Query 032215
Match_columns 145
No_of_seqs 53 out of 55
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3phu_A RNA-directed RNA polyme 97.6 4.8E-06 1.6E-10 67.5 -1.2 30 36-65 143-172 (219)
2 3phx_A RNA-directed RNA polyme 97.5 7.2E-06 2.5E-10 64.4 -2.2 30 36-65 143-172 (185)
3 2cp9_A EF-TS, EF-TSMT, elongat 97.3 0.00036 1.2E-08 47.4 5.0 44 91-135 6-49 (64)
4 1wj7_A Hypothetical protein (R 97.0 0.0008 2.7E-08 49.6 5.0 39 96-135 41-79 (104)
5 2dhy_A CUE domain-containing p 96.9 0.0017 5.9E-08 44.2 5.5 43 96-138 20-62 (67)
6 1wgl_A TOLL-interacting protei 96.9 0.0016 5.6E-08 43.1 5.0 43 95-137 10-52 (59)
7 2bwb_A Ubiquitin-like protein 96.7 0.0029 9.9E-08 39.7 5.2 37 96-133 9-45 (46)
8 2dah_A Ubiquilin-3; UBA domain 96.6 0.0031 1E-07 40.9 4.7 39 96-135 11-49 (54)
9 3e21_A HFAF1, FAS-associated f 96.6 0.0025 8.6E-08 40.4 4.0 34 96-129 7-40 (45)
10 1wr1_B Ubiquitin-like protein 96.6 0.0041 1.4E-07 41.0 5.2 37 96-133 19-55 (58)
11 1z96_A DNA-damage, UBA-domain 96.4 0.0042 1.4E-07 36.5 4.2 35 96-132 6-40 (40)
12 2knz_A Ubiquilin-4; cytoplasm, 96.3 0.0081 2.8E-07 38.4 5.3 38 96-134 13-50 (53)
13 1tr8_A Conserved protein (MTH1 96.3 0.0035 1.2E-07 45.6 4.0 39 92-131 63-101 (102)
14 1vej_A Riken cDNA 4931431F19; 96.2 0.0071 2.4E-07 41.8 5.0 38 96-134 31-68 (74)
15 2dam_A ETEA protein; KIAA0887, 96.2 0.0067 2.3E-07 40.7 4.7 40 96-135 20-59 (67)
16 3pfy_A OTU domain-containing p 96.2 0.00037 1.3E-08 55.0 -2.0 17 36-52 165-181 (185)
17 1wji_A Tudor domain containing 96.2 0.015 5.2E-07 38.6 6.1 45 92-138 7-51 (63)
18 2g3q_A Protein YBL047C; endocy 96.1 0.01 3.4E-07 36.0 4.7 36 96-133 6-41 (43)
19 1v92_A NSFL1 cofactor P47; 3-h 96.1 0.012 4.1E-07 35.7 4.9 37 96-133 7-43 (46)
20 2jy5_A Ubiquilin-1; UBA, alter 96.0 0.0089 3.1E-07 38.2 4.3 37 96-133 14-50 (52)
21 1vg5_A RSGI RUH-014, rhomboid 95.8 0.015 5.3E-07 39.9 5.2 40 95-136 30-69 (73)
22 2dal_A Protein KIAA0794; FAS a 95.8 0.016 5.4E-07 38.2 5.0 40 96-136 17-56 (62)
23 2dna_A Unnamed protein product 95.8 0.011 3.8E-07 40.4 4.2 39 96-135 21-59 (67)
24 1ify_A HHR23A, UV excision rep 95.7 0.016 5.5E-07 36.4 4.6 36 96-133 10-45 (49)
25 2dak_A Ubiquitin carboxyl-term 95.7 0.023 7.8E-07 37.2 5.4 45 91-137 6-50 (63)
26 1p3q_Q VPS9P, vacuolar protein 95.6 0.0024 8.2E-08 42.2 0.3 40 96-135 14-53 (54)
27 1otr_A Protein CUE2; protein-p 95.3 0.046 1.6E-06 35.1 5.5 39 96-134 6-44 (49)
28 3by4_A OTU1, ubiquitin thioest 95.2 0.0017 6E-08 51.6 -1.7 22 36-58 124-145 (212)
29 1wiv_A UBP14, ubiquitin-specif 95.1 0.044 1.5E-06 37.2 5.4 41 93-135 28-68 (73)
30 1whc_A RSGI RUH-027, UBA/UBX 3 94.8 0.067 2.3E-06 35.3 5.5 43 93-137 8-51 (64)
31 2cwb_A Chimera of immunoglobul 94.8 0.035 1.2E-06 40.8 4.5 38 96-134 68-105 (108)
32 1veg_A NEDD8 ultimate buster-1 94.5 0.086 2.9E-06 37.1 5.8 41 94-136 29-69 (83)
33 2dag_A Ubiquitin carboxyl-term 94.3 0.1 3.6E-06 35.4 5.8 43 93-137 8-51 (74)
34 2dai_A Ubadc1, ubiquitin assoc 94.3 0.1 3.5E-06 36.4 5.7 44 91-136 26-69 (83)
35 2cp8_A NEXT to BRCA1 gene 1 pr 94.1 0.058 2E-06 35.5 3.9 38 101-138 15-52 (54)
36 2ekk_A UBA domain from E3 ubiq 94.1 0.061 2.1E-06 33.1 3.8 39 92-133 7-45 (47)
37 1aip_C EF-TS, elongation facto 93.8 0.063 2.2E-06 43.1 4.4 37 96-133 5-41 (196)
38 1xb2_B EF-TS, elongation facto 93.6 0.066 2.2E-06 44.9 4.4 38 95-133 5-42 (291)
39 2dzl_A Protein FAM100B; UBA-li 93.6 0.079 2.7E-06 35.4 4.0 40 96-136 19-58 (66)
40 1vdl_A Ubiquitin carboxyl-term 93.4 0.086 2.9E-06 37.3 4.0 42 97-138 27-68 (80)
41 2dkl_A Trinucleotide repeat co 93.3 0.078 2.7E-06 37.2 3.7 42 93-136 20-61 (85)
42 4ae4_A Ubiquitin-associated pr 93.2 0.092 3.2E-06 38.6 4.1 39 96-136 78-116 (118)
43 2crn_A Ubash3A protein; compac 93.0 0.24 8.1E-06 32.8 5.6 42 94-137 9-51 (64)
44 1wgn_A UBAP1, ubiquitin associ 92.7 0.13 4.5E-06 35.0 3.9 42 94-137 19-60 (63)
45 1dv0_A DNA repair protein HHR2 91.8 0.067 2.3E-06 33.5 1.5 36 96-133 6-41 (47)
46 2cpw_A CBL-interacting protein 91.8 0.16 5.3E-06 33.6 3.4 41 93-135 18-59 (64)
47 2lbc_A Ubiquitin carboxyl-term 91.3 0.31 1.1E-05 35.2 5.0 41 93-135 77-117 (126)
48 2lva_A Ubiquitin carboxyl-term 90.2 0.045 1.5E-06 41.8 0.0 39 98-136 22-60 (129)
49 1vek_A UBP14, ubiquitin-specif 90.7 0.51 1.8E-05 32.7 5.4 45 92-138 27-72 (84)
50 1ufz_A Hypothetical protein BA 86.5 0.99 3.4E-05 32.0 4.5 37 104-141 46-82 (83)
51 1tff_A Ubiquitin thiolesterase 85.9 0.061 2.1E-06 43.3 -2.3 18 36-54 215-232 (234)
52 2lbc_A Ubiquitin carboxyl-term 85.1 1.8 6.3E-05 31.1 5.5 42 93-136 2-44 (126)
53 2di0_A Activating signal coint 81.3 1.2 4.2E-05 30.6 3.1 42 97-138 16-57 (71)
54 2qsf_X RAD23, UV excision repa 80.2 1.9 6.5E-05 33.8 4.3 37 95-133 131-167 (171)
55 4ae4_A Ubiquitin-associated pr 79.4 2 6.9E-05 31.4 3.9 38 96-135 10-47 (118)
56 3k9o_A Ubiquitin-conjugating e 79.0 2 6.8E-05 33.2 4.0 36 96-133 165-200 (201)
57 3bq3_A Defective in cullin ned 78.4 2.3 7.9E-05 35.1 4.4 40 96-136 17-56 (270)
58 2zfy_A Ubiquitin thioesterase 77.6 0.2 6.9E-06 40.0 -2.1 15 36-51 219-233 (234)
59 3avx_A Elongation factor TS, e 75.1 0.51 1.8E-05 46.8 -0.4 40 93-133 4-43 (1289)
60 3k6g_A Telomeric repeat-bindin 73.8 6.5 0.00022 29.2 5.3 42 96-138 15-56 (111)
61 1oqy_A HHR23A, UV excision rep 73.2 1.9 6.4E-05 36.9 2.6 37 95-133 169-205 (368)
62 2ooa_A E3 ubiquitin-protein li 73.0 5.2 0.00018 26.1 4.1 37 96-134 13-49 (52)
63 2d9s_A CBL E3 ubiquitin protei 72.4 5.5 0.00019 26.1 4.1 39 96-136 11-49 (53)
64 1oqy_A HHR23A, UV excision rep 69.1 3.1 0.00011 35.5 3.1 41 94-136 325-365 (368)
65 2cos_A Serine/threonine protei 67.3 9.4 0.00032 25.0 4.5 46 92-139 7-53 (54)
66 3e46_A Ubiquitin-conjugating e 61.8 7.8 0.00027 31.5 4.0 36 96-133 217-252 (253)
67 4dbg_B Ring finger protein 31; 56.9 11 0.00036 29.6 3.8 33 98-131 106-138 (162)
68 2oo9_A E3 ubiquitin-protein li 55.5 18 0.00062 23.0 4.1 37 96-134 6-42 (46)
69 2juj_A E3 ubiquitin-protein li 54.5 15 0.00052 24.3 3.7 38 96-135 9-46 (56)
70 1q02_A Sequestosome 1; helical 43.0 21 0.00072 23.2 3.0 34 97-131 13-47 (52)
71 2l2d_A OTU domain-containing p 41.5 53 0.0018 22.5 4.9 38 97-135 20-57 (73)
72 2ooa_A E3 ubiquitin-protein li 39.9 33 0.0011 22.2 3.5 26 113-138 14-39 (52)
73 2gpe_A Bifunctional protein PU 38.8 25 0.00086 20.9 2.7 25 96-120 16-40 (52)
74 2ay0_A Bifunctional PUTA prote 38.3 24 0.00084 22.3 2.7 25 96-120 16-40 (58)
75 1pyl_A Ribonuclease; alpha-bet 35.3 10 0.00035 27.3 0.6 17 41-57 81-97 (97)
76 3e7l_A Transcriptional regulat 34.9 40 0.0014 20.9 3.3 23 109-131 20-42 (63)
77 2cpg_A REPA protein, transcrip 31.0 33 0.0011 19.5 2.3 25 96-120 15-39 (45)
78 2dae_A KIAA0733 protein; mitog 30.7 30 0.001 24.0 2.3 26 110-135 26-51 (75)
79 4g3o_A E3 ubiquitin-protein li 29.6 1E+02 0.0035 20.2 4.7 37 96-133 19-55 (58)
80 2c4b_A Barnase mcoeeti fusion; 28.5 18 0.00062 27.7 1.0 25 41-66 96-120 (143)
81 1lni_A RNAse SA, guanyl-specif 28.3 16 0.00054 26.3 0.6 17 41-57 80-96 (96)
82 3ihp_A Ubiquitin carboxyl-term 27.4 52 0.0018 30.7 4.0 28 108-135 732-759 (854)
83 1oai_A Nuclear RNA export fact 27.4 1.2E+02 0.0042 19.3 5.1 38 96-134 9-46 (59)
84 1umq_A Photosynthetic apparatu 26.3 61 0.0021 21.8 3.3 22 110-131 43-64 (81)
85 2jp7_A MRNA export factor MEX6 26.0 1.2E+02 0.004 19.4 4.4 40 96-136 8-47 (57)
86 2ejs_A Autocrine motility fact 24.6 1.5E+02 0.0051 19.3 5.0 39 96-135 15-53 (58)
87 4dbg_B Ring finger protein 31; 23.9 98 0.0033 24.1 4.4 31 105-135 72-102 (162)
88 1nri_A Hypothetical protein HI 20.6 34 0.0012 27.4 1.3 37 96-133 246-282 (306)
No 1
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=97.62 E-value=4.8e-06 Score=67.48 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCCccccCCCCCCCCCceee
Q 032215 36 AFIGSYHDGEHYNGVRLKEDSCIGSARPII 65 (145)
Q Consensus 36 ~LHISYH~GEHYnSVRri~DnsegPA~~~i 65 (145)
.+||+||+|+||||||.+.|+++.|+.|+-
T Consensus 143 ~I~L~Y~g~~HYdSL~~~~d~~~~~~~~~~ 172 (219)
T 3phu_A 143 AVNLLHSGQTHFDALRILPQFETDTREALS 172 (219)
T ss_dssp SEEEEEETTTEEEEEEECTTTCCSCCCCCC
T ss_pred eEEEEECCCcCchhheECCCCCCCCCcchh
Confidence 578999999999999999999999998843
No 2
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=97.46 E-value=7.2e-06 Score=64.42 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=20.7
Q ss_pred HHHHHhcCCCCCCccccCCCCCCCCCceee
Q 032215 36 AFIGSYHDGEHYNGVRLKEDSCIGSARPII 65 (145)
Q Consensus 36 ~LHISYH~GEHYnSVRri~DnsegPA~~~i 65 (145)
.+||+||+|+||||||.+.|+++.++.++.
T Consensus 143 ~I~L~Y~g~~HYdsl~~~~~~~~~~~~~~~ 172 (185)
T 3phx_A 143 AVNLLHSGQTHFDALRILPQFETDTREALS 172 (185)
T ss_dssp SEEEEEETTTEEEEEEECGGGC--------
T ss_pred EEEEEECCCcCchhceECCCCCCCCccccc
Confidence 578999999999999999999998887743
No 3
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.30 E-value=0.00036 Score=47.40 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=38.2
Q ss_pred CcCchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 91 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 91 d~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
..+....|++++..||.. ..-.+++|++.+||++.||++|-...
T Consensus 6 ~~it~~~Vk~LRe~TGag-~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYS-FVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp SCCCCHHHHHHHHHHCCC-HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 445557899999999987 88899999999999999999997543
No 4
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.03 E-value=0.0008 Score=49.64 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=36.0
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
+.|++||.-|||+ -+.++.+|.+++||++.||++|+...
T Consensus 41 ekVk~L~EmtG~s-eeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKN-QDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCC-HHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHhhCCC-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 6799999999998 78899999999999999999999665
No 5
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.0017 Score=44.17 Aligned_cols=43 Identities=21% Similarity=0.134 Sum_probs=37.9
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCCc
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~e 138 (145)
.+++.+..-+-=-|.+.|+.+|++++||+|+||+.|++.+...
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 6778888877777999999999999999999999999988544
No 6
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.88 E-value=0.0016 Score=43.08 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=36.2
Q ss_pred hhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCC
Q 032215 95 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 137 (145)
Q Consensus 95 ~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~ 137 (145)
++.++....-+-=-|.+.|+.+|++++||+|+||+.|+.....
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 3566777776666789999999999999999999999998744
No 7
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.75 E-value=0.0029 Score=39.75 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.8
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
..+++.+. -|.+|-..++++|...+||++.||++|++
T Consensus 9 ~~i~~L~~-MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 9 HQLRQLND-MGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 45666665 48889999999999999999999999984
No 8
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.61 E-value=0.0031 Score=40.91 Aligned_cols=39 Identities=33% Similarity=0.396 Sum_probs=33.6
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
..+++.+.- |.+|-..++++|...+||++.||++|+...
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 566666654 999999999999999999999999999754
No 9
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.58 E-value=0.0025 Score=40.43 Aligned_cols=34 Identities=29% Similarity=0.194 Sum_probs=32.1
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIE 129 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe 129 (145)
+.+.++++-||++|+...++.|+..+.|+++|+-
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 6789999999999999999999999999999985
No 10
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.57 E-value=0.0041 Score=41.01 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=32.2
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
..+++.+.= |.+|-+.++++|...+||++.||++|+.
T Consensus 19 ~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 466666654 8899999999999999999999999986
No 11
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.44 E-value=0.0042 Score=36.55 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=30.2
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 132 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Ll 132 (145)
+.|+++|.- |.+ .+.++++|...+||++.|+++|+
T Consensus 6 ~~i~~L~~m-Gf~-~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 6 SKIAQLVSM-GFD-PLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHT-TCC-HHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHc-CCC-HHHHHHHHHHcCCCHHHHHHHHC
Confidence 578888886 765 68889999999999999999984
No 12
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.31 E-value=0.0081 Score=38.42 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=32.3
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 134 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~ 134 (145)
..+++.+. -|-+|-..++++|...+||++.||++|+.-
T Consensus 13 ~~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 13 QQLEQLNS-MGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 45666665 487799999999999999999999999874
No 13
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.31 E-value=0.0035 Score=45.56 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=34.1
Q ss_pred cCchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHH
Q 032215 92 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 131 (145)
Q Consensus 92 ~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~L 131 (145)
.++++.|+.||..|||+ -+..+++|++++||+-.||.+|
T Consensus 63 ~i~~edi~lv~~q~~vs-~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGAS-REDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 46668899999999999 4667799999999999999876
No 14
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.24 E-value=0.0071 Score=41.84 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=33.3
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 134 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~ 134 (145)
..+++++.- |.+|-+.++++|...+||++.||++|+.-
T Consensus 31 ~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 31 QELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 567777764 88899999999999999999999999964
No 15
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.0067 Score=40.72 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=36.9
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
+.++++|.-|||.|....++.|+..+.|++.||...+...
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 6799999999988999999999999999999999888754
No 16
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=96.17 E-value=0.00037 Score=54.98 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=15.6
Q ss_pred HHHHHhcCCCCCCcccc
Q 032215 36 AFIGSYHDGEHYNGVRL 52 (145)
Q Consensus 36 ~LHISYH~GEHYnSVRr 52 (145)
.|+|+||+|+||||||-
T Consensus 165 ~I~L~Y~~~~HYnSv~~ 181 (185)
T 3pfy_A 165 PIRVSYHRNIHYNSVVN 181 (185)
T ss_dssp CEEEEEETTTEEEEEEC
T ss_pred EEEEEECCCCCcccccC
Confidence 58999999999999985
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.15 E-value=0.015 Score=38.60 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=36.4
Q ss_pred cCchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCCc
Q 032215 92 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 92 ~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~e 138 (145)
++++++|++++. -| ++-..++++|..++||++.|++||+.-....
T Consensus 7 ~~~~~~I~~L~~-MG-F~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 7 GVDEKALKHITE-MG-FSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SSCHHHHHHHHT-TT-CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 355578888876 35 5688899999999999999999999876443
No 18
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.12 E-value=0.01 Score=35.97 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.4
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+.|++.+. -| .+-..++++|...+||++.|++||+.
T Consensus 6 ~~i~~L~~-MG-F~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MG-FTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 56777776 36 56789999999999999999999984
No 19
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=96.05 E-value=0.012 Score=35.70 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=33.3
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+.+++++.-||| +....++.|+..+.|++.||...+.
T Consensus 7 ~~i~~F~~iTg~-~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAVTGA-EEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHTCC-CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 578999999999 5888999999999999999987664
No 20
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.00 E-value=0.0089 Score=38.15 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=32.0
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
..+++.+. -|-+|-..++++|...+||++.||++|+.
T Consensus 14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56777765 48879999999999999999999999974
No 21
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.83 E-value=0.015 Score=39.93 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=34.1
Q ss_pred hhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 95 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 95 ~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
++.|+++|. -| ++-..++++|...+||+|.|++||+.-+.
T Consensus 30 ee~I~~L~e-MG-F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 30 EEQIQKLVA-MG-FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp HHHHHHHHT-TT-CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 367888887 47 67999999999999999999999997544
No 22
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.016 Score=38.15 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=35.7
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
+.|+++|.-|||. ....++.|+..++|++.||...+....
T Consensus 17 e~i~qF~~iTg~~-~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 17 GLIQQFTTITGAS-ESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHTCCC-HHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 6799999999998 888899999999999999998876553
No 23
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.78 E-value=0.011 Score=40.36 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=32.0
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
..+++.+. -|=+|-+.+.++|.+.+|||+.||++|+.-.
T Consensus 21 ~ql~qL~~-MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 21 KEMECLQA-MGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34555544 4778999999999999999999999999864
No 24
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.74 E-value=0.016 Score=36.45 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=30.8
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+.|++++. -|. +-..++.+|...+||+|.|++||+.
T Consensus 10 ~~i~~L~~-MGF-~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 10 TMLTEIMS-MGY-ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHH-TTC-CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-cCC-CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56777665 374 7899999999999999999999987
No 25
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.71 E-value=0.023 Score=37.25 Aligned_cols=45 Identities=7% Similarity=0.226 Sum_probs=36.3
Q ss_pred CcCchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCC
Q 032215 91 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 137 (145)
Q Consensus 91 d~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~ 137 (145)
..+++..|++++. -|. +.+.++.+|...+||++.|++||+.-...
T Consensus 6 ~~~~~~~v~~L~~-MGF-~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 6 SGPPEDCVTTIVS-MGF-SRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCCCHHHHHHHHH-HTC-CHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3455578888887 375 47999999999999999999999986643
No 26
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=95.59 E-value=0.0024 Score=42.17 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=26.1
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
..++.+..=+-=-|.+.|+.+|++++|++|+||++||+.+
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms 53 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS 53 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 4455555555556999999999999999999999999875
No 27
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.26 E-value=0.046 Score=35.10 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=30.4
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 134 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~ 134 (145)
+.++..+.=+==.+..-|+.+|+..+||+|.||..||.+
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 344544444333468889999999999999999999998
No 28
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=95.19 E-value=0.0017 Score=51.60 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=17.0
Q ss_pred HHHHHhcCCCCCCccccCCCCCC
Q 032215 36 AFIGSYHDGEHYNGVRLKEDSCI 58 (145)
Q Consensus 36 ~LHISYH~GEHYnSVRri~Dnse 58 (145)
.++|+|| |+||||||.-.|.+.
T Consensus 124 ~I~L~Y~-g~HYdsl~~~~d~~~ 145 (212)
T 3by4_A 124 YILILFN-GIHYDSLTMNEFKTV 145 (212)
T ss_dssp EEEEEEC-SSCEEEEEETTTBCC
T ss_pred eEEEEEc-CCcceEEecCCCccc
Confidence 5789998 999999999444333
No 29
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.12 E-value=0.044 Score=37.24 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=33.6
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
+++..|++.+.= | .+...++++|...+||++.|++||+.-.
T Consensus 28 ~~~~~v~~L~~M-G-F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 28 IDQSSVDTLLSF-G-FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp SCHHHHHHHHHH-T-CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHc-C-CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 445778777763 5 4689999999999999999999999744
No 30
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.79 E-value=0.067 Score=35.33 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=34.4
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHh-CCChHHHHHHHHHHhCC
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQV-GGDVDAAIEFLIAEQGT 137 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~-~gdvDaAIe~Lla~~~~ 137 (145)
+++..|+++|. -|-+ ...++++|... ++|+|.|++||+.-...
T Consensus 8 ~~~~~v~~L~~-MGF~-~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 8 AELTALESLIE-MGFP-RGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCCHHHHHHT-TTCC-HHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHH-cCCC-HHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 34467888886 4754 68999999999 79999999999986543
No 31
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.78 E-value=0.035 Score=40.80 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=31.1
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 134 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~ 134 (145)
..+++.. .-|=+|-..++++|...+||++.||++|+.-
T Consensus 68 ~qL~qL~-eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 68 PQLQQLR-DMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3454444 4587898999999999999999999999964
No 32
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.49 E-value=0.086 Score=37.14 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=34.7
Q ss_pred chhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 94 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 94 ~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
.++.|+++|.= | ++-..++.+|...+||++.|++||+.-.+
T Consensus 29 ~ee~I~~Lv~M-G-F~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYM-G-FDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHH-S-CCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 44788888874 6 57899999999999999999999998654
No 33
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.33 E-value=0.1 Score=35.41 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=34.9
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHhCC-ChHHHHHHHHHHhCC
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGT 137 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~g-dvDaAIe~Lla~~~~ 137 (145)
+++..|++.|. -|- +...++++|...+| |+|.|++||+.-..-
T Consensus 8 ~~e~~v~~L~~-MGF-~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 8 LDESVIIQLVE-MGF-PMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp SCHHHHHHHHH-HSC-CHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHH-cCC-CHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 45577888877 365 47999999999997 899999999987643
No 34
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.27 E-value=0.1 Score=36.37 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=36.1
Q ss_pred CcCchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 91 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 91 d~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
..+++..+++.|. -|- +...++++|...++|++.|++||++-..
T Consensus 26 ~~~~e~~i~~L~~-MGF-~~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 26 ERVDEAALRQLTE-MGF-PENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp SSCCHHHHHHHHH-HTC-CHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHH-cCC-CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3466678888887 364 5699999999999999999999998654
No 35
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.12 E-value=0.058 Score=35.51 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=32.3
Q ss_pred HHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCCc
Q 032215 101 VMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 101 Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~e 138 (145)
-...-|=.|.++-.++|...+||+++||+.|++....+
T Consensus 15 ~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 15 HLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp HHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred HHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 34455888999999999999999999999999876543
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.06 E-value=0.061 Score=33.12 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=31.0
Q ss_pred cCchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 92 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 92 ~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
.++++.+++.+. -|-+ .+.++.+|...+ |+|.|++||+.
T Consensus 7 ~~~~~~v~~L~~-MGF~-~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MGFT-REHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp SSCHHHHHHHHH-HHCC-HHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCCHHHHHHHHH-cCCC-HHHHHHHHHHcC-CHHHHHHHHHc
Confidence 445577888877 3654 588999999995 99999999984
No 37
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=93.80 E-value=0.063 Score=43.13 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=34.1
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
..|++....||.. ..-.+.+|.+.+||+|.||++|-.
T Consensus 5 ~~VKeLRe~TGag-mmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 5 ELIKKLREATGAG-MMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5789999999988 888999999999999999999975
No 38
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=93.63 E-value=0.066 Score=44.95 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=35.1
Q ss_pred hhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 95 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 95 ~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+..|++....||.. ..-.+.+|.+.+||+|.||++|..
T Consensus 5 a~~VKeLRe~TGag-mmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTGYS-FINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 36799999999987 888999999999999999999986
No 39
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.62 E-value=0.079 Score=35.42 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=34.4
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
+.+.++|.-|||. ....++.|+..++|+|.||...+....
T Consensus 19 ~~i~qF~~iTg~~-~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGCA-ADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 5689999999996 666899999999999999998876543
No 40
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.39 E-value=0.086 Score=37.31 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=36.2
Q ss_pred hHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCCc
Q 032215 97 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 97 ~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~e 138 (145)
...+...-||..|+....++|++-+||+..||.+|-.++-.+
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~ 68 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKT 68 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccC
Confidence 346666789999999999999999999999999998876443
No 41
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.34 E-value=0.078 Score=37.18 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=34.2
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
+++..|++++. -|. +...++++|...++|+|.|++||+.-..
T Consensus 20 ~n~~~I~qL~~-MGF-~~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 20 IMSRLIKQLTD-MGF-PREPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHH-HTC-CHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred cCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 33577888877 476 4788999999999999999999998653
No 42
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=93.17 E-value=0.092 Score=38.65 Aligned_cols=39 Identities=31% Similarity=0.360 Sum_probs=31.2
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
..+.+.+. -| .+..+|+.+|...+||+|.|+++|++.-+
T Consensus 78 ~~v~~L~e-MG-F~~~~a~~AL~~~~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 78 QLMSKFKE-MG-FELKDIKEVLLLHNNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHH-TT-CCHHHHHHHHHHTTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 34555554 35 68999999999999999999999998754
No 43
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.05 E-value=0.24 Score=32.81 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=33.5
Q ss_pred chhhHHHHHhcCCCCChHHHHHHHHHhCC-ChHHHHHHHHHHhCC
Q 032215 94 NAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGT 137 (145)
Q Consensus 94 ~~~~V~~Vm~~TGC~D~~LIrq~Le~~~g-dvDaAIe~Lla~~~~ 137 (145)
++..+++.+. -| .+.+.++++|...++ |++.|++||++-..-
T Consensus 9 ~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 9 SPSLLEPLLA-MG-FPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp SCSSHHHHHH-TS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 3356777776 46 567999999999987 999999999987643
No 44
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.65 E-value=0.13 Score=34.97 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=33.6
Q ss_pred chhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCC
Q 032215 94 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 137 (145)
Q Consensus 94 ~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~ 137 (145)
+++.|..+++ -| ++.+.++.+|++.+||+|.|+++|++-..+
T Consensus 19 e~e~V~~Lvs-MG-Fs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVN-MG-YSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHH-HH-CCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3456777775 35 568899999999999999999999986543
No 45
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=91.78 E-value=0.067 Score=33.47 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=30.0
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
++|++++.- | .+-.+++++|.++++|++.|..+|++
T Consensus 6 eaI~rL~~m-G-F~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKAL-G-FPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTT-T-CCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 566666653 3 67899999999999999999999975
No 46
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.76 E-value=0.16 Score=33.59 Aligned_cols=41 Identities=17% Similarity=0.464 Sum_probs=32.7
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHhCC-ChHHHHHHHHHHh
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQ 135 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~g-dvDaAIe~Lla~~ 135 (145)
.++..|++.+. -|- +...++++|...+| |+|.|++||+.-.
T Consensus 18 ~~e~~i~~L~~-MGF-~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 18 KHGSALDVLLS-MGF-PRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp SCCCHHHHHHH-HTC-CHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred CCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 33467877776 364 57999999999998 9999999998643
No 47
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=91.34 E-value=0.31 Score=35.24 Aligned_cols=41 Identities=7% Similarity=0.291 Sum_probs=34.0
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
.++..|++.+. -|++ ...++++|...+||++.|++||+.-.
T Consensus 77 ~~e~~v~~L~~-MGF~-~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQ-RNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp CCHHHHHHHHH-HTSC-HHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred cCHHHHHHHHH-cCCC-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34467888887 4876 79999999999999999999998643
No 48
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.20 E-value=0.045 Score=41.78 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 98 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 98 V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
+.+...=||..|++.++++|++.+||+..||.+|-.++-
T Consensus 22 LNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~ 60 (129)
T 2lva_A 22 LNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERV 60 (129)
Confidence 345555799999999999999999999999999987753
No 49
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=90.72 E-value=0.51 Score=32.71 Aligned_cols=45 Identities=11% Similarity=0.301 Sum_probs=34.6
Q ss_pred cCchhhHHHHHhcCCCCChHHHHHHHHHhC-CChHHHHHHHHHHhCCc
Q 032215 92 IINAGSIKLVMAGSGCENSEKVEEVLLQVG-GDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 92 ~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~-gdvDaAIe~Lla~~~~e 138 (145)
.+++..|+++|. -|-+ ...++++|...+ +|++.|++||+.-..-.
T Consensus 27 ~~~e~~v~~L~~-MGF~-~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 27 VANEEIVAQLVS-MGFS-QLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CCCHHHHHHHHH-HTCC-HHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHH-cCCC-HHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 345578888887 4754 688889988885 79999999999876543
No 50
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=86.46 E-value=0.99 Score=31.99 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=28.0
Q ss_pred cCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCCcccc
Q 032215 104 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYS 141 (145)
Q Consensus 104 ~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~e~~~ 141 (145)
|-.|++..|| ++....+||++.|++++|.+...-+++
T Consensus 46 GdsV~e~~Lv-~ailk~dfD~ekALd~vL~~~~~~~s~ 82 (83)
T 1ufz_A 46 GDAVPDDILT-EAILKHKFDVQKALSVVLEQDGSGPSS 82 (83)
T ss_dssp TTTSCHHHHH-HHHHHTTSCHHHHHHHHHHHHHTSSCC
T ss_pred cccCCHHHHH-HHHHHhcCCHHHHHHHHHhccccccCC
Confidence 3367877777 455678999999999999987654443
No 51
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=85.87 E-value=0.061 Score=43.25 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.1
Q ss_pred HHHHHhcCCCCCCccccCC
Q 032215 36 AFIGSYHDGEHYNGVRLKE 54 (145)
Q Consensus 36 ~LHISYH~GEHYnSVRri~ 54 (145)
.+||+||.| |||+++..+
T Consensus 215 ~I~LlY~pg-HYdily~~~ 232 (234)
T 1tff_A 215 SVYLLYKTS-HYNILYAAD 232 (234)
T ss_dssp SEEEEEETT-EEEEEEECC
T ss_pred eEEEEECCC-CceecccCC
Confidence 379999987 999998753
No 52
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=85.10 E-value=1.8 Score=31.09 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=31.7
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHhCC-ChHHHHHHHHHHhC
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQG 136 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~g-dvDaAIe~Lla~~~ 136 (145)
+++..+++.+. -| ++...++.+|...++ |++.|+++|++.+.
T Consensus 2 ~d~~~l~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 2 IDESSVMQLAE-MG-FPLEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp CCTHHHHHHHT-TS-SCCHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 34456666665 34 356889999999966 99999999999764
No 53
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.28 E-value=1.2 Score=30.57 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=30.5
Q ss_pred hHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCCc
Q 032215 97 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 97 ~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~e 138 (145)
.|.+|..-+-=--..-|+.+|..+++|+|.+|.+|+..+-+.
T Consensus 16 ~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~LPp 57 (71)
T 2di0_A 16 LISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERLAP 57 (71)
T ss_dssp HHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCCCH
Confidence 344555433223466788999999999999999999876443
No 54
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=80.20 E-value=1.9 Score=33.76 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=32.4
Q ss_pred hhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 95 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 95 ~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
.++|++++.- | .+-.+|.++|.++++|.+.|..||+.
T Consensus 131 ~eaI~rL~~m-G-F~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 131 DQAISRLCEL-G-FERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHTT-T-CCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3678888775 4 89999999999999999999999985
No 55
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=79.38 E-value=2 Score=31.39 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=30.3
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
+.|++++. -| +....++.+|...++|+|+|++||++-.
T Consensus 10 ~~v~~l~~-MG-Fp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 10 QCVETVVN-MG-YSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHH-TT-CCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 45666655 13 4688899999999999999999999864
No 56
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=78.97 E-value=2 Score=33.20 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=30.1
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+.|++.+.- | .|-..++++|...++|++.|+++|+.
T Consensus 165 ekV~~l~~M-G-f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 165 KKIENLCAM-G-FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHTT-T-CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 677777663 4 46788999999999999999999985
No 57
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=78.37 E-value=2.3 Score=35.11 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=34.7
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
+.++++|+-|||. ....+..|++++.|++.|+...++...
T Consensus 17 ~~i~qF~~iTg~~-~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 17 EAIESFTSLTKCD-PKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 5799999999998 456788999999999999998887653
No 58
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=77.60 E-value=0.2 Score=40.03 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.9
Q ss_pred HHHHHhcCCCCCCccc
Q 032215 36 AFIGSYHDGEHYNGVR 51 (145)
Q Consensus 36 ~LHISYH~GEHYnSVR 51 (145)
.+||.||.| |||++.
T Consensus 219 ~I~LlY~pg-HYdiLy 233 (234)
T 2zfy_A 219 KVYLLYRPG-HYDILY 233 (234)
T ss_dssp SEEEEEETT-EEEEEE
T ss_pred eEEEEECCC-CcccCC
Confidence 479999988 999985
No 59
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=75.15 E-value=0.51 Score=46.76 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=34.1
Q ss_pred CchhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 93 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 93 ~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+.+..|++....||.. ..-.+.+|.+.+||+|.||++|-.
T Consensus 4 ita~~VKeLRe~TGag-mmdCKKAL~e~~GD~ekAie~LRk 43 (1289)
T 3avx_A 4 ITASLVKELRERTGAG-MMDCKKALTEANGDIELAIENMRK 43 (1289)
T ss_dssp SCCSCTHHHHTTTCCC-TTTTTTTTTTTTTCHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3446799999999987 666779999999999999999863
No 60
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=73.81 E-value=6.5 Score=29.18 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=35.4
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhCCc
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~~e 138 (145)
..+++.|..|.- |+--|.++|..++||+++|-.||+.-+.++
T Consensus 15 ~~i~~lMeef~~-DL~sVTqAlLK~SGel~at~~fL~~~~r~d 56 (111)
T 3k6g_A 15 KIIRQLMEKFNL-DLSTVTQAFLKNSGELEATSAFLASGQRAD 56 (111)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHTTTCHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHccccHHHHHHHHhCCCcCC
Confidence 456788888775 899999999999999999999999865433
No 61
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=73.17 E-value=1.9 Score=36.91 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred hhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 95 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 95 ~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+..|+++|.= | ++-+.|+.+|.+.+||+|.|++||+.
T Consensus 169 ~~~i~~l~~M-G-f~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 169 ETMLTEIMSM-G-YERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHTT-T-CCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred HHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3678888763 4 78899999999999999999999974
No 62
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=73.02 E-value=5.2 Score=26.09 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=31.1
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 134 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~ 134 (145)
+.|++.|.- | +|-+.+.++|...+||+|.|-..|+..
T Consensus 13 ~~Ia~Lm~m-G-Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGE-G-YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHT-T-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 677777773 3 568889999999999999999999875
No 63
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.43 E-value=5.5 Score=26.07 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=31.6
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
..|++.|.- | +|-+.|.++|...+||+|.|-..|+..-.
T Consensus 11 ~~I~~L~~l-G-F~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 11 SEIERLMSQ-G-YSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp HHHHHHHHH-T-CCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 567777763 3 57888999999999999999999987643
No 64
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=69.11 E-value=3.1 Score=35.54 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=33.8
Q ss_pred chhhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 94 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 94 ~~~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
+.++|+.++.- +++-.+++++|.++++|++.|.+||+.-..
T Consensus 325 e~eaI~rL~~m--GF~~~~a~~al~a~~~n~e~A~~~L~~~~~ 365 (368)
T 1oqy_A 325 EKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQNF 365 (368)
T ss_dssp THHHHHHHHHH--TCCSHHHHHHTSSSSSCSSHHHHHHHHHHC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhhCcC
Confidence 34677777654 378999999999999999999999997643
No 65
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=67.32 E-value=9.4 Score=25.05 Aligned_cols=46 Identities=24% Similarity=0.495 Sum_probs=32.7
Q ss_pred cCchhhHHHHHhcCCCCChHHHHHHHHHhCC-ChHHHHHHHHHHhCCcc
Q 032215 92 IINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTEE 139 (145)
Q Consensus 92 ~~~~~~V~~Vm~~TGC~D~~LIrq~Le~~~g-dvDaAIe~Lla~~~~e~ 139 (145)
++....++..+. -||. -+++..+|..-++ .+++|++||.-..++++
T Consensus 7 ~vn~qmlq~L~e-MGFd-~erae~Alk~Tg~~Gle~AmewL~k~~~~~~ 53 (54)
T 2cos_A 7 GVNRQMLQELVN-AGCD-QEMAGRALKQTGSRSIEAALEYISKMSGPSS 53 (54)
T ss_dssp SCCHHHHHHHHH-HHCC-HHHHHHHHHHHTSCCHHHHHHHHHHHSCSCC
T ss_pred hhHHHHHHHHHH-cCCC-HHHHHHHHHHhCcccHHHHHHHHHHhcCCCC
Confidence 344344444444 3776 6788888888766 79999999999887764
No 66
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=61.84 E-value=7.8 Score=31.49 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=29.6
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+.|++++.- | .+-..++++|..+++|++.|+++|+.
T Consensus 217 ~~v~~l~~m-g-f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCAA-G-FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHT-T-CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 567766663 3 46888899999999999999999985
No 67
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=56.92 E-value=11 Score=29.62 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHH
Q 032215 98 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 131 (145)
Q Consensus 98 V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~L 131 (145)
++++|+ -|=++..-+.++|.+.+||++.|+--|
T Consensus 106 ~~eL~s-~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 106 VQELQS-LGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHH-TTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHh-cCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 455555 488889999999999999999998655
No 68
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=55.50 E-value=18 Score=23.02 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=28.4
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 134 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~ 134 (145)
.++...|+- | +|.+.|+++|.-.++||+.|-..|+..
T Consensus 6 ~~I~~L~s~-G-f~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 6 SEIENLMSQ-G-YSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHT-T-BCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 345444442 2 678999999999999999999988864
No 69
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=54.51 E-value=15 Score=24.27 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=30.7
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
+.|...|+- | +|.+.+.++|...++||+.|-..|+..-
T Consensus 9 ~~Ia~L~sm-G-fsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 9 SEIENLMSQ-G-YSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHHTT-T-CCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 456666652 3 5789999999999999999999998764
No 70
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=43.00 E-value=21 Score=23.22 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=23.9
Q ss_pred hHHHHHhcCCCCCh-HHHHHHHHHhCCChHHHHHHH
Q 032215 97 SIKLVMAGSGCENS-EKVEEVLLQVGGDVDAAIEFL 131 (145)
Q Consensus 97 ~V~~Vm~~TGC~D~-~LIrq~Le~~~gdvDaAIe~L 131 (145)
++++.+ +-|=+|- .-..+.|+..+||+.+|++.|
T Consensus 13 al~qMl-~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 13 SLSQML-SMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHH-TTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 444433 3455533 345689999999999999976
No 71
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=41.50 E-value=53 Score=22.52 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=32.2
Q ss_pred hHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 97 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 97 ~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
.+..+..+|||. ..|.|..|+--+-|+-+|..-.-+.+
T Consensus 20 vls~fvrstgae-pgLaRDlleGKnWDl~AAL~D~eqLr 57 (73)
T 2l2d_A 20 VLSDFVRSTGAE-PGLARDLLEGKNWDLTAALSDYEQLR 57 (73)
T ss_dssp HHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-cchhHHhhccCCccHhHHhhhHHHHH
Confidence 347888899997 88899999999999999987665555
No 72
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=39.91 E-value=33 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=21.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhCCc
Q 032215 113 VEEVLLQVGGDVDAAIEFLIAEQGTE 138 (145)
Q Consensus 113 Irq~Le~~~gdvDaAIe~Lla~~~~e 138 (145)
--+.|.+.+++-++||.+|.+-++-.
T Consensus 14 ~Ia~Lm~mGFsr~~ai~AL~~a~nnv 39 (52)
T 2ooa_A 14 KIAKLMGEGYAFEEVKRALEIAQNNV 39 (52)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence 33679999999999999998877543
No 73
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=38.82 E-value=25 Score=20.93 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=21.8
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQV 120 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~ 120 (145)
..++.+...+||+-..+|++++.+.
T Consensus 16 ~~l~~lA~~~~rs~s~lir~Ai~~y 40 (52)
T 2gpe_A 16 ERIKSAATRIDRTPHWLIKQAIFSY 40 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678889999999999999998776
No 74
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=38.35 E-value=24 Score=22.27 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=21.9
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQV 120 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~ 120 (145)
+.++.+...+||+-..+|++++.+.
T Consensus 16 ~rL~~lA~~~~rs~s~lireAi~~y 40 (58)
T 2ay0_A 16 ERIKSAATRIDRTPHWLIKQAIFSY 40 (58)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5678889999999999999998765
No 75
>1pyl_A Ribonuclease; alpha-beta structure, hydrolase; 1.51A {Streptomyces aureofaciens} SCOP: d.1.1.2 PDB: 1py3_A 3d4a_A* 3d5g_A 3d5i_A* 3dgy_A* 3dh2_A*
Probab=35.25 E-value=10 Score=27.29 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=13.5
Q ss_pred hcCCCCCCccccCCCCC
Q 032215 41 YHDGEHYNGVRLKEDSC 57 (145)
Q Consensus 41 YH~GEHYnSVRri~Dns 57 (145)
|=-.+||.|+++|.+.|
T Consensus 81 YyT~DHY~sF~~i~~~~ 97 (97)
T 1pyl_A 81 YWSPDHYATFQEIDPRC 97 (97)
T ss_dssp EEESSTTSSCEEEETTC
T ss_pred EECCChhhcceecccCC
Confidence 55579999999997654
No 76
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.89 E-value=40 Score=20.87 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHhCCChHHHHHHH
Q 032215 109 NSEKVEEVLLQVGGDVDAAIEFL 131 (145)
Q Consensus 109 D~~LIrq~Le~~~gdvDaAIe~L 131 (145)
.-+.|.++|+.++||+..|-..|
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 35689999999999998776544
No 77
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=31.00 E-value=33 Score=19.49 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=20.6
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQV 120 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~ 120 (145)
+.+.+....+|++-.++|+++|...
T Consensus 15 ~~Ld~~a~~~g~srS~~ir~ai~~~ 39 (45)
T 2cpg_A 15 ENLEKMAREMGLSKSAMISVALENY 39 (45)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567788889999999999998764
No 78
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.67 E-value=30 Score=24.03 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 110 SEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 110 ~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
-..|.+.+.++++|.|+.|.+|-+|.
T Consensus 26 d~VVsqc~~qN~~Nl~aC~~~L~qES 51 (75)
T 2dae_A 26 EVVVSRCMLQNNNNLDACCAVLSQES 51 (75)
T ss_dssp HHHHHHHHTTTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 45677888899999999999999887
No 79
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=29.58 E-value=1e+02 Score=20.18 Aligned_cols=37 Identities=8% Similarity=-0.061 Sum_probs=28.1
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
+.+++|-.-+==-..+.|+.-|+.. |+||++|+=+++
T Consensus 19 ~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 19 AMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 4556666554445788999999876 999999998875
No 80
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=28.51 E-value=18 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=19.1
Q ss_pred hcCCCCCCccccCCCCCCCCCceeee
Q 032215 41 YHDGEHYNGVRLKEDSCIGSARPIII 66 (145)
Q Consensus 41 YH~GEHYnSVRri~DnsegPA~~~ii 66 (145)
|=-.+||.|+++|..++.+ -.|+|.
T Consensus 96 YyT~DHY~sF~~I~~~~g~-~cp~i~ 120 (143)
T 2c4b_A 96 YKTTDAYQTFTKIRSSSMG-VCPKIL 120 (143)
T ss_dssp EEESSTTSCCEEEECCCTT-CCCSCC
T ss_pred EEeCChhhceeEeccCCCC-CCchhh
Confidence 5567999999999888876 455443
No 81
>1lni_A RNAse SA, guanyl-specific ribonuclease SA; hydrolase; 1.00A {Streptomyces aureofaciens} SCOP: d.1.1.2 PDB: 1c54_A 1ay7_A 1rge_A* 1rgf_A 1rgg_A 1rgh_A 1t2h_A 1i70_A 1i8v_A 1ynv_X 1ucl_A 1ucj_A 1uck_A 1uci_A 1t2i_A 1box_A 1gmp_A* 1gmq_A 1gmr_A* 1rsn_A* ...
Probab=28.26 E-value=16 Score=26.26 Aligned_cols=17 Identities=35% Similarity=0.895 Sum_probs=13.2
Q ss_pred hcCCCCCCccccCCCCC
Q 032215 41 YHDGEHYNGVRLKEDSC 57 (145)
Q Consensus 41 YH~GEHYnSVRri~Dns 57 (145)
|=-.+||.|+++|.+.|
T Consensus 80 YYT~DHY~sF~~i~~~~ 96 (96)
T 1lni_A 80 YYTGDHYATFSLIDQTC 96 (96)
T ss_dssp EEESSTTSCCEEEETTC
T ss_pred EECCChhhCceeccCCC
Confidence 55679999999997543
No 82
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=27.44 E-value=52 Score=30.66 Aligned_cols=28 Identities=7% Similarity=0.259 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 108 ENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 108 ~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
.+.+..+.+|.+.+||++.||++|++-.
T Consensus 732 f~~~~a~~aL~~t~~~~eraidwlfs~~ 759 (854)
T 3ihp_A 732 FSRDQALKALRATNNSLERAVDWIFSHI 759 (854)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcCcHHHHHHhhhcCc
Confidence 5688889999999999999999999854
No 83
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.39 E-value=1.2e+02 Score=19.26 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=31.9
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 134 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~ 134 (145)
..|.+++..||=- .+=-+..|++++-|.+.|+......
T Consensus 9 ~mv~~~s~~Tgmn-~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 9 EMLQAFSTQSGMN-LEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4677888888865 7888889999999999999987664
No 84
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=26.25 E-value=61 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 032215 110 SEKVEEVLLQVGGDVDAAIEFL 131 (145)
Q Consensus 110 ~~LIrq~Le~~~gdvDaAIe~L 131 (145)
-+.|+++|+.++||+..|-..|
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHh
Confidence 4678899999999998776554
No 85
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=25.99 E-value=1.2e+02 Score=19.42 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=33.2
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHhC
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 136 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~~ 136 (145)
..|.+++..||=- ++--+..|++++-|.+.|+......++
T Consensus 8 ~mv~~~s~~T~Mn-~e~S~~cL~~n~Wd~~~A~~~F~~~~~ 47 (57)
T 2jp7_A 8 ELLNKLHLETKLN-AEYTFMLAEQSNWNYEVAIKGFQSSMN 47 (57)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHTTTCSHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4678888888865 888889999999999999988766544
No 86
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.61 E-value=1.5e+02 Score=19.25 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=29.6
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
..+++|..-+==-..+.|+.=|+..+ +||++|+=+|+-+
T Consensus 15 ~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 15 AMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 45566666544457889999997766 9999999998865
No 87
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=23.90 E-value=98 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHhCCChHHHHHHHHHHh
Q 032215 105 SGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 135 (145)
Q Consensus 105 TGC~D~~LIrq~Le~~~gdvDaAIe~Lla~~ 135 (145)
-|--+.+-.+++|...+||++.||...+..|
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R 102 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECVRTR 102 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHHHHH
Confidence 4555668899999999999999999988766
No 88
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=20.57 E-value=34 Score=27.40 Aligned_cols=37 Identities=22% Similarity=0.537 Sum_probs=10.6
Q ss_pred hhHHHHHhcCCCCChHHHHHHHHHhCCChHHHHHHHHH
Q 032215 96 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 133 (145)
Q Consensus 96 ~~V~~Vm~~TGC~D~~LIrq~Le~~~gdvDaAIe~Lla 133 (145)
.....|+..|||+.. .++++|+..+|+|--||..++.
T Consensus 246 r~~~~i~~~~~~~~~-~~~~~l~~~~~~~~~a~~~~~~ 282 (306)
T 1nri_A 246 RAVRIVMQATDCNKT-LAEQTLLEADQNAKLAIMMILS 282 (306)
T ss_dssp HHHHHHHHHSCCCC------------------------
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHhCCChHHHHHHHHh
Confidence 446678888999854 4778899999999999877644
Done!