BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032215
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
           Aldolase
          Length = 304

 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)

Query: 99  KLVMAGSGCENSEKVEEV---LLQVGGD 123
           +L++AGSGCE+++   E+   + QVG D
Sbjct: 81  RLLLAGSGCESTQATVEMTVSMAQVGAD 108


>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
           Aldolase Bound To Pyruvate
          Length = 307

 Score = 26.9 bits (58), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)

Query: 99  KLVMAGSGCENSEKVEEV---LLQVGGD 123
           +L++AGSGCE+++   E+   + QVG D
Sbjct: 84  RLLLAGSGCESTQATVEMTVSMAQVGAD 111


>pdb|2KNZ|A Chain A, Nmr Structure Of Cip75 Uba Domain
          Length = 53

 Score = 26.9 bits (58), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 106 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135
           G  N E   + L+  GGD++AAIE L+  Q
Sbjct: 22  GFINREANLQALIATGGDINAAIERLLGSQ 51


>pdb|2DAH|A Chain A, Solution Structure Of The C-Terminal Uba Domain In The
           Human Ubiquilin 3
          Length = 54

 Score = 26.6 bits (57), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 106 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136
           G  N E   + L+  GGDVDAA+E L    G
Sbjct: 20  GFLNREANLQALIATGGDVDAAVEKLRQSSG 50


>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
           Kinase Complexed With Two Molecules Of Adp And Mg
          Length = 201

 Score = 26.6 bits (57), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 107 CENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135
            E ++ + E+L + G D+DA +EF ++E+
Sbjct: 110 VEQAKALHEMLERRGTDIDAVLEFRVSEE 138


>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
           Kinase
          Length = 181

 Score = 26.2 bits (56), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 107 CENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135
            E ++ + E+L + G D+DA +EF ++E+
Sbjct: 90  VEQAKALHEMLERRGTDIDAVLEFRVSEE 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,800,955
Number of Sequences: 62578
Number of extensions: 128918
Number of successful extensions: 273
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)