9 12.5 137 8-145 22-164 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 1.4E-23 2.9E-28 153.5 9.5 112 4-118 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 5E-18 1.1E-22 144.5 7.6 110 7-116 853-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 3E-16 6.5E-21 133.8 11.0 114 4-117 281-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 2.5E-15 5.5E-20 101.0 8.5 113 3-115 3-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.9 8E-09 1.7E-13 71.1 7.5 67 50-116 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 4.1E-09 8.9E-14 69.2 3.3 73 54-126 13-89 (122)
27 PF08694 UFC1: Ubiquitin-fold 98.6 4.5E-08 9.7E-13 66.8 2.7 96 7-107 26-135 (161)
28 PF05743 UEV: UEV domain; Int 98.3 2.3E-06 4.9E-11 58.0 6.0 78 34-116 32-117 (121)
29 KOG3357 Uncharacterized conser 97.8 6.4E-05 1.4E-09 50.8 5.4 95 7-107 29-138 (167)
30 KOG2391 Vacuolar sorting prote 97.6 0.0006 1.3E-08 53.2 8.9 78 41-119 55-140 (365)
31 smart00591 RWD domain in RING 96.5 0.063 1.4E-06 34.6 9.7 27 50-76 39-65 (107)
32 PF14462 Prok-E2_E: Prokaryoti 96.5 0.047 1E-06 36.9 8.9 90 23-115 12-120 (122)
33 PF05773 RWD: RWD domain; Int 96.5 0.013 2.9E-07 38.1 6.2 70 7-77 3-74 (113)
34 PF14457 Prok-E2_A: Prokaryoti 95.4 0.025 5.3E-07 40.2 4.0 60 56-115 57-125 (162)
35 PF09765 WD-3: WD-repeat regio 92.6 0.28 6.1E-06 38.1 5.0 86 6-114 100-186 (291)
36 KOG4018 Uncharacterized conser 89.2 1.7 3.8E-05 32.1 6.1 62 10-74 7-71 (215)
37 KOG0309 Conserved WD40 repeat- 88.5 2.9 6.3E-05 36.7 7.7 70 6-76 421-491 (1081)
38 PF14460 Prok-E2_D: Prokaryoti 81.2 2.3 4.9E-05 30.5 3.5 41 75-118 90-134 (175)
39 PF06113 BRE: Brain and reprod 78.8 7 0.00015 31.0 5.7 65 35-111 54-121 (333)
40 TIGR03737 PRTRC_B PRTRC system 68.5 10 0.00022 28.5 4.2 37 76-116 132-172 (228)
41 PRK11700 hypothetical protein; 65.8 49 0.0011 24.1 8.9 99 5-109 51-184 (187)
42 smart00340 HALZ homeobox assoc 61.2 7.8 0.00017 21.1 1.8 14 7-20 21-34 (44)
43 cd00421 intradiol_dioxygenase 60.7 16 0.00034 25.3 3.8 26 50-75 64-90 (146)
44 COG3140 Uncharacterized protei 60.3 13 0.00029 21.4 2.7 25 1-25 28-52 (60)
45 PF06113 BRE: Brain and reprod 59.8 23 0.00051 28.1 4.9 25 51-75 305-329 (333)
46 cd03457 intradiol_dioxygenase_ 55.7 21 0.00044 26.0 3.8 26 50-75 85-110 (188)
47 PF03366 YEATS: YEATS family; 48.8 65 0.0014 20.1 5.0 42 35-78 2-43 (84)
48 KOG0662 Cyclin-dependent kinas 48.6 21 0.00045 26.4 2.9 56 66-121 167-226 (292)
49 cd03459 3,4-PCD Protocatechuat 47.3 35 0.00075 24.0 3.8 25 51-75 72-101 (158)
50 PF14135 DUF4302: Domain of un 45.6 91 0.002 23.2 6.0 16 4-19 8-23 (235)
51 PF09943 DUF2175: Uncharacteri 37.5 35 0.00076 22.3 2.3 19 36-56 2-20 (101)
52 KOG0177 20S proteasome, regula 36.6 11 0.00023 27.5 -0.2 30 85-114 135-164 (200)
53 TIGR02423 protocat_alph protoc 36.4 59 0.0013 23.7 3.6 24 51-74 96-124 (193)
54 KOG0700 Protein phosphatase 2C 35.0 1.1E+02 0.0024 24.9 5.3 75 9-88 249-332 (390)
55 PF10346 Con-6: Conidiation pr 34.8 61 0.0013 17.0 2.6 29 104-132 4-32 (36)
56 PF04881 Adeno_GP19K: Adenovir 32.5 80 0.0017 21.6 3.5 22 30-51 43-64 (139)
57 PF13950 Epimerase_Csub: UDP-g 32.4 45 0.00098 19.5 2.1 19 96-114 37-55 (62)
58 KOG4445 Uncharacterized conser 32.2 65 0.0014 25.5 3.4 25 52-76 45-69 (368)
59 cd03463 3,4-PCD_alpha Protocat 32.0 78 0.0017 22.9 3.7 24 51-74 92-120 (185)
60 PF12065 DUF3545: Protein of u 27.7 47 0.001 19.5 1.5 13 7-19 36-48 (59)
61 cd05845 Ig2_L1-CAM_like Second 27.6 1.7E+02 0.0037 18.6 4.4 26 49-76 16-41 (95)
62 PF09280 XPC-binding: XPC-bind 27.5 87 0.0019 18.2 2.7 20 123-142 34-53 (59)
63 COG0544 Tig FKBP-type peptidyl 26.3 1.3E+02 0.0029 24.9 4.5 16 52-67 209-224 (441)
64 PF00718 Polyoma_coat: Polyoma 24.8 1.9E+02 0.0042 22.6 4.8 60 23-90 170-234 (297)
65 PRK15486 hpaC 4-hydroxyphenyla 24.4 2.6E+02 0.0057 19.8 7.2 69 10-95 6-77 (170)
66 PRK05114 hypothetical protein; 23.8 82 0.0018 18.4 2.0 21 1-21 28-48 (59)
67 PF00779 BTK: BTK motif; Inte 23.0 32 0.0007 17.5 0.2 16 77-92 2-18 (32)
68 KOG0805 Carbon-nitrogen hydrol 23.0 54 0.0012 25.3 1.5 65 25-93 198-269 (337)
69 PHA02614 Major capsid protein 22.7 2.2E+02 0.0048 22.9 4.8 49 39-90 202-252 (363)
70 KOG1047 Bifunctional leukotrie 22.6 88 0.0019 26.8 2.8 30 47-77 248-280 (613)
71 PF14455 Metal_CEHH: Predicted 21.9 3E+02 0.0065 19.5 7.2 67 6-76 6-76 (177)
72 COG3866 PelB Pectate lyase [Ca 21.5 1.9E+02 0.004 23.1 4.2 39 36-75 198-240 (345)
73 TIGR02439 catechol_proteo cate 21.4 1.5E+02 0.0032 23.1 3.7 24 51-74 180-221 (285)
74 PF03487 IL13: Interleukin-13; 20.4 58 0.0013 17.5 0.9 17 4-20 26-42 (43)
75 cd03461 1,2-HQD Hydroxyquinol 20.4 1.6E+02 0.0035 22.8 3.7 24 51-74 172-213 (277)
76 cd03464 3,4-PCD_beta Protocate 20.3 1.7E+02 0.0036 21.9 3.7 24 51-74 122-152 (220)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-55 Score=305.93 Aligned_cols=145 Identities=49% Similarity=0.932 Sum_probs=141.7
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEeeCCC-CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 1 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
|++..+.+||++|++.+++++++++++.+.++ |+++|++.|.||++||||||.|++.|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 67777999999999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 80 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 80 p~v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|||+.+|+||+++|.+.|+|++++++||.+|+++|.+||+++|+|.|||++|++|+++|.++|++|
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~ 146 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREW 146 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999976
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-54 Score=294.20 Aligned_cols=140 Identities=61% Similarity=1.028 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~ 85 (145)
+.+||++|++++++++++|+.+.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|.||+|+|.+.|+|+.+|.+||.+|+++|.+||+++|++.++|++|+.|+.+|.++||+|
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARew 141 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREW 141 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-53 Score=279.43 Aligned_cols=143 Identities=41% Similarity=0.815 Sum_probs=139.5
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
||..+.|||++|++.++++++.|++..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
||.+|.+|+|+|...|+|.|++..||.+||+||.+|++.+|+|.+||++|++|+.+|.+++++
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~ 143 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKE 143 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998874
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.5e-51 Score=285.27 Aligned_cols=141 Identities=65% Similarity=1.137 Sum_probs=138.1
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~ 84 (145)
.++|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~ 142 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREW 142 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.3e-50 Score=280.54 Aligned_cols=140 Identities=50% Similarity=0.929 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~ 85 (145)
+.+||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|.||++++.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~ 141 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREW 141 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-47 Score=262.34 Aligned_cols=145 Identities=34% Similarity=0.721 Sum_probs=138.4
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEeeCCC-CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 1 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
|++..+..-|+++|++|++++.+|+.+.+.++ |+++|.+.|+||++|.|+||.|+..+.||.+||.+||+++|.+.+||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 77778889999999999999999999998755 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCC-------------CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 80 p~v~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
||||++|.+|+++|. +.|.|..++++||++|.+||.+||.++|+|-|||+.|++++++|.+++++|
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~ 159 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRC 159 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHH
Confidence 999999999999993 479999999999999999999999999999999999999999999998764
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=7.1e-46 Score=257.68 Aligned_cols=137 Identities=53% Similarity=0.986 Sum_probs=128.6
Q ss_pred HHHHHHHHHhhCCCCCeEEeeCCC-CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCCc
Q 032214 9 RIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (145)
Q Consensus 9 RL~~E~~~l~~~~~~g~~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G~ 87 (145)
||++|+++++++++.|+.+.+.++ |++.|+++|.||++|||+||.|+++|.||++||++||.|+|.++++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC-CCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 88 ICLDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 88 icl~~l~~-~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|++++.. .|+|++++.+||.+|+++|.+|++++++|.+|+++|++|+++|.++|++|
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~ 139 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREW 139 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHc
Confidence 99999975 59999999999999999999999999999999999999999999999987
No 8
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.6e-45 Score=254.43 Aligned_cols=138 Identities=51% Similarity=0.958 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCCc
Q 032214 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (145)
Q Consensus 8 kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G~ 87 (145)
|||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.+.++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCC-CCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 88 ICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 88 icl~~l~~~-W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
||++++... |+|++++++||.+|+++|.+|+.++++|.+|+++|++|+++|.++|++|
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~ 140 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREW 140 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHh
Confidence 999999876 9999999999999999999999999999999999999999999999987
No 9
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-45 Score=244.28 Aligned_cols=143 Identities=36% Similarity=0.741 Sum_probs=136.5
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeC-CCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp 80 (145)
++..++|||++||++|..++++||.+.|. +||+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|.-.+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 45678999999999999999999999885 78999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCC-------------CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 81 NIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 81 ~v~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
|||++|++|+++|. +.|+|..+++.||.++-+||.+||.++.+|.+|+.++++|+++|.+.|+.
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~ 157 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKR 157 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHH
Confidence 99999999999993 57999999999999999999999999999999999999999999998863
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-45 Score=256.54 Aligned_cols=140 Identities=43% Similarity=0.838 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHhhCC---CCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 6 LPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~---~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
+.+|+++|++++.+++ ..||.+...++++.+..+.|.||+|||||||+|.+.|++|++||++||+|+|.|.||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 7899999999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~-~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
.+ +|.||+|++.+.|++++|+.++|.+||++|..|++.+|.+...|++|.++++.|.++|+-|
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~W 147 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYW 147 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHH
Confidence 96 8999999999999999999999999999999999999999999999999999999999987
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-45 Score=246.09 Aligned_cols=141 Identities=43% Similarity=0.759 Sum_probs=136.9
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
++.+.|||++|+..|.....+||++.|.+||++.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|.++.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
+..|.||+|+|.+.|+..|.+++||++||++|-+||.++|+|..||+++. |.++|++...+
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~ 167 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEA 167 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999987654
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-44 Score=240.48 Aligned_cols=143 Identities=33% Similarity=0.632 Sum_probs=136.0
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCC-----CCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
+|+.++.||++|-+.+.++.+-|+++.|.. .|++.|.|.|.|+++|+||||.|.+++.||++||.+||+++|..+
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 467789999999999999999999999863 378999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeccCCCCC--CCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 77 IYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 77 i~hp~v~~~G~icl~~l~~~--W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
+||||||++|.|||++|.+. |+|+.+|.+||.+||.||.+||+.+|+|.||...|.+|+.+|.+++|.
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~ 150 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRA 150 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHH
Confidence 99999999999999999764 999999999999999999999999999999999999999999998874
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=5.5e-43 Score=244.48 Aligned_cols=138 Identities=52% Similarity=0.981 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCC-CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC
Q 032214 8 RRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 86 (145)
Q Consensus 8 kRL~~E~~~l~~~~~~g~~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G 86 (145)
+||++|++++++++++|+++.+.++ |++.|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 6999999999999999999998775 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCC-CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 87 RICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 87 ~icl~~l~-~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
.+|++++. ++|+|++++++||.+|+++|.+|++++++|.+|+++|++++++|.++|++|
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~ 140 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREW 140 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 99999998 899999999999999999999999999999999999999999999999875
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-40 Score=221.71 Aligned_cols=140 Identities=34% Similarity=0.713 Sum_probs=131.9
Q ss_pred chHHHHHHHHHHHhhCCCCCeE-EeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 032214 5 NLPRRIVKETQRLLSEPAPGIS-ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~-v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~ 83 (145)
.+.+||++|+..|++++...+. +...+++++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|.||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4689999999999998877554 5567889999999999 8999999999999999999999999999999999999999
Q ss_pred CCCceeccCC-CCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 84 KLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 84 ~~G~icl~~l-~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.|++|+.++ .++|.|+..+++||+.|.+++.+|++++|++.|+|.+|.+|+.+|.++|.+|
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~ 143 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEF 143 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHH
Confidence 9999999999 5899999999999999999999999999999999999999999999999875
No 15
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-38 Score=216.71 Aligned_cols=141 Identities=37% Similarity=0.680 Sum_probs=137.8
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~ 83 (145)
+.++|.|.+|++.+...|+.||.|.+.++|+....+.|.||.||||++|.|+..+.+..+||.+||+-.|.|+||||||.
T Consensus 9 p~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 9 PNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred hHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
.+|.||.+.|..+|+|..+|.+||..|+++|..|+|++++|.+|++++.++.++|.+.||-
T Consensus 89 aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl 149 (223)
T KOG0423|consen 89 ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARL 149 (223)
T ss_pred cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999873
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-37 Score=211.49 Aligned_cols=136 Identities=38% Similarity=0.759 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC-C
Q 032214 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK-L 85 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~-~ 85 (145)
.||+..|..+|... +..|...++++.++++.+.||.+|||+||++++++.+|++||++.|.|.|+++||||||+. +
T Consensus 5 ~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~S 81 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEAS 81 (189)
T ss_pred ccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhcc
Confidence 58999999988874 4578888999999999999999999999999999999999999999999999999999996 9
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 86 GRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i-~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|.||++.++..|+|.+.+..|+..+ -.+|..||+.+|+|.+||.+|.+++++|.+++++|
T Consensus 82 GsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY 142 (189)
T KOG0416|consen 82 GSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEY 142 (189)
T ss_pred CccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999765 57999999999999999999999999999999875
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-36 Score=207.34 Aligned_cols=137 Identities=34% Similarity=0.674 Sum_probs=119.4
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEee--CCCCCc--eeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccc
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASP--AEDNMR--YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~--~~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp 80 (145)
+++-||++|..++ +.++++++.. ..++.. ++.++|. |+++.|.||.|+|.+.+|+.||+.||+|++.+++|||
T Consensus 28 ~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HP 104 (184)
T KOG0420|consen 28 AALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHP 104 (184)
T ss_pred HHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccC
Confidence 4445666665554 4455655322 234444 4899998 9999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 81 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 81 ~v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
||+.+|.||+++|+++|+|+.++.+|+.+|+.+|.+|++++|+|.+||+.+++|++.|...+|.
T Consensus 105 NId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~ 168 (184)
T KOG0420|consen 105 NIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRR 168 (184)
T ss_pred CcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998875
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=187.47 Aligned_cols=118 Identities=34% Similarity=0.654 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccc-cccccc
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNID 83 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i-~hp~v~ 83 (145)
.+.+||+||+.+++.+++.|+... ..||+.+|.+.+.|.+||.|+|.+|.+.+.||+.||++.|.|.|+.++ .||+||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 578999999999999999999998 678899999999999999999999999999999999999999999887 799999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCCcc
Q 032214 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSA-PNPDDPL 123 (145)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~-~~~~~~~ 123 (145)
+||.||+++|.+.|+|++++.+|.++|.+||++ .....|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 999999999999999999999999999999986 4444454
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=196.30 Aligned_cols=137 Identities=26% Similarity=0.540 Sum_probs=116.3
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccc
Q 032214 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp 80 (145)
||+..+.|||+|||+.|.++|.++|.+.|.++|+++||.+|.||++|||+||.|+.+|.||.+||++||-|++.|+ +.
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NG 78 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NG 78 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987 33
Q ss_pred cccCCCceeccCC---CCCCCCcCCHHHHHHHHHHHhcC--CCCCCcccHHH-HHHHHHCHHHHH
Q 032214 81 NIDKLGRICLDIL---KDKWSPALQIRTVLLSIQALLSA--PNPDDPLSDNI-AKHWKADETEAV 139 (145)
Q Consensus 81 ~v~~~G~icl~~l---~~~W~p~~~i~~il~~i~~~l~~--~~~~~~~n~~a-~~~~~~~~~~f~ 139 (145)
.+-.+.++|+++. .+.|+|++++.+||.+|.++|.+ |...+....+. .+.|..+..+|.
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhc
Confidence 3444679999877 58999999999999999999875 44444433332 235555555553
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.3e-26 Score=162.95 Aligned_cols=137 Identities=23% Similarity=0.374 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCC--CCCeEEEecccccccccC-
Q 032214 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM--SAPKVRFLTKIYHPNIDK- 84 (145)
Q Consensus 8 kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~--~pP~v~f~~~i~hp~v~~- 84 (145)
..|+.|+..+.+.+.+||+|.|+-.+-+.|.++|++ ..+.|.||+|+|+|.+|++||. .-|+|.|.++++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 468889999999999999999999999999999995 6778999999999999999995 479999999999999997
Q ss_pred CCceeccCCCCCCCCcC-CHHHHHHHHHHHhcCCCCCCc--ccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 LGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP--LSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 ~G~icl~~l~~~W~p~~-~i~~il~~i~~~l~~~~~~~~--~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
++.+|+......|.... +|+++|..||..|.+|+.+.+ .|.+|+.+|++++++|+++++++
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~ 164 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQEC 164 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHH
Confidence 89999988877798665 799999999999999998866 49999999999999999999864
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-23 Score=153.53 Aligned_cols=112 Identities=33% Similarity=0.678 Sum_probs=99.3
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~ 83 (145)
..+.|||++|.++++ +|...+...+.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+- ..+-
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Ccee
Confidence 357899999999998 7778888999999999999999999999999999999999999999999999998873 3344
Q ss_pred CCCceeccCC---CCCCCCcCCHHHHHHHHHHHhcC-CC
Q 032214 84 KLGRICLDIL---KDKWSPALQIRTVLLSIQALLSA-PN 118 (145)
Q Consensus 84 ~~G~icl~~l---~~~W~p~~~i~~il~~i~~~l~~-~~ 118 (145)
-+.+||+++. .+.|.|+++|.+.|..|..+|-+ |+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 4679999887 58899999999999999998843 44
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5e-18 Score=144.54 Aligned_cols=110 Identities=32% Similarity=0.639 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc--cccccccC
Q 032214 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK--IYHPNIDK 84 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~--i~hp~v~~ 84 (145)
.+..+.|++-+..+.+.||+|...++.+....+.|.||.+|||.+|.|.|.|.||++||..||.|...+. .++||.|.
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 4556667777788889999999999999999999999999999999999999999999999999999865 58999999
Q ss_pred CCceeccCCC-------CCCCCcCCHHHHHHHHHHHhcC
Q 032214 85 LGRICLDILK-------DKWSPALQIRTVLLSIQALLSA 116 (145)
Q Consensus 85 ~G~icl~~l~-------~~W~p~~~i~~il~~i~~~l~~ 116 (145)
+|++|+++|. +-|+|+-++.++|.+||.++-.
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 9999999995 5699999999999999998654
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3e-16 Score=133.83 Aligned_cols=114 Identities=33% Similarity=0.699 Sum_probs=106.2
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc---cccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK---IYHP 80 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~---i~hp 80 (145)
....+|+++|++-+.++.+.|+.+.+.+..+....+.|.||.+|||++|+|.|.|.||..||..||.|.+.+. .+.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999976 5899
Q ss_pred cccCCCceeccCCC-------CCCCCc-CCHHHHHHHHHHHhcCC
Q 032214 81 NIDKLGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAP 117 (145)
Q Consensus 81 ~v~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~~l~~~ 117 (145)
|.|.+|+||+++|- +.|+|. -++.++|.+|+.++...
T Consensus 361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999999982 579999 78999999999988654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.5e-15 Score=100.95 Aligned_cols=113 Identities=22% Similarity=0.338 Sum_probs=93.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCC--C--CceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAED--N--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~--~--~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~ 78 (145)
-...--||.+|+.+-++...+|...+..+| | +..|...|.||+.|+||+-+|.++|.+..+||..||+|+|.+.+-
T Consensus 3 ~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin 82 (138)
T KOG0896|consen 3 KVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN 82 (138)
T ss_pred ccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee
Confidence 344556899999888777777766655433 3 458999999999999999999999999999999999999999998
Q ss_pred cccccC-CCceeccCC--CCCCCCcCCHHHHHHHHHHHhc
Q 032214 79 HPNIDK-LGRICLDIL--KDKWSPALQIRTVLLSIQALLS 115 (145)
Q Consensus 79 hp~v~~-~G~icl~~l--~~~W~p~~~i~~il~~i~~~l~ 115 (145)
-..|+. +|.+.-..+ -.+|.-.++++.+|.+++..+.
T Consensus 83 m~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 83 MNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 888885 777775333 3689999999999999986553
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.90 E-value=8e-09 Score=71.06 Aligned_cols=67 Identities=31% Similarity=0.658 Sum_probs=60.7
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEeccc---ccccccCCCceec---cCCCCCCCCcCCHHHHHHHHHHHhcC
Q 032214 50 EGGVFKLELFLPEDYPMSAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 116 (145)
Q Consensus 50 ~gg~f~~~i~f~~~YP~~pP~v~f~~~i---~hp~v~~~G~icl---~~l~~~W~p~~~i~~il~~i~~~l~~ 116 (145)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ +...+.|.|.-.+.++|.+...+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6899999999999 77778999999999999999998873
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.1e-09 Score=69.21 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=57.5
Q ss_pred EEEEEeCCCCCCCCCCeEEEeccccc-ccccCCCceeccCC-CCCCCCcCCHHHHHHHHHHHhcCCC--CCCcccHH
Q 032214 54 FKLELFLPEDYPMSAPKVRFLTKIYH-PNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPN--PDDPLSDN 126 (145)
Q Consensus 54 f~~~i~f~~~YP~~pP~v~f~~~i~h-p~v~~~G~icl~~l-~~~W~p~~~i~~il~~i~~~l~~~~--~~~~~n~~ 126 (145)
.-+.+.|++|||+.||.++...++-. .-|-.+|.||+.++ .++|+.+++++.++++|-+++-.-. ...+++.+
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~ 89 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKS 89 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchh
Confidence 55778999999999999998877643 33446899999999 5789999999999999999887543 33444443
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.56 E-value=4.5e-08 Score=66.85 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhh-------CCCCCeEEeeCCCCCceeEEEEECCCCCCCCC--CEEEEEEeCCCCCCCCCCeEEEeccc
Q 032214 7 PRRIVKETQRLLS-------EPAPGISASPAEDNMRYFNVMILGPSQSPYEG--GVFKLELFLPEDYPMSAPKVRFLTKI 77 (145)
Q Consensus 7 ~kRL~~E~~~l~~-------~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~g--g~f~~~i~f~~~YP~~pP~v~f~~~i 77 (145)
..||.+||+.|-+ +....+.+. ++.+-+.|.+...= .++- -.|.+++.+|..||..||.+....--
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 5899999998754 122334444 34444555543220 0111 24667777899999999999886543
Q ss_pred -ccccccCCCceeccCCCC----CCCCcCCHHHHH
Q 032214 78 -YHPNIDKLGRICLDILKD----KWSPALQIRTVL 107 (145)
Q Consensus 78 -~hp~v~~~G~icl~~l~~----~W~p~~~i~~il 107 (145)
-..-.|.+|+||++..+. .-.|.++|.+.+
T Consensus 101 GKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 456788999999988852 346888887765
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.29 E-value=2.3e-06 Score=57.99 Aligned_cols=78 Identities=27% Similarity=0.541 Sum_probs=52.6
Q ss_pred CceeEEEEECCCCCCCCCCEEE--EEEeCCCCCCCCCCeEEEeccc-----ccccccCCCceeccCCCCCCCC-cCCHHH
Q 032214 34 MRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIRT 105 (145)
Q Consensus 34 ~~~w~~~i~Gp~~tpy~gg~f~--~~i~f~~~YP~~pP~v~f~~~i-----~hp~v~~~G~icl~~l~~~W~p-~~~i~~ 105 (145)
+....++|. -.|.|..|. +.|-+|.+||.+||.+...... -+.+|+.+|++.+..+. +|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHHH
Confidence 334444443 358887775 5566899999999999886332 24499999999988886 7876 778999
Q ss_pred HHHHHHHHhcC
Q 032214 106 VLLSIQALLSA 116 (145)
Q Consensus 106 il~~i~~~l~~ 116 (145)
++..+...|..
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99998887754
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=6.4e-05 Score=50.82 Aligned_cols=95 Identities=21% Similarity=0.348 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCC----------EEEEEEeCCCCCCCCCCeEEEecc
Q 032214 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
.+||.+||+.|-. ++.-..++-..|.-.-..++||-|-|. .|.+++.+|-.||...|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5899999998865 122222222334333344667777663 366677789999999999976532
Q ss_pred c-ccccccCCCceeccCCC-CCC---CCcCCHHHHH
Q 032214 77 I-YHPNIDKLGRICLDILK-DKW---SPALQIRTVL 107 (145)
Q Consensus 77 i-~hp~v~~~G~icl~~l~-~~W---~p~~~i~~il 107 (145)
- -.-..|.+|+||+.-.+ .-| .|.++|.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 2 23466788999986654 346 4667776543
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0006 Score=53.16 Aligned_cols=78 Identities=23% Similarity=0.516 Sum_probs=60.7
Q ss_pred EECCCCCCCCCCEEEEEE--eCCCCCCCCCCeEEEecc-----cccccccCCCceeccCCCCCCC-CcCCHHHHHHHHHH
Q 032214 41 ILGPSQSPYEGGVFKLEL--FLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDILKDKWS-PALQIRTVLLSIQA 112 (145)
Q Consensus 41 i~Gp~~tpy~gg~f~~~i--~f~~~YP~~pP~v~f~~~-----i~hp~v~~~G~icl~~l~~~W~-p~~~i~~il~~i~~ 112 (145)
+.|---.+|.|.+|.+=| =+.+.||..||.+..... -.|-+|+.+|.|.+..|. +|. |+..+..++..+.+
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a 133 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIA 133 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHH
Confidence 334344678888887655 479999999999976522 148999999999999998 676 66789999999999
Q ss_pred HhcCCCC
Q 032214 113 LLSAPNP 119 (145)
Q Consensus 113 ~l~~~~~ 119 (145)
.|.++.+
T Consensus 134 ~f~~~pP 140 (365)
T KOG2391|consen 134 AFSEDPP 140 (365)
T ss_pred HhcCCCc
Confidence 9887553
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.54 E-value=0.063 Score=34.62 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=22.7
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 50 EGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 50 ~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
..-.+.+.+.+|.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988764
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.49 E-value=0.047 Score=36.92 Aligned_cols=90 Identities=17% Similarity=0.340 Sum_probs=59.8
Q ss_pred CCeEEeeCCCCCceeEEEEEC--CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCCce--ec--------
Q 032214 23 PGISASPAEDNMRYFNVMILG--PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI--CL-------- 90 (145)
Q Consensus 23 ~g~~v~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G~i--cl-------- 90 (145)
.|+..+...+.-..|.+ |.| .+.+.|....-.+-|.+|..||..+|...+..+-.... .+|.+ |-
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 35666665555556655 544 66777999999999999999999988776665432111 11222 22
Q ss_pred ------cCCCCCCCCcC-CHHHHHHHHHHHhc
Q 032214 91 ------DILKDKWSPAL-QIRTVLLSIQALLS 115 (145)
Q Consensus 91 ------~~l~~~W~p~~-~i~~il~~i~~~l~ 115 (145)
+-....|.|.. ++.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 22234688887 69999988887764
No 33
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.46 E-value=0.013 Score=38.15 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEE--CCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccc
Q 032214 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMIL--GPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~--Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i 77 (145)
..+...|+..|+.-=+... ......+...+.+.+. ....+.-....+.+.+.||++||..+|.|...+..
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3467778888776322222 2223344445666662 12334445568999999999999999999877643
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.43 E-value=0.025 Score=40.22 Aligned_cols=60 Identities=27% Similarity=0.433 Sum_probs=47.6
Q ss_pred EEEeCCCCCCCCCCeEEEecccc---cccccCC-----CceeccCCC-CCCCCcCCHHHHHHHHHHHhc
Q 032214 56 LELFLPEDYPMSAPKVRFLTKIY---HPNIDKL-----GRICLDILK-DKWSPALQIRTVLLSIQALLS 115 (145)
Q Consensus 56 ~~i~f~~~YP~~pP~v~f~~~i~---hp~v~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~~l~ 115 (145)
+.|.|+.+||..+|.|.+.-..| +||++.. ..+|+---. ..|.+..+++.+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 56899999999999877765443 5777765 779985543 569999999999999998774
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.56 E-value=0.28 Score=38.11 Aligned_cols=86 Identities=22% Similarity=0.389 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~ 85 (145)
..++|.+|+.++..+.. +.+ -.++++....+.+.. +.-.+.++|.++.+||.++|.+...-++
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i-~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQI-QFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEE-EE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHHhccccc--eEE-ecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 45678888888876532 222 136778888888872 2256889999999999999976433221
Q ss_pred CceeccCCCCCCCC-cCCHHHHHHHHHHHh
Q 032214 86 GRICLDILKDKWSP-ALQIRTVLLSIQALL 114 (145)
Q Consensus 86 G~icl~~l~~~W~p-~~~i~~il~~i~~~l 114 (145)
.+...|.+ ..++.+++.+.+..+
T Consensus 163 ------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 ------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred ------chhhhhcccccCHHHHHHHHHHHH
Confidence 11225777 567777766655544
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.24 E-value=1.7 Score=32.10 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCCe-EEeeCCCCCceeEEEEECCCCCCCCC--CEEEEEEeCCCCCCCCCCeEEEe
Q 032214 10 IVKETQRLLSEPAPGI-SASPAEDNMRYFNVMILGPSQSPYEG--GVFKLELFLPEDYPMSAPKVRFL 74 (145)
Q Consensus 10 L~~E~~~l~~~~~~g~-~v~~~~~~~~~w~~~i~Gp~~tpy~g--g~f~~~i~f~~~YP~~pP~v~f~ 74 (145)
..+|+..|..--+.-+ .+. +.+...+.+.|. ...+-++. +.+.+.+.++++||..+|.+.+.
T Consensus 7 Qe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHIN--SEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhhhhh--ccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcceecc
Confidence 4456666655322222 222 223333556665 22221211 27889999999999999999543
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.50 E-value=2.9 Score=36.68 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCC-CCeEEEecc
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS-APKVRFLTK 76 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~-pP~v~f~~~ 76 (145)
..+-|.+|+..|-.. .+.+.++-.+-.-..-.+.+-||-.---.....++.|.||.+||.+ +|.++|..+
T Consensus 421 ~pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 445667777666543 2334444333344566777777654442223357889999999996 799999754
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=81.25 E-value=2.3 Score=30.49 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=24.8
Q ss_pred ccccc---ccccCCCceeccCCCCCCCCcCCHHHHHHHHHH-HhcCCC
Q 032214 75 TKIYH---PNIDKLGRICLDILKDKWSPALQIRTVLLSIQA-LLSAPN 118 (145)
Q Consensus 75 ~~i~h---p~v~~~G~icl~~l~~~W~p~~~i~~il~~i~~-~l~~~~ 118 (145)
|++|| +||+.+|+||+.... .|.......+..+.. +|.++.
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~f 134 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPF 134 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCc
Confidence 45566 499999999987643 233433444566654 444443
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=78.83 E-value=7 Score=30.97 Aligned_cols=65 Identities=25% Similarity=0.530 Sum_probs=44.2
Q ss_pred ceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe-cccccccccCCCceeccCCCCCCCCcC--CHHHHHHHHH
Q 032214 35 RYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPAL--QIRTVLLSIQ 111 (145)
Q Consensus 35 ~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~-~~i~hp~v~~~G~icl~~l~~~W~p~~--~i~~il~~i~ 111 (145)
..+.+.| ||.|...+-+|.|...||..||-+.|. ..-|+|-... +..+ .+|.+.- ++..++..|.
T Consensus 54 DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 54 DRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISELR 121 (333)
T ss_pred ceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHHH
Confidence 3555555 599999999999999999999999996 3347884321 1222 3687664 4555554444
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=68.52 E-value=10 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=24.0
Q ss_pred cccc---ccccCCCceeccCCCCCCCCcC-CHHHHHHHHHHHhcC
Q 032214 76 KIYH---PNIDKLGRICLDILKDKWSPAL-QIRTVLLSIQALLSA 116 (145)
Q Consensus 76 ~i~h---p~v~~~G~icl~~l~~~W~p~~-~i~~il~~i~~~l~~ 116 (145)
++|| +||+.+|+||+.... .|.. ++.+ +......|..
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 4566 399999999987654 3433 4555 6666665543
No 41
>PRK11700 hypothetical protein; Provisional
Probab=65.84 E-value=49 Score=24.09 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHh----hCCCCC--eEEeeCCC--CCceeEEEEE---CCCCCCCC-CCEEEEEEeCCC----------
Q 032214 5 NLPRRIVKETQRLL----SEPAPG--ISASPAED--NMRYFNVMIL---GPSQSPYE-GGVFKLELFLPE---------- 62 (145)
Q Consensus 5 ~~~kRL~~E~~~l~----~~~~~g--~~v~~~~~--~~~~w~~~i~---Gp~~tpy~-gg~f~~~i~f~~---------- 62 (145)
.+.+|..+.+.+.- .+...| |++.-.+. ....|.+.+. =|.+.-|- -|+=++++.+|.
T Consensus 51 ~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~ 130 (187)
T PRK11700 51 ETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARAL 130 (187)
T ss_pred HHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHH
Confidence 34566666665432 333444 33332222 3446766553 13222222 266788888773
Q ss_pred ----CCCCCCCeEEEe--cc------ccccccc-CCCceeccCCCCCCCCcCCHHHHHHH
Q 032214 63 ----DYPMSAPKVRFL--TK------IYHPNID-KLGRICLDILKDKWSPALQIRTVLLS 109 (145)
Q Consensus 63 ----~YP~~pP~v~f~--~~------i~hp~v~-~~G~icl~~l~~~W~p~~~i~~il~~ 109 (145)
+.|..++-|++. +| .-+|-|. ++|.+|+.... ++++.|+.+
T Consensus 131 all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 131 ALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred HhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEcC------ccHHHHHHh
Confidence 344555555554 33 4678777 58999998876 678777654
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=61.21 E-value=7.8 Score=21.11 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhC
Q 032214 7 PRRIVKETQRLLSE 20 (145)
Q Consensus 7 ~kRL~~E~~~l~~~ 20 (145)
-|||++|+++|+..
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999864
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=60.69 E-value=16 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=22.8
Q ss_pred CCCEEEEEEeCCCCCC-CCCCeEEEec
Q 032214 50 EGGVFKLELFLPEDYP-MSAPKVRFLT 75 (145)
Q Consensus 50 ~gg~f~~~i~f~~~YP-~~pP~v~f~~ 75 (145)
+.|.|.|.-.+|..|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3488999999999999 9999998863
No 44
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.29 E-value=13 Score=21.44 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCe
Q 032214 1 MASGNLPRRIVKETQRLLSEPAPGI 25 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~~~~g~ 25 (145)
|+|+.++.-+.+|+++.+++...+.
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~ 52 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIV 52 (60)
T ss_pred ccchhHHHHHHHHHHHHhccccccc
Confidence 7899999999999999888765443
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=59.81 E-value=23 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.8
Q ss_pred CCEEEEEEeCCCCCCCCCCeEEEec
Q 032214 51 GGVFKLELFLPEDYPMSAPKVRFLT 75 (145)
Q Consensus 51 gg~f~~~i~f~~~YP~~pP~v~f~~ 75 (145)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3357788999999999999999987
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=55.74 E-value=21 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEec
Q 032214 50 EGGVFKLELFLPEDYPMSAPKVRFLT 75 (145)
Q Consensus 50 ~gg~f~~~i~f~~~YP~~pP~v~f~~ 75 (145)
+.|.|+|+=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 34889999999999999999998863
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=48.79 E-value=65 Score=20.12 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=28.7
Q ss_pred ceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccc
Q 032214 35 RYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (145)
Q Consensus 35 ~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~ 78 (145)
..|.+.+.|+.+.....-+=++++.+.+.|+. |...+..+-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999888765556677788999999885 6666665533
No 48
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=48.65 E-value=21 Score=26.39 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=43.5
Q ss_pred CCCCeEEEecccccccccC--CCceeccCCCCCC--CCcCCHHHHHHHHHHHhcCCCCCC
Q 032214 66 MSAPKVRFLTKIYHPNIDK--LGRICLDILKDKW--SPALQIRTVLLSIQALLSAPNPDD 121 (145)
Q Consensus 66 ~~pP~v~f~~~i~hp~v~~--~G~icl~~l~~~W--~p~~~i~~il~~i~~~l~~~~~~~ 121 (145)
..||.|-|-.+.|...|+- -|.|--++...+| .|+-.+.+-|..|..++-.|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 3689999999999999993 5666556666666 588888888888888888877553
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=47.27 E-value=35 Score=24.04 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.1
Q ss_pred CCEEEEEEeCCCCCC-----CCCCeEEEec
Q 032214 51 GGVFKLELFLPEDYP-----MSAPKVRFLT 75 (145)
Q Consensus 51 gg~f~~~i~f~~~YP-----~~pP~v~f~~ 75 (145)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998864
No 50
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=45.61 E-value=91 Score=23.23 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHhh
Q 032214 4 GNLPRRIVKETQRLLS 19 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~ 19 (145)
..+..||.+.++++++
T Consensus 8 ~s~~eR~~e~~~~~k~ 23 (235)
T PF14135_consen 8 KSPAERINEALAEYKK 23 (235)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3567888887777665
No 51
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=37.52 E-value=35 Score=22.30 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=16.6
Q ss_pred eeEEEEECCCCCCCCCCEEEE
Q 032214 36 YFNVMILGPSQSPYEGGVFKL 56 (145)
Q Consensus 36 ~w~~~i~Gp~~tpy~gg~f~~ 56 (145)
.|.|.|.| +..|+|..|.|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 69999997 67899999887
No 52
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=11 Score=27.54 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHHh
Q 032214 85 LGRICLDILKDKWSPALQIRTVLLSIQALL 114 (145)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~~l 114 (145)
.+..|++++...|+|.+|++.-+.-++..+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 467999999999999999887766655544
No 53
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=36.37 E-value=59 Score=23.74 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=20.7
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeEEEe
Q 032214 51 GGVFKLELFLPEDYPM-----SAPKVRFL 74 (145)
Q Consensus 51 gg~f~~~i~f~~~YP~-----~pP~v~f~ 74 (145)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999998 88888775
No 54
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=34.97 E-value=1.1e+02 Score=24.90 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEE---------EEEeCCCCCCCCCCeEEEeccccc
Q 032214 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFK---------LELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 9 RL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~---------~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
.+..|.++|+...|..-.+..... -...+.|+ +.--+..+.++ +. .|...|+..||.++....+.|
T Consensus 249 ~ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~--vsRAfGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~~ 323 (390)
T KOG0700|consen 249 SNEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQ--VSRAFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSITH 323 (390)
T ss_pred ccHHHHHHHHHhCCCCcceEeecc--ceeeEEEE--eeeeccceeecchhhccchhHh-hcCCCCCCCCCceeccceEEE
Confidence 356778888877665544433333 12233444 22234444443 11 688899999999999998887
Q ss_pred ccccCCCce
Q 032214 80 PNIDKLGRI 88 (145)
Q Consensus 80 p~v~~~G~i 88 (145)
-.+.++.++
T Consensus 324 HrL~p~DkF 332 (390)
T KOG0700|consen 324 HKLTPNDKF 332 (390)
T ss_pred EEcCCCCeE
Confidence 777776554
No 55
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=34.79 E-value=61 Score=17.01 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032214 104 RTVLLSIQALLSAPNPDDPLSDNIAKHWK 132 (145)
Q Consensus 104 ~~il~~i~~~l~~~~~~~~~n~~a~~~~~ 132 (145)
..|+.++++.|.+|+.++-....|.+.+.
T Consensus 4 ~~V~~G~KAal~NPnvSeeaK~~A~~~Le 32 (36)
T PF10346_consen 4 NNVAGGYKAALHNPNVSEEAKQHAREKLE 32 (36)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Confidence 45788999999999987766666665544
No 56
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=32.47 E-value=80 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=17.3
Q ss_pred CCCCCceeEEEEECCCCCCCCC
Q 032214 30 AEDNMRYFNVMILGPSQSPYEG 51 (145)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~tpy~g 51 (145)
.+.|...|.+++.|++|++...
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~ 64 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKS 64 (139)
T ss_pred cCCCCcceEEEEECCCCcceec
Confidence 3667788999999999887653
No 57
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=32.35 E-value=45 Score=19.48 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=12.2
Q ss_pred CCCCcCCHHHHHHHHHHHh
Q 032214 96 KWSPALQIRTVLLSIQALL 114 (145)
Q Consensus 96 ~W~p~~~i~~il~~i~~~l 114 (145)
+|.|.++|++++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 8999999999998776543
No 58
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=32.17 E-value=65 Score=25.46 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.8
Q ss_pred CEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 52 GVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 52 g~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3577888999999999999998876
No 59
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.95 E-value=78 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.9
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeEEEe
Q 032214 51 GGVFKLELFLPEDYPM-----SAPKVRFL 74 (145)
Q Consensus 51 gg~f~~~i~f~~~YP~-----~pP~v~f~ 74 (145)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999995 78877664
No 60
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=27.71 E-value=47 Score=19.48 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhh
Q 032214 7 PRRIVKETQRLLS 19 (145)
Q Consensus 7 ~kRL~~E~~~l~~ 19 (145)
.+||++||+++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4688888888754
No 61
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=27.61 E-value=1.7e+02 Score=18.63 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 49 YEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 49 y~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888889999 588888755
No 62
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=27.49 E-value=87 Score=18.22 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHCHHHHHHHh
Q 032214 123 LSDNIAKHWKADETEAVETG 142 (145)
Q Consensus 123 ~n~~a~~~~~~~~~~f~~~a 142 (145)
-|++.+++.++|+++|.+..
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll 53 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLL 53 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHH
Confidence 78999999999999998754
No 63
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=26.26 E-value=1.3e+02 Score=24.85 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.7
Q ss_pred CEEEEEEeCCCCCCCC
Q 032214 52 GVFKLELFLPEDYPMS 67 (145)
Q Consensus 52 g~f~~~i~f~~~YP~~ 67 (145)
-...+.++||.+|+..
T Consensus 209 e~k~i~vtFP~dy~a~ 224 (441)
T COG0544 209 EEKDIKVTFPEDYHAE 224 (441)
T ss_pred CeeEEEEEcccccchh
Confidence 3455889999999975
No 64
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=24.81 E-value=1.9e+02 Score=22.56 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=34.8
Q ss_pred CCeEEeeCCCCCc---eeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC--ceec
Q 032214 23 PGISASPAEDNMR---YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (145)
Q Consensus 23 ~g~~v~~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G--~icl 90 (145)
+..++.+..|..+ .| .|+-+--|+..|..++.=... .||.+.|....-.+..|++| -+|.
T Consensus 170 ~~~Kakldkdg~yPVE~W-----~PDPskNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 234 (297)
T PF00718_consen 170 PTAKAKLDKDGAYPVECW-----CPDPSKNENTRYFGSYTGGAN---TPPVLQFTNTVTTVLLDENGVGPLCK 234 (297)
T ss_dssp TTGEEEESSTTTSBTTTE-----EE-TTSSTTEEEEEEEE-SSS------EEEEESSEEEE---TTS--EEEC
T ss_pred cchheeeccCCCcceEEE-----CCCCCcCcCceeeEeecCCCC---CCCeEEeccceeEEEEccCCcccccc
Confidence 4455555544332 34 356666777778777776655 78999999988889999875 4774
No 65
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=24.37 E-value=2.6e+02 Score=19.78 Aligned_cols=69 Identities=9% Similarity=0.172 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe---cccccccccCCC
Q 032214 10 IVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL---TKIYHPNIDKLG 86 (145)
Q Consensus 10 L~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~---~~i~hp~v~~~G 86 (145)
+..++++....-..|++|.-..++-.. ++... .-...+. ..||.|-+. +..-|+.+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~~~~-~G~Tv----------ss~~SvS------ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGDAGR-CGITA----------TAVCSVT------DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecCCCc-EEEEE----------EEEEEeE------cCCCEEEEEECCCCchhHHHHhCC
Confidence 456788888888889987754322111 11111 0111222 369999886 335788999999
Q ss_pred ceeccCCCC
Q 032214 87 RICLDILKD 95 (145)
Q Consensus 87 ~icl~~l~~ 95 (145)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999963
No 66
>PRK05114 hypothetical protein; Provisional
Probab=23.78 E-value=82 Score=18.39 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=16.9
Q ss_pred CCCCchHHHHHHHHHHHhhCC
Q 032214 1 MASGNLPRRIVKETQRLLSEP 21 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~~ 21 (145)
|+|+.+++-+.+|+++-.+..
T Consensus 28 mSsgEAI~~VA~eiRe~~~~~ 48 (59)
T PRK05114 28 MSSGEAIALVAEELRANHQGE 48 (59)
T ss_pred ccHHHHHHHHHHHHHHHHhcc
Confidence 688889999999998866643
No 67
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=23.02 E-value=32 Score=17.50 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=9.2
Q ss_pred cccccccCCCc-eeccC
Q 032214 77 IYHPNIDKLGR-ICLDI 92 (145)
Q Consensus 77 i~hp~v~~~G~-icl~~ 92 (145)
.|||.+..+|+ .|...
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 48999998776 66533
No 68
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=23.00 E-value=54 Score=25.27 Aligned_cols=65 Identities=23% Similarity=0.395 Sum_probs=41.2
Q ss_pred eEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEE-e--CCCCCCCCCCeEEEeccc----ccccccCCCceeccCC
Q 032214 25 ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLEL-F--LPEDYPMSAPKVRFLTKI----YHPNIDKLGRICLDIL 93 (145)
Q Consensus 25 ~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i-~--f~~~YP~~pP~v~f~~~i----~hp~v~~~G~icl~~l 93 (145)
|+..|.-|+-..|..++. .--+|||.|.+.. . =..+|| .+|.+-|.... --+++..+|.+-++-+
T Consensus 198 IycAPT~D~r~~w~~sM~---~IAlEG~cFvlSA~QF~k~~d~p-~~peyl~~~~~~~k~pD~vv~~GGSviI~Pl 269 (337)
T KOG0805|consen 198 IYCAPTADGRKEWQSSML---HIALEGGCFVLSACQFCKRKDFP-DHPDYLFTDWYDDKEPDSVVSQGGSVIISPL 269 (337)
T ss_pred EEeccCCCCcHHHHHhhh---heeecCceEEEEhhhhcccccCC-CCchhhcccchhccCCCcceecCCcEEEccc
Confidence 344556677778987765 5669999999874 3 368888 46666665321 1234445566655555
No 69
>PHA02614 Major capsid protein VP1; Provisional
Probab=22.74 E-value=2.2e+02 Score=22.89 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=35.6
Q ss_pred EEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC--ceec
Q 032214 39 VMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (145)
Q Consensus 39 ~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G--~icl 90 (145)
+.+..|+-+--|+..|..++.=..+ .||.+.|....-.+.+|+|| -+|.
T Consensus 202 VE~W~PDPskNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 252 (363)
T PHA02614 202 VECWCPDPSKNENTRYFGTYTGGAN---TPPVLQFTNTSTTVLLDENGVGPLCK 252 (363)
T ss_pred eEeECCCCCcCcCceeeEeecCCCC---CCCeEEecCcceEEEEcCCCcccCcc
Confidence 3444566666677777777666554 78999999988889999874 4773
No 70
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.61 E-value=88 Score=26.85 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEEeCCCCCCCC---CCeEEEeccc
Q 032214 47 SPYEGGVFKLELFLPEDYPMS---APKVRFLTKI 77 (145)
Q Consensus 47 tpy~gg~f~~~i~f~~~YP~~---pP~v~f~~~i 77 (145)
+||.=|.|.+ +.+|++||+. -|-++|.|+-
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecch
Confidence 5777788877 5579999985 4999999873
No 71
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=21.90 E-value=3e+02 Score=19.54 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhhCC----CCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 6 LPRRIVKETQRLLSEP----APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~----~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
+.+.+-+|...+.... -.|+.+. +.+.=...+++..|+-.|-.= ..+++|.| .||-..||.|.|+.+
T Consensus 6 SrakFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~~~-~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 6 SRAKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPRSI-GLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred hHHHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcccc-ceEEEEec-cccCcCCCceEEecc
Confidence 3445566776666533 2566654 333334555555566666322 25666666 689999999999977
No 72
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.53 E-value=1.9e+02 Score=23.06 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=27.6
Q ss_pred eeEEEEECCCCC-CCCCCEEEEEEe---CCCCCCCCCCeEEEec
Q 032214 36 YFNVMILGPSQS-PYEGGVFKLELF---LPEDYPMSAPKVRFLT 75 (145)
Q Consensus 36 ~w~~~i~Gp~~t-py~gg~f~~~i~---f~~~YP~~pP~v~f~~ 75 (145)
+|...|.|-.++ -|++|.+++++. |..- -.+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEeeE
Confidence 578889985554 888999998876 3333 34567999864
No 73
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=21.44 E-value=1.5e+02 Score=23.14 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.4
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 032214 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (145)
Q Consensus 51 gg~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (145)
.|.|.|+=..|.-|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 488999999999997 578888876
No 74
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=20.42 E-value=58 Score=17.52 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHhhC
Q 032214 4 GNLPRRIVKETQRLLSE 20 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~ 20 (145)
..+.|.|.+|+-.|-++
T Consensus 26 ~~alkELIeELvNITqn 42 (43)
T PF03487_consen 26 STALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhhccC
Confidence 35789999999888765
No 75
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=20.37 E-value=1.6e+02 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.713 Sum_probs=20.5
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 032214 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (145)
Q Consensus 51 gg~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (145)
.|.|.|+=..|.-|| ..||.|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 488999999999998 478888875
No 76
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.33 E-value=1.7e+02 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.610 Sum_probs=20.5
Q ss_pred CCEEEEEEeCCCCCCC-------CCCeEEEe
Q 032214 51 GGVFKLELFLPEDYPM-------SAPKVRFL 74 (145)
Q Consensus 51 gg~f~~~i~f~~~YP~-------~pP~v~f~ 74 (145)
.|.|.|.=..|.-||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 78998875
Done!