BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032216
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|K Chain K, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|L Chain L, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|M Chain M, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|N Chain N, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|O Chain O, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|P Chain P, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|Q Chain Q, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|R Chain R, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|S Chain S, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|T Chain T, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 156
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
+ L G++TK + RFA+VVARFNE VT+ L+EGAL+TFKKYSV E+ IDVVWVPG++E+
Sbjct: 1 MNELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNED-IDVVWVPGAYEL 59
Query: 123 GVVAQQLGKSGKYTAVLCIGAVV 145
GV AQ LGKSGKY A++C+GAVV
Sbjct: 60 GVTAQALGKSGKYHAIVCLGAVV 82
>pdb|1VSW|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
Length = 153
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 5/81 (6%)
Query: 65 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV 124
HL G GL+ +VV RFNE +T LL GAL+ K++ V+E +IDV WVPG+FEI +
Sbjct: 6 HLVG-----TGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDIDVAWVPGAFEIPL 60
Query: 125 VAQQLGKSGKYTAVLCIGAVV 145
+A+++ SGKY AV+ +G V+
Sbjct: 61 IAKKMANSGKYDAVITLGTVI 81
>pdb|3MK3|A Chain A, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|B Chain B, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|C Chain C, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|D Chain D, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|E Chain E, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|F Chain F, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|G Chain G, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|H Chain H, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|I Chain I, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|J Chain J, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|K Chain K, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|L Chain L, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|M Chain M, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|N Chain N, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|O Chain O, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|P Chain P, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Q Chain Q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|R Chain R, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|S Chain S, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|T Chain T, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|U Chain U, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|V Chain V, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|W Chain W, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|X Chain X, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Y Chain Y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Z Chain Z, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|1 Chain 1, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|2 Chain 2, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|3 Chain 3, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|4 Chain 4, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|5 Chain 5, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|6 Chain 6, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|7 Chain 7, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|8 Chain 8, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|9 Chain 9, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|AA Chain a, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|BB Chain b, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|CC Chain c, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|DD Chain d, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|EE Chain e, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|FF Chain f, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|GG Chain g, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|HH Chain h, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|II Chain i, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|JJ Chain j, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|KK Chain k, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|LL Chain l, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|MM Chain m, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|NN Chain n, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|OO Chain o, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|PP Chain p, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|QQ Chain q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|RR Chain r, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|SS Chain s, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|TT Chain t, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|UU Chain u, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|VV Chain v, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|WW Chain w, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|XX Chain x, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|YY Chain y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|A Chain A, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|B Chain B, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|C Chain C, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|D Chain D, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|E Chain E, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|F Chain F, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|G Chain G, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|H Chain H, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|I Chain I, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|J Chain J, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|K Chain K, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|L Chain L, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|M Chain M, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|N Chain N, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|O Chain O, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|P Chain P, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Q Chain Q, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|R Chain R, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|S Chain S, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|T Chain T, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|U Chain U, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|V Chain V, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|W Chain W, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|X Chain X, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Y Chain Y, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Z Chain Z, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|1 Chain 1, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|2 Chain 2, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|3 Chain 3, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|4 Chain 4, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
Length = 156
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 77 RFALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFEIGVVAQQLGKSGKY 135
R A+ +ARFN+ + LL+GA++ + VK++NI VVWVPG++E+ + + L KSGKY
Sbjct: 14 RVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKY 73
Query: 136 TAVLCIGAVV 145
AV+ +G V+
Sbjct: 74 DAVVALGTVI 83
>pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|B Chain B, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|C Chain C, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|D Chain D, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|E Chain E, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|F Chain F, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|G Chain G, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|H Chain H, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|I Chain I, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|J Chain J, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|K Chain K, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|L Chain L, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|M Chain M, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|N Chain N, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|O Chain O, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|P Chain P, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Q Chain Q, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|R Chain R, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|S Chain S, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|T Chain T, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|U Chain U, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|V Chain V, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|W Chain W, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|X Chain X, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Y Chain Y, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Z Chain Z, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|1 Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|2 Chain 2, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|3 Chain 3, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|4 Chain 4, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1ZIS|A Chain A, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|B Chain B, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|C Chain C, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|D Chain D, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|E Chain E, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|F Chain F, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|G Chain G, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|H Chain H, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|I Chain I, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|J Chain J, Recombinant Lumazine Synthase (hexagonal Form)
Length = 154
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%)
Query: 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
GL+ +VV RFN+ +T LL GA + ++ V +IDV WVPG+FEI A+++ ++ K
Sbjct: 12 GLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKK 71
Query: 135 YTAVLCIGAVV 145
Y A++ +G V+
Sbjct: 72 YDAIITLGTVI 82
>pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|B Chain B, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|C Chain C, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|D Chain D, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|E Chain E, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1NQU|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQV|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQW|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQX|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
Length = 154
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
EGLRF +V +RFN + L+EGA++ ++ +EE+I +V VPGS+EI V A +L +
Sbjct: 11 EGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKE 70
Query: 134 KYTAVLCIGAVV 145
AV+ IG ++
Sbjct: 71 DIDAVIAIGVLI 82
>pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|B Chain B, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|C Chain C, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|D Chain D, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|E Chain E, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A58|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A59|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
Length = 159
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARYNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 74 ARNTYDAVIGIGVLI 88
>pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|B Chain B, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|C Chain C, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|D Chain D, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|E Chain E, Mutant Enzyme W63y Lumazine Synthase From S.pombe
Length = 159
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSYELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 74 ARNTYDAVIGIGVLI 88
>pdb|1KZ6|A Chain A, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|B Chain B, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|C Chain C, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|D Chain D, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|E Chain E, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
Length = 159
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSYELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 74 ARNTYDAVIGIGVLI 88
>pdb|1KYV|A Chain A, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|B Chain B, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|C Chain C, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|D Chain D, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|E Chain E, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYX|A Chain A, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|B Chain B, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|C Chain C, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|D Chain D, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|E Chain E, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYY|A Chain A, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|B Chain B, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|C Chain C, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|D Chain D, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|E Chain E, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
Length = 159
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 74 ARNTYDAVIGIGVLI 88
>pdb|1KZ9|A Chain A, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|B Chain B, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|C Chain C, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|D Chain D, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|E Chain E, Mutant Enzyme L119f Lumazine Synthase From S.pombe
Length = 159
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 74 ARNTYDAVIGIGVLI 88
>pdb|4GEF|A Chain A, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|B Chain B, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|C Chain C, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|D Chain D, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|E Chain E, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|F Chain F, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|G Chain G, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|H Chain H, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|I Chain I, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|J Chain J, Product Complex Of Lumazine Synthase From Candida Glabrata
Length = 179
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
LR ++ AR+N ++ L++GA++ VKEENI V VPGSFE+
Sbjct: 29 LRVGIIHARWNRVIIDALVKGAIDRMLSLGVKEENIIVETVPGSFEL 75
>pdb|2JFB|A Chain A, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|B Chain B, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|C Chain C, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|D Chain D, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|E Chain E, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|F Chain F, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|G Chain G, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|H Chain H, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|I Chain I, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|J Chain J, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|K Chain K, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|L Chain L, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|M Chain M, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|N Chain N, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|O Chain O, 3d Structure Of Lumazine Synthase From Candida Albicans
Length = 164
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 62 AVRHLTGFLTKNEG--LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119
AV+ L K +G LR ++ AR+N + L+ GA++ +++ VKEENI + VPGS
Sbjct: 2 AVKGLGEVDQKYDGSKLRIGILHARWNRKIIDALVAGAVKRLQEFGVKEENIIIETVPGS 61
Query: 120 FEI 122
FE+
Sbjct: 62 FEL 64
>pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|B Chain B, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|C Chain C, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|D Chain D, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|E Chain E, Mutant Enzyme W27g Lumazine Synthase From S.pombe
Length = 159
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 74 ARNTYDAVIGIGVLI 88
>pdb|1C41|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 200
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
LR +V AR+NE + + LL G VKE NI V VPGS+E+ + Q+L
Sbjct: 16 LRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRL 69
>pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|B Chain B, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|C Chain C, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|D Chain D, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|E Chain E, Lumazine Synthase From Saccharomyces Cerevisiae
Length = 168
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
+R ++ AR+N ++ L++GA+E V+E NI + VPGS+E+
Sbjct: 17 IRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYEL 63
>pdb|1W19|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W29|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|2C92|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C94|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C97|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C9B|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9D|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2VI5|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
Length = 160
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
G+R A+V + ++ + LL+GA + + + VV V G+ EI VVAQ+L ++
Sbjct: 17 GVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPT--VVRVLGAIEIPVVAQELARN-- 72
Query: 135 YTAVLCIGAVV 145
+ AV+ +G V+
Sbjct: 73 HDAVVALGVVI 83
>pdb|2OBX|A Chain A, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|B Chain B, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|C Chain C, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|D Chain D, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|E Chain E, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|F Chain F, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|G Chain G, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|H Chain H, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|I Chain I, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|J Chain J, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
Length = 157
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
E +R A+V AR++ + + +DV VPG++EI + A+ L ++G
Sbjct: 10 ETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETG 69
Query: 134 KYTAVLCIGAVV 145
+Y AVL VV
Sbjct: 70 RYGAVLGTAFVV 81
>pdb|1S5B|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation Form 3
pdb|1S5C|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation,
Crystal Form 1
pdb|1S5D|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation,
Crystal Form 2
Length = 240
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 24 GFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVA 83
G P+ S SF R GTQ+ I + QT VRH G+++ + LR A +V
Sbjct: 21 GLMPRGQSESFDR-------GTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVG 73
Query: 84 R 84
+
Sbjct: 74 Q 74
>pdb|1T13|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1XN1|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|F Chain F, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|G Chain G, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|H Chain H, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|I Chain I, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|J Chain J, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
Length = 158
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 110 NIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139
+++ VPG++EI + A+ L ++G+Y A++
Sbjct: 45 EVEIFDVPGAYEIPLHAKTLARTGRYAAIV 74
>pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
Length = 158
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 111 IDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139
+++ VPG++EI + A+ L ++G+Y A++
Sbjct: 46 VEIFDVPGAYEIPLHAKTLARTGRYAAIV 74
>pdb|3J20|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
pdb|3J21|6 Chain 6, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 99
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 9 IHHSPLASSSRQFING-------FSPKPTSMSFSRSSSLKGFGTQI------AIERKERL 55
I+H + SR+ + G +P+ T + + RS FG+ I A + KER+
Sbjct: 23 IYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSY----FGSYISKGYAKAYDSKERM 78
Query: 56 SFVQTEAVRHLTGFLTKNEG 75
+++ E + G + K EG
Sbjct: 79 LYIEPEYILIRDGLIEKKEG 98
>pdb|1S5E|A Chain A, Cholera Holotoxin, Crystal Form 1
pdb|1S5E|B Chain B, Cholera Holotoxin, Crystal Form 1
pdb|1S5F|A Chain A, Cholera Holotoxin, Crystal Form 2
Length = 240
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 24 GFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVA 83
G P+ S F R GTQ+ I + QT VRH G+++ + LR A +V
Sbjct: 21 GLMPRGQSEYFDR-------GTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVG 73
Query: 84 R 84
+
Sbjct: 74 Q 74
>pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
Recombination
pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
Recombination
pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
Recombination
pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
Recombination
Length = 320
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 31 SMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVT 90
S+SF LK T +++E + F +++ R L LT++E R +V ++L
Sbjct: 74 SLSFLYKEILK---TPLSLE----IRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPI 126
Query: 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
KLL L + ++ ++ID F+ G + GK GK
Sbjct: 127 KLLYGSGLRLMECMRLRVQDID-------FDYGAIRIWQGKGGK 163
>pdb|2A5D|B Chain B, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|B Chain B, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2A5G|B Chain B, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 193
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 24 GFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVA 83
G P+ S F R GTQ+ I + QT VRH G+++ + LR A +V
Sbjct: 22 GLMPRGQSEYFDR-------GTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVG 74
Query: 84 R 84
+
Sbjct: 75 Q 75
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|B Chain B, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|D Chain D, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|F Chain F, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|H Chain H, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 152
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 80 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 129
>pdb|1XTC|A Chain A, Cholera Toxin
Length = 194
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 24 GFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVA 83
G P+ S F R GTQ+ I + QT VRH G+++ + LR A +V
Sbjct: 21 GLMPRGQSEYFDR-------GTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVG 73
Query: 84 R 84
+
Sbjct: 74 Q 74
>pdb|3LHA|A Chain A, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
pdb|3LHA|B Chain B, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
Length = 340
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 12 SPLASSS---RQFINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAV 63
+P+ SS R F+ G+ PT ++ S++ + + I+ +ER F Q E V
Sbjct: 241 APVRGSSIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVV 295
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 339 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 388
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 280 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 329
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 275 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 324
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 275 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 324
>pdb|2R51|A Chain A, Crystal Structure Of Mouse Vps26b
Length = 340
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 19 RQFINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAV 63
R F+ G+ PT ++ S++ + + I+ +ER F Q E V
Sbjct: 251 RLFLAGYELTPTXRDINKKFSVRYYLNLVLIDEEERRYFKQQEVV 295
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 276 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 325
>pdb|3LH8|A Chain A, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH8|B Chain B, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH9|A Chain A, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
pdb|3LH9|B Chain B, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
Length = 340
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 19 RQFINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAV 63
R F+ G+ PT ++ S++ + + I+ +ER F Q E V
Sbjct: 251 RLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVV 295
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV 116
KN L+F ++V + +L ETFK+ +KEE D + V
Sbjct: 584 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV 623
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 52 KERLSFVQT-----EAVRHLTGF-LTKNEGLRFALVVARFNEL-VTKLLLEGALETFKKY 104
K+R F+ +A + G+ + ++ GL V + EL + KL E T+ Y
Sbjct: 47 KKRAQFITDFRYVEQASKQAVGYEIVQHAGLIIDEVAKQVKELGIQKLGFEQDTLTYSSY 106
Query: 105 SVKEENIDVVWVPGS 119
S +E ID ++P S
Sbjct: 107 SAHKEAIDAEFIPTS 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,802,044
Number of Sequences: 62578
Number of extensions: 125617
Number of successful extensions: 494
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 38
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)