Query 032214
Match_columns 145
No_of_seqs 140 out of 1098
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 2.4E-52 8.1E-57 292.5 17.4 144 2-145 1-144 (151)
2 2c2v_B Ubiquitin-conjugating e 100.0 1.7E-52 6E-57 294.0 14.7 144 2-145 2-145 (154)
3 1ayz_A UBC2, ubiquitin-conjuga 100.0 6.8E-52 2.3E-56 294.7 16.9 143 3-145 2-144 (169)
4 2ayv_A Ubiquitin-conjugating e 100.0 1.8E-51 6E-56 291.8 18.3 143 3-145 19-161 (166)
5 1zdn_A Ubiquitin-conjugating e 100.0 5.1E-52 1.7E-56 292.8 15.3 144 2-145 10-153 (158)
6 1z2u_A Ubiquitin-conjugating e 100.0 1.2E-51 4.2E-56 288.7 16.9 144 2-145 1-144 (150)
7 2aak_A UBC1, ubiquitin conjuga 100.0 1.3E-51 4.4E-56 289.1 17.0 143 3-145 2-144 (152)
8 2ucz_A UBC7, ubiquitin conjuga 100.0 1.1E-51 3.8E-56 293.0 16.1 144 1-145 1-158 (165)
9 3h8k_A Ubiquitin-conjugating e 100.0 3.5E-51 1.2E-55 290.2 18.0 143 3-145 1-157 (164)
10 2e2c_A Ubiquitin conjugating e 100.0 2.6E-51 9E-56 288.6 16.9 143 2-145 6-148 (156)
11 2c4o_A Ubiquitin-conjugating e 100.0 3.8E-51 1.3E-55 290.0 17.5 142 4-145 18-159 (165)
12 2r0j_A Ubiquitin carrier prote 100.0 1.8E-51 6E-56 287.5 15.6 140 6-145 2-141 (149)
13 1yh2_A HSPC150 protein similar 100.0 5.9E-51 2E-55 290.1 17.6 143 3-145 2-148 (169)
14 1jat_A Ubiquitin-conjugating e 100.0 2.3E-51 7.8E-56 288.7 14.5 143 3-145 3-145 (155)
15 2bep_A Ubiquitin-conjugating e 100.0 1.1E-50 3.9E-55 286.2 17.0 144 2-145 5-152 (159)
16 1fxt_A Ubiquitin-conjugating e 100.0 2.9E-51 1E-55 286.5 13.8 140 6-145 2-143 (149)
17 3rcz_B SUMO-conjugating enzyme 100.0 7.9E-51 2.7E-55 287.7 16.1 144 2-145 7-157 (163)
18 2awf_A Ubiquitin-conjugating e 100.0 1.2E-50 4.1E-55 289.1 15.8 144 2-145 14-172 (172)
19 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.4E-50 8.1E-55 291.8 16.6 143 3-145 30-186 (193)
20 3rz3_A Ubiquitin-conjugating e 100.0 3.2E-50 1.1E-54 289.5 16.4 145 1-145 3-167 (183)
21 1i7k_A Ubiquitin-conjugating e 100.0 2.1E-50 7E-55 289.1 14.9 143 2-145 27-169 (179)
22 3k9o_A Ubiquitin-conjugating e 100.0 6.1E-50 2.1E-54 292.0 17.5 143 3-145 3-149 (201)
23 2gjd_A Ubiquitin-conjugating e 100.0 3.7E-50 1.3E-54 283.0 15.7 143 3-145 2-151 (157)
24 3bzh_A Ubiquitin-conjugating e 100.0 1.1E-49 3.8E-54 288.6 18.0 141 5-145 48-188 (194)
25 2pwq_A Ubiquitin conjugating e 100.0 3.4E-50 1.2E-54 295.3 15.4 143 3-145 21-164 (216)
26 2grr_A Ubiquitin-conjugating e 100.0 6.2E-50 2.1E-54 282.9 15.2 144 2-145 4-154 (161)
27 1wzv_A Ubiquitin-conjugating e 100.0 1.3E-49 4.4E-54 279.8 16.1 142 3-145 2-145 (155)
28 1yrv_A Ubiquitin-conjugating l 100.0 6.3E-50 2.1E-54 284.5 14.0 141 3-144 21-164 (169)
29 3e46_A Ubiquitin-conjugating e 100.0 1.1E-48 3.8E-53 293.0 16.9 143 3-145 55-201 (253)
30 1y8x_A Ubiquitin-conjugating e 100.0 1.4E-48 4.7E-53 275.6 15.7 139 4-145 5-144 (160)
31 1tte_A Ubiquitin-conjugating e 100.0 3.1E-49 1.1E-53 290.0 12.1 141 5-145 2-144 (215)
32 3fn1_B NEDD8-conjugating enzym 100.0 2.9E-48 9.8E-53 275.9 16.2 141 4-145 13-161 (167)
33 2y9m_A Ubiquitin-conjugating e 100.0 2.9E-48 9.9E-53 276.9 15.7 144 2-145 3-162 (172)
34 2nvu_C NEDD8-conjugating enzym 100.0 3E-48 1E-52 278.4 15.4 140 3-145 24-164 (180)
35 2onu_A Ubiquitin-conjugating e 100.0 1.1E-48 3.6E-53 274.1 9.8 138 5-145 2-141 (152)
36 2z5d_A Ubiquitin-conjugating e 100.0 2.7E-48 9.1E-53 277.9 11.0 137 5-145 25-163 (179)
37 1c4z_D UBCH7, ubiquitin conjug 100.0 3.2E-48 1.1E-52 272.4 10.8 140 5-145 2-143 (154)
38 3o2u_A NEDD8-conjugating enzym 100.0 3.3E-47 1.1E-51 275.0 15.3 140 3-145 27-173 (190)
39 1yf9_A Ubiquitin carrier prote 100.0 5.9E-47 2E-51 269.6 12.2 137 5-145 12-150 (171)
40 4ds2_A Ubiquitin-conjugating e 100.0 1.5E-46 5.1E-51 267.0 13.9 142 3-144 6-164 (167)
41 4ddg_A Ubiquitin-conjugating e 100.0 2.1E-46 7.1E-51 297.4 16.1 141 5-145 3-143 (399)
42 2q0v_A Ubiquitin-conjugating e 100.0 2.2E-44 7.4E-49 252.9 10.6 132 2-134 18-156 (156)
43 2fo3_A Ubiquitin-conjugating e 100.0 4.3E-43 1.5E-47 238.4 14.1 117 5-121 6-123 (125)
44 1jat_B Ubiquitin-conjugating e 100.0 2.2E-44 7.4E-49 248.6 7.5 130 1-131 2-138 (138)
45 2h2y_A Ubiquitin-conjugating e 100.0 2.6E-42 8.9E-47 237.6 15.8 116 4-119 19-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 2.1E-42 7.2E-47 243.4 12.8 125 4-128 24-156 (160)
47 3ceg_A Baculoviral IAP repeat- 100.0 2.9E-42 1E-46 264.9 12.3 144 2-145 73-237 (323)
48 2a7l_A Hypothetical ubiquitin- 100.0 1.3E-41 4.4E-46 233.9 13.4 109 7-115 24-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 8.4E-42 2.9E-46 242.7 10.3 125 4-128 34-166 (170)
50 2f4w_A Ubiquitin-conjugating e 100.0 2.5E-39 8.7E-44 233.2 15.9 136 3-140 12-153 (187)
51 1zuo_A Hypothetical protein LO 100.0 1.2E-39 4.1E-44 234.7 5.5 120 2-121 24-160 (186)
52 2z6o_A UFM1-conjugating enzyme 100.0 4.1E-30 1.4E-34 179.0 1.9 114 7-134 34-162 (172)
53 3r3q_A Suppressor protein STP2 99.8 1.9E-20 6.7E-25 131.2 10.0 114 7-121 30-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 2.4E-21 8.2E-26 132.1 -0.2 96 6-107 35-145 (168)
55 3obq_A Tumor susceptibility ge 99.6 7.8E-15 2.7E-19 101.1 7.0 81 30-116 49-138 (146)
56 2ebm_A RWD domain-containing p 97.3 0.0075 2.6E-07 39.8 11.6 68 6-75 11-78 (128)
57 2daw_A RWD domain containing p 96.7 0.019 6.7E-07 39.2 9.5 23 53-75 76-98 (154)
58 2day_A Ring finger protein 25; 96.5 0.023 7.9E-07 37.4 8.8 72 5-76 8-83 (128)
59 2yz0_A Serine/threonine-protei 96.2 0.062 2.1E-06 35.7 9.5 68 7-76 12-86 (138)
60 3zqs_A E3 ubiquitin-protein li 96.2 0.069 2.4E-06 37.7 9.9 84 8-115 4-87 (186)
61 2ebk_A RWD domain-containing p 95.0 0.14 4.9E-06 33.5 7.6 68 6-74 8-78 (128)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 94.2 0.48 1.6E-05 31.2 8.8 70 5-75 10-86 (137)
63 2dax_A Protein C21ORF6; RWD do 92.3 0.35 1.2E-05 32.7 5.8 24 53-76 74-97 (152)
64 2cwb_A Chimera of immunoglobul 91.2 0.039 1.3E-06 35.6 0.0 32 114-145 18-49 (108)
65 3u3c_B Paxillin LD2 peptide; 4 71.8 3 0.0001 18.9 2.0 20 6-25 6-25 (26)
66 3rls_A YAF9, protein AF-9 homo 36.0 99 0.0034 21.3 5.7 43 32-76 30-72 (175)
67 3s7v_A Major capsid protein VP 34.5 94 0.0032 22.8 5.5 45 43-90 193-239 (277)
68 2bum_A Protocatechuate 3,4-dio 33.4 42 0.0014 23.7 3.6 25 50-74 109-138 (209)
69 3qrl_A Transcription initiatio 31.3 1.1E+02 0.0039 20.2 5.6 43 34-78 32-77 (140)
70 2f4m_B UV excision repair prot 29.9 46 0.0016 18.7 2.7 20 123-142 37-56 (61)
71 1sid_A Polyomavirus coat prote 28.2 1.2E+02 0.004 23.4 5.3 44 44-90 229-274 (383)
72 1vps_A Polyomavirus VP1 pentam 27.9 1.6E+02 0.0053 21.8 5.8 44 44-90 198-243 (289)
73 3iys_A Major capsid protein VP 27.8 1.1E+02 0.0036 23.3 4.9 47 40-89 197-245 (343)
74 3kxt_A Chromatin protein CREN7 27.4 83 0.0028 17.3 3.6 11 56-66 46-56 (56)
75 1pve_A HHR23B, UV excision rep 24.9 65 0.0022 18.8 2.8 20 123-142 39-58 (72)
76 3g9r_A Fusion complex of HIV-1 24.1 53 0.0018 16.8 1.9 14 6-19 29-42 (42)
77 3nxg_A Major capsid protein VP 22.9 1.3E+02 0.0044 22.1 4.5 45 43-90 184-230 (272)
78 3pft_A Flavin reductase; desul 22.9 47 0.0016 22.0 2.2 67 12-95 5-74 (157)
79 1u9d_A Hypothetical protein VC 22.8 1.4E+02 0.0048 19.2 4.3 28 6-33 32-59 (122)
80 4fmh_A VP1; viral capsid prote 21.7 1.4E+02 0.0048 22.1 4.6 61 22-90 182-247 (289)
81 2ccv_A Helix pomatia agglutini 21.4 1.5E+02 0.0051 18.1 4.2 24 52-76 29-52 (101)
82 1m46_B IQ4, IQ4 motif from MYO 21.4 56 0.0019 14.6 1.5 12 6-17 9-20 (26)
83 2rf4_B DNA-directed RNA polyme 21.2 41 0.0014 20.4 1.4 12 6-17 63-74 (87)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=2.4e-52 Score=292.53 Aligned_cols=144 Identities=46% Similarity=0.851 Sum_probs=140.1
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
++..+.|||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 sa~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 80 (151)
T 4gpr_A 1 SAAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN 80 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~ 144 (151)
T 4gpr_A 81 INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREW 144 (151)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred ECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-52 Score=294.03 Aligned_cols=144 Identities=74% Similarity=1.293 Sum_probs=138.5
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
+|..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 82 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~ 145 (154)
T 2c2v_B 82 VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 145 (154)
T ss_dssp BCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987
No 3
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=6.8e-52 Score=294.73 Aligned_cols=143 Identities=38% Similarity=0.786 Sum_probs=139.3
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
|..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI 81 (169)
T 1ayz_A 2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81 (169)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 82 ~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~ 144 (169)
T 1ayz_A 82 YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKET 144 (169)
T ss_dssp CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 4
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-51 Score=291.83 Aligned_cols=143 Identities=50% Similarity=0.869 Sum_probs=139.6
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
+..+.+||++|+++|++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 98 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98 (166)
T ss_dssp CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 99 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~ 161 (166)
T 2ayv_A 99 NSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREW 161 (166)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 5
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.1e-52 Score=292.76 Aligned_cols=144 Identities=37% Similarity=0.712 Sum_probs=140.1
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
+|..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 89 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN 89 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 90 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~ 153 (158)
T 1zdn_A 90 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLL 153 (158)
T ss_dssp BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987
No 6
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.2e-51 Score=288.68 Aligned_cols=144 Identities=48% Similarity=0.837 Sum_probs=140.4
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
.|..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 ~s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (150)
T 1z2u_A 1 GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~ 144 (150)
T 1z2u_A 81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREW 144 (150)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 7
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.3e-51 Score=289.13 Aligned_cols=143 Identities=38% Similarity=0.802 Sum_probs=139.3
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
|..+.+||++|++++++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (152)
T 2aak_A 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81 (152)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.+|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~ 144 (152)
T 2aak_A 82 YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDV 144 (152)
T ss_dssp CTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 8
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-51 Score=292.98 Aligned_cols=144 Identities=35% Similarity=0.721 Sum_probs=137.9
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEeeCC-CCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 1 MASGNLPRRIVKETQRLLSEPAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
|++ .+.+||++|+++|++++++|+++.+.+ +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 1 M~~-~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (165)
T 2ucz_A 1 MSK-TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH 79 (165)
T ss_dssp -CH-HHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred CCh-HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence 554 788999999999999999999999875 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCC-------------CCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 80 PNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 80 p~v~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|||+.+|.||+++| .++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~ 158 (165)
T 2ucz_A 80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLS 158 (165)
T ss_dssp TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999999999 6789999999999999999999999999999999999999999999999986
No 9
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=3.5e-51 Score=290.17 Aligned_cols=143 Identities=34% Similarity=0.706 Sum_probs=138.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCC-CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
++.+.|||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 356899999999999999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCC-------------CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~ 157 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQI 157 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999996 789999999999999999999999999999999999999999999999986
No 10
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-51 Score=288.62 Aligned_cols=143 Identities=38% Similarity=0.714 Sum_probs=138.8
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
++..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 85 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN 85 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++| +|+++|.++|++|
T Consensus 86 v~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~ 148 (156)
T 2e2c_A 86 VDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEK 148 (156)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHH
T ss_pred CccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 8999999999986
No 11
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=3.8e-51 Score=289.96 Aligned_cols=142 Identities=48% Similarity=0.851 Sum_probs=138.9
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~ 83 (145)
+.+.+||++|++++++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~ 159 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 159 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 12
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.8e-51 Score=287.53 Aligned_cols=140 Identities=69% Similarity=1.191 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~ 85 (145)
+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~ 141 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQW 141 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHH
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986
No 13
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.9e-51 Score=290.12 Aligned_cols=143 Identities=48% Similarity=0.871 Sum_probs=139.7
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
|..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCC----CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~~G~icl~~l~----~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.+|.||++++. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~ 148 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQW 148 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999998 899999999999999999999999999999999999999999999999986
No 14
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=2.3e-51 Score=288.66 Aligned_cols=143 Identities=65% Similarity=1.208 Sum_probs=139.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
+..+.+||++|+++|++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 ~~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (155)
T 1jat_A 3 AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82 (155)
T ss_dssp CCSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~ 145 (155)
T 1jat_A 83 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREW 145 (155)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHH
T ss_pred CCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 15
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.1e-50 Score=286.21 Aligned_cols=144 Identities=42% Similarity=0.766 Sum_probs=138.3
Q ss_pred CCCchHHHHHHHHHHHhhC---CCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccc
Q 032214 2 ASGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~---~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~ 78 (145)
||..+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 4556889999999999985 5789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 79 HPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 79 hp~v~~-~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
||||+. +|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~ 152 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLW 152 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 999995 9999999999999999999999999999999999999999999999999999999999987
No 16
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.9e-51 Score=286.45 Aligned_cols=140 Identities=39% Similarity=0.791 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCC-CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~ 84 (145)
+.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 579999999999999999999999877 9999999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 -LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~ 143 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALW 143 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHH
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 17
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=7.9e-51 Score=287.71 Aligned_cols=144 Identities=32% Similarity=0.621 Sum_probs=137.7
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCC-----CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
.|..+.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3678999999999999999999999999765 89999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeccCCCC--CCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 77 IYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 77 i~hp~v~~~G~icl~~l~~--~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|
T Consensus 87 i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~ 157 (163)
T 3rcz_B 87 LFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ 157 (163)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999975 49999999999999999999999999999999999999999999999986
No 18
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.2e-50 Score=289.12 Aligned_cols=144 Identities=34% Similarity=0.721 Sum_probs=111.2
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCC-CCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp 80 (145)
++..+.|||++|+++|++++++|+++.+.+ +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP 93 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP 93 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence 356889999999999999999999999875 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCC-------------CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHH-HHHHHhhcC
Q 032214 81 NIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET-EAVETGNSY 145 (145)
Q Consensus 81 ~v~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~-~f~~~a~~~ 145 (145)
||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|++ +|.++||+|
T Consensus 94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 99999999999996 689999999999999999999999999999999999999999 999999987
No 19
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-50 Score=291.78 Aligned_cols=143 Identities=43% Similarity=0.762 Sum_probs=134.9
Q ss_pred CCchHHHHHHHHHHHhhCCC-------------CCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCC
Q 032214 3 SGNLPRRIVKETQRLLSEPA-------------PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 69 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~-------------~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP 69 (145)
+..+.|||++|+++|+++++ .|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 45678999999999999876 79999999999999999999999999999999999999999999999
Q ss_pred eEEEeccccccccc-CCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 70 KVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 70 ~v~f~~~i~hp~v~-~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|+|.|++|||||+ .+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 110 ~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~ 186 (193)
T 2f4z_A 110 KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW 186 (193)
T ss_dssp EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred eEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999999999 59999999999999999999999999999999999999999999999999999999999987
No 20
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=3.2e-50 Score=289.54 Aligned_cols=145 Identities=35% Similarity=0.678 Sum_probs=137.1
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEe-eCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 1 MASGNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~~~~g~~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
|++..+.|||++|+++|++++++|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 8889999999999999999999999999 678899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCC-------------CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH------CHHHHHH
Q 032214 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKA------DETEAVE 140 (145)
Q Consensus 80 p~v~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~------~~~~f~~ 140 (145)
|||+.+|.||+++|. ++|+|+++|++||.+|+++|.+||+++|+|.||+++|++ ++++|.+
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~ 162 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTD 162 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHH
Confidence 999999999999996 789999999999999999999999999999999999999 7889999
Q ss_pred HhhcC
Q 032214 141 TGNSY 145 (145)
Q Consensus 141 ~a~~~ 145 (145)
+++++
T Consensus 163 ~v~~~ 167 (183)
T 3rz3_A 163 IIRKQ 167 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
No 21
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-50 Score=289.14 Aligned_cols=143 Identities=42% Similarity=0.671 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
++..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++| +|+++|.++|++|
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~ 169 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQET 169 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHH
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999864
No 22
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6.1e-50 Score=291.98 Aligned_cols=143 Identities=43% Similarity=0.773 Sum_probs=137.3
Q ss_pred CCchHHHHHHHHHHHhhC---CCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 3 SGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~---~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
|..+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 82 (201)
T 3k9o_A 3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 82 (201)
T ss_dssp -CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCccc
Confidence 456789999999999987 36899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 80 PNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 80 p~v~~-~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 83 Pnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~ 149 (201)
T 3k9o_A 83 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLW 149 (201)
T ss_dssp TTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 99995 9999999999999999999999999999999999999999999999999999999999987
No 23
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.7e-50 Score=283.02 Aligned_cols=143 Identities=28% Similarity=0.585 Sum_probs=136.7
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCC-----CCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i 77 (145)
|..+.+||++|++++++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 2 s~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 81 (157)
T 2gjd_A 2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGF 81 (157)
T ss_dssp -CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTC
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCC
Confidence 35678999999999999999999998864 4899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeccCCCC--CCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 78 YHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 78 ~hp~v~~~G~icl~~l~~--~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 82 ~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~ 151 (157)
T 2gjd_A 82 YHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQ 151 (157)
T ss_dssp CCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred ccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999976 79999999999999999999999999999999999999999999999986
No 24
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.1e-49 Score=288.61 Aligned_cols=141 Identities=46% Similarity=0.778 Sum_probs=138.3
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~ 84 (145)
.+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.+++|||||+.
T Consensus 48 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 127 (194)
T 3bzh_A 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127 (194)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 128 ~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~ 188 (194)
T 3bzh_A 128 QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQW 188 (194)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 25
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3.4e-50 Score=295.33 Aligned_cols=143 Identities=45% Similarity=0.792 Sum_probs=139.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
+..+.+||++|+++|++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 D-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~-~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~ 164 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVW 164 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 9 58999999999899999999999999999999999999999999999999999999999987
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=6.2e-50 Score=282.89 Aligned_cols=144 Identities=32% Similarity=0.618 Sum_probs=137.3
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEeeCC-----CCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g~~v~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
|+..+.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 455678999999999999999999998853 689999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeccCCCC--CCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 77 IYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 77 i~hp~v~~~G~icl~~l~~--~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~ 154 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQ 154 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999975 89999999999999999999999999999999999999999999999986
No 27
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.3e-49 Score=279.77 Aligned_cols=142 Identities=32% Similarity=0.645 Sum_probs=136.1
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEE-eeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISA-SPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
|..+.+||++|++++++++++|+++ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (155)
T 1wzv_A 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN 80 (155)
T ss_dssp ---CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCc
Confidence 4457899999999999999999999 788999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCceeccCC-CCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l-~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++| .++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 81 V~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~ 145 (155)
T 1wzv_A 81 VDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEF 145 (155)
T ss_dssp BCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8999999999999999999999999999999999999999999999999986
No 28
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.3e-50 Score=284.51 Aligned_cols=141 Identities=28% Similarity=0.513 Sum_probs=135.7
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
+..+.+||++|+++|++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 21 ~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 100 (169)
T 1yrv_A 21 HGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNV 100 (169)
T ss_dssp GCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCceeccCCC--CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 83 -DKLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 83 -~~~G~icl~~l~--~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++ ++
T Consensus 101 ~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~ 164 (169)
T 1yrv_A 101 DPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LR 164 (169)
T ss_dssp CTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HH
T ss_pred cCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HH
Confidence 789999999998 89999999999999999999999999999999999999999999988 54
No 29
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.1e-48 Score=292.96 Aligned_cols=143 Identities=43% Similarity=0.773 Sum_probs=137.8
Q ss_pred CCchHHHHHHHHHHHhhC---CCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 3 SGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~---~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
+..+.+||++||++|+++ ++.|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 55 s~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 134 (253)
T 3e46_A 55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 134 (253)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCcc
Confidence 446789999999999987 46899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 80 PNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 80 p~v~~-~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 135 PNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~ 201 (253)
T 3e46_A 135 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLW 201 (253)
T ss_dssp TTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHH
Confidence 99995 9999999999999999999999999999999999999999999999999999999999987
No 30
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-48 Score=275.63 Aligned_cols=139 Identities=30% Similarity=0.583 Sum_probs=133.4
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEe-eCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g~~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
..+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 45789999999999 567899998 7889999999988 9999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~ 144 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRS 144 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 31
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=3.1e-49 Score=290.05 Aligned_cols=141 Identities=38% Similarity=0.787 Sum_probs=136.1
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCC-CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~ 83 (145)
.+.+||++|++++++++++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4679999999999999999999999876 466999999999999999999999999999999999999999999999999
Q ss_pred C-CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 84 K-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 84 ~-~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~ 144 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALW 144 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999999999999999999999999999999987
No 32
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.9e-48 Score=275.92 Aligned_cols=141 Identities=30% Similarity=0.587 Sum_probs=134.6
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEeeC-CCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g~~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
..+.|||++|+++|++++++|+++.+. +++++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 467899999999999999999999864 67899999998 8999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCC------CCCCcCCHHHHHHHHHHHhcC-CCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 83 DKLGRICLDILKD------KWSPALQIRTVLLSIQALLSA-PNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 83 ~~~G~icl~~l~~------~W~p~~~i~~il~~i~~~l~~-~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+.+|.||+++|.. +|+|+++|++||.+|+++|.+ |++++|+|.+|+++|++|+++|.++|++|
T Consensus 92 ~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~ 161 (167)
T 3fn1_B 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDY 161 (167)
T ss_dssp CTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999975 799999999999999999999 69999999999999999999999999986
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2.9e-48 Score=276.89 Aligned_cols=144 Identities=31% Similarity=0.565 Sum_probs=134.0
Q ss_pred CCCchHHHHHHHHHHHhh-C-C------CC---CeEEee-CCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCC
Q 032214 2 ASGNLPRRIVKETQRLLS-E-P------AP---GISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 69 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~-~-~------~~---g~~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP 69 (145)
||..+.+||++|+++|++ . + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 456788999999999998 4 3 33 466777 7889999999999999999999999999999999999999
Q ss_pred eEEEec-cccccccc-CCCceeccCCC-CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-CHHHHHHHhhcC
Q 032214 70 KVRFLT-KIYHPNID-KLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKA-DETEAVETGNSY 145 (145)
Q Consensus 70 ~v~f~~-~i~hp~v~-~~G~icl~~l~-~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~-~~~~f~~~a~~~ 145 (145)
+|+|.| ++|||||+ .+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++ |+++|.++|++|
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~ 162 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 162 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 99999996 79999999998 899999999999999999999999999999999999999 999999999986
No 34
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3e-48 Score=278.39 Aligned_cols=140 Identities=29% Similarity=0.555 Sum_probs=134.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEe-eCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~ 81 (145)
+..+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 456789999999999 577899998 7889999999988 999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~ 164 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRS 164 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975
No 35
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-48 Score=274.10 Aligned_cols=138 Identities=32% Similarity=0.677 Sum_probs=131.5
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~ 84 (145)
.+.|||++|++++++. |+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 4679999999999873 7889999999999999999999999999999999999999999999999999999999995
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 -LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~-i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|.||++++.++|+|++++++||.+ |++||.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~ 141 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEY 141 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999899999999999999 689999999999999999999999999999999976
No 36
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=277.94 Aligned_cols=137 Identities=32% Similarity=0.671 Sum_probs=131.3
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~ 84 (145)
.+.|||++|+++|++ +|+++.+. +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~ 100 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence 478999999999985 57888887 67899999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 -LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~-i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|.||+++|.++|+|+++|++||.+ |+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~ 163 (179)
T 2z5d_A 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEY 163 (179)
T ss_dssp TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999899999999999999 999999999999999999999999999999999986
No 37
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3.2e-48 Score=272.36 Aligned_cols=140 Identities=31% Similarity=0.714 Sum_probs=132.7
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEee-CCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~ 83 (145)
.+.+||++|+++|++++++|+++.+ .++|++.|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 3568999999999999999998654 6789999999998 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCCC-CCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 84 KLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 84 ~~G~icl~~l~-~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
.+|.||+++|. ++|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~ 143 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEF 143 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHH
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999996 899999999999999999999999999999999999999999999999986
No 38
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.3e-47 Score=275.05 Aligned_cols=140 Identities=32% Similarity=0.593 Sum_probs=134.4
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEe----eCCCCCc---eeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISAS----PAEDNMR---YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~----~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~ 75 (145)
+..+.+||++|+++|+ +++|+++. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|
T Consensus 27 ~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 103 (190)
T 3o2u_A 27 LSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK 103 (190)
T ss_dssp CCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred ccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence 3567899999999998 67899998 8899999 9999997 88899999999999999999999999999999
Q ss_pred ccccccccCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 76 KIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 76 ~i~hp~v~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
++|||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|
T Consensus 104 ~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~ 173 (190)
T 3o2u_A 104 KIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLT 173 (190)
T ss_dssp CCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=5.9e-47 Score=269.64 Aligned_cols=137 Identities=32% Similarity=0.596 Sum_probs=128.9
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~ 84 (145)
.+.+||++|+++|++++. ++ ..++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 568999999999999874 43 35789999999999999999999999999999999999999999999999999995
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 -LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~i-~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|.||+++|.++|+|+++|++||.+| +++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~ 150 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREH 150 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999999999999999999997 79999999999999999999999999999999976
No 40
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.5e-46 Score=267.01 Aligned_cols=142 Identities=23% Similarity=0.436 Sum_probs=132.8
Q ss_pred CCchHHHHHHHHHHHhhCC------------CCCeEEeeCCCCCceeEEEEECCCCCCCC--CCEEEEEEeCCCCCCCCC
Q 032214 3 SGNLPRRIVKETQRLLSEP------------APGISASPAEDNMRYFNVMILGPSQSPYE--GGVFKLELFLPEDYPMSA 68 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~------------~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~f~~~YP~~p 68 (145)
|..+.|||++|+++|++++ +.|+++.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++|
T Consensus 6 s~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~p 85 (167)
T 4ds2_A 6 KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEP 85 (167)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSC
T ss_pred cHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCC
Confidence 4467899999999999976 67999999999999999999999999999 999999999999999999
Q ss_pred CeEEEecccccccccCCCceeccCCCCCCCCcCCHHHHHH-HHHHHhcC--CCCCCcccHHHHHHHHHCHHHHHHHhhc
Q 032214 69 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL-SIQALLSA--PNPDDPLSDNIAKHWKADETEAVETGNS 144 (145)
Q Consensus 69 P~v~f~~~i~hp~v~~~G~icl~~l~~~W~p~~~i~~il~-~i~~~l~~--~~~~~~~n~~a~~~~~~~~~~f~~~a~~ 144 (145)
|+|+|.|++|||||+.+|.||++++.++|+|+++++++|. .|++++.. |++++|+|.||+++|++|+++|.++||+
T Consensus 86 P~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 86 PTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp CEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred CEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999765 56777764 8999999999999999999999999985
No 41
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2.1e-46 Score=297.45 Aligned_cols=141 Identities=48% Similarity=0.830 Sum_probs=138.6
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~ 84 (145)
.+.|||++|++++++++++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 82 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
+|.||++++.++|+|++++++||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|
T Consensus 83 ~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~ 143 (399)
T 4ddg_A 83 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143 (399)
T ss_dssp TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=2.2e-44 Score=252.90 Aligned_cols=132 Identities=25% Similarity=0.435 Sum_probs=121.2
Q ss_pred CCCchHHHHHHHHHHHhhC-CCCCeEEeeCC-C--CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccc
Q 032214 2 ASGNLPRRIVKETQRLLSE-PAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~-~~~g~~v~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i 77 (145)
++..+.+||++|+++++++ +++|+++.+.+ + |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 18 GIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp SCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 3467889999999999998 78899998853 3 599999999999999999999999999999999999999999999
Q ss_pred ccccccCCCce---eccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHC
Q 032214 78 YHPNIDKLGRI---CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKAD 134 (145)
Q Consensus 78 ~hp~v~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~ 134 (145)
|||||+.+|.| |++++. +|+|+++|++||.+|+++|.+|++++++|.+|+++|++|
T Consensus 98 ~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 98 EMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred ccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 99999999999 888887 599999999999999999999999999999999999875
No 43
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-43 Score=238.45 Aligned_cols=117 Identities=33% Similarity=0.605 Sum_probs=106.4
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccc-cccccc
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNID 83 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i-~hp~v~ 83 (145)
.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 85 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY 85 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCC
Q 032214 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121 (145)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~ 121 (145)
.+|.||++++.++|+|++++++||.+|+++|.+|+.+.
T Consensus 86 ~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 86 SNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred CCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999999999999988653
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=2.2e-44 Score=248.64 Aligned_cols=130 Identities=25% Similarity=0.419 Sum_probs=118.0
Q ss_pred CCCCchHHHHHHHHHHHhhC-CCCCeEEeeCC-C--CCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 1 MASGNLPRRIVKETQRLLSE-PAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 1 m~s~~~~kRL~~E~~~l~~~-~~~g~~v~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
|++..+.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 77888899999999999998 78899998853 3 48999999999999999999999999999999999999999999
Q ss_pred cccccccCC-Cce--eccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032214 77 IYHPNIDKL-GRI--CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHW 131 (145)
Q Consensus 77 i~hp~v~~~-G~i--cl~~l~~~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~ 131 (145)
+|||||+.+ |.| |++++. +|+|++++++||.+|+++|.+|++++++|.+|+++|
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 999999985 999 898886 899999999999999999999999999999988654
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.6e-42 Score=237.62 Aligned_cols=116 Identities=33% Similarity=0.613 Sum_probs=112.0
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccc-ccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNI 82 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i-~hp~v 82 (145)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhcCCCC
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 119 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~~~~~ 119 (145)
+.+|.||+++|.++|+|++++++||.+|+++|.+|+.
T Consensus 99 ~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 99 YSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999999999999999998874
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.1e-42 Score=243.40 Aligned_cols=125 Identities=23% Similarity=0.387 Sum_probs=116.0
Q ss_pred CchHHHHHHHHHHHhhCCCCC-eEEee-CCCC--CceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g-~~v~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
..+.|||++|++++++++++| +.+.+ .++| ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 103 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 103 (160)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence 357789999999999998888 67776 4454 8999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCceeccCCC--CCCCCcCCHHHHHHHHHHHhc-CCCCCCcccHHHH
Q 032214 80 PNID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLS-APNPDDPLSDNIA 128 (145)
Q Consensus 80 p~v~-~~G~icl~~l~--~~W~p~~~i~~il~~i~~~l~-~~~~~~~~n~~a~ 128 (145)
|||+ .+|.||++++. ++|+|+++|++||.+|+++|. .||+++|+|.|||
T Consensus 104 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 104 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred CCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 9999 69999999997 899999999999999999995 6999999999986
No 47
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=264.92 Aligned_cols=144 Identities=28% Similarity=0.539 Sum_probs=132.8
Q ss_pred CCCchHHHHHHHHHHHhhCCCCC----eEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc-
Q 032214 2 ASGNLPRRIVKETQRLLSEPAPG----ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK- 76 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~~~g----~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~- 76 (145)
+|..+.+||++|+++|++++++| +.+.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~ 152 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence 45678999999999999987764 5577789999999999999999999999999999999999999999999998
Q ss_pred ----cccccccCCCceeccCCC-------CCCCCcC-CHHHHHHHHHHHhc--CCCCCCcccHHH--HHHHHHCHHHHHH
Q 032214 77 ----IYHPNIDKLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLS--APNPDDPLSDNI--AKHWKADETEAVE 140 (145)
Q Consensus 77 ----i~hp~v~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~~l~--~~~~~~~~n~~a--~~~~~~~~~~f~~ 140 (145)
+|||||+.+|.||+++|. ++|+|++ +|.+||.+|+++|. +|++++|+|.++ +.+|.+|+++|.+
T Consensus 153 g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~ 232 (323)
T 3ceg_A 153 GHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDG 232 (323)
T ss_dssp TTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHH
T ss_pred CCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHH
Confidence 999999999999999997 6899999 89999999999996 577799999987 5799999999999
Q ss_pred HhhcC
Q 032214 141 TGNSY 145 (145)
Q Consensus 141 ~a~~~ 145 (145)
+|++|
T Consensus 233 ~vr~~ 237 (323)
T 3ceg_A 233 NIRQA 237 (323)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-41 Score=233.88 Aligned_cols=109 Identities=35% Similarity=0.678 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEe--eCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccc--cccc
Q 032214 7 PRRIVKETQRLLSEPAPGISAS--PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY--HPNI 82 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~~g~~v~--~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~--hp~v 82 (145)
.+||++|++++++++++|+++. +.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 4999999999999999999975 78899999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHHHHhc
Q 032214 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLS 115 (145)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~~l~ 115 (145)
+.+|+||+++|.++|+|++++++||.+|+++|+
T Consensus 104 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 104 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 999999999999999999999999999999874
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=8.4e-42 Score=242.69 Aligned_cols=125 Identities=23% Similarity=0.391 Sum_probs=115.9
Q ss_pred CchHHHHHHHHHHHhhCCCCC-eEEee-CCCC--CceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccc
Q 032214 4 GNLPRRIVKETQRLLSEPAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (145)
Q Consensus 4 ~~~~kRL~~E~~~l~~~~~~g-~~v~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~h 79 (145)
..+.+||++|++++++++++| +.+.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 457899999999999998888 56776 4554 8999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCceeccCCC--CCCCCcCCHHHHHHHHHHHhcC-CCCCCcccHHHH
Q 032214 80 PNID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLSA-PNPDDPLSDNIA 128 (145)
Q Consensus 80 p~v~-~~G~icl~~l~--~~W~p~~~i~~il~~i~~~l~~-~~~~~~~n~~a~ 128 (145)
|||+ .+|.||++++. ++|+|+++|++||.+|+++|.+ ||+++|+|.|||
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 9999 69999999997 8999999999999999999975 999999999886
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-39 Score=233.23 Aligned_cols=136 Identities=24% Similarity=0.513 Sum_probs=114.6
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 032214 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (145)
Q Consensus 3 s~~~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v 82 (145)
+..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.|+ ||++
T Consensus 12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~ 89 (187)
T 2f4w_A 12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRF 89 (187)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSB
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Ccee
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCceeccCC---CCCCCCcCCHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHCHHHHHH
Q 032214 83 DKLGRICLDIL---KDKWSPALQIRTVLLSIQALLSAPNPDDP---LSDNIAKHWKADETEAVE 140 (145)
Q Consensus 83 ~~~G~icl~~l---~~~W~p~~~i~~il~~i~~~l~~~~~~~~---~n~~a~~~~~~~~~~f~~ 140 (145)
+.+|.||+++| .++|+|+++|.+||.+|+++|.+|+++.. ......++|..+...|..
T Consensus 90 ~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~ 153 (187)
T 2f4w_A 90 KCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNL 153 (187)
T ss_dssp CTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHHHhh
Confidence 99999999999 68999999999999999999999998743 234455566665555543
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=1.2e-39 Score=234.70 Aligned_cols=120 Identities=21% Similarity=0.369 Sum_probs=112.5
Q ss_pred CCCchHHHHHHHHHHHhhCC---CCCeEEeeCCCCCceeEEEEECC-CCCCCCC-----------CEEEEEEeCCCCCCC
Q 032214 2 ASGNLPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGP-SQSPYEG-----------GVFKLELFLPEDYPM 66 (145)
Q Consensus 2 ~s~~~~kRL~~E~~~l~~~~---~~g~~v~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~f~~~YP~ 66 (145)
+|..+.+||++|+++|++++ +.|+++.+.++|++.|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 45678999999999999988 68899999999999999999997 9999998 899999999999999
Q ss_pred CCCeEEEecccccc-cccCCCceeccCCC-CCCCCcCCHHHHHHHHHHHhcCCCCCC
Q 032214 67 SAPKVRFLTKIYHP-NIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDD 121 (145)
Q Consensus 67 ~pP~v~f~~~i~hp-~v~~~G~icl~~l~-~~W~p~~~i~~il~~i~~~l~~~~~~~ 121 (145)
+||+|+|.+++||| ||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|+++.
T Consensus 104 ~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~ 160 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV 160 (186)
T ss_dssp SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH
Confidence 99999999999999 69999999999996 789999999999999999999887553
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.95 E-value=4.1e-30 Score=178.98 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCC----------EEEEEEeCCCCCCCCCCeEEEecc
Q 032214 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
.+||++|++.|++ ++.+.++|++.|.+++.||++|+|+|| .|+++|.||++||.+||+|+|.+.
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 8999999999999 467778899999999999999999999 999999999999999999999998
Q ss_pred -cccccccCCCceeccCC-CC---CCCCcCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHC
Q 032214 77 -IYHPNIDKLGRICLDIL-KD---KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKAD 134 (145)
Q Consensus 77 -i~hp~v~~~G~icl~~l-~~---~W~p~~~i~~il~~i~~~l~~~~~~~~~n~~a~~~~~~~ 134 (145)
+||||||.+|+||++++ .. .|+|.++|.++|.- -...++..|+..+..+.
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~~ 162 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQKG 162 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHcC
Confidence 99999999999999999 43 45699999999842 12233555666555443
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.83 E-value=1.9e-20 Score=131.19 Aligned_cols=114 Identities=24% Similarity=0.422 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhCCC---CCeEEeeCCCCCceeEEEEECCCCCCCCCCE---EEEEEeCCCCCCCCCCeEEEecc----
Q 032214 7 PRRIVKETQRLLSEPA---PGISASPAEDNMRYFNVMILGPSQSPYEGGV---FKLELFLPEDYPMSAPKVRFLTK---- 76 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~---~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~f~~~YP~~pP~v~f~~~---- 76 (145)
.+|..+|...+.+.-+ +...+...+|....+-+.+.|.-.++|+|+. |.+.|-||++||++||.|.|.++
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 4677788877765321 2334455677777777788887779999998 88999999999999999988651
Q ss_pred ------cc-cccccCCCceeccCCCCCCCC-cCCHHHHHHHHHHHhcCCCCCC
Q 032214 77 ------IY-HPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSAPNPDD 121 (145)
Q Consensus 77 ------i~-hp~v~~~G~icl~~l~~~W~p-~~~i~~il~~i~~~l~~~~~~~ 121 (145)
++ ||||+.+|+||+++|. +|+| +.++.++|.+|.++|.+|++|.
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 67 9999999999999995 6998 6799999999999999999985
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.80 E-value=2.4e-21 Score=132.13 Aligned_cols=96 Identities=19% Similarity=0.349 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCC----------EEEEEEeCCCCCCCCCCeEEEec
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLT 75 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~f~~~YP~~pP~v~f~~ 75 (145)
=..||.+||+.|-+ +|....++-..|...+.||+||+|.|+ .|.+++.||.+||.+||+|+|.+
T Consensus 35 w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ 108 (168)
T 3kpa_A 35 WTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPE 108 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred HHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeeccc
Confidence 35799999999887 455545555679999999999999999 99999999999999999999999
Q ss_pred c-cccccccCCCceeccCCC-CCC---CCcCCHHHHH
Q 032214 76 K-IYHPNIDKLGRICLDILK-DKW---SPALQIRTVL 107 (145)
Q Consensus 76 ~-i~hp~v~~~G~icl~~l~-~~W---~p~~~i~~il 107 (145)
. .+||++|.+|+||++++. .-| .|.++|.+.|
T Consensus 109 ldgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 109 LEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp GTTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred ccCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence 5 899999999999999972 122 4556776654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.55 E-value=7.8e-15 Score=101.09 Aligned_cols=81 Identities=20% Similarity=0.459 Sum_probs=71.1
Q ss_pred CCCCCceeEEEEECCCCCCCCCCEEEE--EEeCCCCCCCCCCeEEEecc------cccccccCCCceeccCCCCCCCC-c
Q 032214 30 AEDNMRYFNVMILGPSQSPYEGGVFKL--ELFLPEDYPMSAPKVRFLTK------IYHPNIDKLGRICLDILKDKWSP-A 100 (145)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~f~~~YP~~pP~v~f~~~------i~hp~v~~~G~icl~~l~~~W~p-~ 100 (145)
...+++.|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ ..|+|||.+|++|++.|.+ |++ .
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~ 122 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQ 122 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTT
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCC
Confidence 3468889999997 6899999995 889999999999999 6655 4899999999999999964 987 7
Q ss_pred CCHHHHHHHHHHHhcC
Q 032214 101 LQIRTVLLSIQALLSA 116 (145)
Q Consensus 101 ~~i~~il~~i~~~l~~ 116 (145)
.++.+++..+++.|.+
T Consensus 123 snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 123 SDLLGLIQVMIVVFGD 138 (146)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 8999999999999865
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.31 E-value=0.0075 Score=39.77 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~ 75 (145)
...+...|+..|+.-=+..+.+ .++....+.+.+....+..-+.-.+.+.|.+|++||..||.+.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4567788988887633333433 2323456666665211222233478899999999999999998765
No 57
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=96.69 E-value=0.019 Score=39.23 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.0
Q ss_pred EEEEEEeCCCCCCCCCCeEEEec
Q 032214 53 VFKLELFLPEDYPMSAPKVRFLT 75 (145)
Q Consensus 53 ~f~~~i~f~~~YP~~pP~v~f~~ 75 (145)
.+.++|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998665
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.53 E-value=0.023 Score=37.35 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCC--CCCceeEEEEECCCCCCCC--CCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAE--DNMRYFNVMILGPSQSPYE--GGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~--~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
....+...|+..|+.-=+..+.+.-.. .+...+.+.+..+.+..-+ .-.+.+.|.+|++||..+|.|...+.
T Consensus 8 e~~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 8 EEDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CCCCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 344578889988876433444443221 1234455555422221111 24788999999999999999988763
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.062 Score=35.71 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeeCC-------CCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 7 PRRIVKETQRLLSEPAPGISASPAE-------DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 7 ~kRL~~E~~~l~~~~~~g~~v~~~~-------~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
..+...|+..|+.-=+..+.+ ... +....+.+.+.+ ....-..-.+.+.|.+|++||..||.|.+.+.
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~f~I~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 12 YEIQCNELEAIRSIYMDDFTD-LTKRKSSWDKQPQIIFEITLRS-VDKEPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHTTSSSSEEC-CSTTSSSSCSSCCSCEEEEEEC-SSCSSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHHChhhhee-cccccccccCCCCcEEEEEEec-CCCCCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 345667777776632223322 121 124567777763 22121234788999999999999999987653
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=96.16 E-value=0.069 Score=37.74 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCCc
Q 032214 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (145)
Q Consensus 8 kRL~~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G~ 87 (145)
.+|.+|+.+|-=+ .+.-.+.++....+.+..- .|-.+.++|.++.+||.++|.+...-|. |
T Consensus 4 ~~li~Ei~~iGW~-----~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~------- 64 (186)
T 3zqs_A 4 SSLIEEIGTLGWD-----KLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--P------- 64 (186)
T ss_dssp CSHHHHHHHHCGG-----GEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--C-------
T ss_pred HHHHHHHHHhCCc-----eeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--C-------
Confidence 4678888887432 1333356788888888742 3568999999999999999988655443 1
Q ss_pred eeccCCCCCCCCcCCHHHHHHHHHHHhc
Q 032214 88 ICLDILKDKWSPALQIRTVLLSIQALLS 115 (145)
Q Consensus 88 icl~~l~~~W~p~~~i~~il~~i~~~l~ 115 (145)
+.-.|+|..++.+++.+.+.++.
T Consensus 65 -----~~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 65 -----FCASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp -----CCCCCCTTCCHHHHHHHHHHHHH
T ss_pred -----cccccCCCccHHHHHHHHHHHHH
Confidence 11379999999888877766653
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.96 E-value=0.14 Score=33.46 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhhC-CC-CCeEEe-eCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe
Q 032214 6 LPRRIVKETQRLLSE-PA-PGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL 74 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~-~~-~g~~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~ 74 (145)
+..+...|+..|+.- +. ..+.+. ....+...+.+.+.. .+..-..-.+.+.|.+|.+||..+|.+...
T Consensus 8 ~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 8 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 345677888877752 11 123221 111224577777763 221111247899999999999999998654
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.16 E-value=0.48 Score=31.18 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEeeCCC-----CCceeEEEEECCCCC--CCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 032214 5 NLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQS--PYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (145)
Q Consensus 5 ~~~kRL~~E~~~l~~~~~~g~~v~~~~~-----~~~~w~~~i~Gp~~t--py~gg~f~~~i~f~~~YP~~pP~v~f~~ 75 (145)
....+...|+..|+.-=...+.+.-... ....+.+.+. +.+. .-..-.+.+.|.||++||..+|.|.+.+
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred chHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 3456677888887763223343321111 1345556664 2221 0012468899999999999999998753
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.28 E-value=0.35 Score=32.67 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCCCCCCCeEEEecc
Q 032214 53 VFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 53 ~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
.+.+.|.+|.+||..||.+.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999987653
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=91.21 E-value=0.039 Score=35.62 Aligned_cols=32 Identities=6% Similarity=0.085 Sum_probs=0.0
Q ss_pred hcCCCCCCcccHHHHHHHHHCHHHHHHHhhcC
Q 032214 114 LSAPNPDDPLSDNIAKHWKADETEAVETGNSY 145 (145)
Q Consensus 114 l~~~~~~~~~n~~a~~~~~~~~~~f~~~a~~~ 145 (145)
|+-.....|.+.++|++|.++.+.|.++|+.|
T Consensus 18 ~~~~~~~~PQDA~VA~qy~~~~~~f~~TAr~W 49 (108)
T 2cwb_A 18 LKGETTTEAVDAATAEKVFKQYANDNGVDGEW 49 (108)
T ss_dssp --------------------------------
T ss_pred ccCcccCCchhHHHHHHHHhchhccccccccc
Confidence 44456677999999999999999999999988
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=71.76 E-value=3 Score=18.89 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhhCCCCCe
Q 032214 6 LPRRIVKETQRLLSEPAPGI 25 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~ 25 (145)
-+.||.-|+...+-+|+.|.
T Consensus 6 eldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 6 ELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHhhhccCCCCCC
Confidence 46799999999999998874
No 66
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=36.05 E-value=99 Score=21.28 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=32.1
Q ss_pred CCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 32 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 32 ~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
+....|.+.+.|+.+.-...-+=++.+.+.+.||. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 45678999999987654445577899999999974 66666554
No 67
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=34.50 E-value=94 Score=22.84 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC--Cceec
Q 032214 43 GPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL--GRICL 90 (145)
Q Consensus 43 Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~--G~icl 90 (145)
.|+-+--|+..|..++.=... .||.+.|....-.+.+|++ |-+|.
T Consensus 193 ~pDPskNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 239 (277)
T 3s7v_A 193 APDPSRNDNCRYFGRVVGGAA---TPPVVSYGNNSTIPLLDENGIGILCL 239 (277)
T ss_dssp EECTTSCCSEEEEEEEECCSS---CCCEEEEESSCCEECCCTTSCCEECT
T ss_pred CCCCCcCcCceeeEEecCCCC---CCCeEEecCceeEEEEcCCCcccccc
Confidence 366666777777777776655 7899999999999999987 45884
No 68
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=33.37 E-value=42 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCCEEEEEEeCCCCCCC-----CCCeEEEe
Q 032214 50 EGGVFKLELFLPEDYPM-----SAPKVRFL 74 (145)
Q Consensus 50 ~gg~f~~~i~f~~~YP~-----~pP~v~f~ 74 (145)
+.|.|.|+-.+|.-||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 46889999999999998 78888875
No 69
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=31.34 E-value=1.1e+02 Score=20.17 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=32.1
Q ss_pred CceeE--EEEECCCCCCCC-CCEEEEEEeCCCCCCCCCCeEEEecccc
Q 032214 34 MRYFN--VMILGPSQSPYE-GGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (145)
Q Consensus 34 ~~~w~--~~i~Gp~~tpy~-gg~f~~~i~f~~~YP~~pP~v~f~~~i~ 78 (145)
+..|. +.+.|+.+.... .-+=++.+.+.+.|+ .|...+..+-|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 46898 788898888664 456678889999988 48777776543
No 70
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=29.92 E-value=46 Score=18.74 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHCHHHHHHHh
Q 032214 123 LSDNIAKHWKADETEAVETG 142 (145)
Q Consensus 123 ~n~~a~~~~~~~~~~f~~~a 142 (145)
-|++..++..+|.++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 78999999999999998764
No 71
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=28.23 E-value=1.2e+02 Score=23.36 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=32.7
Q ss_pred CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC--ceec
Q 032214 44 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (145)
Q Consensus 44 p~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G--~icl 90 (145)
|+-+--|+..|..++.=... .||.+.|....-.+..|+|| -+|.
T Consensus 229 PDPskNENtRYFG~~tGG~~---TPPVlqftNt~TTvLLDENGVGpLCk 274 (383)
T 1sid_A 229 PDPAKNENTRYFGNYTGGTT---TPPVLQFTNTLTTVLLDENGVGPLCK 274 (383)
T ss_dssp ECCCSSCSEEEEEEEECCSS---CCCEEEEESSCEEECCCTTSCCCBCS
T ss_pred CCCCcCcCceeeEEecCCCC---CCCeEEeccceeEEEEcCCCcccccc
Confidence 55556666677776666554 68999999999899999874 4763
No 72
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=27.87 E-value=1.6e+02 Score=21.80 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=34.8
Q ss_pred CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC--Cceec
Q 032214 44 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL--GRICL 90 (145)
Q Consensus 44 p~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~--G~icl 90 (145)
|+-+--|+..|..++.=..+ .||.+.|....-.+..+++ |-+|.
T Consensus 198 PDPskNENtRYFG~~tGG~~---TPpvl~ftNt~TtvLldEnGvGpLCk 243 (289)
T 1vps_A 198 PDPAKNENTRYFGNYTGGTT---TPPVLQFTNTLTTVLLDENGVGPLCK 243 (289)
T ss_dssp ECTTSCTTEEEEEEEECCSS---CCCEEEEESSCCEECCCTTSCCCEES
T ss_pred CCCCcCcCceeeeeecCCCC---CCCeEEecCceeEEEEcCCCcccccc
Confidence 66667777778887776664 7899999999989999986 55884
No 73
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=27.81 E-value=1.1e+02 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=34.6
Q ss_pred EEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC--cee
Q 032214 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RIC 89 (145)
Q Consensus 40 ~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G--~ic 89 (145)
.+..|+-+--|+..|..++.=... .||.+.|....-.+.+|++| -+|
T Consensus 197 E~W~PDPskNENtRYFG~~tGG~~---TPPVlqftNt~TTvLLDENGVGpLC 245 (343)
T 3iys_A 197 ECWCPDPAKNENTRYYGNLTGGPE---TPPVLAFTNTTTTILLDENGVGPLC 245 (343)
T ss_pred EEECCCCCcCcCceeeEEecCCCC---CCCeEEeccceeEEEEcCCCccccc
Confidence 344566666677777777666554 78999999988889999874 466
No 74
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=27.43 E-value=83 Score=17.31 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=8.6
Q ss_pred EEEeCCCCCCC
Q 032214 56 LELFLPEDYPM 66 (145)
Q Consensus 56 ~~i~f~~~YP~ 66 (145)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 55678999984
No 75
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=24.88 E-value=65 Score=18.80 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHCHHHHHHHh
Q 032214 123 LSDNIAKHWKADETEAVETG 142 (145)
Q Consensus 123 ~n~~a~~~~~~~~~~f~~~a 142 (145)
-|++.+++..+|+++|.+..
T Consensus 39 ~NPqL~q~I~~n~e~Fl~ll 58 (72)
T 1pve_A 39 ENPQLLQQISQHQEHFIQML 58 (72)
T ss_dssp TCHHHHHHHHTTHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 78999999999999998764
No 76
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=24.09 E-value=53 Score=16.79 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhh
Q 032214 6 LPRRIVKETQRLLS 19 (145)
Q Consensus 6 ~~kRL~~E~~~l~~ 19 (145)
-.+|+..|.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 29 KIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 46899999988753
No 77
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Probab=22.93 E-value=1.3e+02 Score=22.08 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC--ceec
Q 032214 43 GPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (145)
Q Consensus 43 Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G--~icl 90 (145)
.|+-+--|+..|..++.=... .||.+.|....-.+..|++| -+|.
T Consensus 184 ~pDPskNENtRYfG~~tGG~~---TPPVlqftNt~TTvLLDENGVGpLCk 230 (272)
T 3nxg_A 184 VPDPTRNENTRYFGTLTGGEN---VPPVLHITNTATTVLLDEFGVGPLCK 230 (272)
T ss_dssp EECTTSCTTEEEEEEEECSTT---CCCEEEEESSCCEECCCTTSCCCBCG
T ss_pred CCCCCcCcCceeEEEecCCCC---CCCeEEecCceeEEEEcCCCcccccc
Confidence 366677777788888777665 78999999999999999874 5774
No 78
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=22.87 E-value=47 Score=21.96 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCCeEEeeCCCCCceeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe---cccccccccCCCce
Q 032214 12 KETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL---TKIYHPNIDKLGRI 88 (145)
Q Consensus 12 ~E~~~l~~~~~~g~~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~---~~i~hp~v~~~G~i 88 (145)
+++++....-+.|+.+....++ -..++...+ .| ..+. ..||.|.+. +.--|++|..+|.+
T Consensus 5 ~~fr~a~~~~p~~V~vVTt~~~-g~~~g~t~s---------~~-~svs------~~PP~v~v~i~~~~~t~~~i~~~~~F 67 (157)
T 3pft_A 5 TSLREAFGHFPSGVIAIAAEVD-GTRVGLAAS---------TF-VPVS------LEPPLVAFAVQNSSTTWPKLKDLPSL 67 (157)
T ss_dssp HHHHHHHHTSCBCCEEEEEEET-TEEEEEEES---------CC-EEEE------TTTTEEEEEEETTCSSHHHHTTSSCE
T ss_pred HHHHHHHHhCCCceEEEEEeeC-CEEEEEEee---------eE-eEEE------CCCcEEEEEECCCCchHHHHHhCCEE
Confidence 4667777777777775543221 122322221 01 1222 368988875 33468899999999
Q ss_pred eccCCCC
Q 032214 89 CLDILKD 95 (145)
Q Consensus 89 cl~~l~~ 95 (145)
|++++.+
T Consensus 68 ~Vnvl~~ 74 (157)
T 3pft_A 68 GISVLGE 74 (157)
T ss_dssp EEEECBT
T ss_pred EEEECCH
Confidence 9999964
No 79
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=22.78 E-value=1.4e+02 Score=19.15 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEeeCCCC
Q 032214 6 LPRRIVKETQRLLSEPAPGISASPAEDN 33 (145)
Q Consensus 6 ~~kRL~~E~~~l~~~~~~g~~v~~~~~~ 33 (145)
.++.|..||.+|.+.+...+++...+..
T Consensus 32 lS~~Lid~La~i~~~~~e~fTle~i~s~ 59 (122)
T 1u9d_A 32 LVPTLLNELSSLLSTARNAFTFELINTQ 59 (122)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEECCCC
T ss_pred HhHHHHHHHHHHHCCCcccEEEEEeeeE
Confidence 4678899999999999999998876643
No 80
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=21.72 E-value=1.4e+02 Score=22.09 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=44.7
Q ss_pred CCCeEEeeCCCCCc---eeEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC--ceec
Q 032214 22 APGISASPAEDNMR---YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG--RICL 90 (145)
Q Consensus 22 ~~g~~v~~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~~~i~hp~v~~~G--~icl 90 (145)
.+..++....|..+ .| .|+-+--|+..|..++.=... .||.+.|....-.+..|++| -+|.
T Consensus 182 ~p~~Ka~ldkdg~yPVE~W-----~PDPsrNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 247 (289)
T 4fmh_A 182 DPQAKAKLDKDGNYPIEVW-----CPDPSKNENSRYYGSIQTGSQ---TPTVLQFSNTLTTVLLDENGVGPLCK 247 (289)
T ss_dssp CTTCEEEECSTTCSBTTTE-----EECTTSCTTEEEEEEEECSSS---CCCEEEEETTCCEECCCTTSCCCBCG
T ss_pred CchhheeeccCCccceEEE-----CCCCCcCcCceeeeEecCCCC---CCCeEEecCceeEEEEcCCCccccee
Confidence 45566666655322 35 367777888888888887665 78999999998889999874 4774
No 81
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=21.39 E-value=1.5e+02 Score=18.14 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=19.1
Q ss_pred CEEEEEEeCCCCCCCCCCeEEEecc
Q 032214 52 GVFKLELFLPEDYPMSAPKVRFLTK 76 (145)
Q Consensus 52 g~f~~~i~f~~~YP~~pP~v~f~~~ 76 (145)
-.+...|.|+..|+ .+|.|.+.-.
T Consensus 29 R~~~~~V~F~~~F~-~~P~V~v~l~ 52 (101)
T 2ccv_A 29 RELAKNITFASPYC-RPPVVLLSIT 52 (101)
T ss_dssp EEEEEEEECSSCCS-SCCEEEEEEE
T ss_pred eEEEEEeEeCcccC-CCCEEEEEeE
Confidence 46778899999999 5999987643
No 82
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=21.38 E-value=56 Score=14.62 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHH
Q 032214 6 LPRRIVKETQRL 17 (145)
Q Consensus 6 ~~kRL~~E~~~l 17 (145)
..+.|.+|+++-
T Consensus 9 lqkkirkelkqr 20 (26)
T 1m46_B 9 LQKKIRKELKQR 20 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467888888653
No 83
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=21.22 E-value=41 Score=20.42 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHH
Q 032214 6 LPRRIVKETQRL 17 (145)
Q Consensus 6 ~~kRL~~E~~~l 17 (145)
-+||+++||+-|
T Consensus 63 QLKRvQRdlrGL 74 (87)
T 2rf4_B 63 QLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHhhcCC
Confidence 468888887653
Done!