Query 032216
Match_columns 145
No_of_seqs 131 out of 1197
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nq4_A 6,7-dimethyl-8-ribityll 100.0 2.3E-30 7.9E-35 202.3 9.9 82 63-145 1-83 (156)
2 1c2y_A Protein (lumazine synth 100.0 5.2E-30 1.8E-34 200.2 10.3 81 64-145 2-82 (156)
3 1hqk_A 6,7-dimethyl-8-ribityll 100.0 4.5E-30 1.5E-34 199.9 9.9 80 65-145 3-82 (154)
4 1rvv_A Riboflavin synthase; tr 100.0 4.7E-30 1.6E-34 199.9 9.8 80 65-145 3-82 (154)
5 1di0_A Lumazine synthase; tran 100.0 2.2E-29 7.4E-34 196.7 8.7 74 72-145 7-80 (158)
6 2obx_A DMRL synthase 1, 6,7-di 100.0 2.2E-29 7.6E-34 196.5 8.8 74 72-145 8-81 (157)
7 1kz1_A 6,7-dimethyl-8-ribityll 100.0 6.5E-29 2.2E-33 194.5 8.8 74 72-145 14-88 (159)
8 1ejb_A Lumazine synthase; anal 100.0 2.2E-28 7.6E-33 192.8 9.8 74 72-145 13-91 (168)
9 2i0f_A 6,7-dimethyl-8-ribityll 99.9 6.2E-27 2.1E-31 182.8 9.6 68 75-145 12-84 (157)
10 2c92_A 6,7-dimethyl-8-ribityll 99.9 1.5E-26 5.2E-31 181.2 10.1 70 72-145 14-83 (160)
11 1c41_A Lumazine synthase; ribo 99.9 1.8E-27 6.2E-32 192.5 0.0 74 72-145 12-121 (200)
12 2b99_A Riboflavin synthase; lu 99.9 1.5E-24 5.1E-29 169.6 6.2 65 76-144 3-67 (156)
13 3e61_A Putative transcriptiona 96.2 0.02 6.7E-07 43.3 7.8 67 73-142 6-72 (277)
14 3l6u_A ABC-type sugar transpor 96.1 0.025 8.5E-07 42.9 8.1 68 72-143 5-73 (293)
15 3egc_A Putative ribose operon 96.1 0.025 8.4E-07 43.2 8.1 69 72-143 5-73 (291)
16 3k4h_A Putative transcriptiona 96.0 0.012 4.2E-07 44.6 5.9 69 72-143 5-78 (292)
17 3jy6_A Transcriptional regulat 96.0 0.037 1.3E-06 42.0 8.5 68 73-143 5-72 (276)
18 3hs3_A Ribose operon repressor 95.7 0.046 1.6E-06 41.7 7.9 68 72-142 7-75 (277)
19 3kke_A LACI family transcripti 95.7 0.038 1.3E-06 42.7 7.4 68 73-143 13-80 (303)
20 3o74_A Fructose transport syst 95.7 0.054 1.8E-06 40.5 8.0 65 76-143 3-67 (272)
21 3l49_A ABC sugar (ribose) tran 95.5 0.062 2.1E-06 40.6 7.9 66 73-142 3-69 (291)
22 3k9c_A Transcriptional regulat 95.4 0.063 2.1E-06 41.2 7.9 67 72-143 9-75 (289)
23 3o1i_D Periplasmic protein TOR 95.3 0.045 1.5E-06 41.6 6.7 67 73-143 3-72 (304)
24 3gv0_A Transcriptional regulat 95.2 0.022 7.6E-07 43.6 4.6 69 72-143 5-75 (288)
25 3huu_A Transcription regulator 95.2 0.035 1.2E-06 42.8 5.8 68 73-143 20-92 (305)
26 3tb6_A Arabinose metabolism tr 95.1 0.062 2.1E-06 40.5 6.9 65 76-143 16-80 (298)
27 3c3k_A Alanine racemase; struc 95.1 0.092 3.1E-06 40.1 8.0 67 73-143 6-73 (285)
28 3miz_A Putative transcriptiona 95.0 0.045 1.5E-06 42.0 5.8 69 72-143 10-79 (301)
29 3qk7_A Transcriptional regulat 94.9 0.066 2.2E-06 41.2 6.7 67 73-143 4-74 (294)
30 3brq_A HTH-type transcriptiona 94.6 0.1 3.6E-06 39.2 7.0 67 73-143 17-86 (296)
31 1dbq_A Purine repressor; trans 94.6 0.13 4.3E-06 38.9 7.4 67 73-143 5-72 (289)
32 2iks_A DNA-binding transcripti 94.6 0.18 6E-06 38.5 8.2 67 73-143 18-85 (293)
33 2rgy_A Transcriptional regulat 94.5 0.1 3.5E-06 39.9 6.8 67 73-143 6-76 (290)
34 3ksm_A ABC-type sugar transpor 94.5 0.054 1.9E-06 40.4 5.0 64 76-142 1-67 (276)
35 3uug_A Multiple sugar-binding 94.4 0.11 3.9E-06 40.0 6.9 66 74-143 2-68 (330)
36 3hcw_A Maltose operon transcri 94.4 0.076 2.6E-06 40.8 5.8 68 73-143 5-77 (295)
37 3m9w_A D-xylose-binding peripl 94.4 0.094 3.2E-06 40.4 6.3 66 75-143 2-67 (313)
38 2fep_A Catabolite control prot 94.4 0.18 6E-06 38.6 7.9 67 73-143 14-81 (289)
39 3lkv_A Uncharacterized conserv 94.3 0.32 1.1E-05 38.5 9.5 69 73-143 6-78 (302)
40 3d8u_A PURR transcriptional re 94.3 0.12 4.1E-06 38.7 6.7 65 75-143 3-68 (275)
41 3g85_A Transcriptional regulat 94.3 0.037 1.3E-06 42.0 3.9 69 72-143 8-77 (289)
42 3jvd_A Transcriptional regulat 94.3 0.11 3.9E-06 41.0 6.7 67 73-143 62-128 (333)
43 1byk_A Protein (trehalose oper 94.2 0.24 8.1E-06 36.9 8.1 64 76-143 3-67 (255)
44 3dbi_A Sugar-binding transcrip 94.1 0.19 6.4E-06 39.4 7.6 66 73-142 59-127 (338)
45 3h75_A Periplasmic sugar-bindi 93.9 0.27 9.4E-06 38.6 8.3 65 75-142 3-70 (350)
46 2fn9_A Ribose ABC transporter, 93.9 0.26 8.9E-06 37.3 7.8 64 76-143 3-67 (290)
47 2o20_A Catabolite control prot 93.8 0.26 8.8E-06 38.6 8.0 67 73-143 61-128 (332)
48 3clk_A Transcription regulator 93.8 0.11 3.6E-06 39.7 5.5 67 73-143 6-74 (290)
49 3e3m_A Transcriptional regulat 93.8 0.27 9.2E-06 39.0 8.0 67 73-143 68-135 (355)
50 3ctp_A Periplasmic binding pro 93.7 0.27 9.4E-06 38.4 7.9 66 73-143 58-124 (330)
51 3gbv_A Putative LACI-family tr 93.6 0.21 7.2E-06 37.7 6.9 68 72-143 5-78 (304)
52 3rot_A ABC sugar transporter, 93.6 0.17 5.7E-06 38.8 6.4 65 75-143 3-70 (297)
53 2fqx_A Membrane lipoprotein TM 93.6 0.31 1.1E-05 38.8 8.1 66 74-143 3-71 (318)
54 3bil_A Probable LACI-family tr 93.6 0.23 8E-06 39.4 7.4 67 73-143 64-131 (348)
55 3h5o_A Transcriptional regulat 93.5 0.2 7E-06 39.3 6.9 68 73-143 60-127 (339)
56 3kjx_A Transcriptional regulat 93.4 0.24 8.1E-06 39.0 7.1 68 72-143 65-133 (344)
57 2qu7_A Putative transcriptiona 93.2 0.2 6.8E-06 38.0 6.2 66 73-143 6-72 (288)
58 8abp_A L-arabinose-binding pro 93.2 0.26 8.9E-06 37.4 6.8 64 75-143 2-66 (306)
59 2rjo_A Twin-arginine transloca 92.9 0.33 1.1E-05 37.8 7.3 68 73-143 3-72 (332)
60 3qk7_A Transcriptional regulat 92.9 0.57 2E-05 35.8 8.4 68 74-141 125-194 (294)
61 2vk2_A YTFQ, ABC transporter p 92.9 0.29 9.9E-06 37.6 6.8 65 75-143 2-67 (306)
62 2fvy_A D-galactose-binding per 92.8 0.39 1.3E-05 36.4 7.3 63 76-142 3-67 (309)
63 2hsg_A Glucose-resistance amyl 92.8 0.21 7E-06 39.0 5.9 67 73-143 58-125 (332)
64 3g1w_A Sugar ABC transporter; 92.8 0.17 5.8E-06 38.6 5.3 64 75-143 4-70 (305)
65 3gyb_A Transcriptional regulat 92.8 0.069 2.4E-06 40.3 3.0 65 73-143 3-68 (280)
66 1qpz_A PURA, protein (purine n 92.7 0.56 1.9E-05 36.8 8.2 67 73-143 56-123 (340)
67 3lft_A Uncharacterized protein 92.5 0.69 2.4E-05 35.6 8.5 65 76-142 3-70 (295)
68 3brs_A Periplasmic binding pro 92.3 0.26 8.9E-06 37.1 5.7 66 74-143 4-74 (289)
69 2qh8_A Uncharacterized protein 92.2 0.64 2.2E-05 36.0 8.0 68 73-142 6-77 (302)
70 3hs3_A Ribose operon repressor 92.0 0.65 2.2E-05 35.2 7.6 64 74-141 121-185 (277)
71 2dri_A D-ribose-binding protei 91.9 0.63 2.1E-05 35.1 7.4 63 76-142 2-65 (271)
72 3tb6_A Arabinose metabolism tr 91.8 0.61 2.1E-05 35.0 7.2 67 74-141 136-208 (298)
73 3k4h_A Putative transcriptiona 91.6 0.82 2.8E-05 34.4 7.8 67 75-141 131-199 (292)
74 3d8u_A PURR transcriptional re 91.5 0.59 2E-05 34.9 6.9 66 75-142 120-189 (275)
75 2x7x_A Sensor protein; transfe 91.3 0.66 2.3E-05 36.1 7.2 66 73-143 4-71 (325)
76 3miz_A Putative transcriptiona 91.3 0.39 1.3E-05 36.7 5.7 68 74-141 130-204 (301)
77 3e61_A Putative transcriptiona 91.2 0.48 1.6E-05 35.5 6.0 65 74-142 121-185 (277)
78 3lft_A Uncharacterized protein 91.0 1.5 5.3E-05 33.6 9.0 73 61-141 121-193 (295)
79 2ioy_A Periplasmic sugar-bindi 90.8 0.86 2.9E-05 34.5 7.2 63 76-142 2-65 (283)
80 3bbl_A Regulatory protein of L 90.7 0.2 6.7E-06 38.2 3.5 65 75-143 4-73 (287)
81 3g85_A Transcriptional regulat 90.6 0.46 1.6E-05 35.9 5.5 68 74-141 126-195 (289)
82 3cs3_A Sugar-binding transcrip 90.5 0.22 7.6E-06 37.6 3.6 61 72-142 5-65 (277)
83 1jye_A Lactose operon represso 90.2 1.2 4.1E-05 35.2 7.8 66 73-142 59-126 (349)
84 1gud_A ALBP, D-allose-binding 90.1 1.3 4.5E-05 33.7 7.8 63 76-142 2-67 (288)
85 2qu7_A Putative transcriptiona 90.0 1 3.5E-05 34.0 7.0 67 75-142 122-195 (288)
86 1pea_A Amidase operon; gene re 90.0 1.3 4.4E-05 35.1 7.9 63 75-142 140-205 (385)
87 2h0a_A TTHA0807, transcription 89.8 0.25 8.5E-06 37.0 3.4 63 77-143 1-64 (276)
88 3gbv_A Putative LACI-family tr 89.6 1.4 4.7E-05 33.1 7.4 68 75-142 135-208 (304)
89 3kke_A LACI family transcripti 89.5 1.2 4.2E-05 34.1 7.2 68 74-141 130-204 (303)
90 3d02_A Putative LACI-type tran 89.4 0.78 2.7E-05 34.7 5.9 64 74-142 3-69 (303)
91 2qh8_A Uncharacterized protein 89.3 2.2 7.4E-05 33.0 8.5 72 62-141 129-200 (302)
92 3hcw_A Maltose operon transcri 89.1 1.7 5.7E-05 33.2 7.7 66 74-142 130-200 (295)
93 3h5o_A Transcriptional regulat 89.0 1.4 4.9E-05 34.4 7.3 66 74-141 177-246 (339)
94 3bbl_A Regulatory protein of L 88.6 1.7 5.8E-05 32.9 7.4 66 75-142 125-196 (287)
95 2rgy_A Transcriptional regulat 88.6 1.7 5.9E-05 33.0 7.4 65 75-141 128-196 (290)
96 3brq_A HTH-type transcriptiona 88.2 0.94 3.2E-05 33.9 5.6 66 75-142 139-208 (296)
97 3dbi_A Sugar-binding transcrip 88.1 1.3 4.4E-05 34.6 6.6 66 74-141 180-249 (338)
98 2hsg_A Glucose-resistance amyl 87.8 1.3 4.5E-05 34.4 6.4 65 75-141 177-246 (332)
99 2h3h_A Sugar ABC transporter, 87.5 1.4 4.9E-05 33.8 6.4 62 76-143 2-66 (313)
100 3gv0_A Transcriptional regulat 87.5 0.77 2.6E-05 34.9 4.8 67 74-142 126-196 (288)
101 3jvd_A Transcriptional regulat 87.4 2.1 7.3E-05 33.6 7.5 63 74-142 173-239 (333)
102 2fvy_A D-galactose-binding per 87.3 2.3 7.9E-05 32.0 7.4 65 75-141 140-210 (309)
103 3huu_A Transcription regulator 87.1 1.4 4.7E-05 33.8 6.1 64 74-141 143-209 (305)
104 2fep_A Catabolite control prot 87.1 2 6.7E-05 32.7 6.9 65 75-141 133-202 (289)
105 2o20_A Catabolite control prot 87.0 1.5 5.1E-05 34.2 6.4 65 75-142 180-247 (332)
106 2iks_A DNA-binding transcripti 86.8 2.1 7E-05 32.5 6.9 65 74-142 137-205 (293)
107 1tjy_A Sugar transport protein 86.6 2.3 7.8E-05 33.1 7.2 62 75-142 3-68 (316)
108 2h0a_A TTHA0807, transcription 86.6 1.6 5.5E-05 32.5 6.1 68 75-142 114-188 (276)
109 1usg_A Leucine-specific bindin 86.3 2.1 7.2E-05 32.8 6.7 63 75-142 138-201 (346)
110 3o74_A Fructose transport syst 86.2 1.3 4.5E-05 32.8 5.4 65 74-142 119-188 (272)
111 3lop_A Substrate binding perip 86.1 3.9 0.00013 31.8 8.3 64 75-142 141-204 (364)
112 3rot_A ABC sugar transporter, 86.1 4.8 0.00017 30.5 8.7 62 75-141 130-195 (297)
113 3c3k_A Alanine racemase; struc 85.9 3.5 0.00012 31.1 7.7 65 75-142 124-192 (285)
114 3egc_A Putative ribose operon 85.9 1.2 4.2E-05 33.6 5.2 67 74-142 124-194 (291)
115 3ipc_A ABC transporter, substr 85.9 3.2 0.00011 32.0 7.7 64 75-142 138-201 (356)
116 1jx6_A LUXP protein; protein-l 85.5 3.8 0.00013 31.7 7.9 65 73-141 41-111 (342)
117 3cs3_A Sugar-binding transcrip 85.5 2.8 9.4E-05 31.5 6.9 63 75-142 118-185 (277)
118 1qpz_A PURA, protein (purine n 85.4 1.5 5.2E-05 34.3 5.6 66 75-142 177-246 (340)
119 3snr_A Extracellular ligand-bi 85.4 2.5 8.6E-05 32.3 6.8 65 74-142 134-198 (362)
120 1dbq_A Purine repressor; trans 84.4 1.1 3.7E-05 33.7 4.2 66 75-142 126-195 (289)
121 2hqb_A Transcriptional activat 84.3 1.4 4.8E-05 34.5 5.0 65 73-142 3-71 (296)
122 3gyb_A Transcriptional regulat 84.1 2.9 0.0001 31.2 6.5 63 75-142 118-184 (280)
123 3kjx_A Transcriptional regulat 84.0 2.5 8.5E-05 33.1 6.3 65 75-141 185-254 (344)
124 3hut_A Putative branched-chain 83.9 3 0.0001 32.2 6.7 65 74-142 138-202 (358)
125 4b4k_A N5-carboxyaminoimidazol 83.9 4.8 0.00016 31.9 7.8 68 67-141 12-84 (181)
126 3sg0_A Extracellular ligand-bi 83.7 3.3 0.00011 32.1 6.8 65 74-142 158-222 (386)
127 3g1w_A Sugar ABC transporter; 83.7 3.6 0.00012 31.1 6.9 75 61-141 115-194 (305)
128 3h75_A Periplasmic sugar-bindi 83.7 4.6 0.00016 31.5 7.7 64 76-142 146-213 (350)
129 4evq_A Putative ABC transporte 83.6 3.6 0.00012 31.9 7.0 65 74-142 150-214 (375)
130 3clk_A Transcription regulator 83.1 1.5 5.1E-05 33.2 4.5 66 75-142 125-193 (290)
131 4fe7_A Xylose operon regulator 82.9 2.9 9.8E-05 34.0 6.4 60 73-140 23-82 (412)
132 3k9c_A Transcriptional regulat 82.8 2.3 7.9E-05 32.3 5.5 63 75-141 126-192 (289)
133 3e3m_A Transcriptional regulat 82.5 1.7 5.7E-05 34.3 4.8 67 74-141 186-257 (355)
134 4eyg_A Twin-arginine transloca 82.2 5.4 0.00018 30.8 7.5 63 75-142 139-202 (368)
135 2h3h_A Sugar ABC transporter, 81.8 6 0.00021 30.2 7.6 64 75-142 123-190 (313)
136 3rpe_A MDAB, modulator of drug 81.5 4.8 0.00016 31.7 7.1 59 76-140 26-89 (218)
137 1jye_A Lactose operon represso 81.5 8.7 0.0003 30.2 8.6 64 75-142 179-246 (349)
138 3ksm_A ABC-type sugar transpor 81.4 2 6.9E-05 31.7 4.6 77 61-141 113-194 (276)
139 3okf_A 3-dehydroquinate syntha 81.4 8.5 0.00029 32.9 9.1 63 74-142 61-131 (390)
140 3l6u_A ABC-type sugar transpor 81.0 4.6 0.00016 30.2 6.5 61 77-141 137-202 (293)
141 3brs_A Periplasmic binding pro 80.9 4.7 0.00016 30.1 6.5 64 75-142 131-198 (289)
142 3i09_A Periplasmic branched-ch 80.5 7.5 0.00026 30.3 7.9 64 74-142 139-203 (375)
143 2dri_A D-ribose-binding protei 80.5 7.5 0.00026 29.0 7.6 62 76-141 124-189 (271)
144 3ox4_A Alcohol dehydrogenase 2 80.4 3.8 0.00013 34.2 6.5 62 75-142 31-96 (383)
145 3ors_A N5-carboxyaminoimidazol 80.2 8 0.00027 30.0 7.8 61 75-142 3-66 (163)
146 3h5t_A Transcriptional regulat 80.2 2.6 8.9E-05 33.3 5.1 66 73-143 66-137 (366)
147 3td9_A Branched chain amino ac 79.9 4.2 0.00014 31.6 6.2 64 75-142 149-212 (366)
148 4grd_A N5-CAIR mutase, phospho 79.7 9.7 0.00033 29.9 8.2 62 73-141 10-74 (173)
149 3eaf_A ABC transporter, substr 79.2 2.1 7.2E-05 33.9 4.3 64 75-142 141-207 (391)
150 3trh_A Phosphoribosylaminoimid 79.1 8.9 0.00031 30.0 7.8 61 75-142 6-69 (169)
151 3ce9_A Glycerol dehydrogenase; 78.6 4.4 0.00015 33.1 6.2 60 76-142 35-96 (354)
152 3lp6_A Phosphoribosylaminoimid 78.2 7.2 0.00025 30.6 7.0 63 73-142 5-70 (174)
153 1gud_A ALBP, D-allose-binding 77.8 7.9 0.00027 29.3 7.0 63 75-141 133-200 (288)
154 3kuu_A Phosphoribosylaminoimid 77.7 9.9 0.00034 29.9 7.7 60 76-142 13-75 (174)
155 1jx6_A LUXP protein; protein-l 77.6 5.7 0.00019 30.7 6.3 63 75-141 175-241 (342)
156 2vk2_A YTFQ, ABC transporter p 77.4 5.9 0.0002 30.2 6.2 64 75-142 128-199 (306)
157 2x7x_A Sensor protein; transfe 77.3 6.8 0.00023 30.3 6.6 64 75-142 128-196 (325)
158 3h5t_A Transcriptional regulat 77.1 3.8 0.00013 32.3 5.2 67 74-141 188-275 (366)
159 3iwt_A 178AA long hypothetical 76.6 4.3 0.00015 30.0 5.1 69 73-143 13-90 (178)
160 2ioy_A Periplasmic sugar-bindi 75.8 8.1 0.00028 29.0 6.6 64 75-142 123-191 (283)
161 3ctp_A Periplasmic binding pro 75.7 1.9 6.6E-05 33.5 3.1 65 75-142 172-239 (330)
162 3l49_A ABC sugar (ribose) tran 75.4 4.4 0.00015 30.3 4.9 66 74-141 124-198 (291)
163 3hgm_A Universal stress protei 75.1 13 0.00043 25.0 6.8 51 88-140 66-116 (147)
164 3rg8_A Phosphoribosylaminoimid 74.7 10 0.00036 29.2 7.0 60 76-142 3-66 (159)
165 2a5l_A Trp repressor binding p 74.6 6.9 0.00023 28.3 5.7 40 76-119 6-45 (200)
166 3n0w_A ABC branched chain amin 74.4 8.7 0.0003 30.1 6.6 63 75-142 142-205 (379)
167 3bil_A Probable LACI-family tr 72.9 11 0.00039 29.5 7.0 62 75-141 184-248 (348)
168 1xmp_A PURE, phosphoribosylami 72.1 17 0.00057 28.5 7.6 60 76-142 12-74 (170)
169 3lkb_A Probable branched-chain 71.6 6.4 0.00022 31.0 5.2 63 75-142 143-206 (392)
170 1u11_A PURE (N5-carboxyaminoim 71.3 18 0.00061 28.6 7.7 61 75-142 21-84 (182)
171 1sg6_A Pentafunctional AROM po 71.1 26 0.00088 29.3 9.1 61 76-142 37-113 (393)
172 3m9w_A D-xylose-binding peripl 69.1 17 0.00056 27.6 7.0 66 76-142 124-196 (313)
173 2bon_A Lipid kinase; DAG kinas 69.0 14 0.00047 29.9 6.9 61 76-142 30-90 (332)
174 2rjo_A Twin-arginine transloca 69.0 11 0.00036 29.2 5.9 63 75-141 136-204 (332)
175 3sm9_A Mglur3, metabotropic gl 68.9 12 0.00041 31.4 6.7 64 75-142 185-251 (479)
176 2ywx_A Phosphoribosylaminoimid 68.5 21 0.00073 27.5 7.5 58 78-142 2-59 (157)
177 3s99_A Basic membrane lipoprot 67.6 6.1 0.00021 32.8 4.5 67 73-143 24-95 (356)
178 3ksx_A Nitrate transport prote 67.5 9.3 0.00032 29.6 5.3 57 72-140 128-184 (324)
179 2h4a_A YRAM (HI1655); perplasm 67.3 13 0.00045 30.0 6.4 62 75-142 122-183 (325)
180 3ix1_A N-formyl-4-amino-5-amin 67.2 7.4 0.00025 29.6 4.6 57 71-140 102-158 (302)
181 1jq5_A Glycerol dehydrogenase; 67.0 23 0.00079 28.9 7.9 61 76-142 32-94 (370)
182 3i45_A Twin-arginine transloca 66.9 16 0.00056 28.6 6.7 64 74-142 141-207 (387)
183 1tjy_A Sugar transport protein 66.8 20 0.00069 27.6 7.1 64 75-141 128-196 (316)
184 1byk_A Protein (trehalose oper 66.5 12 0.00041 27.4 5.5 61 75-141 115-179 (255)
185 2fqx_A Membrane lipoprotein TM 66.3 14 0.00047 29.1 6.2 61 76-141 130-195 (318)
186 8abp_A L-arabinose-binding pro 65.6 19 0.00063 27.0 6.5 65 76-141 133-204 (306)
187 3oow_A Phosphoribosylaminoimid 65.6 28 0.00094 27.1 7.6 60 76-142 6-68 (166)
188 2fn9_A Ribose ABC transporter, 65.5 19 0.00065 26.8 6.5 64 75-142 129-199 (290)
189 1ofu_X SULA, hypothetical prot 65.2 9.2 0.00031 27.6 4.6 57 75-140 33-89 (119)
190 3d02_A Putative LACI-type tran 64.4 13 0.00043 27.9 5.4 63 77-142 129-197 (303)
191 2e4u_A Metabotropic glutamate 64.3 19 0.00063 30.6 7.0 64 75-142 186-252 (555)
192 3fdx_A Putative filament prote 64.1 20 0.00069 23.9 5.9 53 86-140 60-112 (143)
193 2hqb_A Transcriptional activat 63.2 17 0.00057 28.3 6.0 59 75-141 126-188 (296)
194 1z0s_A Probable inorganic poly 62.8 13 0.00046 30.4 5.7 49 74-142 28-76 (278)
195 1o4v_A Phosphoribosylaminoimid 62.6 35 0.0012 26.9 7.8 60 76-142 14-76 (183)
196 3un6_A Hypothetical protein sa 62.3 16 0.00054 28.6 5.8 58 72-140 150-208 (341)
197 3qsl_A Putative exported prote 62.2 12 0.00041 28.5 4.9 60 72-141 135-194 (346)
198 1o2d_A Alcohol dehydrogenase, 59.6 20 0.0007 29.5 6.3 62 76-142 41-106 (371)
199 3b6i_A Flavoprotein WRBA; flav 59.3 13 0.00044 26.7 4.5 40 76-119 2-42 (198)
200 1vlj_A NADH-dependent butanol 59.2 32 0.0011 28.7 7.5 60 76-142 44-109 (407)
201 2qv7_A Diacylglycerol kinase D 58.6 25 0.00084 28.3 6.5 62 77-142 26-88 (337)
202 3uif_A Sulfonate ABC transport 58.3 12 0.00042 29.4 4.5 57 72-140 116-172 (348)
203 3s40_A Diacylglycerol kinase; 56.3 27 0.00092 27.8 6.3 63 75-142 8-71 (304)
204 1ta9_A Glycerol dehydrogenase; 56.2 43 0.0015 28.8 7.9 57 77-142 93-153 (450)
205 2x26_A Periplasmic aliphatic s 55.6 21 0.00072 27.0 5.3 58 71-140 101-158 (308)
206 3fni_A Putative diflavin flavo 55.3 47 0.0016 23.9 7.0 59 75-140 4-62 (159)
207 3uhj_A Probable glycerol dehyd 55.3 14 0.00048 31.1 4.6 60 76-142 53-114 (387)
208 1oft_A SULA, hypothetical prot 55.0 17 0.00057 27.9 4.7 58 74-140 74-131 (161)
209 1u0t_A Inorganic polyphosphate 54.6 11 0.00038 30.4 3.8 31 76-107 5-35 (307)
210 3qbe_A 3-dehydroquinate syntha 53.9 41 0.0014 28.4 7.3 60 76-142 44-111 (368)
211 4h62_V Mediator of RNA polymer 53.5 12 0.0004 21.7 2.6 22 82-103 6-27 (31)
212 2izo_A FEN1, flap structure-sp 53.1 17 0.00058 30.0 4.7 46 88-140 123-168 (346)
213 1a76_A Flap endonuclease-1 pro 51.4 16 0.00054 29.9 4.2 45 89-140 127-171 (326)
214 3o1i_D Periplasmic protein TOR 51.4 14 0.00047 27.6 3.6 76 61-141 121-200 (304)
215 3ks9_A Mglur1, metabotropic gl 51.2 39 0.0013 28.4 6.8 63 75-142 197-264 (496)
216 4fe7_A Xylose operon regulator 51.2 14 0.0005 29.8 3.9 66 74-142 138-211 (412)
217 3ixl_A Amdase, arylmalonate de 50.8 86 0.0029 24.4 8.6 60 75-143 117-188 (240)
218 3h5l_A Putative branched-chain 50.7 29 0.001 27.5 5.6 64 74-142 163-227 (419)
219 2amj_A Modulator of drug activ 50.6 62 0.0021 24.2 7.2 59 76-140 13-76 (204)
220 4eyg_A Twin-arginine transloca 50.0 70 0.0024 24.4 7.5 67 74-140 5-78 (368)
221 1xah_A Sadhqs, 3-dehydroquinat 49.4 61 0.0021 26.4 7.5 59 76-142 32-98 (354)
222 1rrm_A Lactaldehyde reductase; 48.8 18 0.00061 29.8 4.2 61 76-142 32-96 (386)
223 4evq_A Putative ABC transporte 48.2 67 0.0023 24.6 7.2 69 73-141 14-89 (375)
224 2g29_A Nitrate transport prote 48.1 23 0.00077 29.2 4.7 57 72-140 152-210 (417)
225 3jy6_A Transcriptional regulat 47.4 15 0.0005 27.4 3.2 61 74-141 122-188 (276)
226 3lq1_A 2-succinyl-5-enolpyruvy 47.3 43 0.0015 29.0 6.5 43 92-139 12-54 (578)
227 3q8k_A Flap endonuclease 1; he 46.8 22 0.00076 29.6 4.5 43 90-139 133-175 (341)
228 3i6v_A Periplasmic His/Glu/Gln 46.2 32 0.0011 24.7 4.8 73 47-140 74-151 (232)
229 1sqs_A Conserved hypothetical 45.8 37 0.0013 25.7 5.4 37 76-115 2-40 (242)
230 3hly_A Flavodoxin-like domain; 45.7 56 0.0019 23.3 6.0 39 76-118 1-39 (161)
231 3ory_A Flap endonuclease 1; hy 45.4 23 0.0008 29.8 4.5 45 89-140 141-185 (363)
232 3bfj_A 1,3-propanediol oxidore 45.4 7.2 0.00025 32.3 1.3 64 76-142 34-100 (387)
233 1x10_A Pyrrolidone-carboxylate 45.3 19 0.00064 28.2 3.6 45 99-143 24-69 (208)
234 1pea_A Amidase operon; gene re 44.6 1.1E+02 0.0036 23.9 8.0 68 74-141 6-82 (385)
235 2h31_A Multifunctional protein 44.6 96 0.0033 27.1 8.4 61 75-142 265-329 (425)
236 2vzf_A NADH-dependent FMN redu 44.1 51 0.0017 24.1 5.7 38 76-116 3-42 (197)
237 3qek_A NMDA glutamate receptor 43.6 67 0.0023 25.1 6.7 65 75-142 139-223 (384)
238 4f06_A Extracellular ligand-bi 43.6 78 0.0027 24.8 7.0 63 74-141 138-201 (371)
239 3hl0_A Maleylacetate reductase 43.5 9.9 0.00034 31.5 1.9 56 76-142 35-95 (353)
240 1a2z_A Pyrrolidone carboxyl pe 42.2 21 0.0007 28.3 3.4 35 109-143 35-70 (220)
241 2q9u_A A-type flavoprotein; fl 41.7 95 0.0032 24.9 7.4 58 75-140 256-313 (414)
242 3s2y_A Chromate reductase; ura 47.7 5.5 0.00019 30.2 0.0 37 74-111 5-42 (199)
243 2wvg_A PDC, pyruvate decarboxy 41.5 41 0.0014 29.0 5.4 40 95-139 7-46 (568)
244 3eya_A Pyruvate dehydrogenase 41.3 39 0.0013 29.0 5.3 40 95-139 7-46 (549)
245 3n0x_A Possible substrate bind 41.3 35 0.0012 26.6 4.7 63 75-141 141-208 (374)
246 3f4k_A Putative methyltransfer 41.2 14 0.00047 27.3 2.1 46 91-144 79-124 (257)
247 2q62_A ARSH; alpha/beta, flavo 41.1 8.4 0.00029 30.5 1.0 40 74-116 33-73 (247)
248 4esw_A Pyrimidine biosynthesis 40.7 35 0.0012 26.8 4.6 58 70-141 106-163 (342)
249 3s3t_A Nucleotide-binding prot 40.5 78 0.0027 20.9 6.4 47 90-140 67-114 (146)
250 4gi5_A Quinone reductase; prot 40.4 37 0.0013 27.6 4.8 41 73-116 20-61 (280)
251 2vbf_A Branched-chain alpha-ke 39.6 48 0.0016 28.5 5.6 40 95-139 29-68 (570)
252 3lop_A Substrate binding perip 39.1 1.3E+02 0.0044 23.1 8.0 67 74-140 4-79 (364)
253 1yco_A Branched-chain phosphot 39.0 1.1E+02 0.0036 24.8 7.3 57 77-143 3-77 (279)
254 1ovm_A Indole-3-pyruvate decar 38.9 51 0.0017 28.1 5.6 40 95-139 9-48 (552)
255 1t9b_A Acetolactate synthase, 38.3 35 0.0012 30.7 4.7 40 94-138 85-124 (677)
256 1rxw_A Flap structure-specific 38.1 44 0.0015 27.3 4.9 42 92-140 129-170 (336)
257 4hps_A Pyrrolidone-carboxylate 37.9 17 0.00057 29.2 2.3 34 110-143 58-92 (228)
258 1b43_A Protein (FEN-1); nuclea 37.8 35 0.0012 27.9 4.3 45 89-140 127-171 (340)
259 3ckm_A YRAM (HI1655), LPOA; pe 37.8 88 0.003 24.1 6.4 62 75-142 124-185 (327)
260 2pjk_A 178AA long hypothetical 37.5 66 0.0023 24.1 5.5 67 73-143 13-90 (178)
261 1ox0_A Beta ketoacyl-acyl carr 37.4 1.2E+02 0.0042 25.1 7.6 16 128-143 195-210 (430)
262 2x7j_A 2-succinyl-5-enolpyruvy 37.3 60 0.002 28.2 5.9 42 93-139 33-74 (604)
263 2vbi_A Pyruvate decarboxylase; 37.3 42 0.0014 28.9 4.9 40 95-139 7-46 (566)
264 2y7i_A STM4351; arginine-bindi 37.2 68 0.0023 22.2 5.2 54 70-141 107-160 (229)
265 2pan_A Glyoxylate carboligase; 37.2 49 0.0017 28.8 5.3 39 95-138 31-69 (616)
266 1mjh_A Protein (ATP-binding do 37.1 96 0.0033 21.0 6.4 45 91-140 82-126 (162)
267 2zki_A 199AA long hypothetical 37.0 37 0.0013 24.4 3.9 39 76-119 5-43 (199)
268 3vc1_A Geranyl diphosphate 2-C 36.9 16 0.00054 28.5 2.0 47 90-144 149-195 (312)
269 3kkz_A Uncharacterized protein 36.9 14 0.00049 27.7 1.7 46 91-144 79-124 (267)
270 3dlc_A Putative S-adenosyl-L-m 36.5 18 0.00061 25.6 2.1 45 91-143 76-120 (219)
271 3lkv_A Uncharacterized conserv 36.5 1.5E+02 0.005 22.9 8.8 61 75-141 140-200 (302)
272 3lac_A Pyrrolidone-carboxylate 36.2 22 0.00077 27.9 2.8 34 110-143 36-70 (215)
273 3tem_A Ribosyldihydronicotinam 36.2 37 0.0013 26.2 4.0 39 75-116 1-40 (228)
274 2dum_A Hypothetical protein PH 36.1 1E+02 0.0035 21.1 6.1 46 90-140 76-123 (170)
275 4feg_A Pyruvate oxidase; carba 35.9 64 0.0022 28.1 5.9 40 95-139 15-55 (603)
276 1tq8_A Hypothetical protein RV 35.8 1.1E+02 0.0038 21.3 6.7 47 90-140 79-125 (163)
277 3hww_A 2-succinyl-5-enolpyruvy 35.8 82 0.0028 27.1 6.5 39 95-138 12-50 (556)
278 3jzd_A Iron-containing alcohol 35.7 49 0.0017 27.4 4.9 56 76-142 37-97 (358)
279 2lci_A Protein OR36; structura 35.2 1.1E+02 0.0036 22.6 6.1 58 76-142 1-58 (134)
280 2qip_A Protein of unknown func 35.0 42 0.0014 24.4 4.0 45 92-141 61-115 (165)
281 1kpg_A CFA synthase;, cyclopro 34.8 25 0.00086 26.6 2.8 43 91-144 97-139 (287)
282 2ark_A Flavodoxin; FMN, struct 34.8 58 0.002 23.5 4.7 39 76-118 5-44 (188)
283 1iu8_A Pyrrolidone-carboxylate 34.7 62 0.0021 25.2 5.1 35 109-143 31-66 (206)
284 3hft_A WBMS, polysaccharide de 34.7 84 0.0029 26.0 6.1 59 64-131 25-84 (257)
285 4h86_A Peroxiredoxin type-2; o 34.6 39 0.0013 26.6 3.9 33 110-142 71-113 (199)
286 4f3p_A Glutamine-binding perip 34.4 78 0.0027 22.6 5.3 52 72-141 127-178 (249)
287 1q6z_A BFD, BFDC, benzoylforma 34.2 40 0.0014 28.7 4.2 29 95-127 6-34 (528)
288 3qe9_Y Exonuclease 1; exonucle 34.2 56 0.0019 27.3 5.1 45 89-140 125-169 (352)
289 4i62_A Amino acid ABC transpor 33.4 63 0.0021 23.1 4.6 53 70-140 145-197 (269)
290 1nkv_A Hypothetical protein YJ 33.4 19 0.00064 26.6 1.8 45 91-144 69-113 (256)
291 3lkb_A Probable branched-chain 33.1 1.7E+02 0.0058 22.6 7.6 66 75-140 7-81 (392)
292 2vk8_A Pyruvate decarboxylase 32.9 43 0.0015 28.7 4.2 37 95-136 8-44 (563)
293 3hut_A Putative branched-chain 32.8 1.6E+02 0.0055 22.3 7.9 67 74-140 3-78 (358)
294 1ul1_X Flap endonuclease-1; pr 32.7 18 0.00061 30.4 1.8 43 91-140 134-176 (379)
295 3r6w_A FMN-dependent NADH-azor 32.7 51 0.0018 24.3 4.2 38 76-116 2-43 (212)
296 1ydg_A Trp repressor binding p 32.6 68 0.0023 23.3 4.8 41 75-119 6-46 (211)
297 3i45_A Twin-arginine transloca 32.4 1.6E+02 0.0056 22.7 7.3 68 73-140 3-79 (387)
298 1t5b_A Acyl carrier protein ph 32.3 59 0.002 23.1 4.3 40 76-116 2-43 (201)
299 3ro0_A Pyrrolidone-carboxylate 32.1 35 0.0012 27.1 3.3 34 110-143 37-71 (223)
300 2ohh_A Type A flavoprotein FPR 31.4 1.8E+02 0.0061 23.0 7.4 59 74-140 255-313 (404)
301 2yjp_A Putative ABC transporte 31.2 80 0.0027 23.6 5.1 52 71-140 160-211 (291)
302 2de3_A Dibenzothiophene desulf 31.2 91 0.0031 25.1 5.7 23 97-119 160-182 (365)
303 3clh_A 3-dehydroquinate syntha 30.8 57 0.0019 26.6 4.5 60 75-142 26-93 (343)
304 4eq9_A ABC transporter substra 30.7 97 0.0033 21.7 5.2 59 71-141 111-169 (246)
305 3del_B Arginine binding protei 30.6 85 0.0029 22.1 4.9 52 70-140 113-164 (242)
306 1wdn_A GLNBP, glutamine bindin 30.5 1.3E+02 0.0044 20.5 6.5 53 70-140 104-156 (226)
307 2nxw_A Phenyl-3-pyruvate decar 30.4 42 0.0014 29.0 3.8 30 94-127 24-53 (565)
308 2hpv_A FMN-dependent NADH-azor 30.4 51 0.0017 24.0 3.8 40 76-116 2-44 (208)
309 3s99_A Basic membrane lipoprot 30.3 1.7E+02 0.0058 24.0 7.3 63 75-141 149-215 (356)
310 1ii5_A SLR1257 protein; membra 30.2 1E+02 0.0035 21.3 5.2 49 72-140 113-161 (233)
311 3ntv_A MW1564 protein; rossman 30.1 45 0.0015 24.8 3.5 45 91-142 105-150 (232)
312 2pgn_A Cyclohexane-1,2-dione h 30.1 53 0.0018 28.5 4.4 29 95-127 8-36 (589)
313 4h1h_A LMO1638 protein; MCCF-l 29.9 1.2E+02 0.0041 24.7 6.3 64 73-141 10-85 (327)
314 1oj7_A Hypothetical oxidoreduc 29.9 1.2E+02 0.004 25.2 6.3 58 76-142 51-114 (408)
315 1xt8_A Putative amino-acid tra 29.8 96 0.0033 22.9 5.3 53 70-140 148-200 (292)
316 2vsy_A XCC0866; transferase, g 29.4 96 0.0033 25.5 5.7 66 73-141 203-289 (568)
317 2gek_A Phosphatidylinositol ma 29.1 1.2E+02 0.0041 23.2 5.8 34 73-106 18-53 (406)
318 2fzv_A Putative arsenical resi 28.9 14 0.00047 30.2 0.4 40 74-116 57-97 (279)
319 3lbf_A Protein-L-isoaspartate 28.8 33 0.0011 24.5 2.4 44 91-143 109-152 (210)
320 4f11_A Gamma-aminobutyric acid 28.7 1.1E+02 0.0038 24.2 5.7 61 75-142 154-214 (433)
321 2gru_A 2-deoxy-scyllo-inosose 28.2 2.5E+02 0.0084 23.0 8.7 61 75-142 34-102 (368)
322 3mpk_A Virulence sensor protei 28.1 1E+02 0.0036 22.5 5.2 53 71-141 135-187 (267)
323 2xed_A Putative maleate isomer 28.0 2.1E+02 0.0071 22.5 7.2 58 76-143 147-216 (273)
324 4gxh_A Pyrrolidone-carboxylate 27.9 32 0.0011 27.1 2.4 34 110-143 37-71 (216)
325 1ybh_A Acetolactate synthase, 27.9 53 0.0018 28.4 4.0 30 94-127 15-44 (590)
326 3pzy_A MOG; ssgcid, seattle st 27.8 1.3E+02 0.0046 22.0 5.8 67 74-143 6-75 (164)
327 3fro_A GLGA glycogen synthase; 27.6 1.8E+02 0.0062 22.3 6.6 32 75-106 2-36 (439)
328 3tql_A Arginine-binding protei 27.4 1.5E+02 0.0051 20.2 5.8 55 69-140 103-157 (227)
329 3giu_A Pyrrolidone-carboxylate 26.9 44 0.0015 26.3 3.0 34 110-143 37-71 (215)
330 1ozh_A ALS, acetolactate synth 26.8 49 0.0017 28.5 3.6 29 95-127 15-43 (566)
331 1q7r_A Predicted amidotransfer 26.7 1.6E+02 0.0056 21.9 6.2 27 73-106 21-47 (219)
332 1t0i_A YLR011WP; FMN binding p 26.7 31 0.0011 24.8 2.0 29 76-104 1-30 (191)
333 4b9q_A Chaperone protein DNAK; 26.7 12 0.0004 33.1 -0.4 58 87-144 310-376 (605)
334 2nxv_A ATP synthase subunits r 26.4 1.7E+02 0.006 21.8 6.3 39 74-116 14-52 (249)
335 3lma_A Stage V sporulation pro 25.6 43 0.0015 28.5 2.9 33 84-116 50-82 (347)
336 4aty_A Terephthalate 1,2-CIS-d 25.5 25 0.00087 29.4 1.4 38 92-141 244-281 (349)
337 2o57_A Putative sarcosine dime 25.5 27 0.00092 26.5 1.5 46 91-144 115-160 (297)
338 1f4p_A Flavodoxin; electron tr 25.5 1E+02 0.0036 20.8 4.5 37 76-116 1-37 (147)
339 2uz1_A Benzaldehyde lyase; thi 25.3 48 0.0016 28.5 3.2 29 95-127 8-36 (563)
340 3qax_A Probable ABC transporte 25.2 1E+02 0.0036 21.8 4.6 50 72-140 136-185 (268)
341 3fg9_A Protein of universal st 25.1 1.6E+02 0.0054 19.8 5.7 47 90-140 77-125 (156)
342 4dz1_A DALS D-alanine transpor 25.0 46 0.0016 24.3 2.6 57 72-140 134-190 (259)
343 1mkz_A Molybdenum cofactor bio 24.9 2.1E+02 0.007 21.0 6.7 68 74-143 9-78 (172)
344 2i49_A Bicarbonate transporter 24.6 1.2E+02 0.004 25.4 5.4 38 98-140 180-218 (429)
345 1y5e_A Molybdenum cofactor bio 24.5 1.7E+02 0.0057 21.4 5.7 68 74-143 12-81 (169)
346 2vdj_A Homoserine O-succinyltr 24.5 2E+02 0.007 23.5 6.7 67 72-144 32-109 (301)
347 2gm3_A Unknown protein; AT3G01 24.4 1.2E+02 0.0041 20.9 4.7 45 91-140 86-130 (175)
348 3hem_A Cyclopropane-fatty-acyl 24.1 1.5E+02 0.0051 22.6 5.5 43 91-144 105-147 (302)
349 3o21_A Glutamate receptor 3; p 24.0 1.6E+02 0.0054 23.4 5.9 61 75-142 130-193 (389)
350 3h6g_A Glutamate receptor, ion 23.7 1.3E+02 0.0044 23.5 5.2 61 75-142 138-199 (395)
351 2fk8_A Methoxy mycolic acid sy 23.7 48 0.0016 25.5 2.6 43 91-144 123-165 (318)
352 1o63_A ATP phosphoribosyltrans 23.3 95 0.0033 24.8 4.4 24 97-123 114-137 (219)
353 2yln_A Putative ABC transporte 23.2 1.1E+02 0.0039 22.7 4.6 51 70-140 159-209 (283)
354 1jg1_A PIMT;, protein-L-isoasp 23.1 50 0.0017 24.3 2.6 44 91-143 124-167 (235)
355 3k4u_A Binding component of AB 23.1 2E+02 0.0069 20.2 5.8 49 75-141 115-163 (245)
356 3dh0_A SAM dependent methyltra 22.9 69 0.0024 22.8 3.2 43 92-143 73-115 (219)
357 2wya_A Hydroxymethylglutaryl-C 22.9 39 0.0013 28.7 2.1 35 83-117 48-82 (460)
358 3bus_A REBM, methyltransferase 22.7 85 0.0029 23.2 3.8 46 91-144 94-139 (273)
359 2vha_A Periplasmic binding tra 22.7 2.3E+02 0.0077 20.7 6.6 56 71-140 126-181 (287)
360 3ttv_A Catalase HPII; heme ori 22.6 23 0.00079 33.3 0.7 65 72-142 597-669 (753)
361 3otg_A CALG1; calicheamicin, T 22.6 1.3E+02 0.0045 23.3 5.1 32 73-106 18-49 (412)
362 3ha2_A NADPH-quinone reductase 22.5 73 0.0025 23.7 3.4 55 76-140 1-57 (177)
363 1qg8_A Protein (spore coat pol 22.3 63 0.0022 23.4 3.0 24 78-104 3-26 (255)
364 2gel_A Putative GRAM negative 22.3 67 0.0023 24.9 3.3 31 91-121 36-69 (231)
365 2c31_A Oxalyl-COA decarboxylas 22.2 80 0.0027 27.1 4.0 29 95-127 14-42 (568)
366 3mti_A RRNA methylase; SAM-dep 22.1 35 0.0012 23.9 1.4 42 91-141 54-96 (185)
367 2q28_A Oxalyl-COA decarboxylas 22.0 82 0.0028 26.9 4.0 29 95-127 12-40 (564)
368 2zvr_A Uncharacterized protein 22.0 1.2E+02 0.0041 22.9 4.6 45 68-114 13-61 (290)
369 3qi7_A Putative transcriptiona 21.9 3.7E+02 0.013 22.8 8.9 65 74-141 155-232 (371)
370 3l18_A Intracellular protease 21.8 24 0.00083 25.0 0.6 28 75-106 2-30 (168)
371 2v25_A Major cell-binding fact 21.8 2.1E+02 0.0072 20.0 6.5 57 70-140 143-199 (259)
372 1rtt_A Conserved hypothetical 21.7 18 0.00062 26.3 -0.1 38 75-116 6-44 (193)
373 3gnl_A Uncharacterized protein 21.6 72 0.0025 25.4 3.3 52 80-143 48-99 (244)
374 3ho9_A 3-oxoacyl-[acyl-carrier 21.5 1.3E+02 0.0043 25.0 5.0 16 128-143 190-205 (427)
375 1jdp_A NPR-C, atrial natriuret 21.5 64 0.0022 25.8 3.1 61 76-142 155-219 (441)
376 3om0_A Glutamate receptor, ion 21.5 2.2E+02 0.0076 22.2 6.2 61 75-142 139-199 (393)
377 2pju_A Propionate catabolism o 21.5 2.1E+02 0.0073 22.3 6.1 58 76-142 13-71 (225)
378 3ej6_A Catalase-3; heme, hydro 21.4 89 0.003 29.1 4.3 62 72-143 534-599 (688)
379 2aot_A HMT, histamine N-methyl 21.4 2.5E+02 0.0085 21.3 6.4 56 81-143 86-144 (292)
380 2yxe_A Protein-L-isoaspartate 21.4 98 0.0034 22.0 3.8 44 91-143 112-155 (215)
381 3h7m_A Sensor protein; histidi 21.3 1.2E+02 0.0042 20.9 4.2 51 72-140 114-164 (234)
382 1usg_A Leucine-specific bindin 21.1 2.6E+02 0.009 20.8 8.3 28 76-103 3-32 (346)
383 3dlo_A Universal stress protei 21.1 2.1E+02 0.0071 19.6 7.2 49 87-140 73-123 (155)
384 1xs5_A 29 kDa protein, membran 21.1 2.1E+02 0.0072 22.1 5.9 53 74-140 100-170 (241)
385 2an1_A Putative kinase; struct 21.1 1.4E+02 0.0047 23.2 4.9 30 76-106 6-35 (292)
386 3kbr_A Cyclohexadienyl dehydra 21.0 1.1E+02 0.0039 21.4 4.0 49 74-140 124-172 (239)
387 2gpy_A O-methyltransferase; st 20.9 83 0.0029 22.9 3.4 46 92-142 89-134 (233)
388 1d4a_A DT-diaphorase, quinone 20.9 1.2E+02 0.004 23.8 4.4 38 76-116 3-41 (273)
389 1v5e_A Pyruvate oxidase; oxido 20.8 88 0.003 27.1 4.0 28 95-126 8-35 (590)
390 1lst_A Lysine, arginine, ornit 20.6 1.7E+02 0.0058 20.3 4.9 53 72-140 108-160 (239)
391 3bcv_A Putative glycosyltransf 20.6 67 0.0023 23.0 2.7 36 76-116 5-40 (240)
392 1di6_A MOGA, molybdenum cofact 20.6 2.7E+02 0.0091 21.1 6.3 69 75-143 3-75 (195)
393 2q88_A EHUB, putative ABC tran 20.4 90 0.0031 22.3 3.4 49 75-140 124-172 (257)
394 3fpf_A Mtnas, putative unchara 20.1 63 0.0022 26.6 2.8 41 91-142 156-196 (298)
395 3gdh_A Trimethylguanosine synt 20.1 72 0.0025 23.3 2.9 49 80-141 103-151 (241)
396 3eaf_A ABC transporter, substr 20.0 3.1E+02 0.011 21.2 8.5 65 76-140 5-82 (391)
No 1
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=99.96 E-value=2.3e-30 Score=202.26 Aligned_cols=82 Identities=38% Similarity=0.780 Sum_probs=78.2
Q ss_pred hhhhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 63 ~~~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~G-v~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
|+.++|++. ++++|||||+||||++|+++|++||+++|+++| +++++|+++||||+||||+++|+|+++++|||||||
T Consensus 1 m~~~~g~~~-~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaL 79 (156)
T 3nq4_A 1 MNIIKANVA-APDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVAL 79 (156)
T ss_dssp CEEEECCSC-CTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEE
T ss_pred CceecCccC-CCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEe
Confidence 456788885 889999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeeC
Q 032216 142 GAVV 145 (145)
Q Consensus 142 G~VI 145 (145)
||||
T Consensus 80 G~VI 83 (156)
T 3nq4_A 80 GTVI 83 (156)
T ss_dssp EEEE
T ss_pred eeee
Confidence 9997
No 2
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=99.96 E-value=5.2e-30 Score=200.17 Aligned_cols=81 Identities=68% Similarity=1.187 Sum_probs=75.9
Q ss_pred hhhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 64 RHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 64 ~~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
+.++|.+++++++|||||+||||++|+++|++||+++|+++|++ ++|+++|||||||||+++|+|+++++|||||||||
T Consensus 2 ~~~~g~~~~~~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~-~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~ 80 (156)
T 1c2y_A 2 NELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVN-EDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGA 80 (156)
T ss_dssp EEECCCSSSCTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCC-SCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred ccccccccCCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC-CceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 34567765578899999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred eC
Q 032216 144 VV 145 (145)
Q Consensus 144 VI 145 (145)
||
T Consensus 81 VI 82 (156)
T 1c2y_A 81 VV 82 (156)
T ss_dssp CC
T ss_pred cc
Confidence 98
No 3
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=99.96 E-value=4.5e-30 Score=199.89 Aligned_cols=80 Identities=40% Similarity=0.669 Sum_probs=75.5
Q ss_pred hhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 65 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 65 ~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
.++|.+ +++++|||||+||||++|+++|++||+++|+++|+++++|+++|||||||||+++|+|+++++||||||||||
T Consensus 3 ~~~g~~-~~~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~V 81 (154)
T 1hqk_A 3 IYEGKL-TAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVL 81 (154)
T ss_dssp EECCCS-CCTTCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEE
T ss_pred cccCCc-CCCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 356665 4788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 032216 145 V 145 (145)
Q Consensus 145 I 145 (145)
|
T Consensus 82 I 82 (154)
T 1hqk_A 82 I 82 (154)
T ss_dssp E
T ss_pred e
Confidence 7
No 4
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=99.96 E-value=4.7e-30 Score=199.92 Aligned_cols=80 Identities=39% Similarity=0.770 Sum_probs=75.5
Q ss_pred hhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 65 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 65 ~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
.++|.+ +++++|||||+||||++|+++|++||+++|+++|+++++|+++|||||||||+++|+|+++++||||||||||
T Consensus 3 ~~~g~~-~~~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 81 (154)
T 1rvv_A 3 IIQGNL-VGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTV 81 (154)
T ss_dssp EECCCS-CCTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEE
T ss_pred cccCCc-CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 355665 4788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 032216 145 V 145 (145)
Q Consensus 145 I 145 (145)
|
T Consensus 82 I 82 (154)
T 1rvv_A 82 I 82 (154)
T ss_dssp E
T ss_pred e
Confidence 7
No 5
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=99.96 E-value=2.2e-29 Score=196.74 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeeeC
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVV 145 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~VI 145 (145)
+++++|||||+||||++|+++|++||+++|+++|+++++|+++||||+||||+++|+|+++++|||||||||||
T Consensus 7 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VI 80 (158)
T 1di0_A 7 NKTSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVI 80 (158)
T ss_dssp --CCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECC
T ss_pred CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccc
Confidence 46789999999999999999999999999999999988999999999999999999999999999999999998
No 6
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=99.96 E-value=2.2e-29 Score=196.50 Aligned_cols=74 Identities=30% Similarity=0.408 Sum_probs=72.0
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeeeC
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVV 145 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~VI 145 (145)
+++++|||||+||||++|+++|++||+++|+++|+++++|+++||||+||||+++|+|+++++|||||||||||
T Consensus 8 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VI 81 (157)
T 2obx_A 8 DYETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVV 81 (157)
T ss_dssp SCCCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECC
T ss_pred CCCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccc
Confidence 57789999999999999999999999999999999988999999999999999999999999999999999998
No 7
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=99.95 E-value=6.5e-29 Score=194.55 Aligned_cols=74 Identities=38% Similarity=0.463 Sum_probs=71.7
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeeeC
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVV 145 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~-~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~VI 145 (145)
+++++|||||+||||++|+++|++||+++|++ +|+++++|+++||||+||||+++|+|+++++|||||||||||
T Consensus 14 ~~~~~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VI 88 (159)
T 1kz1_A 14 KGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLI 88 (159)
T ss_dssp CCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEE
T ss_pred CCCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 46789999999999999999999999999999 999999999999999999999999999999999999999997
No 8
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=99.95 E-value=2.2e-28 Score=192.85 Aligned_cols=74 Identities=27% Similarity=0.493 Sum_probs=71.1
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh-----cCCCcEEEEeeeeC
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK-----SGKYTAVLCIGAVV 145 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~-----s~~yDAVIaLG~VI 145 (145)
+++++|||||+||||++|+++|++||+++|+++|+.+++|+++||||+||||+++|+|++ +++|||||||||||
T Consensus 13 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VI 91 (168)
T 1ejb_A 13 DGSKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLI 91 (168)
T ss_dssp CCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEE
T ss_pred CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEecccc
Confidence 457799999999999999999999999999999999999999999999999999999998 78999999999997
No 9
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=99.94 E-value=6.2e-27 Score=182.80 Aligned_cols=68 Identities=28% Similarity=0.448 Sum_probs=65.7
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhc-----CCCcEEEEeeeeC
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS-----GKYTAVLCIGAVV 145 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s-----~~yDAVIaLG~VI 145 (145)
++|||||+||||++|+++|++||+++|+++| ++|+++|||||||||+++|+|+++ ++|||||||||||
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G---~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VI 84 (157)
T 2i0f_A 12 APHLLIVEARFYDDLADALLDGAKAALDEAG---ATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVI 84 (157)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHHHHHHTT---CEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEE
T ss_pred CcEEEEEEEeCcHHHHHHHHHHHHHHHHHcC---CCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeee
Confidence 4899999999999999999999999999999 489999999999999999999998 9999999999997
No 10
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=99.94 E-value=1.5e-26 Score=181.19 Aligned_cols=70 Identities=33% Similarity=0.525 Sum_probs=66.7
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeeeC
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVV 145 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~VI 145 (145)
+++++|||||+||||++|+++|++||+++|+++|++ +|+++||||+||||+++|+|++ +|||||||||||
T Consensus 14 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~--~i~v~~VPGafEiP~aak~la~--~yDavIaLG~VI 83 (160)
T 2c92_A 14 DASGVRLAIVASSWHGKICDALLDGARKVAAGCGLD--DPTVVRVLGAIEIPVVAQELAR--NHDAVVALGVVI 83 (160)
T ss_dssp CCTTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCS--CCEEEEESSGGGHHHHHHHHHT--SCSEEEEEEEEE
T ss_pred CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC--ceEEEECCcHHHHHHHHHHHHh--cCCEEEEEeeee
Confidence 467899999999999999999999999999999986 8999999999999999999996 599999999997
No 11
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Probab=99.87 E-value=1.8e-27 Score=192.49 Aligned_cols=74 Identities=36% Similarity=0.596 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh--------------------
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK-------------------- 131 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~-------------------- 131 (145)
+++++|||||++|||++|+++|++||+++|+++|+.+++|++++|||+||||+++|+|++
T Consensus 12 ~g~~lriaIV~arfn~~I~~~Ll~GA~~~L~~~Gv~~~~I~v~~VPGa~ElP~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T 1c41_A 12 DGSALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLG 91 (200)
Confidence 457899999999999999999999999999999999999999999999999999999997
Q ss_pred ----------------cCCCcEEEEeeeeC
Q 032216 132 ----------------SGKYTAVLCIGAVV 145 (145)
Q Consensus 132 ----------------s~~yDAVIaLG~VI 145 (145)
+++|||||||||||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~DAVIaLG~VI 121 (200)
T 1c41_A 92 SSTTDLTALPTTTASSTGPFDALIAIGVLI 121 (200)
Confidence 57899999999997
No 12
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=99.90 E-value=1.5e-24 Score=169.59 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=62.2
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
+|||||+||||+ +.|++||+++|+++|+.++ |+++|||||||||+++|+|+++++||||||||||
T Consensus 3 ~ri~IV~arfn~---~~Ll~gA~~~L~~~G~~~~-i~~~~VPGafEiP~aak~la~~~~yDavIaLG~V 67 (156)
T 2b99_A 3 KKVGIVDTTFAR---VDMASIAIKKLKELSPNIK-IIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMP 67 (156)
T ss_dssp CEEEEEEESSCS---SCCHHHHHHHHHHHCTTCE-EEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECC
T ss_pred cEEEEEEEecch---HHHHHHHHHHHHHcCCCCe-EEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 699999999999 8999999999999999865 8889999999999999999999999999999997
No 13
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=96.19 E-value=0.02 Score=43.26 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=49.9
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
.+..+||++...+.......+++|+.+.++++|+. +.+....+..+--...-+.+.+.++||||..+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQ---VLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCC---EEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 45568999999988888889999999999999984 66777777655554443444567899999865
No 14
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=96.13 E-value=0.025 Score=42.91 Aligned_cols=68 Identities=9% Similarity=-0.092 Sum_probs=48.2
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
..+..+||++...+.......+++|+.+.++++|+. +.+....+..+-.. .++.+. +.++||||..+.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 73 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYE---ALVATSQNSRISEREQILEFV-HLKVDAIFITTL 73 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE---EEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECS
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCE---EEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecC
Confidence 355679999999998888889999999999999983 55555554444332 233343 578999998764
No 15
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=96.13 E-value=0.025 Score=43.16 Aligned_cols=69 Identities=6% Similarity=-0.030 Sum_probs=51.7
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.++..+||++...........+++|+.+.++++|+. +.++...+..|-....-..+.+.++||||..+.
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYS---VLLANTAEDIVREREAVGQFFERRVDGLILAPS 73 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 355679999999888888888999999999999973 666766666555443333445679999998764
No 16
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.02 E-value=0.012 Score=44.58 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=49.1
Q ss_pred CCCCCEEEEEEee-----ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvAr-----fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+..+||+|... ++......+++|+.++++++|+. +.+......-|.-..+-+.+.+.++||||.++.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYA---LYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCE---EEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 3556799999999 77777788999999999999973 444444444444333444455789999998764
No 17
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=95.99 E-value=0.037 Score=41.95 Aligned_cols=68 Identities=10% Similarity=0.059 Sum_probs=52.3
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
++..+||+|...+.......+++|..+.++++|+. +.+....+..+-....-+.+.+.++||||..+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 72 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYI---GVLFDANADIEREKTLLRAIGSRGFDGLILQSF 72 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCE---EEEEECTTCHHHHHHHHHHHHTTTCSEEEEESS
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 45679999999998888889999999999999973 666666665554443333445679999998864
No 18
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=95.67 E-value=0.046 Score=41.67 Aligned_cols=68 Identities=7% Similarity=0.069 Sum_probs=48.6
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCC-eEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEEN-IDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~-I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..+..+||++...+....-..+++|+.++++++|+ + +.+....+..+-....-..+.+.++||||..+
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~---~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGY---TALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC---EEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCC---CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 35567999999998888888899999999999997 3 44444444444443333334567999999864
No 19
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.66 E-value=0.038 Score=42.71 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=50.8
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+..+||+|...+....-..+++|+.++++++|+. +.+....+.-|-....-+.+...++||||..+.
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTD---VLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCC---EEEEECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 44568999999888777788999999999999984 677777776666554444455789999998764
No 20
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=95.65 E-value=0.054 Score=40.47 Aligned_cols=65 Identities=6% Similarity=0.027 Sum_probs=49.5
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+||++...++......+++|+.+.++++|.. +.++...+..|-....-+.+.+.++||||..+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 67 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQ---LLIASSDDQPDSERQLQQLFRARRCDALFVASC 67 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 58999999998888889999999999999984 666666665554433333344578999998764
No 21
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.46 E-value=0.062 Score=40.64 Aligned_cols=66 Identities=11% Similarity=-0.029 Sum_probs=47.4
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG 142 (145)
.+..+||+|...++......+++|+.+.++++|+. +.+....+..+--. .++.+ ...++||||..+
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~ 69 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGT---AIALDAGRNDQTQVSQIQTL-IAQKPDAIIEQL 69 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHH-HHHCCSEEEEES
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeC
Confidence 34569999999988888889999999999999973 55555444433222 22333 346899999765
No 22
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=95.45 E-value=0.063 Score=41.19 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=48.5
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.++..+||+|. .++...-..+++|+.+.++++|+. +.+....+.-+---.++.| .+.++||||..+.
T Consensus 9 ~~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~ 75 (289)
T 3k9c_A 9 QASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYD---VMLSAVAPSRAEKVAVQAL-MRERCEAAILLGT 75 (289)
T ss_dssp ----CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCE---EEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETC
T ss_pred cCCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECC
Confidence 34556899999 888778888999999999999974 6666666655533344445 4578999998764
No 23
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=95.33 E-value=0.045 Score=41.58 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=48.1
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc--cchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG--SFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG--AfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
++..+||+|....+...-..+++|+.+.++++|+. +.++...+ ..+--. .++.+. +.++||||..+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~ 72 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVN---LRVLEAGGYPNKSRQEQQLALCT-QWGANAIILGTV 72 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCE---EEEEECSSTTCHHHHHHHHHHHH-HHTCSEEEECCS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 45679999999998888889999999999999983 66666665 333332 223333 468999998753
No 24
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=95.19 E-value=0.022 Score=43.60 Aligned_cols=69 Identities=16% Similarity=0.043 Sum_probs=48.2
Q ss_pred CCCCCEEEEEEeeecH--HHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARFNE--LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~--~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.++..+||+|...++. .....+++|+.+.++++|.. +.+....+.-+-...+..++.+.++||||..+.
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYH---LVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCE---EEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCE---EEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 3556789999997653 45667999999999999973 555555544444444555566789999998763
No 25
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=95.17 E-value=0.035 Score=42.82 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=49.4
Q ss_pred CCCCEEEEEEee-----ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvAr-----fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+..+||+|... +....-..+++|+.++++++|.. +.+....+.-|-....-+.+.+.++||||.++.
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 92 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYS---TRMTVSENSGDLYHEVKTMIQSKSVDGFILLYS 92 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCE---EEECCCSSHHHHHHHHHHHHHTTCCSEEEESSC
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 445689999998 77777778999999999999973 555555554444444444456789999998764
No 26
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=95.15 E-value=0.062 Score=40.54 Aligned_cols=65 Identities=3% Similarity=-0.023 Sum_probs=49.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+||+|...+.......+++|..++++++|+. +.++...+..|-....-+.+.+.++||||..++
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 80 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYS---MLLTSTNNNPDNERRGLENLLSQHIDGLIVEPT 80 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHHCCCCEEEEecc
Confidence 68999999988878888999999999999983 666666665554443333334679999998764
No 27
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=95.14 E-value=0.092 Score=40.05 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=45.7
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
++..+||++...+....-..+++|+.+.++++|.. +.+....+..+-- -.++.+. +.++||||..+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 73 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYR---ILLCNTESDLARSRSCLTLLS-GKMVDGVITMDA 73 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHTHHHH-TTCCSEEEECCC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCC
Confidence 45668999999887777888999999999999973 4444433322211 1233343 578999998753
No 28
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=94.95 E-value=0.045 Score=42.02 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCCCCEEEEEEeeecHHHHH-HHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARFNELVTK-LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~-~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+..+||+|...+....-. .+++|+.+.++++|+. +.+....+..|-....-+.+.+.++||||..+.
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKT---ILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 34556899999877644444 7899999999999974 666666665555444333445679999998764
No 29
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=94.94 E-value=0.066 Score=41.17 Aligned_cols=67 Identities=10% Similarity=-0.061 Sum_probs=47.5
Q ss_pred CCCCEEEEEEe----eecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVA----RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvA----rfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
++..+||+|.. .+....-..+++|+.+.++++|.. +.+..... -+-...+.+++.+.++||||..+.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLD---LLLIPDEP-GEKYQSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCE---EEEEEECT-TCCCHHHHHHHHHTCCSEEEECSC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCE---EEEEeCCC-hhhHHHHHHHHHcCCCCEEEEeCC
Confidence 45568999998 677667778999999999999974 55655544 222233334445679999998764
No 30
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=94.63 E-value=0.1 Score=39.23 Aligned_cols=67 Identities=16% Similarity=0.039 Sum_probs=42.9
Q ss_pred CCCCEEEEEEee--ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvAr--fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++... +.......+++|+.+.++++|.. +.+....+..|-- -.++.+. +.++||||..+.
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQ---LLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCE---EEEECCTTSHHHHHHHHHHHH-HTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecC
Confidence 445689999988 77667778999999999999973 4444333222211 2334444 468999998763
No 31
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=94.59 E-value=0.13 Score=38.88 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=44.2
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
++..+||++...+.......+++|+.+.++++|.. +.+....+..|-- -.++.+. +.++||||..+.
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 72 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYT---LILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCS 72 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECS
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCe---EEEEcCCCChHHHHHHHHHHH-hCCCCEEEEEec
Confidence 45568999998887777788999999999999973 4444333322221 1234443 568999998753
No 32
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=94.56 E-value=0.18 Score=38.49 Aligned_cols=67 Identities=6% Similarity=0.006 Sum_probs=46.0
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchH-HHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfEL-Plaak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++...+....-..+++|+.+.++++|+. +.+....+..+- --.++.+. +.++||||..+.
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 85 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQ---LLIACSEDQPDNEMRCIEHLL-QRQVDAIIVSTS 85 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCE---EEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 45568999999887777788999999999999973 444433332221 12234444 468999998763
No 33
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=94.51 E-value=0.1 Score=39.91 Aligned_cols=67 Identities=13% Similarity=-0.009 Sum_probs=46.2
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH----HHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV----VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl----aak~La~s~~yDAVIaLG~ 143 (145)
++..+||++...+....-..+++|+.++++++|.. +.+....+..+--. .++.+. +.++||||..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~ 76 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRH---VVVATGCGESTPREQALEAVRFLI-GRDCDGVVVISH 76 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCE---EEEECCCSSSCHHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCE---EEEEeCCCchhhhhhHHHHHHHHH-hcCccEEEEecC
Confidence 45568999998887777778999999999999973 44444433333222 344444 568999998763
No 34
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=94.46 E-value=0.054 Score=40.39 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=46.4
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaLG 142 (145)
.|||+|...........+++|+.+.++++|+. +.+.......+..- .++.+.+.+++||||..+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~ 67 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVT---LLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAP 67 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCE---EEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 48999999888888888999999999999973 44444333343332 445566555599999876
No 35
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=94.42 E-value=0.11 Score=40.01 Aligned_cols=66 Identities=3% Similarity=-0.037 Sum_probs=46.7
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
+..+||+|........-..+++|+.+.++++|+. +.+....+..+--. .++.+.+ .++||||..+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~ 68 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYK---TDLQYADDDIPNQLSQIENMVT-KGVKVLVIASI 68 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCS
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCE---EEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 4568999999987667777999999999999973 55665444443332 2333433 57999998753
No 36
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=94.39 E-value=0.076 Score=40.82 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=47.1
Q ss_pred CCCCEEEEEEe-----eecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVA-----RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvA-----rfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+..+||+|.. .+....-..+++|+.++++++|.. +.+....+..|....+-+.+.+.++||||..+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYG---TQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCE---EEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCE---EEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 44568999993 444555667999999999999973 445544444444444444456789999998763
No 37
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=94.38 E-value=0.094 Score=40.43 Aligned_cols=66 Identities=8% Similarity=-0.044 Sum_probs=45.3
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+||+|...+....-..+++|+.++++++|+. +.+....+.-+--...-+.+.+.++||||..+.
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAK---VFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCE---EEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 358999998876666677999999999999973 555555544443332222233568999998763
No 38
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=94.37 E-value=0.18 Score=38.64 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
++..+||+|+..+....-..+++|+.++++++|.. +.+....+..+-- -.++.+. +.++||||..+.
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~ 81 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYN---IILSNSDQNMEKELHLLNTML-GKQVDGIVFMGG 81 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecC
Confidence 45568999999888777888999999999999973 4444433332221 1233443 568999998763
No 39
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=94.34 E-value=0.32 Score=38.45 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=48.8
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCC-CCeEE--EEecccc-hHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKE-ENIDV--VWVPGSF-EIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~-e~I~v--v~VPGAf-ELPlaak~La~s~~yDAVIaLG~ 143 (145)
++..||||+.---|..+ |...+|.++.|++.|..+ +|+++ .+--|-. .+.-.+++|. +.++|.||++|.
T Consensus 6 ~~~~~igi~q~~~hp~l-d~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~-~~~~DlIiai~t 78 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPAL-DATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVGIAT 78 (302)
T ss_dssp -CCEEEEEEESCCCHHH-HHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHH-TTCCSEEEEESH
T ss_pred cCCceEEEEEeecChhH-HHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHH-hcCCcEEEEcCC
Confidence 56779999987778776 678999999999999753 34544 4445532 2344455555 468999999873
No 40
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=94.33 E-value=0.12 Score=38.71 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=44.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
..+||+|...+.......+++|+.+.++++|.. +.+....+..+--. .++.+ .+.++||||..+.
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgii~~~~ 68 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQ---LLLGYSDYSIEQEEKLLSTF-LESRPAGVVLFGS 68 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCE---ECCEECTTCHHHHHHHHHHH-HTSCCCCEEEESS
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCE---EEEEcCCCCHHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 358999999887777778999999999999974 33443333332222 23334 3578999998763
No 41
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=94.32 E-value=0.037 Score=41.97 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=45.9
Q ss_pred CCCCCEEEEEEe-eecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVA-RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvA-rfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+..+||++.. .+.......+++|+.++++++|.. +.++...+..+--...-+.+.+.++||||..+.
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYN---YNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTC---SEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCe---EEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 355678999998 677777778999999999999985 455544443322111222334679999998764
No 42
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=94.26 E-value=0.11 Score=41.00 Aligned_cols=67 Identities=9% Similarity=0.014 Sum_probs=48.3
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++...+....-..+++|+.+.++++|.. +.+....+ -|-....-..+...++||||..+.
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQ---MLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE---EEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCE---EEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 44568999999988778888999999999999974 66666665 444333333334568999998753
No 43
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=94.20 E-value=0.24 Score=36.86 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=44.2
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
.+||+|........-..+++|..+.++++|.. +.+....+..+--. .++.+ .+.++||||..++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYD---PIMMESQFSPQLVAEHLGVL-KRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHH-HTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCE---EEEEeCCCcHHHHHHHHHHH-HhcCCCEEEEecC
Confidence 47999998877777778999999999999973 44444333222222 23333 4578999998764
No 44
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=94.09 E-value=0.19 Score=39.37 Aligned_cols=66 Identities=17% Similarity=0.052 Sum_probs=47.4
Q ss_pred CCCCEEEEEEee--ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEee
Q 032216 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 73 ~~~lRIaIVvAr--fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG 142 (145)
.+..+||++... +....-..+++|+.++++++|+. +.+....+..|--. .++.| ...++||||..+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~ 127 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQ---LLLADGKHSAEEERQAIQYL-LDLRCDAIMIYP 127 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCE---EEEEECTTSHHHHHHHHHHH-HHTTCSEEEECC
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHH-HhCCCCEEEEeC
Confidence 456789999998 77667778999999999999973 55555544444433 33444 356899999875
No 45
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=93.91 E-value=0.27 Score=38.63 Aligned_cols=65 Identities=5% Similarity=-0.032 Sum_probs=48.2
Q ss_pred CCEEEEEEeeecH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~-~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s-~~yDAVIaLG 142 (145)
..+||+|...+.. ..-..+.+|+.+.++++|+. +.+....+..+-- -.++.+.++ .++||||..+
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLD---LRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCe---EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4699999998865 67788999999999999983 5666555544432 234556665 7999999875
No 46
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=93.86 E-value=0.26 Score=37.25 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=44.1
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
.+||++...+.......+++|+.+.++++|.. +.+....+..+-- -.++.+. +.++||||..+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYE---ATIFDSQNDTAKESAHFDAII-AAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecC
Confidence 48999998887777778999999999999973 4444433332222 2234444 468999998653
No 47
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=93.84 E-value=0.26 Score=38.58 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=46.4
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++...+....-..+++|..+.++++|.. +.+....+..+-- -.++.+. ..++||||..+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYN---MILANSDNDVEKEEKVLETFL-SKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE---EEEEECCCChHHHHHHHHHHH-hCCCCEEEEeCC
Confidence 45568999998887777778999999999999973 5455444333221 2334444 468999998763
No 48
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=93.79 E-value=0.11 Score=39.70 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=42.0
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv-~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++...+.......+++|+.+.++++|+. +.+. ...+..|-- -.++.+. +.++||||..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 74 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYN---LIIVYSGSADPEEQKHALLTAI-ERPVMGILLLSI 74 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCE---EEEEC----------CHHHHHH-SSCCSEEEEESC
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCe---EEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEecc
Confidence 45568999998887777778999999999999973 4333 222222211 1234443 568999998763
No 49
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.75 E-value=0.27 Score=38.95 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=46.8
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHH-HHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV-AQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPla-ak~La~s~~yDAVIaLG~ 143 (145)
.+...||++...+....-..+++|..+.++++|.. +.+....+..|--.. ++.| ...++||||..+.
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQ---LLLGYTAYSPEREEQLVETM-LRRRPEAMVLSYD 135 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHH-HHTCCSEEEEECS
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 44568999999888777788999999999999984 555555444443322 2333 3568999998763
No 50
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=93.71 E-value=0.27 Score=38.40 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=44.9
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++...+....-..+++|+.+.++++|.. +.+....+..|-- -.++.|. +.++|||| .+.
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI-~~~ 124 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYT---LFLCNTDDDKEKEKTYLEVLQ-SHRVAGII-ASR 124 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEE-EET
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHH-hCCCCEEE-ECC
Confidence 44568999998877666778999999999999973 5555444333322 2234444 46899999 763
No 51
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=93.64 E-value=0.21 Score=37.71 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=46.2
Q ss_pred CCCCCEEEEEEeee-cHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEec-ccchHHH---HHHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARF-NELVTKLLLEGALETFKKY-SVKEENIDVVWVP-GSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArf-N~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VP-GAfELPl---aak~La~s~~yDAVIaLG~ 143 (145)
..+..+||++...+ ....-..+++|+.+.++++ |.. +.+.... ...+..- .++.+ ...++||||..+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~---~~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiii~~~ 78 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFN---ISANITHYDPYDYNSFVATSQAV-IEEQPDGVMFAPT 78 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGC---EEEEEEEECSSCHHHHHHHHHHH-HTTCCSEEEECCS
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCC---eEEEEEcCCCCCHHHHHHHHHHH-HhcCCCEEEECCC
Confidence 35667999999998 6667778999999999999 763 5665542 2222222 23333 4579999998764
No 52
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=93.62 E-value=0.17 Score=38.83 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=44.7
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEec--ccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP--GSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP--GAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
..+||+|....+......+++|+.+.++++|+. +.+.... +..+--. .++.+. ..++||||..+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVD---LQILAPPGANDVPKQVQFIESAL-ATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCE---EEEECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcE---EEEECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 569999999987777888999999999999974 4444333 2222222 233333 467999997653
No 53
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=93.59 E-value=0.31 Score=38.82 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=44.3
Q ss_pred CCCEEEEEEe--eecH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 74 EGLRFALVVA--RFNE-LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 74 ~~lRIaIVvA--rfN~-~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
+..+||+|.. ..++ .....+.+|..+.++++|+. +.++.....-+.--.++.|++ .++|+||+.|.
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~---~~~~~~~~~~~~~~~l~~l~~-~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAK---CKYVTASTDAEYVPSLSAFAD-ENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCE---EEEEECCSGGGHHHHHHHHHH-TTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCe---EEEEeCCCHHHHHHHHHHHHH-cCCCEEEECCh
Confidence 4579999996 5554 56677889999999999974 444333222222234666664 57999999863
No 54
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=93.55 E-value=0.23 Score=39.41 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=45.0
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
.+..+||+|...+....-..+++|+.+.++++|.. +.+....+..|--. .++.|. ..++||||..+.
T Consensus 64 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 131 (348)
T 3bil_A 64 SRSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLA---TIITNSNEDATTMSGSLEFLT-SHGVDGIICVPN 131 (348)
T ss_dssp ----CEEEEESCSSSHHHHHHHHHHHHHHHHTTCC---EEEEECTTCHHHHHHHHHHHH-HTTCSCEEECCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCC
Confidence 34457999998887777778999999999999984 55555444333222 234443 568999998763
No 55
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=93.50 E-value=0.2 Score=39.29 Aligned_cols=68 Identities=9% Similarity=-0.030 Sum_probs=46.7
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+...||++...+....-..+++|+.+.+.++|.. +.+....+..+--...-+.+...++||||..+.
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQ---MLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 44568999998877666677999999999999974 555555555444433323334679999998763
No 56
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=93.39 E-value=0.24 Score=39.00 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=47.3
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHH-HHHHhhcCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV-AQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPla-ak~La~s~~yDAVIaLG~ 143 (145)
..+..+||++...+....-..+++|+.++++++|+. +.+....+..|--.. ++.+ .+.++||||..+.
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQ---PVVGVTDYLPEKEEKVLYEM-LSWRPSGVIIAGL 133 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSE---EEEEECTTCHHHHHHHHHHH-HTTCCSEEEEECS
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEECC
Confidence 345568999998877666678999999999999974 555554444443322 2333 4578999998763
No 57
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=93.19 E-value=0.2 Score=37.99 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=43.8
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
++..+||++... ....-..+++|+.+.++++|+. +.+....+..|-- -.++.+. +.++||||..+.
T Consensus 6 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 72 (288)
T 2qu7_A 6 GRSNIIAFIVPD-QNPFFTEVLTEISHECQKHHLH---VAVASSEENEDKQQDLIETFV-SQNVSAIILVPV 72 (288)
T ss_dssp -CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCE---EEEEECTTCHHHHHHHHHHHH-HTTEEEEEECCS
T ss_pred CCCCEEEEEECC-CCchHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHH-HcCccEEEEecC
Confidence 445689999988 6566677999999999999973 4444433332221 2334444 468999998753
No 58
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=93.17 E-value=0.26 Score=37.45 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=43.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
..+||++........-..+++|+.++++++|+. +.++.. +.-+-- -.++.+.+ .++||||..+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~-~~~~~~~~~i~~l~~-~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE---VIKIAV-PDGEKTLNAIDSLAA-SGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEE---EEEEEC-CSHHHHHHHHHHHHH-TTCCEEEEECS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCE---EEEeCC-CCHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 468999999887777788999999999999973 433332 222211 22344444 46999998753
No 59
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=92.93 E-value=0.33 Score=37.84 Aligned_cols=68 Identities=13% Similarity=-0.033 Sum_probs=46.7
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcC-CCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSG-KYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~-~yDAVIaLG~ 143 (145)
++..+||+|...+....-..+++|+.+.++++|+. +.+....+..+-- -.++.+.+.+ ++||||..+.
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLP---YVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCC---EEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCE---EEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 34568999999887777788999999999999984 5555444333322 2344455433 2999998753
No 60
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=92.88 E-value=0.57 Score=35.84 Aligned_cols=68 Identities=16% Similarity=0.010 Sum_probs=46.2
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhc-CCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s-~~yDAVIaL 141 (145)
...||+++....+....+.-.+|..+.|+++|+..+...++...-..|-- -+++++++. .++|||+|.
T Consensus 125 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 194 (294)
T 3qk7_A 125 GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITD 194 (294)
T ss_dssp TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEES
T ss_pred CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEEC
Confidence 34599999988776666666899999999999874443344444333332 234555554 689999985
No 61
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=92.88 E-value=0.29 Score=37.63 Aligned_cols=65 Identities=8% Similarity=-0.081 Sum_probs=44.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
..+||++...........+++|+.++++++|+. +.+....+..+-- -.++.|. +.++||||..+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---l~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 67 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT---LKIADGQQKQENQIKAVRSFV-AQGVDAIFIAPV 67 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE---EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 368999999888888888999999999999973 4444433322221 2234444 457999998753
No 62
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=92.84 E-value=0.39 Score=36.42 Aligned_cols=63 Identities=6% Similarity=-0.055 Sum_probs=42.8
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCC-CCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSV-KEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv-~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG 142 (145)
.+||+|...+.......+++|+.+.++++|. . +.+....+..+-- -.++.+. +.++||||..+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~---~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~ 67 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ---LLMNDSQNDQSKQNDQIDVLL-AKGVKALAINL 67 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeE---EEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeC
Confidence 4799999888777778899999999999995 3 4444333322221 1233343 46899999865
No 63
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=92.81 E-value=0.21 Score=39.05 Aligned_cols=67 Identities=6% Similarity=0.136 Sum_probs=43.1
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++...+....-..+++|+.+.++++|.. +.+....+..+--. .++.+ ...++||||..+.
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYN---IILSNSDQNQDKELHLLNNM-LGKQVDGIIFMSG 125 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCE---EEEEECCSHHHHHHHHHHHT-SCCSSCCEEECCS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE---EEEEeCCCChHHHHHHHHHH-HhCCCcEEEEecC
Confidence 45568999998876666777999999999999973 44444333222221 23333 3578999998763
No 64
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=92.78 E-value=0.17 Score=38.57 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaLG~ 143 (145)
+.+|++|........-..+++|+.+.++++|+. +.++ .+...+.-- .++.+. ..++||||..++
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~-~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 70 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVT---VEYR-GAAQYDIQEQITVLEQAI-AKNPAGIAISAI 70 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCE---EEEE-ECSSSCHHHHHHHHHHHH-HHCCSEEEECCS
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCE---EEEe-CCCcCCHHHHHHHHHHHH-HhCCCEEEEcCC
Confidence 569999999988888888999999999999973 3332 233333222 223333 468999998763
No 65
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=92.78 E-value=0.069 Score=40.29 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
++..+||++...++...-..+++|+.++++++|+. +.++... ..|-- -.++.| .+.++|||| ++.
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~-~~~~~~~~~~~l-~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYR---LSVIDSL-TSQAGTDPITSA-LSMRPDGII-IAQ 68 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCE---EEEECSS-SSCSSSCHHHHH-HTTCCSEEE-EES
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCE---EEEEeCC-CchHHHHHHHHH-HhCCCCEEE-ecC
Confidence 44568999998888777788999999999999973 4454444 22211 123333 467999999 764
No 66
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=92.65 E-value=0.56 Score=36.77 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=45.7
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
.+..+||++...+....-..+++|+.+.++++|.. +.+....+..|-- -.++.|. ..++||||..+.
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 123 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYT---LILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCS 123 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHH-cCCCCEEEEeCC
Confidence 44568999998877777778999999999999973 4444333332221 1234443 568999998763
No 67
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=92.54 E-value=0.69 Score=35.61 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=41.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEE--EecccchH-HHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV--WVPGSFEI-GVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv--~VPGAfEL-Plaak~La~s~~yDAVIaLG 142 (145)
.+||||.. .+...-..+++|..+.|.++|....++.+. ..-+..|- .-.+++| .+.++|+||++|
T Consensus 3 ~~Igvi~~-~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l-~~~~vDgII~~~ 70 (295)
T 3lft_A 3 AKIGVLQF-VSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQL-VANGNDLVVGIA 70 (295)
T ss_dssp EEEEEEEC-SCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHH-TTSSCSEEEEES
T ss_pred eEEEEEEc-cCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHH-HhcCCCEEEECC
Confidence 47998843 443444568999999999999832355443 33343332 2233444 467999999986
No 68
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=92.30 E-value=0.26 Score=37.11 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCCEEEEEEeeec--HHHHHHHHHHHHHHHHHCCCCCCCeEEEEec--ccchH-HHHHHHHhhcCCCcEEEEeee
Q 032216 74 EGLRFALVVARFN--ELVTKLLLEGALETFKKYSVKEENIDVVWVP--GSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 74 ~~lRIaIVvArfN--~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP--GAfEL-Plaak~La~s~~yDAVIaLG~ 143 (145)
+..+||+|...+. ...-..+++|+.+.++++|.. +.++... +..+- --.++.+. +.++||||..+.
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 74 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIK---LEFMAPEKEEDYLVQNELIEEAI-KRKPDVILLAAA 74 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCE---EEECCCSSTTCHHHHHHHHHHHH-HTCCSEEEECCS
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCE---EEEecCCCCCCHHHHHHHHHHHH-HhCCCEEEEeCC
Confidence 4568999998876 666777999999999999973 3333221 22221 12344444 468999998753
No 69
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=92.20 E-value=0.64 Score=36.02 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=43.5
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCC-CCCeEE--EEecccchHH-HHHHHHhhcCCCcEEEEee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVK-EENIDV--VWVPGSFEIG-VVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~-~e~I~v--v~VPGAfELP-laak~La~s~~yDAVIaLG 142 (145)
++..+||||..--|. .-..+++|..++|.++|.. ..++.+ ...-+..|-= -.+++|. +.++|+||++|
T Consensus 6 ~~t~~IGvi~~~~~p-~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vDgII~~~ 77 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHP-ALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVGIA 77 (302)
T ss_dssp -CCEEEEEEESSCCH-HHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHH-HTCCSEEEEES
T ss_pred cCCcEEEEEEeccCh-hHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECC
Confidence 455689998644444 4566899999999999972 123444 3444443322 2334443 67999999886
No 70
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=91.97 E-value=0.65 Score=35.19 Aligned_cols=64 Identities=9% Similarity=0.001 Sum_probs=47.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhc-CCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS-GKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s-~~yDAVIaL 141 (145)
...||+++...-+....+.-.+|..+.|+++|+..+ .. ...|.++ --+++.++++ .++|||+|.
T Consensus 121 G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~--~~-~~~~~~~-~~~~~~~l~~~~~~~ai~~~ 185 (277)
T 3hs3_A 121 KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYL--LE-ETPENNP-YISAQSALNKSNQFDAIITV 185 (277)
T ss_dssp TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE--EE-ECCSSCH-HHHHHHHHHTGGGCSEEECS
T ss_pred CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCC--CC-CccCCch-HHHHHHHHcCCCCCCEEEEC
Confidence 345999999887666666777999999999998522 12 5678888 5555666654 689999985
No 71
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=91.92 E-value=0.63 Score=35.08 Aligned_cols=63 Identities=21% Similarity=0.098 Sum_probs=42.7
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG 142 (145)
.+||++...++...-..+++|+.++++++|.. +.+....+..+--. .++.+. +.++||+|..+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~ 65 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYN---LVVLDSQNNPAKELANVQDLT-VRGTKILLINP 65 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHT-TTTEEEEEECC
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcE---EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeC
Confidence 47999999887777778999999999999973 44443333322221 223333 56899999754
No 72
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=91.78 E-value=0.61 Score=34.99 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=43.5
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch---HHHHHHHHh-hcCC--CcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGVVAQQLG-KSGK--YTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE---LPlaak~La-~s~~--yDAVIaL 141 (145)
...||+++...-+ .....-.+|..+.|+++|+..+...++..+...+ .--+++.++ +..+ +|||+|.
T Consensus 136 G~~~i~~i~~~~~-~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~ 208 (298)
T 3tb6_A 136 GHTHMMGIFKADD-TQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCY 208 (298)
T ss_dssp TCCSEEEEEESSS-HHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECS
T ss_pred CCCcEEEEcCCCC-ccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEe
Confidence 3458999987766 4444557999999999998755444454443322 123344444 4455 9999985
No 73
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=91.58 E-value=0.82 Score=34.38 Aligned_cols=67 Identities=19% Similarity=0.115 Sum_probs=44.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhc-CCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s-~~yDAVIaL 141 (145)
..||+++....+....+.-.+|..+.|+++|...+...++..+...|-- -+++.++++ .++|||+|.
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 199 (292)
T 3k4h_A 131 HKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMAT 199 (292)
T ss_dssp CCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred CceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEc
Confidence 3499999988776666666899999999999864433344333333322 234445544 589999985
No 74
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=91.52 E-value=0.59 Score=34.86 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=44.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s-~~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++|+..+.. +..+|.+...- +++.+++. .++|||+|..
T Consensus 120 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 189 (275)
T 3d8u_A 120 FKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHF--LTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSH 189 (275)
T ss_dssp CCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCE--EECSSCCCHHHHHHHHHHHHTTCTTCCEEEESS
T ss_pred CCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCcc--EEEeCCCChhHHHHHHHHHHhCCCCCCEEEEcC
Confidence 4599999987655555566799999999999864332 22356554432 23445544 5799999863
No 75
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=91.34 E-value=0.66 Score=36.11 Aligned_cols=66 Identities=6% Similarity=0.023 Sum_probs=41.8
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
++..+||++... ....-..+++|+.+.++++ |+. +.+....+..+-- -.++.+. +.++||||..+.
T Consensus 4 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~---l~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 71 (325)
T 2x7x_A 4 TPHFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVS---VEIRSAGDDNSKQAEDVHYFM-DEGVDLLIISAN 71 (325)
T ss_dssp --CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcE---EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 345689999877 5555567889999999888 763 4444444333222 2334444 467999998653
No 76
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=91.25 E-value=0.39 Score=36.70 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=46.1
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe---cccchH---HHHHHHHhhc-CCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV---PGSFEI---GVVAQQLGKS-GKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V---PGAfEL---Plaak~La~s-~~yDAVIaL 141 (145)
...||+++....+....+.-.+|..+.|+++|+..+...++.. +-..|- .-+++++++. .++|||+|.
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 204 (301)
T 3miz_A 130 GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSG 204 (301)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEES
T ss_pred CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEEC
Confidence 3459999998877666667789999999999987544444433 222221 1345555544 589999985
No 77
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=91.16 E-value=0.48 Score=35.52 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=46.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||+++...-+....+.-.+|..+.|+++|+. +.. ..++.+...-+.+.|.+..++|||+|..
T Consensus 121 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 185 (277)
T 3e61_A 121 KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRID---YKM-LEATLLDNDKKFIDLIKELSIDSIICSN 185 (277)
T ss_dssp TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---C---EEE-EEGGGGGSHHHHHHHHHHHTCCEEEESS
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCC---ccc-eecCCCCHHHHHHHhhcCCCCCEEEECC
Confidence 3458999998876666677789999999999985 333 5677777666666666667899999863
No 78
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=91.04 E-value=1.5 Score=33.61 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=51.1
Q ss_pred hhhhhhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 61 EAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 61 ~a~~~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+++++...++ ...|||++...-+. -....++|..+.|+++|+. +...++...-|..-++++|. .++|||+|
T Consensus 121 ~~~~~l~~~~p--g~~~I~~i~~~~~~-~~~~r~~g~~~al~~~gi~---~~~~~~~~~~~~~~~~~~l~--~~~dai~~ 192 (295)
T 3lft_A 121 QQVELIKALTP--NVKTIGALYSSSED-NSKTQVEEFKAYAEKAGLT---VETFAVPSTNEIASTVTVMT--SKVDAIWV 192 (295)
T ss_dssp HHHHHHHHHCT--TCCEEEEEEETTCH-HHHHHHHHHHHHHHHTTCE---EEEEEESSGGGHHHHHHHHT--TTCSEEEE
T ss_pred HHHHHHHHhCC--CCcEEEEEeCCCCc-chHHHHHHHHHHHHHcCCE---EEEEecCCHHHHHHHHHHHH--hcCCEEEE
Confidence 34455544332 23599999987543 3556779999999999985 44556666667777888876 47999998
Q ss_pred e
Q 032216 141 I 141 (145)
Q Consensus 141 L 141 (145)
.
T Consensus 193 ~ 193 (295)
T 3lft_A 193 P 193 (295)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=90.79 E-value=0.86 Score=34.53 Aligned_cols=63 Identities=22% Similarity=0.101 Sum_probs=42.2
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG 142 (145)
.+||++........-..+++|+.++++++|+. +.+....+..+-- -.++.+. +.++||||..+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~ 65 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYK---IIVEDSQNDSSKELSNVEDLI-QQKVDVLLINP 65 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcE---EEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeC
Confidence 37899998887777778999999999999973 4333322222221 1234444 56899999765
No 80
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=90.68 E-value=0.2 Score=38.22 Aligned_cols=65 Identities=5% Similarity=-0.023 Sum_probs=41.9
Q ss_pred CCEEEEEEee-e---cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchH-HHHHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVAR-F---NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvAr-f---N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfEL-Plaak~La~s~~yDAVIaLG~ 143 (145)
..+||+|... + ....-..+++|+.+.++++|.. +.+....+.-+- --.++.+ .+.++||||..+.
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYF---VLPFPFSEDRSQIDIYRDLI-RSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCE---EEECCCCSSTTCCHHHHHHH-HTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCE---EEEEeCCCchHHHHHHHHHH-HcCCCCEEEEeec
Confidence 4589999887 6 5555667999999999999973 333322222211 1223444 3578999998753
No 81
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=90.57 E-value=0.46 Score=35.86 Aligned_cols=68 Identities=21% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhc-CCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKS-GKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s-~~yDAVIaL 141 (145)
...||+++...-+....+.-.+|..+.|+++|+..+...++..+-..|--+ +++++++. .++|||+|.
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 195 (289)
T 3g85_A 126 RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCN 195 (289)
T ss_dssp TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEES
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEc
Confidence 346899999887766666677999999999998644333443333333322 34555544 579999985
No 82
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=90.49 E-value=0.22 Score=37.62 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=41.9
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..+..+||+|...+.......+++|+.+.++++|.. +.++...+..|.- .+ -++||||..+
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~------~~-~~vdgiI~~~ 65 (277)
T 3cs3_A 5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYE---MIVCSGKKSHLFI------PE-KMVDGAIILD 65 (277)
T ss_dssp CCCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCE---EEEEESTTTTTCC------CT-TTCSEEEEEC
T ss_pred ccCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCe---EEEEeCCCCHHHH------hh-ccccEEEEec
Confidence 355678999999887777778999999999999973 4444443322210 00 1788888765
No 83
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=90.16 E-value=1.2 Score=35.19 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=43.4
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeccc-chH-HHHHHHHhhcCCCcEEEEee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-FEI-GVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGA-fEL-Plaak~La~s~~yDAVIaLG 142 (145)
.....||++........-..+++|+.++++++|+. +.+...... .|- --.++.+. ..++||||..+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~l~~l~-~~~vdGiIi~~ 126 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGAS---VVVSMVERSGVEACKTAVHNLL-AQRVSGLIINY 126 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECCSSSHHHHHHHHHHHH-TTTCSCEEEES
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCE---EEEEeCCCCcHHHHHHHHHHHH-HCCCCEEEEec
Confidence 34568999998876556677999999999999974 555444332 222 22344444 56899999874
No 84
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=90.10 E-value=1.3 Score=33.68 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=42.7
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaLG 142 (145)
.+||+|........-..+++|+.++++++|+. +.+...+...+.-. .++.+. +.++||||..+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~ 67 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVS---VDIFASPSEGDFQSQLQLFEDLS-NKNYKGIAFAP 67 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCC---EEEEECSSTTCHHHHHHHHHHHH-TSSEEEEEECC
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCE---EEEeCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeC
Confidence 47999998877777778999999999999974 54544223232222 223343 46799999765
No 85
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=90.05 E-value=1 Score=33.99 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=43.7
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccc----hHH---HHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF----EIG---VVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAf----ELP---laak~La~s~~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++|+..+...++..+|.| ... -+++.+++. ++|||+|..
T Consensus 122 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~~ 195 (288)
T 2qu7_A 122 CKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVATN 195 (288)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEECS
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEECC
Confidence 4699999987554455566799999999999753221122115666 332 234555555 899999864
No 86
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=90.03 E-value=1.3 Score=35.11 Aligned_cols=63 Identities=6% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEec---ccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP---GSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP---GAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||++|... ........++..+.|+++|+.. ....++| |..+.--+++++.+. +.|+|+|.+
T Consensus 140 ~~~ia~i~~~--~~~~~~~~~~~~~~l~~~G~~v--~~~~~~~~~~~~~d~~~~~~~l~~~-~pdaI~~~~ 205 (385)
T 1pea_A 140 GERVVFIGSD--YIYPRESNHVMRHLYRQHGGTV--LEEIYIPLYPSDDDLQRAVERIYQA-RADVVFSTV 205 (385)
T ss_dssp CSEEEEEEES--SHHHHHHHHHHHHHHHHTTCEE--EEEEEECSSCCHHHHHHHHHHHHHH-TCSEEEEEC
T ss_pred CcEEEEEeCC--ChHHHHHHHHHHHHHHHcCCEE--EEEEeecCCCCcchHHHHHHHHHHC-CCCEEEEec
Confidence 4699999874 4556778899999999999741 1223444 766665666776543 789999864
No 87
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=89.78 E-value=0.25 Score=36.98 Aligned_cols=63 Identities=5% Similarity=-0.011 Sum_probs=38.4
Q ss_pred EEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchH-HHHHHHHhhcCCCcEEEEeee
Q 032216 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 77 RIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfEL-Plaak~La~s~~yDAVIaLG~ 143 (145)
.||++...+....-..+++|+.+.++++|.. +.+....+..+- --.++.+. +.++||||..+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 64 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYD---LALFPILSLARLKRYLENTTL-AYLTDGLILASY 64 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCE---EEECCCCSCCCCC----------CCCSEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCE---EEEEeCCCchhhHHHHHHHHH-hCCCCEEEEecC
Confidence 3789998887777778999999999999973 333322222111 11234443 468999998763
No 88
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=89.58 E-value=1.4 Score=33.13 Aligned_cols=68 Identities=1% Similarity=-0.138 Sum_probs=42.2
Q ss_pred CCEEEEEEee----ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch-HHHHHHHHhh-cCCCcEEEEee
Q 032216 75 GLRFALVVAR----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGK-SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvAr----fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE-LPlaak~La~-s~~yDAVIaLG 142 (145)
..||+++... -.....+.-.+|..+.|+++|...+...+..-....| ---+++.+++ ..++|||+|..
T Consensus 135 ~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 208 (304)
T 3gbv_A 135 DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFN 208 (304)
T ss_dssp CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESS
T ss_pred CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 3699999844 2334555667999999999998643232322222222 2234455554 45899999863
No 89
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=89.54 E-value=1.2 Score=34.13 Aligned_cols=68 Identities=22% Similarity=0.102 Sum_probs=45.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHH-----hh-cCCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQL-----GK-SGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~L-----a~-s~~yDAVIaL 141 (145)
...||+++....+....+.-.+|..+.|+++|+..+...+.......|--+ +++.+ ++ ..++|||+|.
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~ 204 (303)
T 3kke_A 130 GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVA 204 (303)
T ss_dssp TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEES
T ss_pred CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEEC
Confidence 345999999887766666777999999999998644333333333333222 34555 54 4579999985
No 90
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=89.37 E-value=0.78 Score=34.70 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=42.9
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaLG 142 (145)
+..+||++........-..+++|+.+.++++|+. +.+ ..+...+.-- .++.+. ..++||||..+
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~---~~~-~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~ 69 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLN---ASQ-VGPSSTDAPQQVKIIEDLI-ARKVDAITIVP 69 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEE---EEE-ECCSSSCHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcCCE---EEE-ECCCCCCHHHHHHHHHHHH-HcCCCEEEEec
Confidence 3568999998777777778999999999999863 222 2344333222 234444 46899999765
No 91
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=89.26 E-value=2.2 Score=32.97 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=51.0
Q ss_pred hhhhhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 62 AVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 62 a~~~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
+++++...++ ...|||++...-+. -....++|..+.|+++|+. +...++...-|.--++++|. .+.|||+|.
T Consensus 129 ~~~~l~~~~P--g~~~I~~i~~~~~~-~~~~r~~g~~~al~~~gi~---~~~~~~~~~~~~~~~~~~l~--~~~dai~~~ 200 (302)
T 2qh8_A 129 HVELIKEILP--NVKSIGVVYNPGEA-NAVSLMELLKLSAAKHGIK---LVEATALKSADVQSATQAIA--EKSDVIYAL 200 (302)
T ss_dssp HHHHHHHHST--TCCEEEEEECTTCH-HHHHHHHHHHHHHHHTTCE---EEEEECSSGGGHHHHHHHHG--GGCSEEEEC
T ss_pred HHHHHHHhCC--CCcEEEEEecCCCc-chHHHHHHHHHHHHHcCCE---EEEEecCChHHHHHHHHHHh--ccCCEEEEC
Confidence 4455544333 34599999876432 2556779999999999985 55566766667777888886 379999885
No 92
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=89.15 E-value=1.7 Score=33.22 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhc----CCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKS----GKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s----~~yDAVIaLG 142 (145)
...||+++...-+....+.-.+|..+.|+++|+. +.++...-..|--+ +++.+++. .++|||+|..
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~ 200 (295)
T 3hcw_A 130 GVDELIFITEKGNFEVSKDRIQGFETVASQFNLD---YQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLD 200 (295)
T ss_dssp CCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCE---EEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESS
T ss_pred CCccEEEEcCCccchhHHHHHHHHHHHHHHcCCC---eeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECC
Confidence 3459999998776666666789999999999985 33333332333222 34555543 2799999853
No 93
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=88.96 E-value=1.4 Score=34.41 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=44.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaL 141 (145)
...||+++....+.... .-.+|..+.|+++|....+...+ .++.+..-. +++.+++ ..++|||+|.
T Consensus 177 G~~~I~~i~~~~~~~~~-~R~~Gf~~al~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 246 (339)
T 3h5o_A 177 GKRRIGFLGAQLDERVM-KRLDGYRAALDAADCRDAGLEWL-DPQPSSMQMGADMLDRALAERPDCDALFCC 246 (339)
T ss_dssp TCCSEEEEEESCCHHHH-HHHHHHHHHHHHTTCCCGGGEEE-ECSCCCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred CCCeEEEEeCCCCccHH-HHHHHHHHHHHHCCCCCCChheE-ecCCCCHHHHHHHHHHHHcCCCCCcEEEEC
Confidence 34689999988765544 45699999999999843334433 466664432 3444544 4589999985
No 94
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=88.64 E-value=1.7 Score=32.94 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=43.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhh-c-C-CCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-S-G-KYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~-s-~-~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++|+..+...++ +|.|... -+++.+++ . . ++|||+|..
T Consensus 125 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~ 196 (287)
T 3bbl_A 125 HRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYIL--RGEGTFEVGRAMTLHLLDLSPERRPTAIMTLN 196 (287)
T ss_dssp CCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEE--ECCSSHHHHHHHHHHHHTSCTTTSCSEEEESS
T ss_pred CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEE--eCCCCHHHHHHHHHHHHhhCCCCCCcEEEECC
Confidence 4599999877554455566799999999999763322233 4544433 23455655 4 4 799999853
No 95
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=88.56 E-value=1.7 Score=32.97 Aligned_cols=65 Identities=14% Similarity=0.313 Sum_probs=42.3
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaL 141 (145)
..||+++...-.......-.+|..+.|+++|+..+...++ +|.|...- +++.+++ ..++|||+|.
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 196 (290)
T 2rgy_A 128 HRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLI--ESDFSPEGGYAATCQLLESKAPFTGLFCA 196 (290)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE--ECCSSHHHHHHHHHHHHHHTCCCSEEEES
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEE--ecCCChhHHHHHHHHHHhCCCCCcEEEEC
Confidence 4599999887544444556799999999999763322233 45554332 2344554 4589999985
No 96
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=88.25 E-value=0.94 Score=33.92 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s-~~yDAVIaLG 142 (145)
..||+++...-+....+.-.+|..+.|+++|+..+...+ .+|.+... -+++.+++. .++|||+|..
T Consensus 139 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 208 (296)
T 3brq_A 139 HQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLI--ANGKWTPASGAEGVEMLLERGAKFSALVASN 208 (296)
T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGE--ECCCSSHHHHHHHHHHHHTC--CCSEEEESS
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhE--EeCCCChhHHHHHHHHHHhCCCCCCEEEECC
Confidence 458999987654444556679999999999976332222 35555433 234455543 5799999864
No 97
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=88.12 E-value=1.3 Score=34.55 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHh-hcCCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLG-KSGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La-~s~~yDAVIaL 141 (145)
...||+++....+....+.-.+|..+.|+++|+..+...+ ++|.|...- +++.++ +..++|||+|.
T Consensus 180 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 249 (338)
T 3dbi_A 180 GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLI--ANGKWTPASGAEGVEMLLERGAKFSALVAS 249 (338)
T ss_dssp TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGE--ECCCSSHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceE--EeCCCCHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 3468999988766666666789999999999986443323 345554432 344455 44689999985
No 98
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=87.84 E-value=1.3 Score=34.42 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCEEEEEEeee-cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhc-CCCcEEEEe
Q 032216 75 GLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArf-N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s-~~yDAVIaL 141 (145)
..||+++...- +....+.-.+|..+.|+++|+..+...++ +|.|... -+++.+++. .++|||+|.
T Consensus 177 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 246 (332)
T 2hsg_A 177 HKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIV--EGDYTYDSGIEAVEKLLEEDEKPTAIFVG 246 (332)
T ss_dssp CSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEE--ECCSSHHHHHHHHHHHHHSSSCCSEEEES
T ss_pred CCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEE--eCCCCHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 46999999875 54555566799999999999863322233 4545433 234555554 479999985
No 99
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=87.54 E-value=1.4 Score=33.82 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=42.7
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEeee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaLG~ 143 (145)
.+||+|...+.. .-..+++|+.+.++++|+. +.+. .+...+..- .++.+. ..++||||..+.
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~---~~~~-~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVD---TKFF-VPQKEDINAQLQMLESFI-AEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCE---EEEE-CCSSSCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCE---EEEE-CCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 479999988877 7788999999999999973 3333 243333322 334444 468999998653
No 100
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=87.45 E-value=0.77 Score=34.88 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhc-CCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s-~~yDAVIaLG 142 (145)
...||+++...-+....+.-.+|..+.|+++|+..+...+ +++.++.- -+++.+++. .++|||+|..
T Consensus 126 G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 196 (288)
T 3gv0_A 126 GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDA--VTIETPLEKIRDFGQRLMQSSDRPDGIVSIS 196 (288)
T ss_dssp TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCS--CCTTSCHHHHHHHHHHHTTSSSCCSEEEESC
T ss_pred CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhhe--eccccchHHHHHHHHHHHhCCCCCcEEEEcC
Confidence 3459999988766555566679999999999985332222 34444432 234555544 5799999853
No 101
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=87.39 E-value=2.1 Score=33.58 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=43.6
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEec-ccchHHH---HHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGV---VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP-GAfELPl---aak~La~s~~yDAVIaLG 142 (145)
...||+++...-+....+.=.+|..+.|+++|+. ..++ |.|...- +++.+++..++|||+|..
T Consensus 173 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~n 239 (333)
T 3jvd_A 173 SGMNIAALVGEESLSTTQERMRGISHAASIYGAE------VTFHFGHYSVESGEEMAQVVFNNGLPDALIVAS 239 (333)
T ss_dssp SSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE------EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC------EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECC
Confidence 4569999998866555666679999999999974 2233 5554432 345555554499999863
No 102
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=87.31 E-value=2.3 Score=32.04 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=42.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhc-C--CCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-G--KYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s-~--~yDAVIaL 141 (145)
..||+++...-.......-.+|..+.|+++|...+.. ..+.|.++.. -+++.++++ . ++|||+|.
T Consensus 140 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~ 210 (309)
T 2fvy_A 140 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL--QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 210 (309)
T ss_dssp SEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEE--EEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEES
T ss_pred ceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEE--EEecCCCCHHHHHHHHHHHHHhCCCCCccEEEEC
Confidence 3589999876554455666799999999999752212 1234555443 234556655 3 79999985
No 103
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=87.09 E-value=1.4 Score=33.76 Aligned_cols=64 Identities=11% Similarity=-0.058 Sum_probs=41.9
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchH-HHHHHHH-hh-cCCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQL-GK-SGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfEL-Plaak~L-a~-s~~yDAVIaL 141 (145)
...||+++....+....+.-.+|..+.|+++|+..+. .+.|.|.- --+++++ ++ ..++|||+|.
T Consensus 143 G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 209 (305)
T 3huu_A 143 GHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC----VVIKSMNDLRDFIKQYCIDASHMPSVIITS 209 (305)
T ss_dssp TCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE----EEECSHHHHHHHC--------CCCSEEEES
T ss_pred CCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc----EEecCcHHHHHHHHHhhhcCCCCCCEEEEC
Confidence 3458999998877666666789999999999986432 24565553 1123344 44 4689999985
No 104
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=87.06 E-value=2 Score=32.72 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=43.6
Q ss_pred CCEEEEEEeee-cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhc-CCCcEEEEe
Q 032216 75 GLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArf-N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s-~~yDAVIaL 141 (145)
..||+++...- +......-.+|.++.|+++|+..+...++ +|.|... -+++.+++. .++|||+|.
T Consensus 133 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 202 (289)
T 2fep_A 133 HTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVA--EGDYTYDSGLEALQHLMSLDKKPTAILSA 202 (289)
T ss_dssp CSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEE--ECCSCHHHHHHHHHHHTTSSSCCSEEEES
T ss_pred CCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEe--eCCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 46999999876 55555666799999999999864322233 4555433 234555554 579999986
No 105
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=87.03 E-value=1.5 Score=34.16 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=43.2
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s~~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++|+..+...+ .+|.|... -+++.+++. ++|||+|..
T Consensus 180 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ll~~-~~~ai~~~~ 247 (332)
T 2o20_A 180 NKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLV--FEGNYSYEQGKALAERLLER-GATSAVVSH 247 (332)
T ss_dssp CSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGE--ECSCCSHHHHHHHHHHHHHT-TCCEEEESC
T ss_pred CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhE--EeCCCCHHHHHHHHHHHhcc-CCCEEEECC
Confidence 458999987754444455579999999999986332222 35555433 234556666 899999853
No 106
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=86.83 E-value=2.1 Score=32.48 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=43.0
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhc-CCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s-~~yDAVIaLG 142 (145)
...||+++...-+....+.-.+|..+.|+++|.. ...+ .+|.|+..- +++.+++. .++|||+|..
T Consensus 137 G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 205 (293)
T 2iks_A 137 PAETVLYLGALPELSVSFLREQGFRTAWKDDPRE---VHFL-YANSYEREAAAQLFEKWLETHPMPQALFTTS 205 (293)
T ss_dssp CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCC---EEEE-EESSSCHHHHHHHHHHHTTTSCCCSEEEESS
T ss_pred CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCC---ccEE-EcCCCChhhHHHHHHHHHhcCCCCCEEEECC
Confidence 3469999988755444556679999999999972 3322 356555432 34455544 4799999863
No 107
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=86.57 E-value=2.3 Score=33.06 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=43.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHH---HHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVV---AQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPla---ak~La~s~~yDAVIaLG 142 (145)
..+||++........-..+.+|+.+.++++|+ ++... |...+..-. ++.|. +.++|+||..+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~-----~~~~~~~~~~d~~~q~~~i~~li-~~~vdgiii~~ 68 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGI-----DVTYDGPTEPSVSGQVQLVNNFV-NQGYDAIIVSA 68 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTC-----EEEECCCSSCCHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCC-----EEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEeC
Confidence 45899999887766777899999999999996 33333 554544433 34444 46899998754
No 108
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=86.55 E-value=1.6 Score=32.47 Aligned_cols=68 Identities=16% Similarity=0.035 Sum_probs=40.9
Q ss_pred CCEEEEEEeee-c---HHHHH-HHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARF-N---ELVTK-LLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArf-N---~~It~-~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s-~~yDAVIaLG 142 (145)
..||+++...- . ..... .-.+|..+.|+++|+..+...++..+-..|--. +++.++++ .++|||+|..
T Consensus 114 ~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 188 (276)
T 2h0a_A 114 GPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVFAGA 188 (276)
T ss_dssp SCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEECSS
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEEECC
Confidence 45999998765 3 33344 456999999999998633222333222233222 34555544 4799999853
No 109
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=86.33 E-value=2.1 Score=32.75 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=44.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||+++... ......+.++..+.|+++|+.. ...... +|..+.--+++++.+ .+.|+|++.+
T Consensus 138 ~~~i~~i~~~--~~~~~~~~~~~~~~l~~~g~~v--~~~~~~~~~~~d~~~~~~~l~~-~~~d~i~~~~ 201 (346)
T 1usg_A 138 PQRIAIIHDK--QQYGEGLARSVQDGLKAANANV--VFFDGITAGEKDFSALIARLKK-ENIDFVYYGG 201 (346)
T ss_dssp CSSEEEEECS--SHHHHHHHHHHHHHHHHTTCCE--EEEEECCTTCCCCHHHHHHHHH-TTCCEEEEES
T ss_pred CCeEEEEECC--CchHHHHHHHHHHHHHHcCCEE--EEEeccCCCCcCHHHHHHHHHh-cCCCEEEEcC
Confidence 4699999874 4566778899999999999851 122233 576666566677764 4789999875
No 110
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=86.18 E-value=1.3 Score=32.76 Aligned_cols=65 Identities=22% Similarity=0.170 Sum_probs=43.3
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhh-cC-CCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-SG-KYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~-s~-~yDAVIaLG 142 (145)
...||+++...-+....+.-.+|+.+.|+++|+. +.. ...+.+... -+++++++ .. ++|||+|..
T Consensus 119 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~ 188 (272)
T 3o74_A 119 APRSIALIGARPELSVSQARAGGFDEALQGYTGE---VRR-YQGEAFSRECGQRLMQQLIDDLGGLPDALVTTS 188 (272)
T ss_dssp CCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSE---EEE-EEESSSSHHHHHHHHHHHHHHHTSCCSEEEESS
T ss_pred CCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCC---hhe-eecCCCCHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence 3469999998776666667779999999999974 222 234444333 23344444 45 699999853
No 111
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=86.11 E-value=3.9 Score=31.84 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=46.4
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||++|.. +......+.++..+.|+++|+... .....-+|..+.--.++++.+ .+.|+|++.+
T Consensus 141 ~~~iaii~~--~~~~g~~~~~~~~~~~~~~G~~v~-~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~ 204 (364)
T 3lop_A 141 VTRIGVLYQ--EDALGKEAITGVERTLKAHALAIT-AMASYPRNTANVGPAVDKLLA-ADVQAIFLGA 204 (364)
T ss_dssp CCCEEEEEE--TTHHHHHHHHHHHHHHHTTTCCCS-EEEEECTTSCCCHHHHHHHHH-SCCSEEEEES
T ss_pred CceEEEEEe--CchhhHHHHHHHHHHHHHcCCcEE-EEEEecCCCccHHHHHHHHHh-CCCCEEEEec
Confidence 469999986 445677889999999999998622 233345677776666777654 5789999865
No 112
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=86.08 E-value=4.8 Score=30.53 Aligned_cols=62 Identities=5% Similarity=0.011 Sum_probs=41.4
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHH-HhhcCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQ-LGKSGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~-La~s~~yDAVIaL 141 (145)
..||+++...-.......-.+|+++.|+++|+. + ..+.+.+.-. -+++. |.+..++|||+|.
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~---~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 195 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIF---F--EELDVGTDPNQVQSRVKSYFKIHPETNIIFCL 195 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE---E--EEEECCSCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCe---E--EEeecCCChHHHHHHHHHHHHhCCCCCEEEEc
Confidence 569999988766666666789999999999874 2 2233333322 22334 3345679999985
No 113
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=85.95 E-value=3.5 Score=31.14 Aligned_cols=65 Identities=18% Similarity=0.078 Sum_probs=42.0
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHH--Hhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQ--LGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~--La~s-~~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++|+..+ ++..+...|-- -+++. +++. .++|||+|..
T Consensus 124 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 192 (285)
T 3c3k_A 124 KKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYAENLDYMAGKLATFSLLKSAVKPDAIFAIS 192 (285)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEECSSSSHHHHHHHHHHHHSSSSCCSEEEESS
T ss_pred CCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecCCChHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 46899998865444455567999999999998633 33323233322 23455 5554 4799999863
No 114
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=85.95 E-value=1.2 Score=33.57 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=42.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHh-hcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLG-KSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La-~s~~yDAVIaLG 142 (145)
...||+++...-+......-.+|..+.|+++|+..+...+ +.|.++.- -+++.++ +..++|||+|..
T Consensus 124 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 194 (291)
T 3egc_A 124 GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWI--AAGGVRADNGRDGAIKVLTGADRPTALLTSS 194 (291)
T ss_dssp TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGE--EC------CCHHHHHHHHTC-CCCSEEEESS
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHe--EeCCCChhHHHHHHHHHHhCCCCCcEEEECC
Confidence 3458999998876666777789999999999986432222 23433322 2345555 456899999863
No 115
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=85.87 E-value=3.2 Score=32.02 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=46.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||++|.. +......+.++..+.|+++|+... .....-+|..+.--.++++.+ .+.|+|++.+
T Consensus 138 ~~~iaii~~--~~~~~~~~~~~~~~~l~~~g~~v~-~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~ 201 (356)
T 3ipc_A 138 DAKVAIIHD--KTPYGQGLADETKKAANAAGVTEV-MYEGVNVGDKDFSALISKMKE-AGVSIIYWGG 201 (356)
T ss_dssp TCCEEEEEC--SSHHHHHHHHHHHHHHHHTTCCCS-EEEECCTTCCCCHHHHHHHHH-TTCCEEEEES
T ss_pred CCEEEEEeC--CChHHHHHHHHHHHHHHHcCCEEE-EEEeeCCCCCCHHHHHHHHHh-cCCCEEEEcc
Confidence 459999987 556677899999999999998632 222334677777777777654 5789998654
No 116
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=85.51 E-value=3.8 Score=31.69 Aligned_cols=65 Identities=6% Similarity=-0.040 Sum_probs=42.4
Q ss_pred CCCCEEEEEEee-ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc----cchH-HHHHHHHhhcCCCcEEEEe
Q 032216 73 NEGLRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVWVPG----SFEI-GVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 73 ~~~lRIaIVvAr-fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG----AfEL-Plaak~La~s~~yDAVIaL 141 (145)
.+..+||++... .....-..+++|+.+.++++|.. +.+..... ..+- --.++.+. +.++||||..
T Consensus 41 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~ 111 (342)
T 1jx6_A 41 QRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNIN---YQLNQVFTRPNADIKQQSLSLMEAL-KSKSDYLIFT 111 (342)
T ss_dssp SSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEECCTTCCHHHHHHHHHHHH-HTTCSEEEEC
T ss_pred CCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCe---EEEEecCCCCccCHHHHHHHHHHHH-hcCCCEEEEe
Confidence 445689999987 55555567899999999999974 55543222 2221 12344444 3579999973
No 117
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=85.47 E-value=2.8 Score=31.48 Aligned_cols=63 Identities=10% Similarity=0.188 Sum_probs=42.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhc--CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS--GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s--~~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++|+. +++ +.|.|+.. -+++.++++ .++|||+|..
T Consensus 118 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~ 185 (277)
T 3cs3_A 118 SKKVLLLSGPEKGYDSQERLAVSTRELTRFGIP---YEI--IQGDFTEPSGYAAAKKILSQPQTEPVDVFAFN 185 (277)
T ss_dssp CSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCC---EEE--EECCSSHHHHHHHHHHHTTSCCCSSEEEEESS
T ss_pred CceEEEEeCCccCccHHHHHHHHHHHHHHcCCC---eeE--EeCCCChhHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 468999987755445556679999999999975 332 34555433 234555554 5799999863
No 118
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=85.44 E-value=1.5 Score=34.26 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=43.2
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s-~~yDAVIaLG 142 (145)
..||+++...-+....+.-.+|..+.|+++|+..+...+ .+|.|+..- +++.+++. .++|||+|..
T Consensus 177 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 246 (340)
T 1qpz_A 177 HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWI--VQGDFEPESGYRAMQQILSQPHRPTAVFCGG 246 (340)
T ss_dssp CCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGB--CCCCSSHHHHHHHHHHHHTSSSCCSEEEESS
T ss_pred CCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhhe--EeCCCCHHHHHHHHHHHHcCCCCCcEEEECC
Confidence 458999987655444455679999999999986332212 355554432 34555554 5799999863
No 119
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=85.39 E-value=2.5 Score=32.31 Aligned_cols=65 Identities=9% Similarity=-0.034 Sum_probs=45.5
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||++|.. +......+.++..+.|+++|+... .....-+|..+.--.++++.+ .+.|+|++.+
T Consensus 134 g~~~ia~i~~--~~~~~~~~~~~~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~l~~-~~~dav~~~~ 198 (362)
T 3snr_A 134 NVKTVGYIGY--SDSYGDLWFNDLKKQGEAMGLKIV-GEERFARPDTSVAGQALKLVA-ANPDAILVGA 198 (362)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCEEE-EEEEECTTCSCCHHHHHHHHH-HCCSEEEEEC
T ss_pred CCCEEEEEec--CchHHHHHHHHHHHHHHHcCCEEE-EEeecCCCCCCHHHHHHHHHh-cCCCEEEEec
Confidence 3469999954 556678899999999999998411 122334566666666666654 4789999875
No 120
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=84.43 E-value=1.1 Score=33.69 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=39.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~s-~~yDAVIaLG 142 (145)
..||+++...-+....+.-.+|..+.|+++|+..+... .++|.|+.. -+++.+++. .++|||+|..
T Consensus 126 ~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 195 (289)
T 1dbq_A 126 HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW--IVQGDFEPESGYRAMQQILSQPHRPTAVFCGG 195 (289)
T ss_dssp CCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGG--BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESC
T ss_pred CCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHH--eEeCCCCHHHHHHHHHHHHhCCCCCCEEEECC
Confidence 45999998765444455567999999999997533221 235555432 234455544 5899999864
No 121
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=84.27 E-value=1.4 Score=34.50 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=37.5
Q ss_pred CCCCEEEEEEee-ecH-HHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecc-cchHHHHHHHHhhcCCCcEEEEee
Q 032216 73 NEGLRFALVVAR-FNE-LVTKLLLEGALETFKKYSVKEENIDVVW-VPG-SFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 73 ~~~lRIaIVvAr-fN~-~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPG-AfELPlaak~La~s~~yDAVIaLG 142 (145)
++..+||+|+.. .++ .....+.+|..+.++++|+. +.++. .+. .-|. -.++.|+ +.++|+||+.|
T Consensus 3 ~~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~-~~l~~l~-~~~vdgIi~~~ 71 (296)
T 2hqb_A 3 GGGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVD---VVLEEGVNSEQKAH-RRIKELV-DGGVNLIFGHG 71 (296)
T ss_dssp ---CEEEEECCCC----CCTHHHHHHHHHHHHHSCCE---EEEECCCCSHHHHH-HHHHHHH-HTTCCEEEECS
T ss_pred CCCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCe---EEEEeCCCCHHHHH-HHHHHHH-HCCCCEEEEcC
Confidence 345689998852 333 44556888888999999973 33321 121 2222 2455555 45799999876
No 122
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=84.08 E-value=2.9 Score=31.17 Aligned_cols=63 Identities=11% Similarity=-0.083 Sum_probs=44.4
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHH---HHHHh-hcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLG-KSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPla---ak~La-~s~~yDAVIaLG 142 (145)
..||+++...-.. ...-.+|..+.|+++|.... ..++++.++..-+ ++.++ +..++|||+|..
T Consensus 118 ~~~i~~i~~~~~~--~~~R~~gf~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 184 (280)
T 3gyb_A 118 HTHIAHLRVGSGA--GLRRFESFEATMRAHGLEPL---SNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN 184 (280)
T ss_dssp CCSEEEECCSSHH--HHHHHHHHHHHHHHTTCCCE---ECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred CCeEEEEeCCCch--HHHHHHHHHHHHHHcCcCCC---cccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC
Confidence 4589999987766 66677999999999998632 2236777665433 34444 446899999853
No 123
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=83.96 E-value=2.5 Score=33.08 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEe
Q 032216 75 GLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaL 141 (145)
..||+++....+ ....+.=.+|..+.|+++|+..+...+ .+|.+..-- +++.+++ ..++|||+|.
T Consensus 185 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 254 (344)
T 3kjx_A 185 YRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREF--YSGGSALAKGREMTQAMLERSPDLDFLYYS 254 (344)
T ss_dssp CCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEE--CSSCCCHHHHHHHHHHHHHHSTTCCEEEES
T ss_pred CCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheE--EeCCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 358999998761 234444569999999999987543333 445554432 3444544 4589999985
No 124
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=83.93 E-value=3 Score=32.19 Aligned_cols=65 Identities=9% Similarity=-0.052 Sum_probs=46.3
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||++|. -+......+.++..+.|+++|+... -....-+|..+.--.++++.+ .+.|+|++.+
T Consensus 138 g~~~ia~i~--~~~~~~~~~~~~~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~l~~-~~~d~i~~~~ 202 (358)
T 3hut_A 138 GFTSVAVIG--VTTDWGLSSAQAFRKAFELRGGAVV-VNEEVPPGNRRFDDVIDEIED-EAPQAIYLAM 202 (358)
T ss_dssp TCCEEEEEE--ESSHHHHHHHHHHHHHHHHTTCEEE-EEEEECTTCCCCHHHHHHHHH-HCCSEEEEES
T ss_pred CCCEEEEEe--cCcHHHHHHHHHHHHHHHHcCCEEE-EEEecCCCCccHHHHHHHHHh-cCCCEEEEcc
Confidence 346999997 3556678899999999999998521 122334577777667777754 4689999865
No 125
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=83.90 E-value=4.8 Score=31.92 Aligned_cols=68 Identities=4% Similarity=0.106 Sum_probs=47.8
Q ss_pred ccccCCCCCCE--EEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEe
Q 032216 67 TGFLTKNEGLR--FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCI 141 (145)
Q Consensus 67 ~g~l~~~~~lR--IaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaL 141 (145)
++-++.+..+| |+||.+.--+. .-.+.|.+.|++.|+. ..++|-+|--.|--+..+++ ..+++.|||.
T Consensus 12 s~~~p~~~~mkp~V~IimGS~SD~---~v~~~a~~~L~~~gI~----~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 12 SGLVPRGSHMKSLVGVIMGSTSDW---ETMKYACDILDELNIP----YEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp ----------CCSEEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred cccccCCCCCCccEEEEECCHhHH---HHHHHHHHHHHHcCCC----eeEEEEccccChHHHHHHHHHHHhcCceEEEEe
Confidence 34445555555 99999888877 5678999999999996 45789999999987777653 4578988875
No 126
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=83.71 E-value=3.3 Score=32.07 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=47.1
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||++|.. +....+.+.++..+.|+++|+.... .....+|..+.--.++++.+ .+.|+|++.+
T Consensus 158 g~~~ia~i~~--~~~~~~~~~~~~~~~l~~~g~~v~~-~~~~~~~~~d~~~~~~~~~~-~~~dav~~~~ 222 (386)
T 3sg0_A 158 GAKKVGYIGF--SDAYGEGYYKVLAAAAPKLGFELTT-HEVYARSDASVTGQVLKIIA-TKPDAVFIAS 222 (386)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHHTCEECC-CEEECTTCSCCHHHHHHHHH-TCCSEEEEEC
T ss_pred CCCEEEEEec--CchHHHHHHHHHHHHHHHcCCEEEE-EEeeCCCCCcHHHHHHHHHh-cCCCEEEEec
Confidence 3469999954 5667788999999999999975221 23345677777666777654 5789998865
No 127
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=83.69 E-value=3.6 Score=31.11 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=46.6
Q ss_pred hhhhhhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecccchHHH---HHHHHhh-cCCC
Q 032216 61 EAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGV---VAQQLGK-SGKY 135 (145)
Q Consensus 61 ~a~~~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPGAfELPl---aak~La~-s~~y 135 (145)
.|++++-..+ ....||+++...-+ .....-.+|..+.|+++|.. ++..+ ..|.+..-- +++.+++ ..++
T Consensus 115 ~~~~~l~~~~--~g~~~i~~i~~~~~-~~~~~R~~gf~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (305)
T 3g1w_A 115 NAAYKMAELL--DGEGEVAVITLPNQ-LNHQERTTGFKETLEAEFPA---IEVIAVEDGRGDSLHSRRVAHQLLEDYPNL 188 (305)
T ss_dssp HHHHHHHHHT--TTCEEEEEEECTTC-HHHHHHHHHHHHHHHHHCTT---EEEEEEEECTTCHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHh--CCCcEEEEEeCCCc-ccHHHHHHHHHHHHHhhCCC---CEEEEEecCCCCHHHHHHHHHHHHHhCCCc
Confidence 3445544433 13458999987644 45566679999999999875 33332 245554332 3344444 4589
Q ss_pred cEEEEe
Q 032216 136 TAVLCI 141 (145)
Q Consensus 136 DAVIaL 141 (145)
|||+|.
T Consensus 189 ~ai~~~ 194 (305)
T 3g1w_A 189 AGIFAT 194 (305)
T ss_dssp EEEEES
T ss_pred eEEEEC
Confidence 999985
No 128
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=83.68 E-value=4.6 Score=31.51 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=44.2
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHH---HHHHh-hcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLG-KSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPla---ak~La-~s~~yDAVIaLG 142 (145)
.||+++...-.....+.-.+|..+.|+++|.. + ....++|.+...-+ ++.++ +..++|||+|..
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~ 213 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQV-H--LRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSAN 213 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTTE-E--EEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCe-E--EEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECC
Confidence 69999998766666667789999999999862 2 22345666655433 33344 446799999864
No 129
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=83.61 E-value=3.6 Score=31.86 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=45.5
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||++|.. +........++..+.|+++|+... -....-+|..+.--.++++.+ .+.|+|++.+
T Consensus 150 g~~~ia~i~~--~~~~~~~~~~~~~~~l~~~G~~v~-~~~~~~~~~~d~~~~~~~l~~-~~~dai~~~~ 214 (375)
T 4evq_A 150 GLKKAVTVTW--KYAAGEEMVSGFKKSFTAGKGEVV-KDITIAFPDVEFQSALAEIAS-LKPDCVYAFF 214 (375)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCEEE-EEEEECTTCCCCHHHHHHHHH-HCCSEEEEEC
T ss_pred CCcEEEEEec--CchHHHHHHHHHHHHHHHcCCeEE-EEEecCCCCccHHHHHHHHHh-cCCCEEEEec
Confidence 3469999974 455677889999999999998411 122234576666666777654 3689999854
No 130
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=83.08 E-value=1.5 Score=33.20 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++|+..+...+ ++|.|...- +++.+++..++|||+|..
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~ 193 (290)
T 3clk_A 125 HRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWI--KPGDYSYTSGEQAMKAFGKNTDLTGIIAAS 193 (290)
T ss_dssp CCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGE--ECCCSSHHHHHHHHHHHCTTCCCSEEEESS
T ss_pred CCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceE--EcCCCChhhHHHHHHHHhccCCCcEEEECC
Confidence 458999987644444445679999999999976332212 356554442 334444445799999863
No 131
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=82.88 E-value=2.9 Score=34.04 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=39.0
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
++..+||+|.. .+...-..+++|+.+.++++|.. +.+......-+. ++.+ .+.++||||.
T Consensus 23 ~~s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~---~~i~~~~~~~~~---i~~l-~~~~vDGiIi 82 (412)
T 4fe7_A 23 TKRHRITLLFN-ANKAYDRQVVEGVGEYLQASQSE---WDIFIEEDFRAR---IDKI-KDWLGDGVIA 82 (412)
T ss_dssp CCCEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCC---EEEEECC-CC------------CCCSEEEE
T ss_pred CCCceEEEEeC-CcchhhHHHHHHHHHHHHhcCCC---eEEEecCCccch---hhhH-hcCCCCEEEE
Confidence 45568999996 66666667999999999999974 566654443332 3333 4568999986
No 132
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=82.77 E-value=2.3 Score=32.30 Aligned_cols=63 Identities=14% Similarity=-0.005 Sum_probs=44.2
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaL 141 (145)
..||+++....+. ..+.-.+|..+.|+++|...+. ..++|.++.-- +++++++ ..++|||+|.
T Consensus 126 ~~~I~~i~~~~~~-~~~~R~~Gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 192 (289)
T 3k9c_A 126 HRNIAHIDGADAP-GGADRRAGFLAAMDRHGLSASA---TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAF 192 (289)
T ss_dssp CCSEEEECCTTST-THHHHHHHHHHHHHHTTCGGGE---EEECCCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred CCcEEEEeCCCCc-cHHHHHHHHHHHHHHCCCCCCc---cEEECCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 4589999987766 4556679999999999986322 34566665543 3444554 4589999985
No 133
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=82.52 E-value=1.7 Score=34.32 Aligned_cols=67 Identities=6% Similarity=0.105 Sum_probs=43.0
Q ss_pred CCCEEEEEEeeecHHH-HHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---HHHHHHhh-cCCCcEEEEe
Q 032216 74 EGLRFALVVARFNELV-TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~I-t~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---laak~La~-s~~yDAVIaL 141 (145)
...||+++....+... .+.-.+|..+.|+++|+..+.. +....+.+..- -+++++++ ..++|||+|.
T Consensus 186 G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 257 (355)
T 3e3m_A 186 GFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQE-IRLGAPPLSIEDGVAAAELILQEYPDTDCIFCV 257 (355)
T ss_dssp TCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCE-EEESCSSCCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred CCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCcc-EEEecCCCCHHHHHHHHHHHHcCCCCCcEEEEC
Confidence 3459999998655432 4455799999999999875432 33334444322 23344444 4689999985
No 134
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=82.21 E-value=5.4 Score=30.81 Aligned_cols=63 Identities=13% Similarity=0.010 Sum_probs=44.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||++|.. +......+.++..+.|+++|+. -+....+ +|..+.--.++++.+ .+.|+|++.+
T Consensus 139 ~~~ia~i~~--~~~~g~~~~~~~~~~l~~~g~~--v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~ 202 (368)
T 4eyg_A 139 IKKVATLTS--DYAPGNDALAFFKERFTAGGGE--IVEEIKVPLANPDFAPFLQRMKD-AKPDAMFVFV 202 (368)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCE--EEEEEEECSSSCCCHHHHHHHHH-HCCSEEEEEC
T ss_pred CCEEEEEec--CchHhHHHHHHHHHHHHHcCCE--EEEEEeCCCCCCcHHHHHHHHHh-cCCCEEEEec
Confidence 469999984 5556777889999999999974 2223333 466666666777654 4689999854
No 135
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=81.80 E-value=6 Score=30.23 Aligned_cols=64 Identities=8% Similarity=0.063 Sum_probs=41.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaLG 142 (145)
..||+++...-+....+.-.+|..+.|++.|+.. .. ...+.++..- +++.+++ ..++|||+|..
T Consensus 123 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~--~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 190 (313)
T 2h3h_A 123 KGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEI--VD--ILNDEEDGARAVSLAEAALNAHPDLDAFFGVY 190 (313)
T ss_dssp CSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEE--EE--EEECSSCHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred CCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEE--EE--eecCCCCHHHHHHHHHHHHHHCcCceEEEEcC
Confidence 4599999987554455566799999999988741 12 2345454332 3344444 45799999863
No 136
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=81.47 E-value=4.8 Score=31.70 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=46.1
Q ss_pred CEEEEEEeeec-----HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 76 LRFALVVARFN-----ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 76 lRIaIVvArfN-----~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+||.||.+-=+ ...+..|++.+.+.|++.|. +++++++...+++.-..+++. ..|+||-
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~---ev~~~dL~~~~Dv~~~~~~l~---~aD~iv~ 89 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGH---QVKITTVDQGYDIESEIENYL---WADTIIY 89 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTC---CEEEEEGGGCCCHHHHHHHHH---HCSEEEE
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCC---EEEEEECCCccCHHHHHHHHH---hCCEEEE
Confidence 58999987653 47888999999999998886 478888887788776666665 6788774
No 137
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=81.46 E-value=8.7 Score=30.15 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=42.4
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s-~~yDAVIaLG 142 (145)
..||+++....+......=.+|..+.|+++|+... .+ .+|.|...- +++.+++. .++|||+|..
T Consensus 179 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~--~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 246 (349)
T 1jye_A 179 HQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPI--AE--REGDWSAMSGFQQTMQMLNEGIVPTAMLVAN 246 (349)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCS--EE--EECCSSHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcc--cc--ccCCCChHHHHHHHHHHHhCCCCCCEEEECC
Confidence 45899999876544455567999999999998532 22 345554332 33444444 5799999863
No 138
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=81.43 E-value=2 Score=31.73 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred hhhhhhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHHHH---HHHHhh-cCCC
Q 032216 61 EAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVV---AQQLGK-SGKY 135 (145)
Q Consensus 61 ~a~~~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELPla---ak~La~-s~~y 135 (145)
.+++++-..+......||+++...-+......-.+|..+.|+++ |+. +. ..+.+.+...-+ ++.+++ ..++
T Consensus 113 ~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (276)
T 3ksm_A 113 LAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIR---II-AAPYAGDDRGAARSEMLRLLKETPTI 188 (276)
T ss_dssp HHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEE---EE-ECCBCCSSHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcE---EE-EEecCCCcHHHHHHHHHHHHHhCCCc
Confidence 34455433321114569999988766666667789999999988 653 21 234566655433 344444 4589
Q ss_pred cEEEEe
Q 032216 136 TAVLCI 141 (145)
Q Consensus 136 DAVIaL 141 (145)
|||+|.
T Consensus 189 ~ai~~~ 194 (276)
T 3ksm_A 189 DGLFTP 194 (276)
T ss_dssp CEEECC
T ss_pred eEEEEC
Confidence 999985
No 139
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=81.41 E-value=8.5 Score=32.95 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=40.2
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc-----cchHHHHHHHHhhcCCC---cEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIGVVAQQLGKSGKY---TAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG-----AfELPlaak~La~s~~y---DAVIaLG 142 (145)
.+.|+.||..+.-.. ...+...+.|++.|+. +.++.+|+ .+|-=..+-..+...++ |.||++|
T Consensus 61 ~~~rvlIVtd~~v~~---~~~~~v~~~L~~~g~~---~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvG 131 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP---LYAPAIISLLDHIGCQ---HALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALG 131 (390)
T ss_dssp TTCEEEEEEETTTHH---HHHHHHHHHHHHHTCE---EEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CCCEEEEEECCcHHH---HHHHHHHHHHHHcCCe---EEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 456899988765443 3667777888888874 56667787 33333333223334444 8999998
No 140
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=81.01 E-value=4.6 Score=30.22 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=42.1
Q ss_pred EEEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHHHH---HHHHhh-cCCCcEEEEe
Q 032216 77 RFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVV---AQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 77 RIaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELPla---ak~La~-s~~yDAVIaL 141 (145)
||+++...-+......-.+|..+.|+++ |+. +.. ...|.+...-+ ++.+++ ..++|||+|.
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 202 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLS---IVD-SVSGNYDPVTSERVMRQVIDSGIPFDAVYCH 202 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEE---EEE-EEECTTCHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcE---Eee-eccCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 9999997766666677789999999998 763 221 24565554433 344444 4689999986
No 141
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=80.94 E-value=4.7 Score=30.12 Aligned_cols=64 Identities=11% Similarity=-0.052 Sum_probs=41.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaLG 142 (145)
..||+++...-+....+.-.+|..+.++++|.. +.. .++|.+...- +++.+++ ..++|||+|..
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 198 (289)
T 3brs_A 131 SGKIGVISFVKNSKTAMDREEGLKIGLSDDSNK---IEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGLN 198 (289)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGG---EEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCc---EEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEECC
Confidence 469999987755455566679999999999863 221 2345443322 2344444 45799999863
No 142
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=80.54 E-value=7.5 Score=30.34 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=45.3
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||++|.. |....+.+.++..+.|+++|+. -+....+ +|..+.--.++++.+ .+.|+|++.+
T Consensus 139 g~~~vaii~~--~~~~g~~~~~~~~~~~~~~G~~--v~~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~ 203 (375)
T 3i09_A 139 GGKTWFFLTA--DYAFGKALEKNTADVVKANGGK--VLGEVRHPLSASDFSSFLLQAQS-SKAQILGLAN 203 (375)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCE--EEEEEEECTTCSCCHHHHHHHHH-TCCSEEEEEC
T ss_pred CCceEEEEec--ccHHHHHHHHHHHHHHHHcCCE--EeeeeeCCCCCccHHHHHHHHHh-CCCCEEEEec
Confidence 3569999965 4556778999999999999974 2223333 477776666666653 5789998754
No 143
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=80.53 E-value=7.5 Score=29.03 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=40.8
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEe
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaL 141 (145)
.||+++...-+......=.+|..+.|+++|+. +.. ..+|.|+..- +++.+++ ..++|||+|.
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 189 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFN---VLA-SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ 189 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCE---EEE-EEECTTCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCE---EEE-ecCCCCCHHHHHHHHHHHHHhCCCccEEEEC
Confidence 59999987654444455569999999999874 221 2456554442 3344444 4579999985
No 144
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=80.44 E-value=3.8 Score=34.25 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=38.6
Q ss_pred CCEEEEEEeeecHHHHHH-HHHHHHHHHHHCCCCCCCeEEE-EecccchHH--HHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKL-LLEGALETFKKYSVKEENIDVV-WVPGSFEIG--VVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~-LleGA~~~L~~~Gv~~e~I~vv-~VPGAfELP--laak~La~s~~yDAVIaLG 142 (145)
..|+.||..+ .+.+. +.+...+.|++.|+. +.++ .|.+-=.+- ..+-.+++..++|.||++|
T Consensus 31 ~~~~liVtd~---~~~~~g~~~~v~~~L~~~gi~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 96 (383)
T 3ox4_A 31 FKNALIVSDA---FMNKSGVVKQVADLLKAQGIN---SAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLG 96 (383)
T ss_dssp CCEEEEEEEH---HHHHTTHHHHHHHHHHTTTCE---EEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCEEEEEECC---chhhCchHHHHHHHHHHcCCe---EEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 3588888875 24443 678888899988874 3333 233322222 2233344566899999998
No 145
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=80.21 E-value=8 Score=30.04 Aligned_cols=61 Identities=5% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaLG 142 (145)
..+|+||.+.--+. .-.+.|.+.|++.|+. ..++|-|+.-.|--...+++ ...++.||+..
T Consensus 3 ~~~V~Iimgs~SD~---~v~~~a~~~l~~~gi~----~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 66 (163)
T 3ors_A 3 AMKVAVIMGSSSDW---KIMQESCNMLDYFEIP----YEKQVVSAHRTPKMMVQFASEARERGINIIIAGA 66 (163)
T ss_dssp CCCEEEEESCGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCeEEEEECcHHHH---HHHHHHHHHHHHcCCC----EEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35899999998877 5668899999999996 45689999999999888864 35689888764
No 146
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=80.20 E-value=2.6 Score=33.26 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=40.8
Q ss_pred CCCCEEEEEEee-----ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch-HHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvAr-----fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE-LPlaak~La~s~~yDAVIaLG~ 143 (145)
.+...||+|... |....-..+++|+.++++ |. ++.++.....-+ -....-..+...++||||.++.
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~---~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DT---QLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SC---EEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hC---CEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecC
Confidence 445679999987 544555678899988877 54 355665543321 1122223344679999998764
No 147
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=79.88 E-value=4.2 Score=31.60 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=44.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||++|... +......+.++..+.|+++|+.. .....-+|..+.--.++++.+ .+.|+|++.+
T Consensus 149 ~~~iaii~~~-~~~~~~~~~~~~~~~~~~~G~~v--~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~ 212 (366)
T 3td9_A 149 AKRVVVFTDV-EQDYSVGLSNFFINKFTELGGQV--KRVFFRSGDQDFSAQLSVAMS-FNPDAIYITG 212 (366)
T ss_dssp CCEEEEEEET-TCHHHHHHHHHHHHHHHHTTCEE--EEEEECTTCCCCHHHHHHHHH-TCCSEEEECS
T ss_pred CcEEEEEEeC-CCcHHHHHHHHHHHHHHHCCCEE--EEEEeCCCCccHHHHHHHHHh-cCCCEEEEcc
Confidence 4599999653 33445667899999999999842 222245677777677777754 5799999854
No 148
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=79.66 E-value=9.7 Score=29.91 Aligned_cols=62 Identities=6% Similarity=0.075 Sum_probs=50.5
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEe
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCI 141 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaL 141 (145)
.+..||+||.+.--+. .-.+.|.+.|++.|+. ..+.|-|+.-.|--...+++ ..+++.||+.
T Consensus 10 ~~~P~V~IimGS~SD~---~v~~~a~~~l~~~gi~----~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~ 74 (173)
T 4grd_A 10 HSAPLVGVLMGSSSDW---DVMKHAVAILQEFGVP----YEAKVVSAHRMPDEMFDYAEKARERGLRAIIAG 74 (173)
T ss_dssp CSSCSEEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEE
T ss_pred CCCCeEEEEeCcHhHH---HHHHHHHHHHHHcCCC----EEEEEEccccCHHHHHHHHHHHHhcCCeEEEEe
Confidence 3456999999998887 6678999999999996 45789999999988777654 3678988875
No 149
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=79.17 E-value=2.1 Score=33.93 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=47.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecccchHHHHHHH--HhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQ--LGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPGAfELPlaak~--La~s~~yDAVIaLG 142 (145)
..||+||... |......+.++..+.|+++|+. -+.... -+|..+.--.+++ +. ..+.|+|++.+
T Consensus 141 ~~~iaii~~~-~~~~g~~~~~~~~~~l~~~G~~--v~~~~~~~~~~~d~~~~~~~~~l~-~~~~dav~~~~ 207 (391)
T 3eaf_A 141 QGKLALAYDS-KVAYSRSPIGAIKKAAPSLGLQ--VVGDYDLPLRATEADAERIAREML-AADPDYVWCGN 207 (391)
T ss_dssp SEEEEEEECT-TCHHHHTTHHHHHHHTGGGTEE--EEEEEECCTTCCHHHHHHHHHHHH-TTCCSEEEECS
T ss_pred CCEEEEEEec-CChhHHHHHHHHHHHHHHcCCc--eeeeeccCCCCcCHHHHHHHHHHH-HcCCCEEEEec
Confidence 4699999987 7777888999999999999974 122223 3466676666666 54 46899999865
No 150
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=79.07 E-value=8.9 Score=29.97 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=50.2
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaLG 142 (145)
..+|+||.+.--+. .-.+.|.+.|++.|+. ..++|-|+.-.|--...+++ ...++.||+..
T Consensus 6 ~~~V~IimgS~SD~---~v~~~a~~~l~~~gi~----~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 6 KIFVAILMGSDSDL---STMETAFTELKSLGIP----FEAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp CCEEEEEESCGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCcEEEEECcHHhH---HHHHHHHHHHHHcCCC----EEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35899999998877 5668999999999996 44789999999998888864 36788888763
No 151
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=78.62 E-value=4.4 Score=33.06 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=40.4
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ec-ccchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VP-GSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VP-GAfELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||..+.= .+...+...+.|++.|+. +.++. +| +.+|-=..+ ..++..++|.||++|
T Consensus 35 ~~~livtd~~~---~~~~~~~v~~~L~~~g~~---~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavG 96 (354)
T 3ce9_A 35 KRVSLYFGEGI---YELFGETIEKSIKSSNIE---IEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIG 96 (354)
T ss_dssp SEEEEEEETTH---HHHHHHHHHHHHHTTTCE---EEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEE
T ss_pred CeEEEEECccH---HHHHHHHHHHHHHHcCCe---EEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEEC
Confidence 48888886532 234567777888888874 33443 44 466655555 556667999999998
No 152
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=78.24 E-value=7.2 Score=30.62 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=50.8
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEee
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIG 142 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaLG 142 (145)
....+|+||.+.--+. .-.+.|.+.|++.|+. ..+.|-|+.-.|--...+++ ...++.||+..
T Consensus 5 ~~~~~V~IimgS~SD~---~v~~~a~~~L~~~gi~----~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 5 GERPRVGVIMGSDSDW---PVMADAAAALAEFDIP----AEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp -CCCSEEEEESCGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCCCeEEEEECcHHhH---HHHHHHHHHHHHcCCC----EEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3445899999998887 5668999999999996 45789999999998888864 35788888764
No 153
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=77.77 E-value=7.9 Score=29.27 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=40.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHHHH---HHHHhh-cCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVV---AQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELPla---ak~La~-s~~yDAVIaL 141 (145)
..||+++...-+......=.+|..+.|+++ |+. +. ..++|.|...-+ ++.+++ ..++|||+|.
T Consensus 133 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~---~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 200 (288)
T 1gud_A 133 GGEVAIIEGKAGNASGEARRNGATEAFKKASQIK---LV-ASQPADWDRIKALDVATNVLQRNPNIKAIYCA 200 (288)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEE---EE-EEEECTTCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred CCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcE---EE-EeecCCccHHHHHHHHHHHHHhCCCceEEEEC
Confidence 469999987655444444569999999988 763 11 234666655432 344544 4579999985
No 154
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=77.72 E-value=9.9 Score=29.87 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=49.7
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaLG 142 (145)
.+|+||.+.--+. .-.+.|.+.|++.|+. ..++|-|+.-.|--...+++ ...++.||+..
T Consensus 13 ~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~----~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 75 (174)
T 3kuu_A 13 VKIAIVMGSKSDW---ATMQFAADVLTTLNVP----FHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGN 75 (174)
T ss_dssp CCEEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred CcEEEEECcHHHH---HHHHHHHHHHHHcCCC----EEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4799999998877 5668899999999996 45789999999999988865 35689888764
No 155
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=77.57 E-value=5.7 Score=30.70 Aligned_cols=63 Identities=3% Similarity=-0.105 Sum_probs=41.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaL 141 (145)
..||+++...-+. ....-.+|..+.|+++|. .+ .. ..++|.+..-- +++.+++ ..++|||+|.
T Consensus 175 ~~~I~~i~~~~~~-~~~~R~~Gf~~~l~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 241 (342)
T 1jx6_A 175 HTYYSVLYFSEGY-ISDVRGDTFIHQVNRDNN-FE-LQ-SAYYTKATKQSGYDAAKASLAKHPDVDFIYAC 241 (342)
T ss_dssp TCEEEEECCSTTH-HHHHHHHHHHHHHHHHHC-CE-EE-EEECCCSSHHHHHHHHHHHHHHCCCCSEEEES
T ss_pred CceEEEEEcCCcc-hhhHHHHHHHHHHHhCCC-cE-EE-EEecCCCCHHHHHHHHHHHHHhCCCccEEEEC
Confidence 4699999877654 455567999999999986 22 22 22456554432 3344544 4579999986
No 156
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=77.37 E-value=5.9 Score=30.17 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=42.2
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecccchHH---HHHHHHhhc----CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIG---VVAQQLGKS----GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPGAfELP---laak~La~s----~~yDAVIaLG 142 (145)
..||+++...-+......-.+|.++.|+++|. ++++. ..|.|... -+++.+++. .++|||+|..
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~n 199 (306)
T 2vk2_A 128 PCNVVELQGTVGASVAIDRKKGFAEAIKNAPN----IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHN 199 (306)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT----EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEESS
T ss_pred CCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC----eEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCeeEEEECC
Confidence 46999998875544455567999999999885 22222 35655433 234555554 5799999863
No 157
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=77.33 E-value=6.8 Score=30.30 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=41.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaLG 142 (145)
..||+++...-+......-.+|..+.|+++ |+. +.. .+.|.|...- +++.+++ ..++|||+|..
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n 196 (325)
T 2x7x_A 128 KGNIVELTGLSGSTPAMERHQGFMAAISKFPDIK---LID-KADAAWERGPAEIEMDSMLRRHPKIDAVYAHN 196 (325)
T ss_dssp EEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEE---EEE-EEECTTSHHHHHHHHHHHHHHCSCCCEEEESS
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCE---EEe-eecCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 358999987655445555679999999998 763 211 2345554332 2344444 45799999863
No 158
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=77.07 E-value=3.8 Score=32.28 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=41.7
Q ss_pred CCCEEEEEEee---------ec--------HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccc--hHHH-HHHHHhh-c
Q 032216 74 EGLRFALVVAR---------FN--------ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGV-VAQQLGK-S 132 (145)
Q Consensus 74 ~~lRIaIVvAr---------fN--------~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAf--ELPl-aak~La~-s 132 (145)
...|||++..+ .+ ....+.=++|..+.|+++|+..+...++. .|.+ |--+ +++++++ .
T Consensus 188 G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~ 266 (366)
T 3h5t_A 188 GHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIME-CWINNRQHNFEVAKELLETH 266 (366)
T ss_dssp TCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEE-ESSCCHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEE-cCCCCHHHHHHHHHHHHcCC
Confidence 34589999843 21 22334556999999999998754433333 3433 3332 4455554 4
Q ss_pred CCCcEEEEe
Q 032216 133 GKYTAVLCI 141 (145)
Q Consensus 133 ~~yDAVIaL 141 (145)
.++|||+|.
T Consensus 267 ~~~~ai~~~ 275 (366)
T 3h5t_A 267 PDLTAVLCT 275 (366)
T ss_dssp TTCCEEEES
T ss_pred CCCcEEEEC
Confidence 589999996
No 159
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=76.58 E-value=4.3 Score=30.04 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=43.3
Q ss_pred CCCCEEEEEEe---eecHHH-----HHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVA---RFNELV-----TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvA---rfN~~I-----t~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~La~s~~yDAVIaLG~ 143 (145)
.+.+|+|||.. ++..++ +|.=-.--.+.|++.|+. -+....||=-.|.-. +++.+...+++|.||+-|-
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~--v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHK--IIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 35689999974 232221 122122245667888984 466777888877544 4455555678999999874
No 160
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=75.80 E-value=8.1 Score=29.04 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=40.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHHH---HHHHHhh-cCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELPl---aak~La~-s~~yDAVIaLG 142 (145)
..||+++...-+......=.+|..+.|+++ |+. +. ...+|.|+..- +++.+++ ..++|||+|..
T Consensus 123 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 191 (283)
T 2ioy_A 123 KGNVVELEGIPGASAARDRGKGFDEAIAKYPDIK---IV-AKQAADFDRSKGLSVMENILQAQPKIDAVFAQN 191 (283)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEE---EE-EEEECTTCHHHHHHHHHHHHHHCSCCCEEEESS
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCE---EE-eeccCCCCHHHHHHHHHHHHHhCCCccEEEECC
Confidence 469999987544444445569999999987 653 21 12456555442 3344554 45799999863
No 161
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=75.74 E-value=1.9 Score=33.50 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=41.7
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaLG 142 (145)
..||+++...-+....+.-.+|..+.|+++|+..+ ...++|.|...- +++.+++..++|||+|..
T Consensus 172 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~~ 239 (330)
T 3ctp_A 172 CRKILHIKGPEVFEATELRYKGFLDGARAKDLEID---FIEFQHDFQVKMLEEDINSMKDIVNYDGIFVFN 239 (330)
T ss_dssp CCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE---EEECSSSCCGGGGGCCCTTGGGGGGSSEEEESS
T ss_pred CCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc---eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEECC
Confidence 45899998875444445566999999999998532 222456554321 233444335799999863
No 162
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=75.43 E-value=4.4 Score=30.30 Aligned_cols=66 Identities=11% Similarity=-0.052 Sum_probs=40.6
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHC-CCC-CCCeEEEEecccchHH---HHHHHHhhc-C---CCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKY-SVK-EENIDVVWVPGSFEIG---VVAQQLGKS-G---KYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~-Gv~-~e~I~vv~VPGAfELP---laak~La~s-~---~yDAVIaL 141 (145)
...||+++...-.......-++|..+.|+++ |+. .+...+ ..|.+..- -+++++++. . ++|||+|.
T Consensus 124 g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~ 198 (291)
T 3l49_A 124 GKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELR--DVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWAC 198 (291)
T ss_dssp TCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBC--CCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEES
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeecc--CCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEEC
Confidence 3459999987666666666679999999999 442 111111 23433322 234445543 4 79999985
No 163
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=75.09 E-value=13 Score=24.96 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 88 LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 88 ~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.-.+..++.+.+.+++.|+..+.++.....| +..-.+-+.++..++|-||.
T Consensus 66 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dliV~ 116 (147)
T 3hgm_A 66 DYATEIAVQAKTRATELGVPADKVRAFVKGG--RPSRTIVRFARKRECDLVVI 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEES--CHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCccceEEEEecC--CHHHHHHHHHHHhCCCEEEE
Confidence 4566788888999999998755557777778 45556666677788998764
No 164
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=74.69 E-value=10 Score=29.21 Aligned_cols=60 Identities=7% Similarity=0.101 Sum_probs=49.1
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---c-CCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---S-GKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s-~~yDAVIaLG 142 (145)
.+|+||.+.--+. .-.+.|.+.|++.|+. ..+.|-|+.-.|--...+++ . +.++.||+..
T Consensus 3 ~~V~Iimgs~SD~---~v~~~a~~~l~~~gi~----~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~A 66 (159)
T 3rg8_A 3 PLVIILMGSSSDM---GHAEKIASELKTFGIE----YAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIA 66 (159)
T ss_dssp CEEEEEESSGGGH---HHHHHHHHHHHHTTCE----EEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEEC
T ss_pred CeEEEEECcHHHH---HHHHHHHHHHHHcCCC----EEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEEC
Confidence 3799999988877 5668899999999996 44789999999998888764 2 3699999864
No 165
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=74.63 E-value=6.9 Score=28.27 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=30.3
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeccc
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGA 119 (145)
+||.||...-+. -|+.|.+...+.|++.|+. ++++.++-.
T Consensus 6 ~kilii~~S~~g-~T~~la~~i~~~l~~~g~~---v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRHG-ATAEMARQIARGVEQGGFE---ARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSSS-HHHHHHHHHHHHHHHTTCE---EEEEBCCCE
T ss_pred ceEEEEEeCCCC-hHHHHHHHHHHHHhhCCCE---EEEEEhhhc
Confidence 489999877654 5888989889999888863 666766653
No 166
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=74.36 E-value=8.7 Score=30.09 Aligned_cols=63 Identities=6% Similarity=-0.022 Sum_probs=44.7
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||+||.. |....+.+.++..+.|+++|+. .+....+ +|..+.--.++++.+ .+.|+|++.+
T Consensus 142 ~~~vaii~~--~~~~g~~~~~~~~~~~~~~G~~--v~~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~ 205 (379)
T 3n0w_A 142 YKTWFLMLP--DAAYGDLMNAAIRRELTAGGGQ--IVGSVRFPFETQDFSSYLLQAKA-SGAQLIVSTS 205 (379)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHHHHTCE--EEEEEEECTTCCCCHHHHHHHHH-HTCSEEEECC
T ss_pred CcEEEEEec--ccchhHHHHHHHHHHHHHcCCE--EEEEEeCCCCCCCHHHHHHHHHH-CCCCEEEEec
Confidence 469999965 4556678899999999999974 2223334 477776666666653 4789998764
No 167
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=72.85 E-value=11 Score=29.54 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=40.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaL 141 (145)
..||+++...-+....+.-.+|..+.|+++|+. .. .+ .+|.|...- +++.+++.+++ ||+|.
T Consensus 184 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~--~v-~~~~~~~~~~~~~~~~ll~~~~~-ai~~~ 248 (348)
T 3bil_A 184 ALPIGYLSGPMDTSTGRERLEDFKAACANSKIG-EQ--LV-FLGGYEQSVGFEGATKLLDQGAK-TLFAG 248 (348)
T ss_dssp CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCC-CC--EE-ECCCSSHHHHHHHHHHHHHTTCS-EEEES
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcC-cc--EE-EcCCCCHHHHHHHHHHHHcCCCC-EEEEc
Confidence 458999987755445556679999999999983 22 22 356654432 34556555447 99884
No 168
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=72.07 E-value=17 Score=28.48 Aligned_cols=60 Identities=3% Similarity=-0.002 Sum_probs=49.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhc---CCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS---GKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s---~~yDAVIaLG 142 (145)
.+|+||.+.--+. .-.+.|.+.|++.|+. ..++|-|+.-.|--...++++ ..++.||+..
T Consensus 12 ~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~----~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 12 SLVGVIMGSTSDW---ETMKYACDILDELNIP----YEKKVVSAHRTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp CSEEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CcEEEEECcHHHH---HHHHHHHHHHHHcCCC----EEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4799999998887 5668899999999996 457899999999988888753 4588888763
No 169
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=71.58 E-value=6.4 Score=30.95 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..||++|... ......+.++..+.|+++|+. -+....+ +|..+.--.++++.+ .+.|+|++.+
T Consensus 143 ~~~iaii~~~--~~~g~~~~~~~~~~l~~~G~~--v~~~~~~~~~~~d~~~~~~~l~~-~~~dav~~~~ 206 (392)
T 3lkb_A 143 GAKVALVVHP--SPFGRAPVEDARKAARELGLQ--IVDVQEVGSGNLDNTALLKRFEQ-AGVEYVVHQN 206 (392)
T ss_dssp TCEEEEEECS--SHHHHTTHHHHHHHHHHHTCE--EEEEEECCTTCCCCHHHHHHHHH-TTCCEEEEES
T ss_pred CCEEEEEEeC--CchhhhHHHHHHHHHHHcCCe--EEEEEeeCCCCcCHHHHHHHHHh-cCCCEEEEec
Confidence 4699999853 456778899999999999984 1222333 466666556666654 5799999754
No 170
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=71.29 E-value=18 Score=28.60 Aligned_cols=61 Identities=2% Similarity=0.028 Sum_probs=50.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhc---CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS---GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s---~~yDAVIaLG 142 (145)
..+|+||.+.--+. .-.+.|.+.|++.|+. ..++|-|+.-.|--...++++ ..++.||+..
T Consensus 21 ~~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~----~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 84 (182)
T 1u11_A 21 APVVGIIMGSQSDW---ETMRHADALLTELEIP----HETLIVSAHRTPDRLADYARTAAERGLNVIIAGA 84 (182)
T ss_dssp CCSEEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCEEEEEECcHHHH---HHHHHHHHHHHHcCCC----eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 34899999998887 5668899999999996 457899999999998888753 4588888763
No 171
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=71.13 E-value=26 Score=29.28 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=35.0
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHC------CCCCCCeEEEEecc---c--chHHHHHHHHhhcCC--C---cEEE
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKY------SVKEENIDVVWVPG---S--FEIGVVAQQLGKSGK--Y---TAVL 139 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~------Gv~~e~I~vv~VPG---A--fELPlaak~La~s~~--y---DAVI 139 (145)
.|+.||..+ .+.+...+...+.|++. |+. +.++.+|+ . +|-=..+-..+...+ + |.||
T Consensus 37 ~k~liVtd~---~v~~~~~~~v~~~L~~~~~~~~~g~~---~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iI 110 (393)
T 1sg6_A 37 TTYVLVTDT---NIGSIYTPSFEEAFRKRAAEITPSPR---LLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVI 110 (393)
T ss_dssp SEEEEEEEH---HHHHHHHHHHHHHHHHHHHHSSSCCE---EEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEE
T ss_pred CeEEEEECC---cHHHHHHHHHHHHHHhhhccccCCce---eEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 588888764 33333455556666655 542 44467887 2 222222223334455 7 9999
Q ss_pred Eee
Q 032216 140 CIG 142 (145)
Q Consensus 140 aLG 142 (145)
++|
T Consensus 111 alG 113 (393)
T 1sg6_A 111 ALG 113 (393)
T ss_dssp EEE
T ss_pred EEC
Confidence 998
No 172
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=69.06 E-value=17 Score=27.65 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=42.8
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--ecccchHHH---HHHHHhhc--CCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPGSFEIGV---VAQQLGKS--GKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~--VPGAfELPl---aak~La~s--~~yDAVIaLG 142 (145)
.||+++...-+....+.-.+|+.+.|+++|.. .++.++. ..+.+...- +++.++++ .++|||+|..
T Consensus 124 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~ 196 (313)
T 3m9w_A 124 GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDS-GKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN 196 (313)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEEESS
T ss_pred CcEEEEECCCCCccHHHHHHHHHHHHHhhccC-CCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEEECC
Confidence 39999987766555666679999999998532 2344332 255554332 34555544 5899999963
No 173
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=69.04 E-value=14 Score=29.88 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=35.7
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
.|++||+-..-..- +..+..++.|++.|+. +.+...-+.-+..-.++.++. .++|.||++|
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~---~~~~~t~~~~~~~~~~~~~~~-~~~d~vvv~G 90 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMT---IHVRVTWEKGDAARYVEEARK-FGVATVIAGG 90 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCC---EEEEECCSTTHHHHHHHHHHH-HTCSEEEEEE
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCc---EEEEEecCcchHHHHHHHHHh-cCCCEEEEEc
Confidence 46888775443221 2345677888888874 454443323344333444433 4699999998
No 174
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=69.02 E-value=11 Score=29.18 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHHH---HHHHHhh--cCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGK--SGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELPl---aak~La~--s~~yDAVIaL 141 (145)
..||+++...-+......-.+|..+.|+++ |+. +.. .+.|.|...- +++.+++ ..++|||+|.
T Consensus 136 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~ 204 (332)
T 2rjo_A 136 KGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQ---LLD-FQVADWNSQKAFPIMQAWMTRFNSKIKGVWAA 204 (332)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE---EEE-EEECTTCHHHHHHHHHHHHHHHGGGEEEEEES
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcE---EEe-eccCCCCHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 459999988755555566779999999998 764 211 1345554332 3344544 3579999985
No 175
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=68.90 E-value=12 Score=31.41 Aligned_cols=64 Identities=9% Similarity=-0.104 Sum_probs=44.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEec---ccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP---GSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP---GAfELPlaak~La~s~~yDAVIaLG 142 (145)
-.+||||.+ +++..+..++...+++++.|+.- .....+| +..+.--.+.+.++..+.|+||..|
T Consensus 185 w~~V~ii~~--dd~~G~~~~~~~~~~~~~~Gi~v--~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~ 251 (479)
T 3sm9_A 185 WTYVSTVAS--EGDYGETGIEAFEQEARLRNISI--ATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFM 251 (479)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHHTTTCEE--EEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred CeEEEEEEe--cchhhHHHHHHHHHHHHHCCceE--EEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEc
Confidence 359999998 56777888999999999999741 1223344 4455555554445556889999876
No 176
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=68.51 E-value=21 Score=27.46 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=46.5
Q ss_pred EEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 78 IaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
|+||.+.--+. .-.+.|.+.|++.|+. .-+.|-|+.-.|--...++++...+.||+..
T Consensus 2 V~Iimgs~SD~---~v~~~a~~~l~~~gi~----~dv~V~saHR~p~~~~~~~~~a~~~ViIa~A 59 (157)
T 2ywx_A 2 ICIIMGSESDL---KIAEKAVNILKEFGVE----FEVRVASAHRTPELVEEIVKNSKADVFIAIA 59 (157)
T ss_dssp EEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHCCCSEEEEEE
T ss_pred EEEEEccHHHH---HHHHHHHHHHHHcCCC----eEEEEEcccCCHHHHHHHHHhcCCCEEEEEc
Confidence 67777777766 5568899999999996 5678999999999999888754448888763
No 177
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=67.60 E-value=6.1 Score=32.82 Aligned_cols=67 Identities=6% Similarity=0.068 Sum_probs=40.8
Q ss_pred CCCCEEEEEEee-ecH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEe---cccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 73 NEGLRFALVVAR-FNE-LVTKLLLEGALETFKKYSVKEENIDVVWV---PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 73 ~~~lRIaIVvAr-fN~-~It~~LleGA~~~L~~~Gv~~e~I~vv~V---PGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+..|||+|..- .++ ...+.+.+|..+..+++|. ++++..+ |-.=+.--.++.|++ ++||.||+.|.
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~---~~~~~~~e~~~~~~d~~~~l~~l~~-~g~d~Ii~~g~ 95 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGD---KVETTFLENVAEGADAERSIKRIAR-AGNKLIFTTSF 95 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTT---TEEEEEECSCCTTHHHHHHHHHHHH-TTCSEEEECSG
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCC---ceEEEEEecCCCHHHHHHHHHHHHH-CCCCEEEECCH
Confidence 456799999863 443 4566677888888888882 2344333 221123345566665 56999998873
No 178
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=67.50 E-value=9.3 Score=29.57 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+++||++..... .+.++ ...|+++|+..++++.+.++ .+-+...| ++|+.||++.
T Consensus 128 DLkGk~i~v~~gs~----~~~~~---~~~l~~~Gl~~~~v~~v~~~----~~~~~~al-~~G~vDa~~~ 184 (324)
T 3ksx_A 128 DLKGKRIAFQKGSS----AHNLL---LRVLAKSGLSMRDITPLYLS----PANARAAF-AAGQVDAWAI 184 (324)
T ss_dssp GGTTCEEEECTTSH----HHHHH---HHHHHHTTCCGGGSEEEECC----HHHHHHHH-HTTCCSEEEE
T ss_pred HhCCCEEEecCCCh----HHHHH---HHHHHHcCCCHHHeEEEeCC----HHHHHHHH-HcCCCCEEEE
Confidence 45688998752222 22232 23567889988888887764 23333333 5789999765
No 179
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=67.30 E-value=13 Score=29.99 Aligned_cols=62 Identities=8% Similarity=0.046 Sum_probs=45.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..|++|+.. |....+.+.+.+.+++++.|...-..+ ..-++ -+.-..++++ ..+.|+|+..|
T Consensus 122 ~k~vail~~--~~~yG~~~~~~F~~~~~~~Gg~vv~~~-~y~~~-~d~~~~l~~i--~~~pDaV~~~~ 183 (325)
T 2h4a_A 122 VRNPLVAMP--QNDLGQRVGNAFNVRWQQLAGTDANIR-YYNLP-ADVTYFVQEN--NSNTTALYAVA 183 (325)
T ss_dssp CCSCEEEEE--SSHHHHHHHHHHHHHHHHHHSSCCEEE-EESST-THHHHHHHHS--TTCCCEEEECC
T ss_pred CCeEEEEEc--CCcHHHHHHHHHHHHHHHcCCCcceeE-ecCCH-HHHHHHHHhc--CCCCCEEEEeC
Confidence 458999874 888999999999999999998632222 22345 5776666666 36899998865
No 180
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=67.22 E-value=7.4 Score=29.63 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=36.2
Q ss_pred CCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 71 ~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+.+++|||+...... +.+ ....|+++|+..++++.+.++ +++ ...| .++++||++.
T Consensus 102 ~DL~Gk~i~~~~~~~~----~~~---~~~~l~~~Gl~~~~v~~~~~~--~~~---~~al-~~G~vDa~~~ 158 (302)
T 3ix1_A 102 ADLVGLTVGYPGIPVN----EPI---LKTMVEAAGGDYEQVHLMDVG--FEL---GASI-VSGRADAVVG 158 (302)
T ss_dssp GGGTTSEEEECSCTTH----HHH---HHHHHHHTTCCGGGCEEEECT--TCH---HHHH-HHSSSSEEEE
T ss_pred HHcCCCEEEeCCCcch----HHH---HHHHHHHcCCCHHHeEEEecC--ccH---HHHH-hCCCCCEEEE
Confidence 3557889987554332 223 334567889988888888775 342 2333 3589999863
No 181
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=67.02 E-value=23 Score=28.93 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=36.4
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHH--HHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVA--QQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaa--k~La~s~~yDAVIaLG 142 (145)
.|+.||..+ .+.+.+.+...+.|++.|+. +.....+|-=..+.+- ...++..++|.||++|
T Consensus 32 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~---~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavG 94 (370)
T 1jq5_A 32 NKTVVIADE---IVWKIAGHTIVNELKKGNIA---AEEVVFSGEASRNEVERIANIARKAEAAIVIGVG 94 (370)
T ss_dssp SEEEEEECH---HHHHHTHHHHHHHHHTTTCE---EEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CeEEEEECh---HHHHHHHHHHHHHHHHcCCe---EEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 589888865 33334667777888888874 2223345522222221 1233456799999998
No 182
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=66.88 E-value=16 Score=28.61 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=45.7
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHC--CCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKY--SVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~--Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||++|.. +......+.++..+.|+++ |+. .+....+ +|..+.--.++++.+ .+.|+|++.+
T Consensus 141 g~~~vaii~~--~~~~g~~~~~~~~~~l~~~~~g~~--vv~~~~~~~~~~d~~~~~~~i~~-~~~d~v~~~~ 207 (387)
T 3i45_A 141 PITRWATIAP--NYEYGQSAVARFKELLLAARPEVT--FVAEQWPALYKLDAGPTVQALQQ-AEPEGLFNVL 207 (387)
T ss_dssp SCCEEEEECC--SSHHHHHHHHHHHHHHHHHCTTCE--EEEEECCCTTCCCHHHHHHHHHH-TCCSEEEECC
T ss_pred CCCeEEEEeC--CchHhHHHHHHHHHHHHHhCCCcE--EEeeecCCCCCcCHHHHHHHHHh-CCCCEEEEcC
Confidence 3579999985 5567788999999999998 553 2222333 477888777777654 5789998764
No 183
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=66.78 E-value=20 Score=27.59 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=41.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecccchHHHH---HHHHhh-cCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVV---AQQLGK-SGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPGAfELPla---ak~La~-s~~yDAVIaL 141 (145)
..||+++...-+..-...-.+|+.+.|++++. +++++. ..|.|...-+ ++.+++ ..++|||+|.
T Consensus 128 ~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~ 196 (316)
T 1tjy_A 128 KAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP---GWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAP 196 (316)
T ss_dssp SEEEEEEESCSSCHHHHHHHHHHHHHHHHHCT---TEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEEC
T ss_pred CCEEEEEEcCCCChhHHHHHHHHHHHHHhhCC---CcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 34999998765555556677999999987653 233332 3455544332 333444 4579999985
No 184
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=66.49 E-value=12 Score=27.43 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=39.6
Q ss_pred CCEEEEEEeee-cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHH---HHHhhcCCCcEEEEe
Q 032216 75 GLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVA---QQLGKSGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArf-N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaa---k~La~s~~yDAVIaL 141 (145)
..||+++.... +....+.-.+|..+.|+++|+.. +. +++.+...-+. +++++ .++|||+|.
T Consensus 115 ~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~---~~--~~~~~~~~~~~~~~~~~l~-~~~~ai~~~ 179 (255)
T 1byk_A 115 HRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP---VA--ALPGLAMKQGYENVAKVIT-PETTALLCA 179 (255)
T ss_dssp CCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC---EE--ECCCSCHHHHHHHSGGGCC-TTCCEEEES
T ss_pred CCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCc---ce--eecCCccchHHHHHHHHhc-CCCCEEEEe
Confidence 45899998652 32233445699999999999852 22 46666554333 33443 579999985
No 185
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=66.33 E-value=14 Score=29.12 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=40.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EecccchHHH----HHHHHhhcCCCcEEEEe
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGV----VAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv-~VPGAfELPl----aak~La~s~~yDAVIaL 141 (145)
.|||+|.+.-...+. .-++|..+.++++|.. +++. ...|.|.-|- +++.|++. +.|+|+|.
T Consensus 130 r~Ig~i~g~~~~~~~-~r~~Gf~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~ 195 (318)
T 2fqx_A 130 SAVGFIVGMELGMMP-LFEAGFEAGVKAVDPD---IQVVVEVANTFSDPQKGQALAAKLYDS-GVNVIFQV 195 (318)
T ss_dssp CEEEEEESCCSTTTH-HHHHHHHHHHHHHCTT---CEEEEEECSCSSCHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cEEEEEeCcccHHHH-HHHHHHHHHHHHHCCC---CEEEEEEccCccCHHHHHHHHHHHHHC-CCcEEEEC
Confidence 499999876444444 4469999999999874 3322 3467774332 34555554 58999986
No 186
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=65.64 E-value=19 Score=27.02 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=41.2
Q ss_pred CEEEEEE-eeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHH---HHHHhh-cCCCcE--EEEe
Q 032216 76 LRFALVV-ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGK-SGKYTA--VLCI 141 (145)
Q Consensus 76 lRIaIVv-ArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPla---ak~La~-s~~yDA--VIaL 141 (145)
.||+++. +.-.....+.-.+|+.+.|+++|.....+ +....+.+...-+ ++.+++ ..++|| |+|.
T Consensus 133 ~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~ 204 (306)
T 8abp_A 133 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI-YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 204 (306)
T ss_dssp GGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGE-EEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECS
T ss_pred cceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEE-EeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 4899996 55444555556799999999999753322 2234566665543 333443 457999 7664
No 187
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=65.57 E-value=28 Score=27.10 Aligned_cols=60 Identities=2% Similarity=0.028 Sum_probs=48.7
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaLG 142 (145)
.+|+||.+.--+. .-.+.|.+.|++.|+. ..++|-|+.-.|--+..+++ ...++.||+..
T Consensus 6 p~V~IimgS~SD~---~v~~~a~~~l~~~gi~----~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 68 (166)
T 3oow_A 6 VQVGVIMGSKSDW---STMKECCDILDNLGIG----YECEVVSAHRTPDKMFDYAETAKERGLKVIIAGA 68 (166)
T ss_dssp EEEEEEESSGGGH---HHHHHHHHHHHHTTCE----EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CeEEEEECcHHhH---HHHHHHHHHHHHcCCC----EEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3799999998877 5668899999999994 56789999999988777754 34689998864
No 188
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=65.53 E-value=19 Score=26.82 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=38.4
Q ss_pred CCE--EEEEEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHH---HHHHHHhh-cCCCcEEEEee
Q 032216 75 GLR--FALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIG 142 (145)
Q Consensus 75 ~lR--IaIVvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELP---laak~La~-s~~yDAVIaLG 142 (145)
..| |+++...-+......-.+|..+.|+++ |+. +.. ..+|.|+.. -+++.+++ ..++|||+|..
T Consensus 129 ~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 129 AKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK---MVA-QQSAEFDRDTAYKVTEQILQAHPEIKAIWCGN 199 (290)
T ss_dssp CSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE---EEE-EEECTTCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred ccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE---EEE-eccCCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 346 676765434344555679999999988 653 211 235555433 23445554 45799999853
No 189
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=65.21 E-value=9.2 Score=27.58 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=44.7
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+..|..|...+. -....|...|++.+.+-.++.+-.-|.=.++.+.++++.|.+||+
T Consensus 33 ~r~ilwi~pp~~---------~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~ 89 (119)
T 1ofu_X 33 ARWLTLIAPPAS---------LTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 89 (119)
T ss_dssp SSEEEEESCCTT---------SCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CccEEEECCCCC---------CCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEE
Confidence 446777765542 134567788999999999998888888899999999999999986
No 190
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=64.36 E-value=13 Score=27.91 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=40.4
Q ss_pred EEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--ecccchHHH---HHHHHhh-cCCCcEEEEee
Q 032216 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPGSFEIGV---VAQQLGK-SGKYTAVLCIG 142 (145)
Q Consensus 77 RIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~--VPGAfELPl---aak~La~-s~~yDAVIaLG 142 (145)
||+++...-+......-.+|..+.|++++.. ++++. .++.+...- +++.+++ ..++|||+|..
T Consensus 129 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 197 (303)
T 3d02_A 129 GYVIYVGSLTVPQHNLWADLLVKYQKEHYPD---MHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFG 197 (303)
T ss_dssp EEEEECSCSSCHHHHHHHHHHHHHHHHHCTT---EEESSSCBSCTTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHhhCCC---CEEEEeecCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 8999987655555666779999999987642 33322 244454332 3344444 45799999864
No 191
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=64.33 E-value=19 Score=30.58 Aligned_cols=64 Identities=9% Similarity=-0.122 Sum_probs=44.4
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEec---ccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP---GSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP---GAfELPlaak~La~s~~yDAVIaLG 142 (145)
-.+|+||.+. ++..+...+...++++++|+.- .....+| +.-++--.++++.+..+.|+||..|
T Consensus 186 w~~V~ii~~d--~~~g~~~~~~~~~~~~~~gi~v--~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~ 252 (555)
T 2e4u_A 186 WTYVSTVASE--GDYGETGIEAFEQEARLRNICI--ATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFM 252 (555)
T ss_dssp CCEEEEEEES--STTHHHHHHHHHHHHHTTTCEE--EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred CeEEEEEEee--ChHHHHHHHHHHHHHHHCCccE--EEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEc
Confidence 3599999985 3455667788889999999741 1234455 6666655677776556789998876
No 192
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=64.14 E-value=20 Score=23.86 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 86 NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 86 N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+...+...+...+.+++.|+...+++....-| +..-.+-..++..++|-||.
T Consensus 60 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g--~~~~~I~~~a~~~~~dliV~ 112 (143)
T 3fdx_A 60 MDELREGSETQLKEIAKKFSIPEDRMHFHVAEG--SPKDKILALAKSLPADLVII 112 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEES--CHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCceEEEEEec--ChHHHHHHHHHHhCCCEEEE
Confidence 345566677777777788888766677777777 45566666777789997764
No 193
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=63.20 E-value=17 Score=28.27 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=39.2
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH----HHHHHhhcCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV----VAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl----aak~La~s~~yDAVIaL 141 (145)
..|||+|.+.-+.. -++|..+.++++|.. ++.+ ...|.|.-|- +++.|++. ++|+|+|.
T Consensus 126 ~~~Ig~i~g~~~~~----r~~Gf~~~~~~~~~~--~~~~-~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~ 188 (296)
T 2hqb_A 126 THKVGVIAAFPWQP----EVEGFVDGAKYMNES--EAFV-RYVGEWTDADKALELFQELQKE-QVDVFYPA 188 (296)
T ss_dssp SSEEEEEESCTTCH----HHHHHHHHHHHTTCC--EEEE-EECSSSSCHHHHHHHHHHHHTT-TCCEEECC
T ss_pred CCeEEEEcCcCchh----hHHHHHHHHHHhCCC--eEEE-EeeccccCHHHHHHHHHHHHHC-CCcEEEEC
Confidence 35999998753332 468999999999974 2333 3468774332 34556654 59999983
No 194
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=62.77 E-value=13 Score=30.40 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=30.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..|||+||.-...+ .+...+.|+++|+. ++..+-..+. -+++|.||+||
T Consensus 28 ~~mki~iv~~~~~~------~~~l~~~L~~~g~~-----v~~~~~~~~~---------~~~~DlvIvlG 76 (278)
T 1z0s_A 28 GGMRAAVVYKTDGH------VKRIEEALKRLEVE-----VELFNQPSEE---------LENFDFIVSVG 76 (278)
T ss_dssp --CEEEEEESSSTT------HHHHHHHHHHTTCE-----EEEESSCCGG---------GGGSSEEEEEE
T ss_pred cceEEEEEeCCcHH------HHHHHHHHHHCCCE-----EEEccccccc---------cCCCCEEEEEC
Confidence 35899988765544 45667888988873 3333322111 13789999998
No 195
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=62.62 E-value=35 Score=26.94 Aligned_cols=60 Identities=8% Similarity=0.151 Sum_probs=49.8
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaLG 142 (145)
..|+||.+.--+. .-.+.|.+.|++.|+. ..++|-|+.-.|--...+++ ...++.|||..
T Consensus 14 ~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~----~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 76 (183)
T 1o4v_A 14 PRVGIIMGSDSDL---PVMKQAAEILEEFGID----YEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGA 76 (183)
T ss_dssp CEEEEEESCGGGH---HHHHHHHHHHHHTTCE----EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CeEEEEeccHHHH---HHHHHHHHHHHHcCCC----eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 4899999998887 6668899999999996 56789999999998888865 34688888764
No 196
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=62.27 E-value=16 Score=28.60 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=36.1
Q ss_pred CC-CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KN-EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~-~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+. +++|||+...--... .++ ...|+++|+..++++++.++. -++ .+. +++|++||++.
T Consensus 150 DL~kGk~i~v~~~~s~~~---~~~---~~~l~~~Gl~~~dv~~~~~~~-~~~---~~a-l~~G~vDa~~~ 208 (341)
T 3un6_A 150 NNGDDYHFGIPHRYSTHY---LLL---EELRKQLKIKPGHFSYHEMSP-AEM---PAA-LSEHRITGYSV 208 (341)
T ss_dssp SSSSCEEEEESCSSSHHH---HHH---HHHHHHTTCCTTSEEEEECCG-GGH---HHH-HHTTSCSEEEE
T ss_pred HhCCCCEEEECCCCCHHH---HHH---HHHHHHcCCCHHHeEEEEcCh-HHH---HHH-HHcCCCCEEEe
Confidence 44 778998864322222 222 235677899988999988863 233 333 35789999875
No 197
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=62.21 E-value=12 Score=28.47 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
+-+++||++.. ... ..+.++ ...|+++|+.+++++++.+++.-|+..++ ++|+.||++.-
T Consensus 135 DL~Gk~i~~~~--~gs-~~~~~~---~~~l~~~G~~~~~v~~~~~~~~~~~~~al----~~G~vDa~~~~ 194 (346)
T 3qsl_A 135 DLKGRKIGVTA--PGS-STNMVV---NFFLAKHGLKASDVSFIGVGAGAGAVTAL----RSGQIDAISNT 194 (346)
T ss_dssp GGTTCEEEESS--TTS-HHHHHH---HHHHHHTTCCGGGSEEEECCSSHHHHHHH----HHTSCSEEEEE
T ss_pred HcCCCEEEECC--CCc-HHHHHH---HHHHHHcCCCHHHeEEEecCCcHHHHHHH----HcCCccEEEec
Confidence 44677888752 111 112222 34567899998899999887664544443 35789988763
No 198
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=59.61 E-value=20 Score=29.52 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=36.5
Q ss_pred CEEEEEEee-ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecc--cchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvAr-fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPG--AfELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||..+ .-.. ..+.+...+.|++.|+. +.++. +.+ .+|.=..+-..++..++|.||++|
T Consensus 41 ~~~liVtd~~~~~~--~g~~~~v~~~L~~~g~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 41 KRALVVTGKSSSKK--NGSLDDLKKLLDETEIS---YEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp SEEEEEEESSGGGT--SSHHHHHHHHHHHTTCE---EEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred CEEEEEECchHHhh--ccHHHHHHHHHHHcCCe---EEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 699999876 3222 02445556677777873 32322 333 333333334445667999999998
No 199
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=59.35 E-value=13 Score=26.73 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=29.8
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEeccc
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPGS 119 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~-~Gv~~e~I~vv~VPGA 119 (145)
+||.||...-+ --|+.|.+...+.|++ .|+ +++++++.-.
T Consensus 2 mkilii~~S~~-g~t~~la~~i~~~l~~~~g~---~v~~~~l~~~ 42 (198)
T 3b6i_A 2 AKVLVLYYSMY-GHIETMARAVAEGASKVDGA---EVVVKRVPET 42 (198)
T ss_dssp CEEEEEECCSS-SHHHHHHHHHHHHHHTSTTC---EEEEEECCCC
T ss_pred CeEEEEEeCCC-cHHHHHHHHHHHHHhhcCCC---EEEEEEcccc
Confidence 48888887743 4578888888888888 776 4777877654
No 200
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=59.22 E-value=32 Score=28.70 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=35.9
Q ss_pred CEEEEEEe-eecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc-----cchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVA-RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvA-rfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG-----AfELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||.. +.-.. ..+.+...+.|++.|+. +...+| .+|.=..+-..++..++|.||++|
T Consensus 44 ~r~liVtd~~~~~~--~g~~~~v~~~L~~~g~~-----~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 109 (407)
T 1vlj_A 44 RKVLFLYGGGSIKK--NGVYDQVVDSLKKHGIE-----WVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVG 109 (407)
T ss_dssp CEEEEEECSSHHHH--SSHHHHHHHHHHHTTCE-----EEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CeEEEEECchHHhh--ccHHHHHHHHHHHcCCe-----EEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 58988886 32121 02556667778877763 233455 233333333445667899999998
No 201
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=58.56 E-value=25 Score=28.30 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=36.1
Q ss_pred EEEEEEeeecHH-HHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 77 RFALVVARFNEL-VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 77 RIaIVvArfN~~-It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
|++||+-..-.. -..++.+...+.|+++|+. ++++..-..-+.--.++.++ ..++|.||++|
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~---~~~~~t~~~~~a~~~~~~~~-~~~~d~vvv~G 88 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYE---TSAYATEKIGDATLEAERAM-HENYDVLIAAG 88 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEE---EEEEECCSTTHHHHHHHHHT-TTTCSEEEEEE
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCe---EEEEEecCcchHHHHHHHHh-hcCCCEEEEEc
Confidence 688886443321 1234567778889988873 44443322224333344443 35799999998
No 202
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=58.26 E-value=12 Score=29.37 Aligned_cols=57 Identities=21% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+++||++....-. +.+ ....|+++|+..+++..+.++. +-+...| ++|++||++.
T Consensus 116 DLkGk~I~v~~gs~~----~~~---~~~~l~~~Gl~~~~v~~v~~~~----~~~~~al-~~G~vDa~~~ 172 (348)
T 3uif_A 116 DLKGKKIALHRGRPW----ELA---FSNLLQSEGLTFKDFKIVNVNP----QVGAAAL-ASGTVDGFFS 172 (348)
T ss_dssp GGTTSEEEECTTSTH----HHH---HHHHHHHTTCCGGGSEEECCCH----HHHHHHH-HHTSSSEEEE
T ss_pred HcCCCEEEecCCChH----HHH---HHHHHHHcCCCHHHeEEEECCH----HHHHHHH-HcCCCCEEEe
Confidence 457889988422222 222 2345678899888888776643 3333333 4689999764
No 203
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=56.34 E-value=27 Score=27.78 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=39.6
Q ss_pred CCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
-+|+.+|+-..- ..-..+..+...+.|+++|+. ++++..-..-+.--.++.+. .+||.||++|
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~---~~~~~t~~~~~a~~~~~~~~--~~~d~vv~~G 71 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPD---LHILHTKEQGDATKYCQEFA--SKVDLIIVFG 71 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSE---EEEEECCSTTHHHHHHHHHT--TTCSEEEEEE
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcCCe---EEEEEccCcchHHHHHHHhh--cCCCEEEEEc
Confidence 357777763321 001223456677888888874 56665555556656666664 3899999998
No 204
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=56.19 E-value=43 Score=28.76 Aligned_cols=57 Identities=9% Similarity=0.199 Sum_probs=35.9
Q ss_pred EEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHH-HHHHH---hhcCCCcEEEEee
Q 032216 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQL---GKSGKYTAVLCIG 142 (145)
Q Consensus 77 RIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPl-aak~L---a~s~~yDAVIaLG 142 (145)
|+.||..+. +.+.+.+...+.|++.|+. +.....+| |-|. .+.++ ++. ++|.||++|
T Consensus 93 rvlIVtd~~---~~~~~~~~v~~~L~~~gi~---~~~~~~~g--e~~~~~v~~~~~~~~~-~~D~IIAvG 153 (450)
T 1ta9_A 93 SAVVLADQN---VWNICANKIVDSLSQNGMT---VTKLVFGG--EASLVELDKLRKQCPD-DTQVIIGVG 153 (450)
T ss_dssp EEEEEEEHH---HHHHTHHHHHHHHHHTTCE---EEEEEECS--CCCHHHHHHHHTTSCT-TCCEEEEEE
T ss_pred EEEEEECcc---HHHHHHHHHHHHHHHCCCe---EEEEeeCC--CCCHHHHHHHHHHHhh-CCCEEEEeC
Confidence 898888653 3334677778888888874 22234556 3222 23332 345 899999998
No 205
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=55.59 E-value=21 Score=26.97 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 71 ~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+.++.||++... ...+.++ ...|+++|+..+++..+..+ .+-+.+. +.+|+.||++.
T Consensus 101 ~dL~Gk~i~~~~g----s~~~~~l---~~~l~~~Gl~~~~v~~~~~~----~~~~~~a-l~~G~vDa~~~ 158 (308)
T 2x26_A 101 ADLKGHKVAFQKG----SSSHNLL---LRALRQAGLKFTDIQPTYLT----PADARAA-FQQGNVDAWAI 158 (308)
T ss_dssp GGGTTSEEEECTT----SHHHHHH---HHHHHHTTCCGGGSEEEECC----HHHHHHH-HHTTSSSEEEE
T ss_pred HHcCCCEEeeeCC----CcHHHHH---HHHHHHcCCCHHHeEEEecC----hHHHHHH-HHcCCCCEEEe
Confidence 3456789987321 1222333 34567789987777665544 2233333 45789999875
No 206
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=55.34 E-value=47 Score=23.87 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=37.0
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
..||.||+..-+.. |+.|.+...+.|.+.|+ +++++.+.-..+.--....+ .+||+||.
T Consensus 4 ~~kv~IvY~S~~Gn-T~~iA~~ia~~l~~~g~---~v~~~~~~~~~~~~~~~~~~---~~~d~ii~ 62 (159)
T 3fni_A 4 ETSIGVFYVSEYGY-SDRLAQAIINGITKTGV---GVDVVDLGAAVDLQELRELV---GRCTGLVI 62 (159)
T ss_dssp CCEEEEEECTTSTT-HHHHHHHHHHHHHHTTC---EEEEEESSSCCCHHHHHHHH---HTEEEEEE
T ss_pred CCEEEEEEECCChH-HHHHHHHHHHHHHHCCC---eEEEEECcCcCCHHHHHHHH---HhCCEEEE
Confidence 35899998765533 66777777788888887 36777776542332223333 36887653
No 207
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=55.33 E-value=14 Score=31.15 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=33.5
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHH--HhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ--LGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~--La~s~~yDAVIaLG 142 (145)
.|+.||..+.=.. .+.+...+.|++ |+. +....++|-=....+-+. .++..++|.||++|
T Consensus 53 ~r~liVtd~~~~~---~~~~~v~~~L~~-g~~---~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 114 (387)
T 3uhj_A 53 KRALVLIDRVLFD---ALSERIGKSCGD-SLD---IRFERFGGECCTSEIERVRKVAIEHGSDILVGVG 114 (387)
T ss_dssp SEEEEEECTTTHH---HHHHHC-------CCE---EEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CEEEEEECchHHH---HHHHHHHHHHHc-CCC---eEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeC
Confidence 6899988765443 366777778888 864 333456665444433322 23456799999998
No 208
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=55.04 E-value=17 Score=27.89 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=47.5
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+..|..|...+. -....|...|++.+.+-+++....-|.=.++.+.++++.|.+||+
T Consensus 74 ~~r~vlwI~Pp~~---------l~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~ 131 (161)
T 1oft_A 74 DARWLTLIAPPAS---------LTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 131 (161)
T ss_dssp SSSEEEEESCCTT---------SCHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cCccEEEECCCCC---------CCHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEE
Confidence 3456777766652 134567789999999999999999999999999999999999997
No 209
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=54.56 E-value=11 Score=30.37 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=22.5
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCC
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVK 107 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~ 107 (145)
+||+||.-...... ....+...+.|+++|+.
T Consensus 5 ~ki~iI~n~~~~~~-~~~~~~l~~~L~~~g~~ 35 (307)
T 1u0t_A 5 RSVLLVVHTGRDEA-TETARRVEKVLGDNKIA 35 (307)
T ss_dssp CEEEEEESSSGGGG-SHHHHHHHHHHHTTTCE
T ss_pred CEEEEEEeCCCHHH-HHHHHHHHHHHHHCCCE
Confidence 47888876655544 34678888999999873
No 210
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=53.86 E-value=41 Score=28.36 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=39.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH------HHHHHHhhc--CCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG------VVAQQLGKS--GKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP------laak~La~s--~~yDAVIaLG 142 (145)
.|+.||..+.-.. +.+...+.|++.|+. +.++.+|+.=+=| -+++.+.+. .+.|.||++|
T Consensus 44 ~rvlIVtd~~v~~----~~~~v~~~L~~~g~~---~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavG 111 (368)
T 3qbe_A 44 HKVAVVHQPGLAE----TAEEIRKRLAGKGVD---AHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLG 111 (368)
T ss_dssp SEEEEEECGGGHH----HHHHHHHHHHHTTCE---EEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECccHHH----HHHHHHHHHHhcCCc---ceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEEC
Confidence 5899988775443 457778888888873 5667777753322 233334333 3689999998
No 211
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=53.45 E-value=12 Score=21.72 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=16.2
Q ss_pred EeeecHHHHHHHHHHHHHHHHH
Q 032216 82 VARFNELVTKLLLEGALETFKK 103 (145)
Q Consensus 82 vArfN~~It~~LleGA~~~L~~ 103 (145)
++||.+.-.+.|++.|++++..
T Consensus 6 vtrfdekqieelldncietfva 27 (31)
T 4h62_V 6 VTRFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp ----CHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999864
No 212
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=53.09 E-value=17 Score=30.02 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 88 LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 88 ~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.++..+++-+++.|+..|+ .++..|| |-=-.+..|++.+..|+|+.
T Consensus 123 ~vt~~~~~~~~~lL~~~gi-----~~i~ap~--EADa~ia~La~~g~~~~I~S 168 (346)
T 2izo_A 123 RLSNIMVEESKKLLRAMGI-----PIVQAPS--EGEAEAAYLNKLGLSWAAAS 168 (346)
T ss_dssp --CHHHHHHHHHHHHHHTC-----CEEECSS--CHHHHHHHHHHTTSSSEEEC
T ss_pred CCCHHHHHHHHHHHHHCCC-----CEEEcCC--cHHHHHHHHHhCCCeEEEEC
Confidence 4555788999999999997 4788999 88888888998877888863
No 213
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=51.37 E-value=16 Score=29.86 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 89 It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
++..+++-+++.|+..|+ ..+..|| |-=-.+..|++.+..|+|+.
T Consensus 127 vt~~~~~~~~~lL~~~gi-----~~i~apg--EAD~~ia~La~~g~~~~I~S 171 (326)
T 1a76_A 127 LTPKMVENCKYLLSLMGI-----PYVEAPS--EGEAQASYMAKKGDVWAVVS 171 (326)
T ss_dssp SCHHHHHHHHHHHHHHTC-----CEEECSS--CHHHHHHHHHHTTSSSEEEC
T ss_pred CCHHHHHHHHHHHHHcCC-----CeEECCc--cHHHHHHHHHHCCCEEEEec
Confidence 445688899999999997 4788999 88888889998887888864
No 214
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=51.35 E-value=14 Score=27.63 Aligned_cols=76 Identities=18% Similarity=0.065 Sum_probs=42.6
Q ss_pred hhhhhhccccCCC-CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHH---HHHHhhcCCCc
Q 032216 61 EAVRHLTGFLTKN-EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGKSGKYT 136 (145)
Q Consensus 61 ~a~~~~~g~l~~~-~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPla---ak~La~s~~yD 136 (145)
.|.+++-...+.+ ...||+++...-.......-.+|+.+.|+++|+. +.. ...|.++.--+ ++.+++..++|
T Consensus 121 ~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (304)
T 3o1i_D 121 EAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIH---IVD-SFWADNDKELQRNLVQRVIDMGNID 196 (304)
T ss_dssp HHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEE---EEE-CCCCCSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCE---EEE-eecCCCcHHHHHHHHHHHHcCCCCC
Confidence 4455554333222 2568999987765555555679999999988764 111 23565554322 23334667899
Q ss_pred EEEEe
Q 032216 137 AVLCI 141 (145)
Q Consensus 137 AVIaL 141 (145)
| ||.
T Consensus 197 a-i~~ 200 (304)
T 3o1i_D 197 Y-IVG 200 (304)
T ss_dssp E-EEE
T ss_pred E-EEe
Confidence 9 654
No 215
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=51.22 E-value=39 Score=28.37 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=43.6
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeE-EEEe---cccchHHHHHHHHhhc-CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENID-VVWV---PGSFEIGVVAQQLGKS-GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~-vv~V---PGAfELPlaak~La~s-~~yDAVIaLG 142 (145)
-.+||||.+ +++..+...+...++++++|+. +. ...+ ++.-+.--.++++.+. .+.+.||..|
T Consensus 197 w~~V~li~~--dd~~G~~~~~~~~~~~~~~Gi~---v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~ 264 (496)
T 3ks9_A 197 WTYVSAVHT--EGNYGESGMDAFKELAAQEGLS---IAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFC 264 (496)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCE---EEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEEC
T ss_pred CcEEEEEEe--ccHHHHHHHHHHHHHHHHcCce---EEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEec
Confidence 459999986 6667788889999999999984 22 2234 4556666667777653 3666666654
No 216
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=51.17 E-value=14 Score=29.82 Aligned_cols=66 Identities=8% Similarity=-0.154 Sum_probs=40.3
Q ss_pred CCCEEEEEEeeecHH--HHHHHHHHHHHHHHHCCCCCCCeEEEEecc----cch-HHHHHHHHh-hcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNEL--VTKLLLEGALETFKKYSVKEENIDVVWVPG----SFE-IGVVAQQLG-KSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~--It~~LleGA~~~L~~~Gv~~e~I~vv~VPG----AfE-LPlaak~La-~s~~yDAVIaLG 142 (145)
...|||++...-... ....-.+|..+.|+++|+.. .++..+- .++ .--+++.++ +..++|||+|..
T Consensus 138 G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~n 211 (412)
T 4fe7_A 138 GVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRG---VVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVT 211 (412)
T ss_dssp TCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCC---EEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEEESS
T ss_pred CCceEEEecccccccccHHHHHHHHHHHHHHHcCCCc---cccccccccccchhhHHHHHHHHHHhCCCCeEEEEEe
Confidence 346999998765432 34556699999999999852 2222211 222 222334444 456899999863
No 217
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=50.78 E-value=86 Score=24.36 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=32.8
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccc---h--------HHHHHHH-HhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF---E--------IGVVAQQ-LGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAf---E--------LPlaak~-La~s~~yDAVIaLG 142 (145)
..||||+.. |-..+++.+ .+.|+++|+. +....-.|-. | +--++++ +....+.|||| ||
T Consensus 117 ~~rvglltp-y~~~~~~~~----~~~l~~~Gie---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaiv-L~ 187 (240)
T 3ixl_A 117 VRRVALATA-YIDDVNERL----AAFLAEESLV---PTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGIL-LS 187 (240)
T ss_dssp CSEEEEEES-SCHHHHHHH----HHHHHHTTCE---EEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEE-EE
T ss_pred CCEEEEEeC-ChHHHHHHH----HHHHHHCCCE---EeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEE-Ee
Confidence 469999965 655544433 5667778873 2222222211 2 2223445 32556889877 55
Q ss_pred e
Q 032216 143 A 143 (145)
Q Consensus 143 ~ 143 (145)
|
T Consensus 188 C 188 (240)
T 3ixl_A 188 S 188 (240)
T ss_dssp C
T ss_pred C
Confidence 6
No 218
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=50.68 E-value=29 Score=27.53 Aligned_cols=64 Identities=6% Similarity=0.005 Sum_probs=45.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
...||+|+.. |....+.+.+...+.+++.|+. .+.... -+|.-+.--.++++.+ .+.|+|+..|
T Consensus 163 ~~~~vail~~--~~~~g~~~~~~~~~~~~~~g~~--vv~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~ 227 (419)
T 3h5l_A 163 PNNKIAIITG--PGIYSVNIANAIRDGAGEYGYD--VSLFETVAIPVSDWGPTLAKLRA-DPPAVIVVTH 227 (419)
T ss_dssp SSSEEEEEEC--SSHHHHHHHHHHHHHGGGGTCE--EEEEEECCSSCSCCHHHHHHHHH-SCCSEEEECC
T ss_pred CCCEEEEEEc--CcchhHHHHHHHHHHHHHcCCe--EEEEecCCCCCccHHHHHHHHHh-cCCCEEEEcc
Confidence 3469999986 4677788999999999999974 122222 3576676666777653 4789888764
No 219
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=50.64 E-value=62 Score=24.20 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=41.4
Q ss_pred CEEEEEEeeec-----HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 76 LRFALVVARFN-----ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 76 lRIaIVvArfN-----~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
-||.||.+.=+ .-.++.|.+.+.+.+++.|. +++++++--.+++--..+++. ..|+||-
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~---~v~~~dL~~~~d~~~~~~~l~---~AD~iV~ 76 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGH---DVRIVRADSDYDVKAEVQNFL---WADVVIW 76 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTC---EEEEEESSSCCCHHHHHHHHH---HCSEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCC---EEEEEeCCccccHHHHHHHHH---hCCEEEE
Confidence 48888876433 26888999999999998875 477777765566655555554 5787763
No 220
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=50.03 E-value=70 Score=24.41 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=42.4
Q ss_pred CCCEEEEEEeee--cHHHHHHHHHHHHHHHHHCCC--CCCCeEEEEecccchHH---HHHHHHhhcCCCcEEEE
Q 032216 74 EGLRFALVVARF--NELVTKLLLEGALETFKKYSV--KEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 74 ~~lRIaIVvArf--N~~It~~LleGA~~~L~~~Gv--~~e~I~vv~VPGAfELP---laak~La~s~~yDAVIa 140 (145)
+..|||++...= ....-..+.+|+...+++.|. .-..++++..--..+-. -++++|.+.++.|+||.
T Consensus 5 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG 78 (368)
T 4eyg_A 5 DTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAG 78 (368)
T ss_dssp CEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEC
Confidence 457899988742 345566788888888887663 22345555444433333 34566776788999884
No 221
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=49.44 E-value=61 Score=26.37 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=29.9
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccc-----hHHHHHHHHhhcCCC---cEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-----EIGVVAQQLGKSGKY---TAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAf-----ELPlaak~La~s~~y---DAVIaLG 142 (145)
.|+.||..+ .+.+...+...+.| +.| . ++++..|+.= |-=..+-..++..++ |.||++|
T Consensus 32 ~~~liVtd~---~~~~~~~~~v~~~L-~~g-~---~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavG 98 (354)
T 1xah_A 32 DQSFLLIDE---YVNQYFANKFDDIL-SYE-N---VHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVG 98 (354)
T ss_dssp SCEEEEEEH---HHHHHHHHHHC--------C---EEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEE
T ss_pred CeEEEEECC---cHHHHHHHHHHHHH-hcC-C---eEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEEC
Confidence 488888764 33334455556666 555 2 5555666543 222222233445556 9999998
No 222
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=48.80 E-value=18 Score=29.79 Aligned_cols=61 Identities=7% Similarity=0.073 Sum_probs=36.3
Q ss_pred CEEEEEEeeecHHHHHH-HHHHHHHHHHHCCCCCCCeEEEE-ecc--cchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKL-LLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~-LleGA~~~L~~~Gv~~e~I~vv~-VPG--AfELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||..+ .+.+. +.+...+.|++.|+. +.++. +++ .+|.=..+-..++..++|.||++|
T Consensus 32 ~~~livtd~---~~~~~g~~~~v~~~L~~~g~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 96 (386)
T 1rrm_A 32 QKALIVTDK---TLVQCGVVAKVTDKMDAAGLA---WAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIG 96 (386)
T ss_dssp CEEEEECBH---HHHHTTHHHHHHHHHHHTTCE---EEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CEEEEEECc---chhhchHHHHHHHHHHHcCCe---EEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 488887753 33333 677778888888863 22222 322 233223333344567899999998
No 223
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=48.20 E-value=67 Score=24.59 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCCCEEEEEEee--ecHHHHHHHHHHHHHHHHHCC--CCCCCeEEEEecccchHHH---HHHHHhhcCCCcEEEEe
Q 032216 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKKYS--VKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 73 ~~~lRIaIVvAr--fN~~It~~LleGA~~~L~~~G--v~~e~I~vv~VPGAfELPl---aak~La~s~~yDAVIaL 141 (145)
.+..+||++... .....-..+++|+...+++.| +.-..++++..--..+--. .+++|.++++.|+||..
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 456899999874 234556678889988888886 1112345554443333332 33445555689999863
No 224
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=48.09 E-value=23 Score=29.21 Aligned_cols=57 Identities=9% Similarity=0.144 Sum_probs=35.8
Q ss_pred CCCCCEEEEEE-eeecHHHHHHHHHHHHHHHHHCCCCCC-CeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVV-ARFNELVTKLLLEGALETFKKYSVKEE-NIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVv-ArfN~~It~~LleGA~~~L~~~Gv~~e-~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+++|||+.. ..-+ +.++ ...|+++|+.++ +++++.+|.. ++ ++.| ++|+.||++.
T Consensus 152 dLkGk~iav~~~gs~~----~~~l---~~~L~~~Gl~~~~dv~~v~~~~~-~~---~~aL-~~G~vDa~~~ 210 (417)
T 2g29_A 152 KVTDPKVAMTFPGGTH----DMWI---RYWLAAGGMEPGKDFSTIVVPPA-QM---VANV-KVNAMESFCV 210 (417)
T ss_dssp TSSSCEEEESSTTSHH----HHHH---HHHHHHTTCCBTTTBEEEECCGG-GH---HHHH-HTTSCSEEEE
T ss_pred hcCCCEEEEeCCCCHH----HHHH---HHHHHHcCCCCCCceEEEECCHH-HH---HHHH-HcCCCCEEEe
Confidence 34578998763 2222 2233 345777899876 8999988742 33 3333 4688999865
No 225
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=47.37 E-value=15 Score=27.39 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc-cc---hH-HHHHHHHhhcCCCcEEEEe
Q 032216 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPG-SF---EI-GVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG-Af---EL-Plaak~La~s~~yDAVIaL 141 (145)
...||+++...-+ ......-.+|..+.|++++. +.+.+ .| +- -.+.+.|.+..++|||+|.
T Consensus 122 G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 188 (276)
T 3jy6_A 122 GYQHVVVLTSELELSRTRQERYRGILAAAQDVDV-------LEVSESSYNHSEVHQRLTQLITQNDQKTVAFAL 188 (276)
T ss_dssp TCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-------EEECSSSCCHHHHHHHHHHHHHSSSSCEEEEES
T ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCc-------EEEeccccCCcHHHHHHHHHHhcCCCCcEEEEe
Confidence 4469999999876 44555667999999888741 22332 11 21 1223334345789999985
No 226
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=47.26 E-value=43 Score=29.00 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 92 ~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
...+.-++.|+++||+ .++-+||...+|+.-. |.+.++..-|.
T Consensus 12 ~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~da-l~~~~~i~~i~ 54 (578)
T 3lq1_A 12 DYLAAFIEELVQAGVK----EAIISPGSRSTPLALM-MAEHPILKIYV 54 (578)
T ss_dssp HHHHHHHHHHHHTTCC----EEEECCCTTTHHHHHH-HHHCSSCEEEE
T ss_pred HHHHHHHHHHHHcCCC----EEEECCCCccHHHHHH-HHhCCCceEEE
Confidence 3455567889999997 7899999999998753 33334444443
No 227
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=46.75 E-value=22 Score=29.59 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 90 t~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
+..+++-+.+.|+..|+ ..+..|| |-=-.+..|++.+..|+|+
T Consensus 133 t~~q~~~~~~lL~~~gi-----p~i~ap~--EADd~ia~La~~g~v~~i~ 175 (341)
T 3q8k_A 133 TKQHNDECKHLLSLMGI-----PYLDAPS--EAEASCAALVKAGKVYAAA 175 (341)
T ss_dssp CHHHHHHHHHHHHHHTC-----CEEECSS--CHHHHHHHHHHTTSSSEEE
T ss_pred CHHHHHHHHHHHHHcCC-----CEEECCc--cHHHHHHHHHhcCCeEEEE
Confidence 35688899999999997 4778998 9888888999888888776
No 228
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=46.16 E-value=32 Score=24.67 Aligned_cols=73 Identities=19% Similarity=0.097 Sum_probs=40.8
Q ss_pred hhhhhhhcccchhhhh-----hhhhccccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch
Q 032216 47 IAIERKERLSFVQTEA-----VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE 121 (145)
Q Consensus 47 ~~~~~~~~~~~~~~~a-----~~~~~g~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE 121 (145)
..-+|...-.|+.+-. +-...+.+.+..+ |||++....+....+ +. ++.++.++..-
T Consensus 74 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~dL~g-~igv~~g~~~~~~l~-----------~~-----~~~~~~~~~~~- 135 (232)
T 3i6v_A 74 ITDERDEVIDFTQNYIPPTASSYVATSDGADLSG-IVAAQTATIQAGYIA-----------ES-----GATLVEFATPE- 135 (232)
T ss_dssp CCHHHHTTSEEEEEEECCCEEEEEESSTTCCTTS-EEEEETTSHHHHHHH-----------HS-----SSEEEEESSHH-
T ss_pred CCHHHHhhcCcccccccCCeEEEEECCChHHhCC-CEEEecCchHHHHHH-----------hc-----CCeEEEeCCHH-
Confidence 3445665556665421 1111233556678 999987765544222 22 25677777543
Q ss_pred HHHHHHHHhhcCCCcEEEE
Q 032216 122 IGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 122 LPlaak~La~s~~yDAVIa 140 (145)
-+++.| ..|++|+++.
T Consensus 136 --~~~~~L-~~GrvDa~i~ 151 (232)
T 3i6v_A 136 --ETIAAV-RNGEADAVFA 151 (232)
T ss_dssp --HHHHHH-HTTSSSEEEE
T ss_pred --HHHHHH-HcCCcCEEEE
Confidence 334444 4789999886
No 229
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=45.84 E-value=37 Score=25.68 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=27.1
Q ss_pred CEEEEEEeeec-HHHHHHHHHHHHHHHHHC-CCCCCCeEEEE
Q 032216 76 LRFALVVARFN-ELVTKLLLEGALETFKKY-SVKEENIDVVW 115 (145)
Q Consensus 76 lRIaIVvArfN-~~It~~LleGA~~~L~~~-Gv~~e~I~vv~ 115 (145)
+||.||.+.-+ .-.|..|.+.+.+.|++. |.+ ++++.
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~---v~~~d 40 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVD---ISFRT 40 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCE---EEEEC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCe---EEEEE
Confidence 48888887755 356888888888888877 763 55554
No 230
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=45.70 E-value=56 Score=23.32 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=26.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG 118 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG 118 (145)
|||.|+...-+.. |+.|.+...+.|.+.|+. ++++.+.-
T Consensus 1 Mkv~IvY~S~tGn-T~~~A~~ia~~l~~~g~~---v~~~~~~~ 39 (161)
T 3hly_A 1 MSVLIGYLSDYGY-SDRLSQAIGRGLVKTGVA---VEMVDLRA 39 (161)
T ss_dssp -CEEEEECTTSTT-HHHHHHHHHHHHHHTTCC---EEEEETTT
T ss_pred CEEEEEEECCChH-HHHHHHHHHHHHHhCCCe---EEEEECCC
Confidence 5788887655432 667777778888888873 66777654
No 231
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=45.43 E-value=23 Score=29.81 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 89 It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
|+..|++-+++.|+..|+ ..+..|| |-=..+..|++.+..|+|+.
T Consensus 141 vt~~~~~~i~~lL~~~GI-----p~i~apg--EADaqiA~La~~g~~~~I~S 185 (363)
T 3ory_A 141 LTEEMVRDAKSLLDAMGI-----PWVQAPA--EGEAQAAYIVKKGDAYASAS 185 (363)
T ss_dssp CCHHHHHHHHHHHHHHTC-----CEEECSS--CHHHHHHHHHHTTSCSEEEC
T ss_pred CCHHHHHHHHHHHHHCCC-----CEEEeCc--cHHHHHHHHHHCCCeEEEEC
Confidence 334578889999999997 4788999 65556677788788888874
No 232
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=45.37 E-value=7.2 Score=32.26 Aligned_cols=64 Identities=8% Similarity=0.048 Sum_probs=35.3
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecc--cchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPG--AfELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||..+.-...+..+.+...+.|++.|+. +.++. |.+ .+|.=..+-..++..++|.||++|
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIE---VAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCE---EEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCe---EEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 58888876532221001456667778888863 22221 222 233333333345667899999998
No 233
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=45.28 E-value=19 Score=28.15 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=28.3
Q ss_pred HHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 99 ETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 99 ~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
+.|.+..+....|....+|=+|+-- -.+..+.+..++|.||++|.
T Consensus 24 ~~L~~~~~~~~~i~~~~lPv~~~~~~~~l~~~~~~~~pd~vi~vG~ 69 (208)
T 1x10_A 24 KDLDGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGL 69 (208)
T ss_dssp HHHTTCEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHhhccCCCCeEEEEEEEeeEHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 3333333333357777889888543 24455555568999999995
No 234
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=44.62 E-value=1.1e+02 Score=23.89 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=35.8
Q ss_pred CCCEEEEEEeee--cHHHHHHHHHHHHHHHHHC----CCCCCCeEEEEecccchHH---HHHHHHhhcCCCcEEEEe
Q 032216 74 EGLRFALVVARF--NELVTKLLLEGALETFKKY----SVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArf--N~~It~~LleGA~~~L~~~----Gv~~e~I~vv~VPGAfELP---laak~La~s~~yDAVIaL 141 (145)
+..+||++...- +...-..+++|+...+++. |+.-..++++..-...+-- -++++|.++.++|+||..
T Consensus 6 ~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 6 ERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp --CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 346888887642 2344555667766666654 1211234454443322222 234556656788888764
No 235
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=44.61 E-value=96 Score=27.12 Aligned_cols=61 Identities=8% Similarity=0.074 Sum_probs=49.4
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCC-cEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKY-TAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~y-DAVIaLG 142 (145)
..+|+||.+.=-+. .-.+.|.+.|+..|+. .-+.|-|+.-.|--+..+++ ...+ +.|||.+
T Consensus 265 ~~~V~Ii~gs~SD~---~~~~~a~~~l~~~gi~----~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~A 329 (425)
T 2h31_A 265 QCRVVVLMGSTSDL---GHCEKIKKACGNFGIP----CELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVA 329 (425)
T ss_dssp CCEEEEEESCGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCeEEEEecCcccH---HHHHHHHHHHHHcCCc----eEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEc
Confidence 35899999988877 5668899999999996 45789999999988888765 3457 6888763
No 236
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=44.12 E-value=51 Score=24.10 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=26.7
Q ss_pred CEEEEEEeeec-HHHHHHHHHHHHHH-HHHCCCCCCCeEEEEe
Q 032216 76 LRFALVVARFN-ELVTKLLLEGALET-FKKYSVKEENIDVVWV 116 (145)
Q Consensus 76 lRIaIVvArfN-~~It~~LleGA~~~-L~~~Gv~~e~I~vv~V 116 (145)
+||.||.+.-+ .-.++.|.+...+. |++.|. +++++.+
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~---~v~~~dl 42 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDS---QGRHIHV 42 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSE---EEEEEEG
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCC---eEEEEEc
Confidence 47888887643 44577787777787 888776 3666665
No 237
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=43.64 E-value=67 Score=25.13 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=38.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCC--------Ce----------EEE-E-ecccchHHHHHHHHhhcCC
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEE--------NI----------DVV-W-VPGSFEIGVVAQQLGKSGK 134 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e--------~I----------~vv-~-VPGAfELPlaak~La~s~~ 134 (145)
-.||++|.. |++..+.+.+...+.+++.|+... .+ +.+ . -++.-++--.++++. ..+
T Consensus 139 w~~v~ii~~--d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~-~~~ 215 (384)
T 3qek_A 139 WNHVILIVS--DDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAK-ELE 215 (384)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHH-TSS
T ss_pred CeEEEEEEE--cCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHH-hcC
Confidence 469999997 566677788888899999886310 00 111 1 246666666667764 457
Q ss_pred CcEEEEee
Q 032216 135 YTAVLCIG 142 (145)
Q Consensus 135 yDAVIaLG 142 (145)
.|+||..+
T Consensus 216 ~~vii~~~ 223 (384)
T 3qek_A 216 ARVIILSA 223 (384)
T ss_dssp CCEEEEEC
T ss_pred CcEEEEEC
Confidence 88888755
No 238
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=43.57 E-value=78 Score=24.76 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=44.4
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaL 141 (145)
...||+|+... ......+.++..+.+++.|.. .+....+ +|.-+.--.++++.+ .+.|+|+..
T Consensus 138 g~k~vaii~~~--~~~g~~~~~~~~~~~~~~g~~--vv~~~~~~~~~~d~~~~l~~i~~-~~pd~v~~~ 201 (371)
T 4f06_A 138 GATKVAIAVSD--YGPGIDAETAFKKTFEAEGGK--VVEAVRMPLSTTDFGPIMQRIKN-SGADMIFTF 201 (371)
T ss_dssp TCCEEEEEEES--SHHHHHHHHHHHHHHHHTTCE--EEEEEEECTTCCCCHHHHHHHHH-HTCSEEEEE
T ss_pred CceEEEEEcCC--cccchhHHHHHHHHHHhcCCc--eEEEEecCcccccHHHHHHHHHh-cCCCEEEEE
Confidence 35699999864 456677889999999999984 2333334 577776666666653 478988764
No 239
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=43.54 E-value=9.9 Score=31.53 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=33.2
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc-----cchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG-----AfELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||..+.- ..+.+...+.|++.++ .++ +| .+|.=..+...++..++|.||++|
T Consensus 35 ~r~liVtd~~~----~~~~~~v~~~L~~~~~-----~v~--~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 95 (353)
T 3hl0_A 35 SRALVLSTPQQ----KGDAEALASRLGRLAA-----GVF--SEAAMHTPVEVTKTAVEAYRAAGADCVVSLG 95 (353)
T ss_dssp CCEEEECCGGG----HHHHHHHHHHHGGGEE-----EEE--CCCCTTCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CEEEEEecCch----hhHHHHHHHHHhhCCc-----EEe--cCcCCCCcHHHHHHHHHHHhccCCCEEEEeC
Confidence 58888887652 2355666666765432 222 33 233323333345667899999998
No 240
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=42.21 E-value=21 Score=28.32 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=24.2
Q ss_pred CCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 109 ENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 109 e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
..|....+|=+|+-- -.+..+.+..++|.||++|.
T Consensus 35 ~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~ 70 (220)
T 1a2z_A 35 AMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGL 70 (220)
T ss_dssp EEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eEEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 357777889888642 23344455568999999995
No 241
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=41.66 E-value=95 Score=24.94 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=39.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+|+.|+....+. -|+.|.+...+.|.+.|+ .++++.+.- .+++-..+.+. .||+||-
T Consensus 256 ~~kv~iiy~S~~G-nT~~la~~i~~~l~~~g~---~v~~~~l~~-~~~~~~~~~l~---~~D~iii 313 (414)
T 2q9u_A 256 QKKVTVVLDSMYG-TTHRMALALLDGARSTGC---ETVLLEMTS-SDITKVALHTY---DSGAVAF 313 (414)
T ss_dssp CSEEEEEECCSSS-HHHHHHHHHHHHHHHTTC---EEEEEEGGG-CCHHHHHHHHH---TCSEEEE
T ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhCCC---eEEEEEcCc-CCHHHHHHHHH---hCCEEEE
Confidence 4699999988764 377888888888888786 366676643 34443444443 7888774
No 242
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=47.71 E-value=5.5 Score=30.18 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=22.8
Q ss_pred CCCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCe
Q 032216 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENI 111 (145)
Q Consensus 74 ~~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I 111 (145)
+.|||.+|.+.=. .-.+..|.+.+.+.+.+ |+.-+.+
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i 42 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPL 42 (199)
Confidence 4578888776543 34566677777777665 6643333
No 243
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=41.46 E-value=41 Score=28.96 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
+--.+.|+++||+ .++-+||...+|+.-. |.+.++..-|.
T Consensus 7 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a-l~~~~~i~~i~ 46 (568)
T 2wvg_A 7 TYLAERLVQIGLK----HHFAVAGDYNLVLLDN-LLLNKNMEQVY 46 (568)
T ss_dssp HHHHHHHHHTTCS----EEEECCCTTTHHHHHH-HHTCTTSEEEE
T ss_pred HHHHHHHHHcCCC----EEEeCCCCccHHHHHH-HhccCCceEec
Confidence 4457889999996 7899999999998755 44444455444
No 244
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=41.34 E-value=39 Score=28.99 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
+--.+.|+++||+ .++-+||...+|+.-. |.+.++..-|.
T Consensus 7 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~da-l~~~~~i~~i~ 46 (549)
T 3eya_A 7 AYIAKTLESAGVK----RIWGVTGDSLNGLSDS-LNRMGTIEWMS 46 (549)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH-HHHHCSSEEEE
T ss_pred HHHHHHHHHCCCC----EEEEcCCCchHHHHHH-HHhcCCCeEEE
Confidence 4456889999997 7899999999999744 34444455443
No 245
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=41.25 E-value=35 Score=26.64 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=43.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecccchHHHHHHHHhhcC----CCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSG----KYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPGAfELPlaak~La~s~----~yDAVIaL 141 (145)
+.||+|+.. |......+.++..+.++++|+. -+.... -+|.-+.--.++++.+.+ ..|+|+..
T Consensus 141 ~~~v~ii~~--~~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~l~~i~~~~~~~~~~d~v~~~ 208 (374)
T 3n0x_A 141 GVTIATLAQ--DYAFGRDGVAAFKEALAKTGAT--LATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVI 208 (374)
T ss_dssp TEEEEEEEE--SSHHHHHHHHHHHHHHTTTTCE--EEEEEEECTTCCCCHHHHHHHHHHHTTCSSEEEEEEC
T ss_pred CCEEEEEeC--CchHHHHHHHHHHHHHHHcCCE--EeeeecCCCCCccHHHHHHHHHhcCCCCCCCCEEEEE
Confidence 359999975 5567788899999999999974 222333 357777766677766543 28888765
No 246
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=41.24 E-value=14 Score=27.34 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++.|.+.+.+.|+. ++++++.-. ..++|+ ..+.||.|++.+++
T Consensus 79 ~~~~~~a~~~~~~~~~~-~~~~~~~~d-~~~~~~------~~~~fD~v~~~~~l 124 (257)
T 3f4k_A 79 PDFIEIFNENAVKANCA-DRVKGITGS-MDNLPF------QNEELDLIWSEGAI 124 (257)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEEECC-TTSCSS------CTTCEEEEEEESCS
T ss_pred HHHHHHHHHHHHHcCCC-CceEEEECC-hhhCCC------CCCCEEEEEecChH
Confidence 34778888888888885 346554333 245552 24689999887754
No 247
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=41.11 E-value=8.4 Score=30.49 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 74 ~~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
..+||+||.+.=+ .-.+..|.+.+.+.+++.|+. ++++++
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~e---ve~idL 73 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAE---VKVFDP 73 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCE---EEECCC
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCE---EEEEEh
Confidence 4579988887643 466778888888888887874 555554
No 248
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=40.66 E-value=35 Score=26.76 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=37.1
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
+.+.+++||++. ... .+.++ ...|+++|+.++++..+.++.. . +.. +.+++.||++..
T Consensus 106 ~~dLkGK~ig~~-~~~----~~~~l---~~~L~~~Gl~~~dv~~v~~~~~--~---~~a-l~~G~vDa~~~~ 163 (342)
T 4esw_A 106 FQSLKGKRIGYV-GEF----GKIQV---DELTKHYGMTPDDYVAVRCGMN--V---AKY-ILEGTIDCGIGI 163 (342)
T ss_dssp GGGGTTCEEEES-SSH----HHHHH---HHHHGGGTCCGGGSEEEECGGG--H---HHH-HHHTSSSEEEEE
T ss_pred HHHhCCCEEEec-CCc----hHHHH---HHHHHHcCCChhheEEecCCHH--H---HHH-HHcCCCCEEEEe
Confidence 335678899863 222 23333 3457789999999988887632 2 222 346899998764
No 249
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=40.46 E-value=78 Score=20.92 Aligned_cols=47 Identities=9% Similarity=-0.018 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHH-HhhcCCCcEEEE
Q 032216 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ-LGKSGKYTAVLC 140 (145)
Q Consensus 90 t~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~-La~s~~yDAVIa 140 (145)
.+..++.+.+.+.+.|+. +++..-+.| +..-.+-. .++..++|-||.
T Consensus 67 ~~~~l~~~~~~~~~~g~~--~~~~~~~~g--~~~~~I~~~~a~~~~~dliV~ 114 (146)
T 3s3t_A 67 AKDAMRQRQQFVATTSAP--NLKTEISYG--IPKHTIEDYAKQHPEIDLIVL 114 (146)
T ss_dssp HHHHHHHHHHHHTTSSCC--CCEEEEEEE--CHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCc--ceEEEEecC--ChHHHHHHHHHhhcCCCEEEE
Confidence 344556666677777772 355555667 34455555 777789998774
No 250
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=40.39 E-value=37 Score=27.57 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=30.4
Q ss_pred CCCCEEEEEEeeecH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 73 NEGLRFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 73 ~~~lRIaIVvArfN~-~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
-..|||.||.+-=++ ..+..|.+.+++.|++.|. ++++++.
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~---eV~v~DL 61 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGH---EVQVSDL 61 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTC---EEEEEET
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCC---eEEEEEc
Confidence 457899999986553 3677888999999999985 3666665
No 251
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=39.57 E-value=48 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.314 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
+.-.+.|+++||+ .++-+||...+|+.-. |.+.+++.-|.
T Consensus 29 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a-l~~~~~i~~i~ 68 (570)
T 2vbf_A 29 DYLLDRLHELGIE----EIFGVPGDYNLQFLDQ-IISREDMKWIG 68 (570)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH-HHHCSSCEEEE
T ss_pred HHHHHHHHHcCCC----EEEECCCcchHHHHHH-HhcCCCCeEEC
Confidence 4456778889996 7899999999998643 44444444443
No 252
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=39.07 E-value=1.3e+02 Score=23.05 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=36.6
Q ss_pred CCCEEEEEEee--ecHHHHHHHHHHHHHHHHHC----CCCCCCeEEEEecccchHH---HHHHHHhhcCCCcEEEE
Q 032216 74 EGLRFALVVAR--FNELVTKLLLEGALETFKKY----SVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 74 ~~lRIaIVvAr--fN~~It~~LleGA~~~L~~~----Gv~~e~I~vv~VPGAfELP---laak~La~s~~yDAVIa 140 (145)
+..|||++... -....-..+.+|+...+++. |+.-..++++..--..+-. -++++|.+..++|+||.
T Consensus 4 ~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig 79 (364)
T 3lop_A 4 ADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLT 79 (364)
T ss_dssp -CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEC
T ss_pred CeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEe
Confidence 45688888864 23344455555555555543 2322346655554433322 34566666678888874
No 253
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=39.01 E-value=1.1e+02 Score=24.85 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=35.7
Q ss_pred EEEEEEeeecHHHHHHHHHHHHHHHHHCCC--------------CCC-CeEEEEecccchHHHHH---HHHhhcCCCcEE
Q 032216 77 RFALVVARFNELVTKLLLEGALETFKKYSV--------------KEE-NIDVVWVPGSFEIGVVA---QQLGKSGKYTAV 138 (145)
Q Consensus 77 RIaIVvArfN~~It~~LleGA~~~L~~~Gv--------------~~e-~I~vv~VPGAfELPlaa---k~La~s~~yDAV 138 (145)
||++..++ ++ ..+++|.+.+++ .+ +.+ +++++..+ |-|..+ -.|.+.|+.||+
T Consensus 3 riv~~e~~-d~----~vl~aa~~a~~~-~~~~~~~iLvG~~~~l~~~~~~~Iv~~~---~~~~~a~~a~~lV~~G~aDa~ 73 (279)
T 1yco_A 3 TVSIAGGS-QP----EILQLVKKALKE-AEQPLQFIVFDTNENLDTENLWKYVHCS---DEAAVAQEAVSLVATGQAQIL 73 (279)
T ss_dssp EEEEETCC-SH----HHHHHHHHHHHH-CCSCEEEEEEESSCCCCSSCCSEEEECS---SHHHHHHHHHHHHHSTTCSEE
T ss_pred EEEEecCC-CH----HHHHHHHHHHHh-CCCCCeEEEEECHHHcCCCCCeEEEcCC---CCHHHHHHHHHHHHCCCCCEE
Confidence 55555442 33 466777777776 44 101 37777766 445443 456789999999
Q ss_pred EEeee
Q 032216 139 LCIGA 143 (145)
Q Consensus 139 IaLG~ 143 (145)
|+ |.
T Consensus 74 vs-G~ 77 (279)
T 1yco_A 74 LK-GI 77 (279)
T ss_dssp EE-CS
T ss_pred Ee-CC
Confidence 99 74
No 254
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=38.90 E-value=51 Score=28.10 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
+.-.+.|+++||. .++-+||...+|+.-. |.+.++..-|.
T Consensus 9 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a-l~~~~~i~~i~ 48 (552)
T 1ovm_A 9 DYLLDRLTDCGAD----HLFGVPGDYNLQFLDH-VIDSPDICWVG 48 (552)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH-HHHCSSCEEEE
T ss_pred HHHHHHHHHcCCC----EEEECCChhHHHHHHH-HhcCCCceEEe
Confidence 4446788889996 7899999999998644 34433444443
No 255
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=38.30 E-value=35 Score=30.66 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEE
Q 032216 94 LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAV 138 (145)
Q Consensus 94 leGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAV 138 (145)
-+--.+.|+++||. .++-+||...+|+.-. |.+..++.-|
T Consensus 85 a~~lv~~L~~~GV~----~vFg~PG~~~~pl~da-l~~~~~i~~v 124 (677)
T 1t9b_A 85 GQIFNEMMSRQNVD----TVFGYPGGAILPVYDA-IHNSDKFNFV 124 (677)
T ss_dssp HHHHHHHHHHTTCC----EEEECCCGGGHHHHHH-TTTCSSSEEE
T ss_pred HHHHHHHHHHcCCC----EEEEecCccHHHHHHH-HHhCCCCeEE
Confidence 35557889999997 7899999999998754 4443444444
No 256
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=38.09 E-value=44 Score=27.30 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 92 ~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+++-+++.|+..|+ .++..||--|- .+..|++.+..|+|+.
T Consensus 129 ~~~~~~~~lL~~~gi-----~~i~apgeAEA--~lA~la~~g~~~~I~S 170 (336)
T 1rxw_A 129 YIVDSAKTLLSYMGI-----PFVDAPSEGEA--QAAYMAAKGDVEYTGS 170 (336)
T ss_dssp HHHHHHHHHHHHTTC-----CEEECSSCHHH--HHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHHhCCC-----CEEEcCchHHH--HHHHHHHcCCeeEEEc
Confidence 478889999999997 47889994477 4555666777788763
No 257
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=37.89 E-value=17 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=23.3
Q ss_pred CeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 110 NIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 110 ~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
.|....+|=+|+-- -.+..+.+..++|.||++|.
T Consensus 58 ~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~ 92 (228)
T 4hps_A 58 NIEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQ 92 (228)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEEEcceEeHHHHHHHHHHHHhhCCCEEEEecc
Confidence 46677788887632 23344455568999999995
No 258
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=37.84 E-value=35 Score=27.91 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 89 It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
++..+++-+++.|+..|+. ++..| ||-=-.+..|++.+..|+|+.
T Consensus 127 vt~~~~~~~~~lL~~~gip-----~i~ap--~EADa~iA~La~~g~~~~i~S 171 (340)
T 1b43_A 127 VNEMLIEDAKKLLELMGIP-----IVQAP--SEGEAQAAYMAAKGSVYASAS 171 (340)
T ss_dssp GTHHHHHHHHHHHHHHTCC-----EEECS--SCHHHHHHHHHHHTSSSEEEC
T ss_pred CCHHHHHHHHHHHHHcCCc-----EEEcC--hhHHHHHHHHHHcCCEEEEEc
Confidence 4467888899999999974 67789 798888889998888888864
No 259
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=37.78 E-value=88 Score=24.11 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=41.9
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..|++|+.. |....+.+.+.+.+.+++.|..-... ...-++....... ..+..+.|+|+..+
T Consensus 124 ~k~~~ii~~--~~~yg~~~~~~f~~~~~~~Gg~vv~~-~~~~~~~~~~~~~---~~~~~~~dai~~~~ 185 (327)
T 3ckm_A 124 VRNPLVAMP--QNDLGQRVGNAFNVRWQQLAGTDANI-RYYNLPADVTYFV---QENNSNTTALYAVA 185 (327)
T ss_dssp CCSCEEEEE--SSHHHHHHHHHHHHHHHHHHSSCCEE-EEESSTTHHHHHH---HHSCTTCCEEEECC
T ss_pred CeeEEEEec--CChHHHHHHHHHHHHHHHCCCeEEEE-EECCCCchhhHHH---HHhccCCcEEEEEc
Confidence 457888887 56788999999999999999863322 2234455442221 22456899998765
No 260
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=37.47 E-value=66 Score=24.07 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=41.0
Q ss_pred CCCCEEEEEEeeecHHHHHHHH----------HHHHHHHHHCCCCCCCeEEEEecccch-HHHHHHHHhhcCCCcEEEEe
Q 032216 73 NEGLRFALVVARFNELVTKLLL----------EGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~Ll----------eGA~~~L~~~Gv~~e~I~vv~VPGAfE-LPlaak~La~s~~yDAVIaL 141 (145)
...+|++|+.+- +++++.+. .--.+.|++.|.. -+....||=-.| |=-+++++++..++|.||+-
T Consensus 13 ~~~~rv~IittG--de~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~--v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITIS--TSRYEKLLKKEPIVDESGDIIKQLLIENGHK--IIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEEC--HHHHHHHHTTCCCCCHHHHHHHHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeC--cccccccccCCeEeehHHHHHHHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 356799999864 22222222 2234567778874 445566887765 33455555554469999998
Q ss_pred ee
Q 032216 142 GA 143 (145)
Q Consensus 142 G~ 143 (145)
|-
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 84
No 261
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A
Probab=37.43 E-value=1.2e+02 Score=25.11 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=12.5
Q ss_pred HHhhcCCCcEEEEeee
Q 032216 128 QLGKSGKYTAVLCIGA 143 (145)
Q Consensus 128 ~La~s~~yDAVIaLG~ 143 (145)
++++++.+|.+++.|+
T Consensus 195 ~~I~~G~~d~aLvgG~ 210 (430)
T 1ox0_A 195 RSIKFGFQDVMLVGGT 210 (430)
T ss_dssp HHHHTTSCSEEEEEEE
T ss_pred HHHHcCCCCEEEEeee
Confidence 3456889999999885
No 262
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=37.33 E-value=60 Score=28.25 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 93 LLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 93 LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
.-+--.+.|+++||+ .++-+||...+|+.-.. .+.+++.-|.
T Consensus 33 ~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~dal-~~~~~i~~i~ 74 (604)
T 2x7j_A 33 YIGSFIDEFALSGIT----DAVVCPGSRSTPLAVLC-AAHPDISVHV 74 (604)
T ss_dssp HHHHHHHHHHHHTCC----EEEECCCSTTHHHHHHH-HHCTTCEEEE
T ss_pred HHHHHHHHHHHcCCC----EEEECcCcccHHHHHHH-HhCCCceEEE
Confidence 345557889999997 78999999999987543 3334455444
No 263
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=37.29 E-value=42 Score=28.87 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVI 139 (145)
+--.+.|+++||+ .++-+||...+|+.-. |.+.+++.-|.
T Consensus 7 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a-l~~~~~i~~v~ 46 (566)
T 2vbi_A 7 MYLAERLVQIGLK----HHFAVAGDYNLVLLDQ-LLLNKDMKQIY 46 (566)
T ss_dssp HHHHHHHHHHTCS----EEEECCCTTTHHHHHH-HHTCTTSEEEE
T ss_pred HHHHHHHHHcCCC----EEEeCCCCccHHHHHH-HhcCCCCeEEe
Confidence 4456788899996 7899999999998755 44444455544
No 264
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=37.19 E-value=68 Score=22.24 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=31.3
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
+.+..+.|||++....+.... ++.. .++.++.++.. .-+++.| ..+++|+++.-
T Consensus 107 ~~dL~g~~v~~~~g~~~~~~l-----------~~~~---~~~~~~~~~~~---~~~~~~l-~~grvDa~~~~ 160 (229)
T 2y7i_A 107 FADLKGKKVGLENGTTHQRYL-----------QDKQ---QAITPVAYDSY---LNAFTDL-KNNRLEGVFGD 160 (229)
T ss_dssp TGGGTTCEEEEETTSHHHHHH-----------HHHC---TTSEEEEESCH---HHHHHHH-HTTSCSEEEEE
T ss_pred HHHHCCCEEEEecCCcHHHHH-----------HHhC---CCCeEEecCCH---HHHHHHH-HcCCcCEEEec
Confidence 334567899987665543321 1111 13566777753 3344444 47899998863
No 265
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=37.15 E-value=49 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAV 138 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAV 138 (145)
+.-.+.|+++||+ .++-+||...+|+.-.. .+.++..-|
T Consensus 31 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~al-~~~~~i~~i 69 (616)
T 2pan_A 31 DAAMYVLEKEGIT----TAFGVPGAAINPFYSAM-RKHGGIRHI 69 (616)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHHH-HHHCCCEEE
T ss_pred HHHHHHHHHCCCC----EEEECCCCccHHHHHHH-HhcCCCcEE
Confidence 4445667899997 78999999999987543 333344443
No 266
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=37.11 E-value=96 Score=21.00 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+..++.+.+.++..|+. ++.....| +..-.+-..++..++|-||.
T Consensus 82 ~~~l~~~~~~~~~~g~~---~~~~v~~G--~~~~~I~~~a~~~~~dlIV~ 126 (162)
T 1mjh_A 82 KNKMENIKKELEDVGFK---VKDIIVVG--IPHEEIVKIAEDEGVDIIIM 126 (162)
T ss_dssp HHHHHHHHHHHHHTTCE---EEEEEEEE--CHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHcCCc---eEEEEcCC--CHHHHHHHHHHHcCCCEEEE
Confidence 34556666777777874 44444556 34455566677788997763
No 267
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=37.01 E-value=37 Score=24.43 Aligned_cols=39 Identities=5% Similarity=-0.048 Sum_probs=30.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeccc
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGA 119 (145)
+||.||... +. -|+.|.+...+.|++.|+. ++++++.-.
T Consensus 5 mkilii~~S-~g-~T~~la~~i~~~l~~~g~~---v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-YG-SIVELAKEIGKGAEEAGAE---VKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-SS-HHHHHHHHHHHHHHHHSCE---EEEEECCCC
T ss_pred cEEEEEEeC-cc-HHHHHHHHHHHHHHhCCCE---EEEEehhHh
Confidence 699999988 54 5889999999999888863 667776543
No 268
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=36.90 E-value=16 Score=28.47 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 90 t~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
...+++.|.+.+++.|+. ++++++. --..++| ...+.||.|++.+++
T Consensus 149 s~~~~~~a~~~~~~~~~~-~~v~~~~-~d~~~~~------~~~~~fD~V~~~~~l 195 (312)
T 3vc1_A 149 SAAQADFGNRRARELRID-DHVRSRV-CNMLDTP------FDKGAVTASWNNEST 195 (312)
T ss_dssp CHHHHHHHHHHHHHTTCT-TTEEEEE-CCTTSCC------CCTTCEEEEEEESCG
T ss_pred CHHHHHHHHHHHHHcCCC-CceEEEE-CChhcCC------CCCCCEeEEEECCch
Confidence 356888899999999885 3565543 3334555 234689999987653
No 269
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=36.89 E-value=14 Score=27.72 Aligned_cols=46 Identities=4% Similarity=0.032 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++.|.+.++..|+. .+++++.. -..++| ...+.||.|++.+++
T Consensus 79 ~~~~~~a~~~~~~~~~~-~~v~~~~~-d~~~~~------~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 79 SGFIDIFNRNARQSGLQ-NRVTGIVG-SMDDLP------FRNEELDLIWSEGAI 124 (267)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEEEC-CTTSCC------CCTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHHHcCCC-cCcEEEEc-ChhhCC------CCCCCEEEEEEcCCc
Confidence 35788888888988885 34655433 234444 124678988887653
No 270
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=36.55 E-value=18 Score=25.57 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+++.|.+.++..|+. .+++.+. --..++| ...+.||.|++.++
T Consensus 76 ~~~~~~a~~~~~~~~~~-~~~~~~~-~d~~~~~------~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 76 KHMNEIALKNIADANLN-DRIQIVQ-GDVHNIP------IEDNYADLIVSRGS 120 (219)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEEE-CBTTBCS------SCTTCEEEEEEESC
T ss_pred HHHHHHHHHHHHhcccc-CceEEEE-cCHHHCC------CCcccccEEEECch
Confidence 35788888999988875 3565543 3334444 23467999988765
No 271
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=36.50 E-value=1.5e+02 Score=22.92 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=45.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
..||+|+...-... .....+.+.+.++++|+. +....+.-.-|+..+++.+. ++.|++.+.
T Consensus 140 ~k~vgvi~~~~~~~-s~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~l~--~~~d~i~~~ 200 (302)
T 3lkv_A 140 VKSIGVVYNPGEAN-AVSLMELLKLSAAKHGIK---LVEATALKSADVQSATQAIA--EKSDVIYAL 200 (302)
T ss_dssp CCEEEEEECTTCHH-HHHHHHHHHHHHHHTTCE---EEEEECSSGGGHHHHHHHHH--TTCSEEEEC
T ss_pred CCEEEEEeCCCccc-HHHHHHHHHHHHHHcCCE---EEEEecCChHHHHHHHHhcc--CCeeEEEEe
Confidence 35999997543222 234567788888899974 67788999999999998886 478888754
No 272
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=36.17 E-value=22 Score=27.95 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=24.5
Q ss_pred CeEEEEecccch-HHHHHHHHhhcCCCcEEEEeee
Q 032216 110 NIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 110 ~I~vv~VPGAfE-LPlaak~La~s~~yDAVIaLG~ 143 (145)
.|....+|=+|+ ..-.+..+.+..++|.||++|.
T Consensus 36 ~i~~~~lPv~y~~~~~~l~~~~~~~~Pd~VihvG~ 70 (215)
T 3lac_A 36 KIISKQVPTVFHKSISVLKEYIEELAPEFIICIGQ 70 (215)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEEEEeeEhHHHHHHHHHHHHhhCCCeEEEecc
Confidence 467778888875 4444555556668999999995
No 273
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=36.17 E-value=37 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=29.4
Q ss_pred CCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 75 GLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 75 ~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
++||.||.+.=+ .-.+..|.+.+++.|++.|.. ++++++
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~e---v~~~dL 40 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCT---VTVSDL 40 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCE---EEEEET
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCE---EEEEEh
Confidence 478988887665 457888899999999888863 566654
No 274
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=36.14 E-value=1e+02 Score=21.08 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEE--EEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 90 TKLLLEGALETFKKYSVKEENIDV--VWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 90 t~~LleGA~~~L~~~Gv~~e~I~v--v~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+..++.+.+.+...|+. ++. ....| +..-.+-..++..++|-||.
T Consensus 76 ~~~~l~~~~~~~~~~g~~---~~~~~~~~~g--~~~~~I~~~a~~~~~DlIV~ 123 (170)
T 2dum_A 76 ASRKLQEKAEEVKRAFRA---KNVRTIIRFG--IPWDEIVKVAEEENVSLIIL 123 (170)
T ss_dssp HHHHHHHHHHHHHHHTTC---SEEEEEEEEE--CHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCc---eeeeeEEecC--ChHHHHHHHHHHcCCCEEEE
Confidence 445667777778778875 443 44456 34455566677788997663
No 275
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=35.88 E-value=64 Score=28.14 Aligned_cols=40 Identities=10% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhc-CCCcEEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS-GKYTAVL 139 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s-~~yDAVI 139 (145)
+--.+.|+++||+ .++-+||...+|+.-. |.+. .+..-|.
T Consensus 15 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~da-l~~~~~~i~~i~ 55 (603)
T 4feg_A 15 AAVIKVLEAWGVD----HLYGIPGGSINSIMDA-LSAERDRIHYIQ 55 (603)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH-HHHTTTTSEEEE
T ss_pred HHHHHHHHHCCCC----EEEEeCCCchHHHHHH-HHhccCCCeEEE
Confidence 4456789999996 7899999999999854 3333 3455444
No 276
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=35.85 E-value=1.1e+02 Score=21.31 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 90 t~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+..++.+.+.+.+.|+. +++...+.|. ..-.+-..+++.++|-||.
T Consensus 79 ~~~~l~~~~~~~~~~gv~--~v~~~v~~G~--~~~~I~~~a~~~~~DLIV~ 125 (163)
T 1tq8_A 79 IYEILHDAKERAHNAGAK--NVEERPIVGA--PVDALVNLADEEKADLLVV 125 (163)
T ss_dssp HHHHHHHHHHHHHTTTCC--EEEEEEECSS--HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCC--eEEEEEecCC--HHHHHHHHHHhcCCCEEEE
Confidence 346677788888888874 3666667783 4455556677788997763
No 277
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=35.77 E-value=82 Score=27.06 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEE
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAV 138 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAV 138 (145)
+--.+.|+++||+ .++-+||...+|+.-. |.+..++.-|
T Consensus 12 ~~lv~~L~~~GV~----~vFg~PG~~~~~l~da-l~~~~~i~~i 50 (556)
T 3hww_A 12 AVILEALTRHGVR----HICIAPGSRSTLLTLA-AAENSAFIHH 50 (556)
T ss_dssp HHHHHHHHTTTCC----EEEECCCTTSHHHHHH-HHHCTTCEEE
T ss_pred HHHHHHHHHCCCC----EEEEcCCCCcHHHHHH-HhhCCCceEE
Confidence 4446889999997 7899999999998744 3333344333
No 278
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=35.70 E-value=49 Score=27.43 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=32.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeccc-----chHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGA-----fELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||..+.-. .+.+...+.|++.+ +.++ +|. +|.=..+-..++..++|.||++|
T Consensus 37 ~r~liVtd~~~~----~~~~~v~~~L~~~~-----~~~f--~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 97 (358)
T 3jzd_A 37 KRALVLCTPNQQ----AEAERIADLLGPLS-----AGVY--AGAVMHVPIESARDATARAREAGADCAVAVG 97 (358)
T ss_dssp SCEEEECCGGGH----HHHHHHHHHHGGGE-----EEEE--CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CeEEEEeCCcHH----HHHHHHHHHhccCC-----EEEe--cCCcCCCCHHHHHHHHHHhhccCCCEEEEeC
Confidence 588888876532 34555666666543 2222 332 33323333344567899999998
No 279
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=35.23 E-value=1.1e+02 Score=22.58 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=45.3
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
+||.|..-.-|+++.+. ...+.+..|. .+-.|..+=|+---.++|++.++|.-|+.+.
T Consensus 1 mkililintnndelikk----ikkevenqgy-----qvrdvndsdelkkemkklaeeknfekiliis 58 (134)
T 2lci_A 1 MKILILINTNNDELIKK----IKKEVENQGY-----QVRDVNDSDELKKEMKKLAEEKNFEKILIIS 58 (134)
T ss_dssp CCCEEEEECSCHHHHHH----HHHHTTTTTC-----EEEEECSHHHHHHHHHHHHHCCSCCCEEEEE
T ss_pred CeEEEEEcCCcHHHHHH----HHHHHHccCe-----eeeecCchHHHHHHHHHHHhhcCcceEEEEc
Confidence 47788888888875544 4556555565 6889999999999999999999998887653
No 280
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=35.02 E-value=42 Score=24.41 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEec----------ccchHHHHHHHHhhcCCCcEEEEe
Q 032216 92 LLLEGALETFKKYSVKEENIDVVWVP----------GSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 92 ~LleGA~~~L~~~Gv~~e~I~vv~VP----------GAfELPlaak~La~s~~yDAVIaL 141 (145)
.-..+..+.|.+.|+ +++..| ++.++-+++..+...+++|.+|-+
T Consensus 61 ~~~~~~~~~L~~~g~-----~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLv 115 (165)
T 2qip_A 61 PKQRQFHHILRGVGF-----EVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILV 115 (165)
T ss_dssp HHHHHHHHHHHHHTC-----EEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEE
T ss_pred hhHHHHHHHHHHCCc-----EEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEE
Confidence 345678889999997 344444 889999999887555789988754
No 281
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=34.78 E-value=25 Score=26.55 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++.|.+.+.+.|.. .+++++. --..++| +.||.|++.+++
T Consensus 97 ~~~~~~a~~~~~~~~~~-~~~~~~~-~d~~~~~---------~~fD~v~~~~~l 139 (287)
T 1kpg_A 97 KNQANHVQQLVANSENL-RSKRVLL-AGWEQFD---------EPVDRIVSIGAF 139 (287)
T ss_dssp HHHHHHHHHHHHTCCCC-SCEEEEE-SCGGGCC---------CCCSEEEEESCG
T ss_pred HHHHHHHHHHHHhcCCC-CCeEEEE-CChhhCC---------CCeeEEEEeCch
Confidence 45778888888888875 3455442 2233443 679999988753
No 282
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=34.77 E-value=58 Score=23.53 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=28.0
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEecc
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPG 118 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~-~Gv~~e~I~vv~VPG 118 (145)
+||.||...-+ --|+.|.+...+.|.+ .|+ +++++.+.-
T Consensus 5 ~kiliiy~S~~-GnT~~~a~~i~~~l~~~~g~---~v~~~~l~~ 44 (188)
T 2ark_A 5 GKVLVIYDTRT-GNTKKMAELVAEGARSLEGT---EVRLKHVDE 44 (188)
T ss_dssp EEEEEEECCSS-SHHHHHHHHHHHHHHTSTTE---EEEEEETTT
T ss_pred CEEEEEEECCC-cHHHHHHHHHHHHHhhcCCC---eEEEEEhhh
Confidence 58999987744 4577888888888887 675 366666543
No 283
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=34.68 E-value=62 Score=25.15 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=25.5
Q ss_pred CCeEEEEecccchHH-HHHHHHhhcCCCcEEEEeee
Q 032216 109 ENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 109 e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG~ 143 (145)
..|....+|=+|+-- -.+..+.+..++|.||++|.
T Consensus 31 ~~i~~~~lPv~~~~~~~~l~~~~~~~~Pd~vi~vG~ 66 (206)
T 1iu8_A 31 PEVVGEILPVSFKRAREKLLKVLDDVRPDITINLGL 66 (206)
T ss_dssp TTEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eEEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEccc
Confidence 358888999999652 23444555568999999995
No 284
>3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica}
Probab=34.66 E-value=84 Score=26.01 Aligned_cols=59 Identities=8% Similarity=0.029 Sum_probs=38.9
Q ss_pred hhhccccCCCCCCEEEEEEe-eecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh
Q 032216 64 RHLTGFLTKNEGLRFALVVA-RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK 131 (145)
Q Consensus 64 ~~~~g~l~~~~~lRIaIVvA-rfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~ 131 (145)
..++..-+.....+|++=-- .|.++ ..+...++.|++++|. ..+-|||.+ |.+.+.+.+
T Consensus 25 ~~~~~~~~~t~~k~iaLTFDi~Wg~~---~~iprILdiL~~~~Vk----ATFFv~G~~--p~i~k~I~~ 84 (257)
T 3hft_A 25 SDIDINQPESWRGRIFLTFDIDWAAD---FVLQDTIDLIEGAGVC----ATWFATHST--PLLENIRRN 84 (257)
T ss_dssp GGCCTTCGGGTTTCEEEEEECTTCCH---HHHHHHHHHHHHHTCC----EEEEECSCC--THHHHHHHC
T ss_pred eccCCCCccccCceEEEEEECCCcch---hhHHHHHHHHHHcCCC----eEEEecCCC--HHHHHHHHH
Confidence 33443333455678887544 77765 3445567899999996 677799998 666666543
No 285
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=34.65 E-value=39 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=17.8
Q ss_pred CeEEEEecccc-------hHHHHHHHH---hhcCCCcEEEEee
Q 032216 110 NIDVVWVPGSF-------EIGVVAQQL---GKSGKYTAVLCIG 142 (145)
Q Consensus 110 ~I~vv~VPGAf-------ELPlaak~L---a~s~~yDAVIaLG 142 (145)
++.++-||||| .||--.+.+ .+.+..|.|+|+.
T Consensus 71 kVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd~I~ciS 113 (199)
T 4h86_A 71 KVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVT 113 (199)
T ss_dssp EEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCCEEEEEE
T ss_pred eEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCcEEEEEE
Confidence 35566677765 355433332 2445666666664
No 286
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=34.38 E-value=78 Score=22.61 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=30.8
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
+..+.|||++........ |++.. .++.++.++.. .-+++.| .++++|+++.-
T Consensus 127 dL~g~~i~v~~g~~~~~~-----------l~~~~---~~~~~~~~~~~---~~~~~~L-~~GrvDa~i~~ 178 (249)
T 4f3p_A 127 DLNGKVIAAKTGTATIDW-----------IKAHL---KPKEIRQFPNI---DQAYLAL-EAGRVDAAMHD 178 (249)
T ss_dssp GGTTSEEEEETTSHHHHH-----------HHHHC---CCSEEEEESSH---HHHHHHH-HTTSSSEEEEE
T ss_pred HhCCCEEEEeCCChHHHH-----------HHhcC---CCceEEEcCCH---HHHHHHH-HcCCeeEEEeC
Confidence 456789998766554332 22222 24567777753 3344444 47899998863
No 287
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=34.24 E-value=40 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
+--.+.|+++|++ .++-+||...+|+.-.
T Consensus 6 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 34 (528)
T 1q6z_A 6 GTTYELLRRQGID----TVFGNPGSNALPFLKD 34 (528)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHTT
T ss_pred HHHHHHHHHCCCC----EEEECCCcchHHHHHH
Confidence 4457889999997 7899999999998643
No 288
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=34.23 E-value=56 Score=27.27 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 89 It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
++..|.+-+++.|+..|+ ..+..| ||-=-.+..|++.+..|+|+.
T Consensus 125 vt~~~~~~i~~~L~~~gI-----p~i~ap--~EADaqiA~La~~g~~~~I~S 169 (352)
T 3qe9_Y 125 ITHAMAHKVIKAARSQGV-----DCLVAP--YEADAQLAYLNKAGIVQAIIT 169 (352)
T ss_dssp CCHHHHHHHHHHHHHTTC-----EEEECS--SCHHHHHHHHHHTTSCSEEEC
T ss_pred CCHHHHHHHHHHHHHcCC-----cEEECC--cchHHHHHHHHHCCCeEEEEe
Confidence 345688889999999997 455567 898888888998888888874
No 289
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=33.41 E-value=63 Score=23.05 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=30.4
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+.++.|||++....+....+.. . .++.++.++.. .-+++.| .+|++|+++.
T Consensus 145 ~~dL~g~~i~~~~g~~~~~~l~~~------------~--~~~~~~~~~~~---~~~~~~l-~~g~vDa~~~ 197 (269)
T 4i62_A 145 VNDLAQKKVGAQKGSIQETMAKDL------------L--QNSSLVSLPKN---GNLITDL-KSGQVDAVIF 197 (269)
T ss_dssp GGGGC-CEEEEETTSHHHHHHHHH------------C--TTSEEEEESCH---HHHHHHH-HTTSSSEEEE
T ss_pred HHHhCCCeEEEecCchHHHHHHHh------------C--CCCcEEecCCH---HHHHHHH-HcCCCCEEEe
Confidence 334567899988765554332211 1 13567777754 3334444 5789999885
No 290
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=33.36 E-value=19 Score=26.56 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++.|.+.+++.|+. +++.++. --+.++|. .+.||.|++.+++
T Consensus 69 ~~~l~~a~~~~~~~~~~-~~v~~~~-~d~~~~~~-------~~~fD~V~~~~~~ 113 (256)
T 1nkv_A 69 SLFTAQAKRRAEELGVS-ERVHFIH-NDAAGYVA-------NEKCDVAACVGAT 113 (256)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEEE-SCCTTCCC-------SSCEEEEEEESCG
T ss_pred HHHHHHHHHHHHhcCCC-cceEEEE-CChHhCCc-------CCCCCEEEECCCh
Confidence 35788888888888875 3555442 22334441 4578888887653
No 291
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=33.14 E-value=1.7e+02 Score=22.65 Aligned_cols=66 Identities=9% Similarity=-0.130 Sum_probs=31.0
Q ss_pred CCEEEEEEee--ecHHHHHHHHHHHHHHHHH---C-CCCCCCeEEEEecccchHH---HHHHHHhhcCCCcEEEE
Q 032216 75 GLRFALVVAR--FNELVTKLLLEGALETFKK---Y-SVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 75 ~lRIaIVvAr--fN~~It~~LleGA~~~L~~---~-Gv~~e~I~vv~VPGAfELP---laak~La~s~~yDAVIa 140 (145)
..|||++... -+...-..+.+|+...+++ . |+.-..++++..--..+-. -++++|.+.+++|+||.
T Consensus 7 ~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig 81 (392)
T 3lkb_A 7 QVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS 81 (392)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred ceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe
Confidence 4577777653 2233444454554444433 2 2322234444443333322 23445555557777765
No 292
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=32.90 E-value=43 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCc
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYT 136 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yD 136 (145)
+--.+.|+++||+ .++-+||...+|+.-. |.+.+++.
T Consensus 8 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a-l~~~~~i~ 44 (563)
T 2vk8_A 8 KYLFERLKQVNVN----TVFGLPGDFNLSLLDK-IYEVEGMR 44 (563)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHG-GGGSTTCE
T ss_pred HHHHHHHHHcCCC----EEEEcCCcchHHHHHH-HhhcCCce
Confidence 4457889999997 7899999999997643 33333343
No 293
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=32.84 E-value=1.6e+02 Score=22.31 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCCEEEEEEeee--cHHHHHHHHHHHHHHHHHCC----CCCCCeEEEEecccchHH---HHHHHHhhcCCCcEEEE
Q 032216 74 EGLRFALVVARF--NELVTKLLLEGALETFKKYS----VKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 74 ~~lRIaIVvArf--N~~It~~LleGA~~~L~~~G----v~~e~I~vv~VPGAfELP---laak~La~s~~yDAVIa 140 (145)
+..+||++...- +...-..+++|+...+++.+ +.-..++++..--..+-- -.+++|.+.+++|+||.
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 78 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLG 78 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEc
Confidence 346788887642 12334445555554444432 222235554443333222 23455665678888875
No 294
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=32.74 E-value=18 Score=30.39 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
..+++-+.+.|+..|+ .++..|| |-=-.+..|++.+..|+|+.
T Consensus 134 ~~~~~~~~~lL~~~Gi-----~~i~apg--EADd~iA~La~~g~~~~iiS 176 (379)
T 1ul1_X 134 KQHNDECKHLLSLMGI-----PYLDAPS--EAEASCAALVKAGKVYAAAT 176 (379)
T ss_dssp CSCHHHHHHHHHHHTC-----CEEECSS--CHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHHHHcCC-----CeecCCC--cHHHHHHHHHhcCCeEEEEe
Confidence 4567788889998887 4788999 99999999998888888763
No 295
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=32.74 E-value=51 Score=24.29 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=29.5
Q ss_pred CEEEEEEeeecH--HHHHHHHHHHHHHHHHC--CCCCCCeEEEEe
Q 032216 76 LRFALVVARFNE--LVTKLLLEGALETFKKY--SVKEENIDVVWV 116 (145)
Q Consensus 76 lRIaIVvArfN~--~It~~LleGA~~~L~~~--Gv~~e~I~vv~V 116 (145)
+||.||.+.-+. -.+..|.+.+.+.|++. |. +++++++
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~---~v~~~dL 43 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQA---RVARREV 43 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTC---CEEEEES
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC---eEEEEEC
Confidence 588888887664 48999999999999987 65 3666654
No 296
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=32.62 E-value=68 Score=23.33 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=31.3
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeccc
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGA 119 (145)
.+||+||...-+ --|+.|.+...+.|++.|+ +++++++.-.
T Consensus 6 mmkilii~~S~~-g~T~~la~~i~~~l~~~g~---~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSST-GTGYAMAQEAAEAGRAAGA---EVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCSS-SHHHHHHHHHHHHHHHTTC---EEEEEECCCC
T ss_pred CCeEEEEEECCC-ChHHHHHHHHHHHHhcCCC---EEEEEecccc
Confidence 469999998775 3588888888888988886 3677776553
No 297
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=32.45 E-value=1.6e+02 Score=22.73 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=34.3
Q ss_pred CCCCEEEEEEeeecH-HHHHHHHHHHHHHHHH---CC-CCC-CCeEEEEecccchHHH---HHHHHhhcCCCcEEEE
Q 032216 73 NEGLRFALVVARFNE-LVTKLLLEGALETFKK---YS-VKE-ENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLC 140 (145)
Q Consensus 73 ~~~lRIaIVvArfN~-~It~~LleGA~~~L~~---~G-v~~-e~I~vv~VPGAfELPl---aak~La~s~~yDAVIa 140 (145)
.+..|||++...=.. .+...+.+|+...+++ .| +.. ..++++..--..+-.. .+++|.+..++|+||.
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG 79 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAG 79 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEC
Confidence 345688888763111 3344455555544444 22 222 2455554444443332 3455655567888775
No 298
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=32.29 E-value=59 Score=23.13 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=30.6
Q ss_pred CEEEEEEeeecH--HHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 76 LRFALVVARFNE--LVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 76 lRIaIVvArfN~--~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
+||.||.+.-+. -.++.|.+.+.+.|++.|-. .+++++.+
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~-~~v~~~dl 43 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVA-DEITVRDL 43 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTT-CEEEEEET
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC-CeEEEEec
Confidence 589999988773 78999999999999987721 13666664
No 299
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=32.07 E-value=35 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=23.8
Q ss_pred CeEEEEecccchH-HHHHHHHhhcCCCcEEEEeee
Q 032216 110 NIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 110 ~I~vv~VPGAfEL-Plaak~La~s~~yDAVIaLG~ 143 (145)
.|....+|=+|+- .-.+..+.+..++|.||++|.
T Consensus 37 ~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~ 71 (223)
T 3ro0_A 37 SIVSEQVPTVFYKSLAVLREAMKKHQPDIIICVGQ 71 (223)
T ss_dssp EEEEEEECSCTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEEEeeeEehhHHHHHHHHHHHhCCCEEEEecc
Confidence 4677788888863 233344455568999999995
No 300
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=31.44 E-value=1.8e+02 Score=23.00 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=39.1
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
..+|+.|+...-+. -|+.|.+...+.|.+.|+ .++++.+.- ++.+-..+.+. .+|+||.
T Consensus 255 ~~~k~~i~~~S~~g-nT~~la~~i~~~l~~~g~---~v~~~~~~~-~~~~~~~~~l~---~~d~iii 313 (404)
T 2ohh_A 255 VDERVTVIYDTMHG-STRKMAHAIAEGAMSEGV---DVRVYCLHE-DDRSEIVKDIL---ESGAIAL 313 (404)
T ss_dssp CCSEEEEEECCSSS-HHHHHHHHHHHHHHTTTC---EEEEEETTT-SCHHHHHHHHH---TCSEEEE
T ss_pred CCCcEEEEEECCCh-HHHHHHHHHHHHHHhCCC---eEEEEECCC-CCHHHHHHHHH---HCCEEEE
Confidence 45789888877543 477888888888887776 366676653 34443344443 6888774
No 301
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=31.23 E-value=80 Score=23.60 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 71 ~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+.++.|||+.....+....+ +.. .++.++.++.. +-+++.| ..+++|+++.
T Consensus 160 ~dL~gk~v~~~~g~~~~~~l~-----------~~~---~~~~~~~~~~~---~~~~~~l-~~G~vDa~~~ 211 (291)
T 2yjp_A 160 AQLKDQTLLVNKGTTADAFFT-----------KSH---PEVKLLKFDQN---TETFDAL-KDGRGVALAH 211 (291)
T ss_dssp GGGTTSEEEEETTSHHHHHHH-----------HHC---TTSEEEEESSH---HHHHHHH-HTTSSSEEEE
T ss_pred HHhCCCEEEEecCCcHHHHHH-----------HhC---CCceEEEeCCH---HHHHHHH-HcCCccEEEe
Confidence 345678999865443333221 111 23566777743 3344444 4689999886
No 302
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=31.16 E-value=91 Score=25.14 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHCCCCCCCeEEEEeccc
Q 032216 97 ALETFKKYSVKEENIDVVWVPGS 119 (145)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA 119 (145)
....|+++|+..++++++.++..
T Consensus 160 ~~~~L~~~Gl~~~dv~~v~~~~~ 182 (365)
T 2de3_A 160 LLHTLEHGELGVDDVELVPISSP 182 (365)
T ss_dssp HHHHHHHTTCCGGGSEEEECCCT
T ss_pred HHHHHHHcCCCHHHeEEEECCCc
Confidence 45567889998888998888764
No 303
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=30.84 E-value=57 Score=26.63 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=31.6
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccc-----hHHHHHHHHhhcCCC---cEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-----EIGVVAQQLGKSGKY---TAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAf-----ELPlaak~La~s~~y---DAVIaLG 142 (145)
+.|+.||..+ .+.+...+...+.|++. ++.++.+||.= |-=..+-..+...++ |.||++|
T Consensus 26 ~~~~livtd~---~v~~~~~~~v~~~L~~~-----~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavG 93 (343)
T 3clh_A 26 KQKALIISDS---IVAGLHLPYLLERLKAL-----EVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALG 93 (343)
T ss_dssp SSCEEEEEEH---HHHTTTHHHHHTTEECS-----CEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CCEEEEEECC---cHHHHHHHHHHHHHHhC-----CcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEEC
Confidence 3588888753 33332233333333222 46667777753 222222223344556 9999998
No 304
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=30.66 E-value=97 Score=21.67 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 71 ~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
.+..+.|||++....+....+.+. +.++. ..+.+..+... ..-+++.| ..|++|++++=
T Consensus 111 ~dL~g~~i~~~~g~~~~~~l~~~~-------~~~~~--~~~~~~~~~~~--~~~~~~~L-~~g~vDa~~~~ 169 (246)
T 4eq9_A 111 DDIGGKSTEVVQATTSAKQLEAYN-------AEHTD--NPTILNYTKAD--FQQIMVRL-SDGQFDYKIFD 169 (246)
T ss_dssp GGCTTCEEEECTTCHHHHHHHHHH-------HHCTT--SCCEEEECCCC--HHHHHHHH-HTTSSSEEEEE
T ss_pred HHhCCCEEEEecCccHHHHHHHHH-------hhCCC--cceEEEecCCC--HHHHHHHH-HcCCceEEEec
Confidence 345688999987766655433332 23332 23555544322 33445554 47899999863
No 305
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=30.61 E-value=85 Score=22.08 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=30.1
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+..++|||++.........+. . .++.++.++..- -+++.| ..+++|+++.
T Consensus 113 ~~dL~g~~i~v~~g~~~~~~l~~-------------~--~~~~~~~~~~~~---~~~~~L-~~g~vDa~~~ 164 (242)
T 3del_B 113 LPLTQYRSVAVQTGTYQEAYLQS-------------L--SEVHIRSFDSTL---EVLMEV-MHGKSPVAVL 164 (242)
T ss_dssp CCGGGSSCEEEETTSHHHHHHHH-------------S--TTCCEEEESSHH---HHHHHH-HTTSSSEEEE
T ss_pred HHHhCCCEEEEEcCcHHHHHHHh-------------C--CCceEEEECCHH---HHHHHH-HcCCCCEEEe
Confidence 33456789998765544332221 1 235666777543 344444 5789999876
No 306
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=30.53 E-value=1.3e+02 Score=20.53 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=29.8
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+..+.|||++......... ++.. .++.++.++.. .-+++.| ..+++|+++.
T Consensus 104 ~~dL~g~~i~~~~g~~~~~~l-----------~~~~---~~~~~~~~~~~---~~~~~~l-~~g~vDa~~~ 156 (226)
T 1wdn_A 104 VKDLDGKVVAVKSGTGSVDYA-----------KANI---KTKDLRQFPNI---DNAYMEL-GTNRADAVLH 156 (226)
T ss_dssp STTTTTCEEEEETTSHHHHHH-----------HHHC---CCSEEEEESSH---HHHHHHH-HTTSCSEEEE
T ss_pred HHHhCCCEEEEEcCCcHHHHH-----------HHhC---CCceEEEeCCH---HHHHHHH-HcCCcCEEEe
Confidence 345667899987554433321 1111 23566777753 3334444 4789999886
No 307
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=30.36 E-value=42 Score=28.95 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 94 LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 94 leGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
-+--.+.|+++||+ .++-+||...+|+.-.
T Consensus 24 a~~lv~~L~~~GV~----~vfg~PG~~~~~l~~a 53 (565)
T 2nxw_A 24 AEALLRALKDRGAQ----AMFGIPGDFALPFFKV 53 (565)
T ss_dssp HHHHHHHHHHTTCC----CEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHHcCCC----EEEECCCcchHHHHHH
Confidence 34557788899997 5899999999998754
No 308
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=30.36 E-value=51 Score=23.96 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=29.7
Q ss_pred CEEEEEEeeec---HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 76 LRFALVVARFN---ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 76 lRIaIVvArfN---~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
+||.||.+.-+ .-.+..|.+.+.+.+++.|-. .+++++.+
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~-~~v~~~dL 44 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPS-DEIEILDV 44 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTT-SEEEEEET
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCC-CeEEEeeC
Confidence 48888888777 478999999999999988721 13555554
No 309
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=30.29 E-value=1.7e+02 Score=23.96 Aligned_cols=63 Identities=10% Similarity=-0.053 Sum_probs=42.1
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHH----HHHhhcCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVA----QQLGKSGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaa----k~La~s~~yDAVIaL 141 (145)
.-|||+|.+.=...+.+ -.+|..+.++..+.+ -++.+.++ |+|.=|--. +.|.+ .+.|+|.+.
T Consensus 149 ~~kIGfVgg~~~p~v~~-~~~GF~~G~k~~np~-i~v~~~~~-g~~~d~~kg~~~a~~l~~-~G~DvIf~~ 215 (356)
T 3s99_A 149 KGIAGYIGSVPVPEVVQ-GINSFMLGAQSVNPD-FRVKVIWV-NSWFDPGKEADAAKALID-QGVDIITQH 215 (356)
T ss_dssp SCEEEEEECCCCHHHHH-HHHHHHHHHHTTCTT-CEEEEEEC-SSSCCHHHHHHHHHHHHH-TTCSEEEES
T ss_pred CCEEEEECCCccHHHHH-HHHHHHHHHHHHCCC-CEEEEEEC-CCCCChHHHHHHHHHHHh-CCCcEEEEC
Confidence 35999999876676665 579999999988764 23555555 675444433 34444 368988763
No 310
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=30.22 E-value=1e+02 Score=21.28 Aligned_cols=49 Identities=16% Similarity=0.013 Sum_probs=28.9
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+..+.|||++....... .|++.+ +.++.++.. .-+++.| ..++.|+++.
T Consensus 113 dL~g~~v~~~~g~~~~~-----------~l~~~~-----~~~~~~~~~---~~~~~~l-~~g~vDa~~~ 161 (233)
T 1ii5_A 113 DLKNKEVAVVRDTTAVD-----------WANFYQ-----ADVRETNNL---TAAITLL-QKKQVEAVMF 161 (233)
T ss_dssp GGTTCEEEEETTSHHHH-----------HHHHTT-----CEEEEESSH---HHHHHHH-HTTSCSEEEE
T ss_pred HhCCCeEEEECCccHHH-----------HHHHcC-----CCeEEcCCH---HHHHHHH-HcCCccEEEe
Confidence 45678999876544433 222223 456666643 3344444 4789999886
No 311
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=30.12 E-value=45 Score=24.76 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-HHHHHHhhcCCCcEEEEee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-laak~La~s~~yDAVIaLG 142 (145)
..+++-|.+.+++.|+. ++++++.-...-.+| .. .+.||.|++-+
T Consensus 105 ~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~------~~~fD~V~~~~ 150 (232)
T 3ntv_A 105 ETMIQYAKQNLATYHFE-NQVRIIEGNALEQFENVN------DKVYDMIFIDA 150 (232)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEEESCGGGCHHHHT------TSCEEEEEEET
T ss_pred HHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHHhhc------cCCccEEEEcC
Confidence 34788889999999985 467766544432244 22 46899988643
No 312
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=30.12 E-value=53 Score=28.49 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
+.-.+.|+++||+ .++-+||...+|+.-.
T Consensus 8 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 36 (589)
T 2pgn_A 8 DLIVEALEEYGTE----QVVGFIGHTSHFVADA 36 (589)
T ss_dssp HHHHHHHHHTTCC----EEEEECSGGGHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEEecCCchHHHHHH
Confidence 4457889999997 7899999999998754
No 313
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.92 E-value=1.2e+02 Score=24.72 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=40.1
Q ss_pred CCCCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH-----------HHHHHHhhcCCCcEEEE
Q 032216 73 NEGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-----------VVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 73 ~~~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP-----------laak~La~s~~yDAVIa 140 (145)
.++-+||||.-.+- ....+.-++.+++.|++.|.. ++.-|-+++-. --++.+.+...+|||+|
T Consensus 10 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~-----v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~ 84 (327)
T 4h1h_A 10 KQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFK-----VTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILT 84 (327)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCE-----EEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCE-----EEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 35669999986543 222234578899999999973 44444444321 11123345678999998
Q ss_pred e
Q 032216 141 I 141 (145)
Q Consensus 141 L 141 (145)
.
T Consensus 85 ~ 85 (327)
T 4h1h_A 85 V 85 (327)
T ss_dssp S
T ss_pred c
Confidence 5
No 314
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=29.87 E-value=1.2e+02 Score=25.16 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=31.3
Q ss_pred CEEEEEEeee-cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeccc-----chHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArf-N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGA-----fELPlaak~La~s~~yDAVIaLG 142 (145)
.|+.||..+- -.. ..+.+...+.|+ |+ ++...+|. +|.=..+-..++..++|.||++|
T Consensus 51 ~r~liVtd~~~~~~--~g~~~~v~~~L~--g~-----~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 114 (408)
T 1oj7_A 51 ARVLITYGGGSVKK--TGVLDQVLDALK--GM-----DVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVG 114 (408)
T ss_dssp CEEEEEECSSHHHH--HSHHHHHHHHTT--TS-----EEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEEEECCchhhh--ccHHHHHHHHhC--CC-----EEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5898888542 111 013444445554 44 34445553 33322233344567889999998
No 315
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=29.82 E-value=96 Score=22.95 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=30.0
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+..+.|||++....+....+ +.+ .++.++.++..-| +++.| ..|++|+++.
T Consensus 148 ~~dL~g~~i~~~~g~~~~~~l~-----------~~~---~~~~~~~~~~~~~---~~~~L-~~G~vDa~~~ 200 (292)
T 1xt8_A 148 VEDLKDKTLLLNKGTTADAYFT-----------QNY---PNIKTLKYDQNTE---TFAAL-MDKRGDALSH 200 (292)
T ss_dssp SGGGTTSEEEEETTSHHHHHHH-----------HHC---TTSEEEEESSHHH---HHHHH-HTTSSSEEEE
T ss_pred HHHhCCCEEEEeCCCcHHHHHH-----------HhC---CCceEEEcCCHHH---HHHHH-HcCCccEEEe
Confidence 3345678999875444333221 111 2456677775433 34444 5789999886
No 316
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=29.42 E-value=96 Score=25.55 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=39.6
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHH--HHHCCCCCCCeEEEEe-c---ccch--H-------------HHHHHHHhh
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALET--FKKYSVKEENIDVVWV-P---GSFE--I-------------GVVAQQLGK 131 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~--L~~~Gv~~e~I~vv~V-P---GAfE--L-------------Plaak~La~ 131 (145)
...+||++|...|+..-+..++..-.+. +.+.|. ++.++.- | +.++ + ...+.++++
T Consensus 203 ~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 279 (568)
T 2vsy_A 203 KGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDL---QMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIR 279 (568)
T ss_dssp SSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTE---EEEEEESSCCCSCHHHHHHHHTSEEEECTTCCHHHHHHHHH
T ss_pred CCCeEEEEECcccccChHHHHHHHHHhhccCCcccE---EEEEEECCCCCccHHHHHHHhcCeEEECCCCCHHHHHHHHH
Confidence 4568999999999865556666666666 565564 2333332 1 1111 0 123444556
Q ss_pred cCCCcEEEEe
Q 032216 132 SGKYTAVLCI 141 (145)
Q Consensus 132 s~~yDAVIaL 141 (145)
..++|.|++.
T Consensus 280 ~~~~Div~~~ 289 (568)
T 2vsy_A 280 HHGIDLLFDL 289 (568)
T ss_dssp HTTCSEEEEC
T ss_pred hCCCCEEEEC
Confidence 7789999864
No 317
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=29.12 E-value=1.2e+02 Score=23.23 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=17.7
Q ss_pred CCCCEEEEEEeeecHH--HHHHHHHHHHHHHHHCCC
Q 032216 73 NEGLRFALVVARFNEL--VTKLLLEGALETFKKYSV 106 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~--It~~LleGA~~~L~~~Gv 106 (145)
...|||++|...+... =.+.....-.+.|.+.|.
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~ 53 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGH 53 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCC
Confidence 4568999999655321 112233344456777776
No 318
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.94 E-value=14 Score=30.20 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 74 ~~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
..+||++|.+.=. .-.++.|.+.+.+.+++.|+. ++++++
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~e---veiidL 97 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAE---TRIFDP 97 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCE---EEEBCC
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCE---EEEEeh
Confidence 4579999887644 466778888888888888874 555544
No 319
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=28.81 E-value=33 Score=24.51 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+++-|.+.+++.|+. +++++.-... +.+ ...+.||.|++-++
T Consensus 109 ~~~~~~a~~~~~~~~~~--~v~~~~~d~~-~~~------~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 109 KGLQWQARRRLKNLDLH--NVSTRHGDGW-QGW------QARAPFDAIIVTAA 152 (210)
T ss_dssp HHHHHHHHHHHHHTTCC--SEEEEESCGG-GCC------GGGCCEEEEEESSB
T ss_pred HHHHHHHHHHHHHcCCC--ceEEEECCcc-cCC------ccCCCccEEEEccc
Confidence 45888889999998885 5665543332 211 13468999998654
No 320
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=28.71 E-value=1.1e+02 Score=24.24 Aligned_cols=61 Identities=7% Similarity=-0.108 Sum_probs=40.7
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
-.||+||... ......+.+...+.+++.|+. -.....+|--| --.++++. ..+.|+||..+
T Consensus 154 ~~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~--v~~~~~~~~d~--~~~l~~i~-~~~~~vii~~~ 214 (433)
T 4f11_A 154 WKRVGTLTQD--VQRFSEVRNDLTGVLYGEDIE--ISDTESFSNDP--CTSVKKLK-GNDVRIILGQF 214 (433)
T ss_dssp CCEEEEEEES--SHHHHHHHHHHHHHSSSSSCE--EEEEEEESSCC--HHHHHHHH-HTTCCEEEEEC
T ss_pred CcEEEEEEec--chhhHHHHHHHHHHHHHcCce--EEEEeccCcCH--HHHHHHHh-hCCCeEEEEeC
Confidence 4699999885 445667888889999988874 22334556544 33445554 35789888765
No 321
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=28.24 E-value=2.5e+02 Score=23.00 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=33.6
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHH---H---HHHHHhhc--CCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---V---VAQQLGKS--GKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELP---l---aak~La~s--~~yDAVIaLG 142 (145)
+.|+.||..+.=.. ...+...+.|++. + .+..+.+|+.=+=| . +++.+.+. .+.|.||++|
T Consensus 34 ~~k~liVtd~~v~~---~~~~~v~~~L~~~-~---~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalG 102 (368)
T 2gru_A 34 FDQYIMISDSGVPD---SIVHYAAEYFGKL-A---PVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVG 102 (368)
T ss_dssp CSEEEEEEETTSCH---HHHHHHHHHHTTT-S---CEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEE
T ss_pred CCEEEEEECCcHHH---HHHHHHHHHHHhc-c---ceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 45898888654332 2345555566544 3 35556666643222 2 22333333 3589999998
No 322
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=28.15 E-value=1e+02 Score=22.50 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=32.0
Q ss_pred CCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 71 ~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
.+..+.|||++.........+ +.. .++.++.++.. .-+++.| ..|++|+++.-
T Consensus 135 ~dL~g~~i~v~~g~~~~~~l~-----------~~~---~~~~~~~~~~~---~~~l~~L-~~GrvDa~i~~ 187 (267)
T 3mpk_A 135 DHLDGRTVALVRNSAAIPLLQ-----------RRY---PQAKVVTADNP---SEAMLMV-ANGQADAVVQT 187 (267)
T ss_dssp GGCTTCEEEEETTCTHHHHHH-----------HHC---TTSEEEEESSH---HHHHHHH-HHTSCSEEEEE
T ss_pred HHHCCCEEEEeCCchhHHHHH-----------HhC---CCcEEEEeCCH---HHHHHHH-HcCCCCEEEec
Confidence 345688999998765443222 111 14677788874 3344444 46899998863
No 323
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=28.04 E-value=2.1e+02 Score=22.52 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=31.8
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch-----------HHHHHHHHhhcCCCcEEEEee-e
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-----------IGVVAQQLGKSGKYTAVLCIG-A 143 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE-----------LPlaak~La~s~~yDAVIaLG-~ 143 (145)
.||+|+ +.|-..+.+.+ .+.|+++|+. +....-+|-++ +--+++++ ...+.|+|| || |
T Consensus 147 ~rvgvl-tp~~~~~~~~~----~~~l~~~Gi~---v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l-~~~gadaIv-Lg~C 216 (273)
T 2xed_A 147 QRVALV-TPYMRPLAEKV----VAYLEAEGFT---ISDWRALEVADNTEVGCIPGEQVMAAARSL-DLSEVDALV-ISCA 216 (273)
T ss_dssp CEEEEE-ECSCHHHHHHH----HHHHHHTTCE---EEEEEECCCCBHHHHHTCCHHHHHHHHHHS-CCTTCSEEE-EESS
T ss_pred CeEEEE-cCChhhhHHHH----HHHHHHCCCE---EeccccCCCccchhhcccCHHHHHHHHHHH-hhCCCCEEE-EcCC
Confidence 599999 57776655433 4555667863 33334444321 11223333 345788876 55 5
No 324
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=27.93 E-value=32 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=23.0
Q ss_pred CeEEEEecccchH-HHHHHHHhhcCCCcEEEEeee
Q 032216 110 NIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 110 ~I~vv~VPGAfEL-Plaak~La~s~~yDAVIaLG~ 143 (145)
+|....+|-.|+- .-.+..+.+..++|.||++|.
T Consensus 37 ~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~vi~~G~ 71 (216)
T 4gxh_A 37 NIEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQ 71 (216)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eEEEEecCccHHHHHHHHHHHHHhhCCCEEEEecc
Confidence 5777788888863 222333445568999999995
No 325
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=27.88 E-value=53 Score=28.42 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 94 LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 94 leGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
-+.-.+.|+++|++ .++-+||...+|+.-.
T Consensus 15 a~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 44 (590)
T 1ybh_A 15 ADILVEALERQGVE----TVFAYPGGASMEIHQA 44 (590)
T ss_dssp HHHHHHHHHTTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHHcCCC----EEEEcCCCchHHHHHH
Confidence 34557788999997 7899999999998754
No 326
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=27.79 E-value=1.3e+02 Score=22.02 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=37.5
Q ss_pred CCCEEEEEEee---ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 74 EGLRFALVVAR---FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 74 ~~lRIaIVvAr---fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+|++|+.+- ...+|.|.=-.-..+.|++.|... +....||=--+|=-+++++++ .++|.||+-|-
T Consensus 6 ~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v--~~~~iv~Dd~~i~~al~~a~~-~~~DlVittGG 75 (164)
T 3pzy_A 6 TTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSS--AQPEVVADGSPVGEALRKAID-DDVDVILTSGG 75 (164)
T ss_dssp -CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEE--CCCEEECSSHHHHHHHHHHHH-TTCSEEEEESC
T ss_pred CCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEE--EEEEEeCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 35688888753 223333433334456677788753 344557877224444555543 47999999874
No 327
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=27.57 E-value=1.8e+02 Score=22.32 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=19.1
Q ss_pred CCEEEEEEeeecH-HH--HHHHHHHHHHHHHHCCC
Q 032216 75 GLRFALVVARFNE-LV--TKLLLEGALETFKKYSV 106 (145)
Q Consensus 75 ~lRIaIVvArfN~-~I--t~~LleGA~~~L~~~Gv 106 (145)
.|||++|...|.. .. +......-.+.|.+.|.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~ 36 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGH 36 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCC
Confidence 5899999988765 11 11223333456677775
No 328
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=27.35 E-value=1.5e+02 Score=20.22 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=32.0
Q ss_pred ccCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 69 FLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 69 ~l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
++.+.+++|||++....+....+... - +.+.++.++..-| +++.| ..|++|+++.
T Consensus 103 ~~~dL~g~~v~~~~g~~~~~~l~~~~-----------~--~~~~~~~~~~~~~---~~~~l-~~grvDa~~~ 157 (227)
T 3tql_A 103 SKQGLKGKIIGVQGGTTFDSYLQDSF-----------G--NSITIQRYPSEED---ALMDL-TSGRVDAVVG 157 (227)
T ss_dssp STTTTTTCEEEEETTSHHHHHHHHHH-----------G--GGSEEEEESSHHH---HHHHH-TTTSSSEEES
T ss_pred CHHHhCCCEEEEEecccHHHHHHHhc-----------c--ccceEEEcCCHHH---HHHHH-HcCCcCEEEe
Confidence 44456788999987765544322221 1 1156677776433 34443 5789998874
No 329
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=26.89 E-value=44 Score=26.30 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=23.5
Q ss_pred CeEEEEecccchH-HHHHHHHhhcCCCcEEEEeee
Q 032216 110 NIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 110 ~I~vv~VPGAfEL-Plaak~La~s~~yDAVIaLG~ 143 (145)
.|....+|=+|+- .-.+..+.+..++|.||++|.
T Consensus 37 ~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~ 71 (215)
T 3giu_A 37 TIDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQ 71 (215)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred EEEEEEeceehHhHHHHHHHHHHHhCCCEEEEecc
Confidence 4666778888763 233444556678999999985
No 330
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=26.84 E-value=49 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
+.-.+.|+++||+ .++-+||...+|+.-.
T Consensus 15 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 43 (566)
T 1ozh_A 15 DLVVSQLEAQGVR----QVFGIPGAKIDKVFDS 43 (566)
T ss_dssp HHHHHHHHHHTCC----EEEEECCTTTHHHHHH
T ss_pred HHHHHHHHHCCCC----EEEEcCCCchHHHHHH
Confidence 4456788889996 7899999999998754
No 331
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=26.74 E-value=1.6e+02 Score=21.89 Aligned_cols=27 Identities=4% Similarity=0.134 Sum_probs=15.3
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCC
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSV 106 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv 106 (145)
.+++||+|+.... ...+ -++.|++.|+
T Consensus 21 ~~~~~I~il~~~~--~~~~-----~~~~l~~~G~ 47 (219)
T 1q7r_A 21 QSNMKIGVLGLQG--AVRE-----HVRAIEACGA 47 (219)
T ss_dssp CCCCEEEEESCGG--GCHH-----HHHHHHHTTC
T ss_pred CCCCEEEEEeCCC--CcHH-----HHHHHHHCCC
Confidence 3468999995432 2222 1356666675
No 332
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=26.71 E-value=31 Score=24.81 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=21.8
Q ss_pred CEEEEEEeeec-HHHHHHHHHHHHHHHHHC
Q 032216 76 LRFALVVARFN-ELVTKLLLEGALETFKKY 104 (145)
Q Consensus 76 lRIaIVvArfN-~~It~~LleGA~~~L~~~ 104 (145)
|||+||.+.-+ .-.++.|.+...+.|++.
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~ 30 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENS 30 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTC
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHh
Confidence 58888887654 347778888888888876
No 333
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=26.70 E-value=12 Score=33.11 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCe-EEEEecccchHHHHHHHHhh--------cCCCcEEEEeeee
Q 032216 87 ELVTKLLLEGALETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLGK--------SGKYTAVLCIGAV 144 (145)
Q Consensus 87 ~~It~~LleGA~~~L~~~Gv~~e~I-~vv~VPGAfELPlaak~La~--------s~~yDAVIaLG~V 144 (145)
+.+.+++++-..+.|++.|+..++| .++-|=|+-.+|.+-+.+.+ ..+.|-.||.||.
T Consensus 310 ~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa 376 (605)
T 4b9q_A 310 EDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAA 376 (605)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHH
Confidence 3344455556677888888876655 67889999999999887753 2356666777764
No 334
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=26.42 E-value=1.7e+02 Score=21.83 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=25.0
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
+.++|.||.. ||+. ..++.|++.|.+.-......+++-|
T Consensus 14 ~~~~iSII~~-yN~~---~~l~~~l~sl~~sl~~q~~~EiIVV 52 (249)
T 2nxv_A 14 STLMFSVCSL-VRDQ---AKYDRLLESFERFGFTPDKAEFLAA 52 (249)
T ss_dssp CCCSEEEEEE-ESCH---HHHHHHHHHHHHTTCCTTTEEEEEE
T ss_pred CcceEEEEEe-eCCH---HHHHHHHHHHHHhccCCCcEEEEEE
Confidence 3467888876 9985 6788899877653221112566666
No 335
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A
Probab=25.63 E-value=43 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=28.1
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 84 RFNELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 84 rfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
+|.+...+-..+.+.+.|++.|+++++|+.+.+
T Consensus 50 t~e~a~sdLa~~Aa~~AL~~AGi~~~DID~II~ 82 (347)
T 3lma_A 50 NWEMAERKLMEDAVQSALSKQNLKKEDIDIFLA 82 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTCCGGGCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 577777777888889999999999999998876
No 336
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=25.52 E-value=25 Score=29.38 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 92 ~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
....=|++.|++.|+. |=| |+.+..+..+++||+|||.
T Consensus 244 ~iI~Pai~~l~~~gi~--------v~G----P~paDt~F~~~~~D~vlaM 281 (349)
T 4aty_A 244 DITEPVARKLRDDGMT--------VIG----PQGADLLLTNPDIDVFVAM 281 (349)
T ss_dssp HTHHHHHHHHHHC-CC--------EEE----EECHHHHTTCTTCSEEEES
T ss_pred HHHHHHHHHHHHCCCe--------EeC----CCchhhhhccCCCCEEEEc
Confidence 3556788888888863 224 5566666667899999884
No 337
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=25.48 E-value=27 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++.|.+.++..|+. +++.++ +--..++|+ ..+.||.|++.+++
T Consensus 115 ~~~~~~a~~~~~~~~~~-~~~~~~-~~d~~~~~~------~~~~fD~v~~~~~l 160 (297)
T 2o57_A 115 PVQNKRNEEYNNQAGLA-DNITVK-YGSFLEIPC------EDNSYDFIWSQDAF 160 (297)
T ss_dssp HHHHHHHHHHHHHHTCT-TTEEEE-ECCTTSCSS------CTTCEEEEEEESCG
T ss_pred HHHHHHHHHHHHhcCCC-cceEEE-EcCcccCCC------CCCCEeEEEecchh
Confidence 45778888888888874 345544 333445552 24578998887653
No 338
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=25.47 E-value=1e+02 Score=20.83 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=24.0
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
||+.|+...-... |+.+.+...+.|.+.|+. ++++.+
T Consensus 1 mki~iiy~S~~Gn-t~~~a~~i~~~l~~~g~~---v~~~~~ 37 (147)
T 1f4p_A 1 PKALIVYGSTTGN-TEYTAETIARELADAGYE---VDSRDA 37 (147)
T ss_dssp CEEEEEEECSSSH-HHHHHHHHHHHHHHHTCE---EEEEEG
T ss_pred CeEEEEEECCcCH-HHHHHHHHHHHHHhcCCe---eEEEeh
Confidence 5788888766543 667777777777766653 444443
No 339
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=25.33 E-value=48 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
+.-.+.|+++|++ .++-+||...+|+.-.
T Consensus 8 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 36 (563)
T 2uz1_A 8 ELVVRTLIKAGVE----HLFGLHGAHIDTIFQA 36 (563)
T ss_dssp HHHHHHHHHHTCC----CEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHCCCC----EEEECCCCchHHHHHH
Confidence 4456788889996 6889999999998654
No 340
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=25.19 E-value=1e+02 Score=21.84 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=29.0
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.++.|||++....+....+. . .++.++.+++.- -+++.| .+|++|+++.
T Consensus 136 dL~g~~i~~~~g~~~~~~l~~-------------~--~~~~~~~~~~~~---~~~~~l-~~G~vDa~~~ 185 (268)
T 3qax_A 136 LTQYSSVAVQTGTYQEHYLLS-------------Q--PGICVRSFDSTL---EVIMEV-RYGKSPVAVL 185 (268)
T ss_dssp GGGSSCEEEETTSHHHHHHHT-------------S--TTCCEEEESCHH---HHHHHH-HTTSSSEEEE
T ss_pred HhCCCEEEEecCcHHHHHHHh-------------C--CCceEEecCCHH---HHHHHH-HcCCCCEEEe
Confidence 456779998765544332221 1 235566677543 334444 5789999875
No 341
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=25.10 E-value=1.6e+02 Score=19.76 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEec-ccchHHHHHHHH-hhcCCCcEEEE
Q 032216 90 TKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQL-GKSGKYTAVLC 140 (145)
Q Consensus 90 t~~LleGA~~~L~~~Gv~~e~I~vv~VP-GAfELPlaak~L-a~s~~yDAVIa 140 (145)
.+..++.+.+.+++.|+. .++...+. |. ..-.+-.. +++.++|-||.
T Consensus 77 ~~~~l~~~~~~~~~~g~~--~~~~~v~~~g~--~~~~I~~~~a~~~~~DlIV~ 125 (156)
T 3fg9_A 77 VEDVVAEYVQLAEQRGVN--QVEPLVYEGGD--VDDVILEQVIPEFKPDLLVT 125 (156)
T ss_dssp HHHHHHHHHHHHHHHTCS--SEEEEEEECSC--HHHHHHHTHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCC--ceEEEEEeCCC--HHHHHHHHHHHhcCCCEEEE
Confidence 455667777777888883 35555555 63 34445555 66678998764
No 342
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=24.95 E-value=46 Score=24.29 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=33.5
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+..+.|||++....+....+ +.+...|..+ ++++..++.. .-+++.| ..|++|+++.
T Consensus 134 dL~g~~v~v~~g~~~~~~l~-------~~~~~~g~~~-~~~~~~~~~~---~~~~~~l-~~G~vDa~~~ 190 (259)
T 4dz1_A 134 ELNKYSIGYPRGMAYSDLIK-------NDLEPKGYYS-LSKVKLYPTY---NETMADL-KNGNLDLAFI 190 (259)
T ss_dssp GGGGSCEEEETTSTHHHHHH-------HHTGGGTSCC-GGGCEEESSH---HHHHHHH-HHTSCSEEEE
T ss_pred HhCCCEEEEeCCcHHHHHHH-------Hhcccccccc-cceeEecCCH---HHHHHHH-HcCCCCEEEe
Confidence 44678999987665544322 2344556642 2455666643 3344444 4689999886
No 343
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=24.93 E-value=2.1e+02 Score=21.01 Aligned_cols=68 Identities=13% Similarity=-0.019 Sum_probs=40.0
Q ss_pred CCCEEEEEEee-ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch-HHHHHHHHhhcCCCcEEEEeee
Q 032216 74 EGLRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 74 ~~lRIaIVvAr-fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE-LPlaak~La~s~~yDAVIaLG~ 143 (145)
..+|++|+..- =-..+.|.=-.--.+.|+++|+. -+....||=-.| |=-+++.+++++++|.||+-|-
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~--v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHH--VVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCe--EeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 45799988741 01222222223344567778874 345566776654 3345555555557999999884
No 344
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=24.55 E-value=1.2e+02 Score=25.37 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=26.4
Q ss_pred HHHHHHCCCCCC-CeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 98 LETFKKYSVKEE-NIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 98 ~~~L~~~Gv~~e-~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
...|+++|+.++ +++++.+|- |.+++.| ++++.||++.
T Consensus 180 ~~~L~~~Gl~p~~DV~~v~~~~----~~~~~aL-~~G~iDa~~~ 218 (429)
T 2i49_A 180 RYWFAAGGVDPDTDIDLLAVPP----AETVQGM-RNGTMDAFST 218 (429)
T ss_dssp HHHHHHTTCCTTTTSEEEECCH----HHHHHHH-HHTCCCEEEE
T ss_pred HHHHHhcCCCCCCcEEEEECCh----HHHHHHH-HcCCccEEEe
Confidence 346777899886 899998864 3444444 4689999854
No 345
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=24.51 E-value=1.7e+02 Score=21.37 Aligned_cols=68 Identities=18% Similarity=-0.010 Sum_probs=38.2
Q ss_pred CCCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch-HHHHHHHHhhcCCCcEEEEeee
Q 032216 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 74 ~~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE-LPlaak~La~s~~yDAVIaLG~ 143 (145)
..+|++|+..-=- ..+.|.=-.-..+.|++.|+. -+....||=-.| |=-+++.+++..++|.||+-|-
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~--v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHK--VTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCE--EEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCe--EeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4578988874200 112221122233446667874 455667886654 3345555554458999999884
No 346
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=24.47 E-value=2e+02 Score=23.47 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=34.9
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-ecccchHHHHHHH-Hh---------hcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQ-LG---------KSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~-VPGAfELPlaak~-La---------~s~~yDAVIa 140 (145)
+-..+||||+-..=+..-++.++. ..|.. .+.++++.. -++.-|-|-.... |. +..+|||+|.
T Consensus 32 ~irplkI~ILnlmp~k~~te~qf~---rlL~~---~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglII 105 (301)
T 2vdj_A 32 DIRALKIAILNLMPTKQETEAQLL---RLIGN---TPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLII 105 (301)
T ss_dssp TSCCEEEEEECCCSSHHHHHHHHH---HHHTC---SSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEE
T ss_pred CCCCceEEEEeCCCCcCchHHHHH---HHhcC---CCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEE
Confidence 456799999998777765554433 22322 233444432 2555665543222 11 2368999999
Q ss_pred eeee
Q 032216 141 IGAV 144 (145)
Q Consensus 141 LG~V 144 (145)
.|+-
T Consensus 106 TGap 109 (301)
T 2vdj_A 106 TGAP 109 (301)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9973
No 347
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=24.40 E-value=1.2e+02 Score=20.92 Aligned_cols=45 Identities=18% Similarity=-0.001 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+..++.+.+.+...|+. ++...+.|. ..-.+-..++..++|-||.
T Consensus 86 ~~~l~~~~~~~~~~g~~---~~~~v~~G~--~~~~I~~~a~~~~~DLIVm 130 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVG---CEAWIKTGD--PKDVICQEVKRVRPDFLVV 130 (175)
T ss_dssp HHHHHHHHHHHHHHTCE---EEEEEEESC--HHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHCCCc---eEEEEecCC--HHHHHHHHHHHhCCCEEEE
Confidence 34566666677777874 444445663 3344455566668887663
No 348
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=24.11 E-value=1.5e+02 Score=22.56 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++-|.+.+.+.|+. ++++++. |-++ .+ .+.||.|++.+++
T Consensus 105 ~~~~~~a~~~~~~~~~~-~~v~~~~--~d~~------~~--~~~fD~v~~~~~~ 147 (302)
T 3hem_A 105 ENQYAHDKAMFDEVDSP-RRKEVRI--QGWE------EF--DEPVDRIVSLGAF 147 (302)
T ss_dssp HHHHHHHHHHHHHSCCS-SCEEEEE--CCGG------GC--CCCCSEEEEESCG
T ss_pred HHHHHHHHHHHHhcCCC-CceEEEE--CCHH------Hc--CCCccEEEEcchH
Confidence 35788888999988875 3555443 3322 11 5788988887653
No 349
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=23.96 E-value=1.6e+02 Score=23.37 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=37.3
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-c--ccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-P--GSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-P--GAfELPlaak~La~s~~yDAVIaLG 142 (145)
-.||+||. . ++.....++...+.+++.|+. |..... | +.-+.--.++++.+ .+.|+||..+
T Consensus 130 w~~vaii~-d--~~~g~~~~~~~~~~~~~~g~~---v~~~~~~~~~~~~d~~~~l~~ik~-~~~~vii~~~ 193 (389)
T 3o21_A 130 WEKFVYLY-D--TERGFSVLQAIMEAAVQNNWQ---VTARSVGNIKDVQEFRRIIEEMDR-RQEKRYLIDC 193 (389)
T ss_dssp CCEEEEEE-C--STTCSHHHHHHHHHHHHTTCE---EEEEECTTCCCTHHHHHHHHHHHT-TTCCEEEEES
T ss_pred CCEEEEEE-c--CcHHHHHHHHHHHHhhcCCCe---EEEEEecCCCCcHHHHHHHHHHHh-CCCeEEEEEC
Confidence 35999998 2 233445667777888888874 333332 2 44355555666644 4688888754
No 350
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=23.73 E-value=1.3e+02 Score=23.52 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=40.5
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-cccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V-PGAfELPlaak~La~s~~yDAVIaLG 142 (145)
-.||+||. ++.....+++...+.+++.|+. +..... +|.-+.--.++++.+ .+.|+|+..+
T Consensus 138 ~~~v~ii~---d~~~g~~~~~~~~~~~~~~g~~---v~~~~~~~~~~d~~~~l~~i~~-~~~~vi~~~~ 199 (395)
T 3h6g_A 138 WKTVTVVY---DDSTGLIRLQELIKAPSRYNLR---LKIRQLPADTKDAKPLLKEMKR-GKEFHVIFDC 199 (395)
T ss_dssp CSEEEEEE---SSTHHHHHTHHHHTGGGTSSCE---EEEEECCSSGGGGHHHHHHHHH-TTCCEEEEES
T ss_pred CeEEEEEE---EChhHHHHHHHHHHhhhcCCce---EEEEEeCCCchhHHHHHHHHhh-cCCeEEEEEC
Confidence 46999985 3345667888888888888874 322223 465666666676654 4688888764
No 351
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=23.67 E-value=48 Score=25.53 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++.|.+.+.+.|+. ++++++. --..++| +.||.|++.+++
T Consensus 123 ~~~~~~a~~~~~~~~~~-~~v~~~~-~d~~~~~---------~~fD~v~~~~~l 165 (318)
T 2fk8_A 123 KNQHARCEQVLASIDTN-RSRQVLL-QGWEDFA---------EPVDRIVSIEAF 165 (318)
T ss_dssp HHHHHHHHHHHHTSCCS-SCEEEEE-SCGGGCC---------CCCSEEEEESCG
T ss_pred HHHHHHHHHHHHhcCCC-CceEEEE-CChHHCC---------CCcCEEEEeChH
Confidence 45778888888888874 3455442 2233333 578888887653
No 352
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=23.27 E-value=95 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCCCCeEEEEecccchHH
Q 032216 97 ALETFKKYSVKEENIDVVWVPGSFEIG 123 (145)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGAfELP 123 (145)
+.+.|+++|++ ++++..-||.|+-
T Consensus 114 ~r~yf~~~Gi~---~~Ii~l~GsvE~a 137 (219)
T 1o63_A 114 TQRYCESKGWH---CRIIPLKGSVELA 137 (219)
T ss_dssp HHHHHHHHTCC---EEEEECSSCTTHH
T ss_pred HHHHHHHCCCc---eEEEECCCceeec
Confidence 44566678984 8999999999994
No 353
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=23.18 E-value=1.1e+02 Score=22.70 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=29.0
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+.++.|||+.....+.. + |++.| ++++.++.. .-+++.| ..+++|+++.
T Consensus 159 ~~dL~G~~v~v~~g~~~~~----~-------l~~~~-----~~~~~~~~~---~~~~~~l-~~g~vDa~i~ 209 (283)
T 2yln_A 159 IADIKGVKTAQSLTSNYGE----K-------AKAAG-----AQLVPVDGL---AQSLTLI-EQKRADATLN 209 (283)
T ss_dssp GGGCTTSEEEECTTSHHHH----H-------HHHTT-----CEEEECSSH---HHHHHHH-HTTSCCEEEE
T ss_pred HHHhCCCEEEEecCchHHH----H-------HHHcC-----CeEEEeCCH---HHHHHHH-HcCCCCEEEe
Confidence 3355788999765544333 1 22333 356666653 3334444 4789999886
No 354
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=23.13 E-value=50 Score=24.34 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+++.|.+.++..|+. +++++.-.+ ..|+ ...++||.|++-++
T Consensus 124 ~~~~~~a~~~~~~~~~~--~v~~~~~d~--~~~~-----~~~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 124 PELVEFAKRNLERAGVK--NVHVILGDG--SKGF-----PPKAPYDVIIVTAG 167 (235)
T ss_dssp HHHHHHHHHHHHHTTCC--SEEEEESCG--GGCC-----GGGCCEEEEEECSB
T ss_pred HHHHHHHHHHHHHcCCC--CcEEEECCc--ccCC-----CCCCCccEEEECCc
Confidence 35778888888888875 465554333 3222 12346999987654
No 355
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=23.13 E-value=2e+02 Score=20.24 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=30.6
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
+.|||++....+....+.. . .++.++.++..-+ +++.| ..|++|++++-
T Consensus 115 g~~i~v~~g~~~~~~l~~~------------~--~~~~~~~~~~~~~---~~~~L-~~GrvDa~i~~ 163 (245)
T 3k4u_A 115 ELTLVTKFGVSAEYAAKRL------------F--KNAKLKTYDTEAE---AVQEV-LNGKADMFIFD 163 (245)
T ss_dssp SCEEEEETTSHHHHHHHHH------------C--SSSEEEEESSHHH---HHHHH-HSSSSEEEEEE
T ss_pred CcEEEEeCCcHHHHHHHhh------------C--CcCCEEEeCCHHH---HHHHH-HcCCCcEEEEc
Confidence 7899998776554422211 1 2367778886433 44544 47899998863
No 356
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=22.88 E-value=69 Score=22.78 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 92 ~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
.+++.|.+.+...|+. +++++.. -..++| ...+.||.|++.++
T Consensus 73 ~~~~~a~~~~~~~~~~--~~~~~~~-d~~~~~------~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 73 EMVNYAWEKVNKLGLK--NVEVLKS-EENKIP------LPDNTVDFIFMAFT 115 (219)
T ss_dssp HHHHHHHHHHHHHTCT--TEEEEEC-BTTBCS------SCSSCEEEEEEESC
T ss_pred HHHHHHHHHHHHcCCC--cEEEEec-ccccCC------CCCCCeeEEEeehh
Confidence 4778888888888875 5655433 233444 23467999988765
No 357
>2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens}
Probab=22.85 E-value=39 Score=28.65 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=30.2
Q ss_pred eeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEec
Q 032216 83 ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP 117 (145)
Q Consensus 83 ArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP 117 (145)
+..++..++--++.|.+.|++.|+++++|+.+.|-
T Consensus 48 ~~~~E~~~~ma~~Aa~~al~~a~i~~~~Id~ii~a 82 (460)
T 2wya_A 48 CSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVG 82 (460)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 35678899989999999999999999999988773
No 358
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=22.68 E-value=85 Score=23.21 Aligned_cols=46 Identities=7% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~V 144 (145)
..+++.|.+.+...|+. +++.++ +--..++|+ ..+.||.|++.+++
T Consensus 94 ~~~~~~a~~~~~~~~~~-~~~~~~-~~d~~~~~~------~~~~fD~v~~~~~l 139 (273)
T 3bus_A 94 RPQVNQANARATAAGLA-NRVTFS-YADAMDLPF------EDASFDAVWALESL 139 (273)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEE-ECCTTSCCS------CTTCEEEEEEESCT
T ss_pred HHHHHHHHHHHHhcCCC-cceEEE-ECccccCCC------CCCCccEEEEechh
Confidence 45778888888888875 345443 223334442 24578999887653
No 359
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=22.66 E-value=2.3e+02 Score=20.66 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 71 ~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+..+.|||++....+....+. .+...|. ++.++.+++.- -+++.| ..|++|+++.
T Consensus 126 ~dL~g~~v~~~~g~~~~~~l~~-------~~~~~~~---~~~~~~~~~~~---~~~~~L-~~G~vDa~i~ 181 (287)
T 2vha_A 126 ADLKGKAVVVTSGTTSEVLLNK-------LNEEQKM---NMRIISAKDHG---DSFRTL-ESGRAVAFMM 181 (287)
T ss_dssp GGGTTCEEEEETTSHHHHHHHH-------HHHHTTC---CCEEEEESSHH---HHHHHH-HTTSCSEEEE
T ss_pred HHcCCCEEEEeCCCcHHHHHHH-------HhhccCC---CceEEEcCCHH---HHHHHH-HcCCeeEEEe
Confidence 3456789998755444432222 2233444 46677777643 344444 4789999885
No 360
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=22.59 E-value=23 Score=33.34 Aligned_cols=65 Identities=14% Similarity=0.014 Sum_probs=39.0
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEec-----ccchHHHHHHHHhh---cCCCcEEEEee
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-----GSFEIGVVAQQLGK---SGKYTAVLCIG 142 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VP-----GAfELPlaak~La~---s~~yDAVIaLG 142 (145)
...+.||||+.+.--+++ -+...++.|++.|+. ++++..- |+--+++.+..... ...|||||..|
T Consensus 597 ti~grKVaILlaDGfEe~---El~~pvdaLr~AG~~---V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPG 669 (753)
T 3ttv_A 597 DVKGRVVAILLNDEVRSA---DLLAILKALKAKGVH---AKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPC 669 (753)
T ss_dssp CCTTCEEEEECCTTCCHH---HHHHHHHHHHHHTCE---EEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECC
T ss_pred CCCCCEEEEEecCCCCHH---HHHHHHHHHHHCCCE---EEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECC
Confidence 356789999998765553 357788999998973 5554322 22222222222222 23589988776
No 361
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=22.58 E-value=1.3e+02 Score=23.29 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=16.6
Q ss_pred CCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCC
Q 032216 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSV 106 (145)
Q Consensus 73 ~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv 106 (145)
...|||+++.......+.. ++. -.++|++.|.
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~-~~~-la~~L~~~Gh 49 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYP-LLP-LATAARAAGH 49 (412)
T ss_dssp CCSCEEEEECCSSHHHHGG-GHH-HHHHHHHTTC
T ss_pred cceeEEEEEcCCCcccHHH-HHH-HHHHHHHCCC
Confidence 4557777777665555443 222 2334555553
No 362
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=22.55 E-value=73 Score=23.75 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=32.8
Q ss_pred CEEEEEEeee--cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 76 LRFALVVARF--NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 76 lRIaIVvArf--N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
|||.||.+-= ....+.++++.+.+.+ .++++++....+++--..+++. ..|+||-
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~-------~~v~v~dL~~~~D~~~~~~~l~---~aD~iV~ 57 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENF-------SNVTWHPLVADFNVEQEQSLLL---QNDRIIL 57 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTC-------TTEEEEECCTTCCHHHHHHHHH---TCSEEEE
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcC-------CCEEEEECCCcccHHHHHHHHH---hCCEEEE
Confidence 4666666532 3445555555555442 3578888877677666666665 6777763
No 363
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=22.29 E-value=63 Score=23.44 Aligned_cols=24 Identities=4% Similarity=0.220 Sum_probs=10.4
Q ss_pred EEEEEeeecHHHHHHHHHHHHHHHHHC
Q 032216 78 FALVVARFNELVTKLLLEGALETFKKY 104 (145)
Q Consensus 78 IaIVvArfN~~It~~LleGA~~~L~~~ 104 (145)
|.||..-||+. ..++.|++.+.+.
T Consensus 3 vSViIp~yn~~---~~l~~~l~Sl~~q 26 (255)
T 1qg8_A 3 VSVIMTSYNKS---DYVAKSISSILSQ 26 (255)
T ss_dssp EEEEEEESSCT---TTHHHHHHHHHTC
T ss_pred EEEEEEcCCCH---HHHHHHHHHHHhc
Confidence 44444444443 3334444444433
No 364
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=22.28 E-value=67 Score=24.88 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEe---cccch
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWV---PGSFE 121 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~V---PGAfE 121 (145)
+.|..-..+.|++.|+..++|+.+-| ||+|-
T Consensus 36 ~~l~~~i~~~L~~a~~~~~did~Iav~~GPGsft 69 (231)
T 2gel_A 36 QRILPMVQEILAASGASLNEIDALAFGRGPGSFT 69 (231)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEEECCSSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCChhH
Confidence 35666666667888888777777766 99985
No 365
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=22.23 E-value=80 Score=27.09 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
+.-.+.|+++||+ .++-+||...+|+.-.
T Consensus 14 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 42 (568)
T 2c31_A 14 HVLIDALKMNDID----TMYGVVGIPITNLARM 42 (568)
T ss_dssp HHHHHHHHHTTCC----EEEECCCTTTHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEEeCCCccHHHHHH
Confidence 4457888999996 7899999999998543
No 366
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=22.05 E-value=35 Score=23.85 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccch-HHHHHHHHhhcCCCcEEEEe
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE-LPlaak~La~s~~yDAVIaL 141 (145)
..|++-|.+.+++.|+ ++++++. +..+ ++- . ..+.||.|++-
T Consensus 54 ~~~l~~a~~~~~~~~~--~~v~~~~--~~~~~l~~----~-~~~~fD~v~~~ 96 (185)
T 3mti_A 54 EQALGKTSQRLSDLGI--ENTELIL--DGHENLDH----Y-VREPIRAAIFN 96 (185)
T ss_dssp HHHHHHHHHHHHHHTC--CCEEEEE--SCGGGGGG----T-CCSCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCC--CcEEEEe--CcHHHHHh----h-ccCCcCEEEEe
Confidence 3588888888888887 4676665 4433 221 1 14568888653
No 367
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=21.99 E-value=82 Score=26.94 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHHH
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak 127 (145)
+.-.+.|+++||+ .++-+||...+|+.-.
T Consensus 12 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 40 (564)
T 2q28_A 12 HIIVEALKQNNID----TIYGVVGIPVTDMARH 40 (564)
T ss_dssp HHHHHHHHHTTCC----EEEECCCTTTHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEECCCcchHHHHHH
Confidence 4457889999996 7899999999998543
No 368
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=21.97 E-value=1.2e+02 Score=22.86 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=21.7
Q ss_pred cccCCCCCCEEEEEE----eeecHHHHHHHHHHHHHHHHHCCCCCCCeEEE
Q 032216 68 GFLTKNEGLRFALVV----ARFNELVTKLLLEGALETFKKYSVKEENIDVV 114 (145)
Q Consensus 68 g~l~~~~~lRIaIVv----ArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv 114 (145)
|-++-...+|+|+.. ..|.....+.=++.+++.+++.|++ .|++.
T Consensus 13 ~~~~~~~~mklg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~--~vEl~ 61 (290)
T 2zvr_A 13 GLVPRGSHMKLSLVISTSDAAFDALAFKGDLRKGMELAKRVGYQ--AVEIA 61 (290)
T ss_dssp --------CEEEEEECCCC-------CHHHHHHHHHHHHHHTCS--EEEEE
T ss_pred CcCcCCCCceeEEecccchhhccccccccCHHHHHHHHHHhCCC--EEEEc
Confidence 444445568999998 5665433333457788888899985 45554
No 369
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=21.94 E-value=3.7e+02 Score=22.83 Aligned_cols=65 Identities=20% Similarity=0.112 Sum_probs=40.2
Q ss_pred CCCEEEEEEeeec--HHHHHHHHHHHHHHHHHCCCCCCCeEEEEecc-cchHHH-HHHHHhh---------cCCCcEEEE
Q 032216 74 EGLRFALVVARFN--ELVTKLLLEGALETFKKYSVKEENIDVVWVPG-SFEIGV-VAQQLGK---------SGKYTAVLC 140 (145)
Q Consensus 74 ~~lRIaIVvArfN--~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPG-AfELPl-aak~La~---------s~~yDAVIa 140 (145)
...||++|...-+ ......=++|..++|+++|+. +...+.|. .+|-.+ ++++|+. .++.|||.|
T Consensus 155 Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~---~~~~~~~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFa 231 (371)
T 3qi7_A 155 GAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLP---FVQVNTPNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFG 231 (371)
T ss_dssp TCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCC---EEEEEECCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred CCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCC---ceeecCCCCchHHHHHHHHHHHhccccchhhccCCCcEEEE
Confidence 4569999987532 223333359999999999995 33445541 333333 3555442 357899988
Q ss_pred e
Q 032216 141 I 141 (145)
Q Consensus 141 L 141 (145)
.
T Consensus 232 t 232 (371)
T 3qi7_A 232 V 232 (371)
T ss_dssp S
T ss_pred C
Confidence 5
No 370
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=21.84 E-value=24 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=17.2
Q ss_pred CCEEEEEEee-ecHHHHHHHHHHHHHHHHHCCC
Q 032216 75 GLRFALVVAR-FNELVTKLLLEGALETFKKYSV 106 (145)
Q Consensus 75 ~lRIaIVvAr-fN~~It~~LleGA~~~L~~~Gv 106 (145)
++||+|+... |.. .=+.+..+.|++.|+
T Consensus 2 ~~ki~il~~~g~~~----~e~~~~~~~l~~ag~ 30 (168)
T 3l18_A 2 SMKVLFLSADGFED----LELIYPLHRIKEEGH 30 (168)
T ss_dssp CCEEEEECCTTBCH----HHHHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCccH----HHHHHHHHHHHHCCC
Confidence 5688888764 222 223566777777764
No 371
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=21.79 E-value=2.1e+02 Score=19.98 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=33.3
Q ss_pred cCCCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 70 l~~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.+..+.||++.....+....+ +.+.+.|+. +.++.++..- -+++. +..+++|+++.
T Consensus 143 ~~dL~g~~i~~~~g~~~~~~~~-------~~~~~~g~~---~~~~~~~~~~---~~~~~-l~~g~vDa~~~ 199 (259)
T 2v25_A 143 LADMKGANIGVAQAATTKKAIG-------EAAKKIGID---VKFSEFPDYP---SIKAA-LDAKRVDAFSV 199 (259)
T ss_dssp GGGCTTCEEEEETTCSHHHHHH-------HHHHHTTCC---CEEEEESSHH---HHHHH-HHTTSSSEEEE
T ss_pred HHHhCCCEEEEecCCchHHHHH-------HHHHhcCCc---eeEEEeCCHH---HHHHH-HHcCCCcEEEe
Confidence 3455678998864443333222 235566773 4566666543 33343 45789999886
No 372
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=21.71 E-value=18 Score=26.27 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=24.1
Q ss_pred CCEEEEEEeeec-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 75 GLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 75 ~lRIaIVvArfN-~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
.+||.||.+.-+ .-.++.|.+.+.+.++ .|. +++++.+
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~---~v~~~dl 44 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP-PGM---SIELADI 44 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTC---EEEECCC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc-CCC---eEEEEeH
Confidence 478999887764 3467777777777666 454 3444443
No 373
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=21.56 E-value=72 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=33.9
Q ss_pred EEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 80 LVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 80 IVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
++....|+. +++-|.+.++++|+. +.|++..-.| ++.+ ....+||.||..|.
T Consensus 48 V~avDi~~~----al~~A~~N~~~~gl~-~~I~v~~gD~-l~~~------~~~~~~D~Iviagm 99 (244)
T 3gnl_A 48 AIAGEVVDG----PFQSAQKQVRSSGLT-EQIDVRKGNG-LAVI------EKKDAIDTIVIAGM 99 (244)
T ss_dssp EEEEESSHH----HHHHHHHHHHHTTCT-TTEEEEECSG-GGGC------CGGGCCCEEEEEEE
T ss_pred EEEEECCHH----HHHHHHHHHHHcCCC-ceEEEEecch-hhcc------CccccccEEEEeCC
Confidence 555566654 888999999999995 4577664443 3321 11235999887664
No 374
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A
Probab=21.54 E-value=1.3e+02 Score=24.97 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=12.9
Q ss_pred HHhhcCCCcEEEEeee
Q 032216 128 QLGKSGKYTAVLCIGA 143 (145)
Q Consensus 128 ~La~s~~yDAVIaLG~ 143 (145)
++++++.+|.+++.|+
T Consensus 190 ~~I~~G~~d~aLvgG~ 205 (427)
T 3ho9_A 190 RIIAYGDADVMVAGGA 205 (427)
T ss_dssp HHHHHTSCSEEEEEEE
T ss_pred HHHHcCCCCEEEEeee
Confidence 3456899999999886
No 375
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=21.53 E-value=64 Score=25.78 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=36.9
Q ss_pred CEEEEEEeeecHHHHHH---HHHHHHHHHHHCCCCCCCeEEEEec-ccchHHHHHHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKL---LLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~---LleGA~~~L~~~Gv~~e~I~vv~VP-GAfELPlaak~La~s~~yDAVIaLG 142 (145)
.||+||.... ...+. ..+...+.|+++|+.- ......| +.-+.--.++++. .+.|+||..|
T Consensus 155 ~~v~ii~~d~--~~g~~~~~~~~~~~~~~~~~g~~v--~~~~~~~~~~~d~~~~l~~i~--~~~~vii~~~ 219 (441)
T 1jdp_A 155 SRAALVYSDD--KLERNCYFTLEGVHEVFQEEGLHT--SIYSFDETKDLDLEDIVRNIQ--ASERVVIMCA 219 (441)
T ss_dssp CEEEEEEECC--SSSCHHHHHHHHHHHHHHHHTCEE--EEEEECTTSCCCHHHHHHHHH--HHCSEEEEES
T ss_pred cEEEEEEEcC--CcccchHHHHHHHHHHHHhcCcEE--EEEEecCCcccCHHHHHHHhh--cCCcEEEEec
Confidence 5899998752 22223 5566677888888741 1223334 4455555566664 4678888765
No 376
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=21.50 E-value=2.2e+02 Score=22.16 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=38.4
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
-.||+||..... -...| +.+.+.+.+.|.. |.+...||.-+.--.++++.+ .+.|+||..+
T Consensus 139 ~~~vaii~~~~~--~g~~l-~~~~~~~~~~g~~---v~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~ 199 (393)
T 3om0_A 139 YPSASLICAKAE--CLLRL-EELVRGFLISKET---LSVRMLDDSRDPTPLLKEIRD-DKVSTIIIDA 199 (393)
T ss_dssp SCCEEEEESSTT--HHHHT-HHHHHHHHHSSSC---EEEEECC-CCCSHHHHHHHHH-HTCSEEEEES
T ss_pred CcEEEEEEeCch--HHHHH-HHHHHhhhccCCe---EEEEecCCCCCHHHHHHHHHh-cCCeEEEEEC
Confidence 358999997533 34444 5555667778864 555555776666566666654 4678888754
No 377
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=21.48 E-value=2.1e+02 Score=22.26 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=36.0
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHH-HHHHhhcCCCcEEEEee
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV-AQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPla-ak~La~s~~yDAVIaLG 142 (145)
.+|.++++. + +|.+-+.+.+.+++. ..++..+-|.||=-+. ++.+.+.+++|.||+=|
T Consensus 13 ~~ii~i~~~--~----~L~~~~~~i~~e~~~---~~~I~vi~~~le~av~~a~~~~~~~~~dVIISRG 71 (225)
T 2pju_A 13 KPVIWTVSV--T----RLFELFRDISLEFDH---LANITPIQLGFEKAVTYIRKKLANERCDAIIAAG 71 (225)
T ss_dssp CCEEEEECC--H----HHHHHHHHHHTTTTT---TCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEH
T ss_pred CCEEEEEch--H----HHHHHHHHHHHhhCC---CceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCC
Confidence 366666663 2 455556666665554 2455556688884443 45555666799999866
No 378
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=21.41 E-value=89 Score=29.07 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCCCEEEEEEeee-cHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhh---cCCCcEEEEeee
Q 032216 72 KNEGLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGA 143 (145)
Q Consensus 72 ~~~~lRIaIVvArf-N~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~---s~~yDAVIaLG~ 143 (145)
...+.||||+++.- -++ .-+..-++.|++.|+. ++++-.=+. + .+..... +..|||||.-|-
T Consensus 534 ~l~grKVaILvadG~fE~---~El~~p~~aL~~aGa~---V~vVsp~~g-~---GvD~t~~~~~s~~fDAVvlPGG 599 (688)
T 3ej6_A 534 TIATLRVGVLSTTKGGSL---DKAKALKEQLEKDGLK---VTVIAEYLA-S---GVDQTYSAADATAFDAVVVAEG 599 (688)
T ss_dssp CCTTCEEEEECCSSSSHH---HHHHHHHHHHHHTTCE---EEEEESSCC-T---TCCEETTTCCGGGCSEEEECTT
T ss_pred CccCCEEEEEccCCCccH---HHHHHHHHHHHHCCCE---EEEEeCCCC-C---CcccCcccCChhcCcEEEECCC
Confidence 45678999999965 222 2345667899999984 555533111 1 1333222 346999998763
No 379
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=21.41 E-value=2.5e+02 Score=21.26 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=33.7
Q ss_pred EEeeecHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEecccchHHHHHHHH--hhcCCCcEEEEeee
Q 032216 81 VVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVVAQQL--GKSGKYTAVLCIGA 143 (145)
Q Consensus 81 VvArfN~~It~~LleGA~~~L~~~-Gv~~e~I~vv~VPGAfELPlaak~L--a~s~~yDAVIaLG~ 143 (145)
+.....+ .|++.|.+.+.+. |+ .++...+..+..| ++..+.. ...+.||.|+|.-+
T Consensus 86 ~~vD~S~----~ml~~a~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~~~~~~~~~fD~V~~~~~ 144 (292)
T 2aot_A 86 EVVEPSA----EQIAKYKELVAKTSNL--ENVKFAWHKETSS-EYQSRMLEKKELQKWDFIHMIQM 144 (292)
T ss_dssp EEECSCH----HHHHHHHHHHHTCSSC--TTEEEEEECSCHH-HHHHHHHTTTCCCCEEEEEEESC
T ss_pred EEEeCCH----HHHHHHHHHHHhccCC--CcceEEEEecchh-hhhhhhccccCCCceeEEEEeee
Confidence 4444444 5888888888764 44 3677667777655 3221111 12467999998654
No 380
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=21.39 E-value=98 Score=22.03 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEeee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG~ 143 (145)
..+++.|.+.+.+.|+. +++++.-.. +.++ ...+.||.|++.++
T Consensus 112 ~~~~~~a~~~~~~~~~~--~v~~~~~d~--~~~~-----~~~~~fD~v~~~~~ 155 (215)
T 2yxe_A 112 PELAEKAERTLRKLGYD--NVIVIVGDG--TLGY-----EPLAPYDRIYTTAA 155 (215)
T ss_dssp HHHHHHHHHHHHHHTCT--TEEEEESCG--GGCC-----GGGCCEEEEEESSB
T ss_pred HHHHHHHHHHHHHcCCC--CeEEEECCc--ccCC-----CCCCCeeEEEECCc
Confidence 35777888888888874 465544333 2221 12468999998764
No 381
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=21.26 E-value=1.2e+02 Score=20.88 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.++.|||++...... +.|++.+. ++.++.++.. .-+++.| ..+++|+++.
T Consensus 114 dL~g~~i~~~~g~~~~-----------~~l~~~~~---~~~~~~~~~~---~~~~~~l-~~g~vDa~~~ 164 (234)
T 3h7m_A 114 DLRGRKVALHRDGIMH-----------EYLAERGY---GKDLVLTPTP---ADALRLL-AAGGCDYAVV 164 (234)
T ss_dssp GGTTSCEEEETTSHHH-----------HHHHTTTC---GGGEEEESSH---HHHHHHH-HTTSSSEEEE
T ss_pred HhCCCEEEEEeCchHH-----------HHHHhcCC---CceEEEeCCH---HHHHHHH-HcCCceEEEe
Confidence 4567899988654322 23444443 3556667643 3444444 5789999876
No 382
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=21.09 E-value=2.6e+02 Score=20.82 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=12.5
Q ss_pred CEEEEEEeeec--HHHHHHHHHHHHHHHHH
Q 032216 76 LRFALVVARFN--ELVTKLLLEGALETFKK 103 (145)
Q Consensus 76 lRIaIVvArfN--~~It~~LleGA~~~L~~ 103 (145)
.+||++...-+ ...-..+++|+...+++
T Consensus 3 i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~ 32 (346)
T 1usg_A 3 IKVAVVGAMSGPIAQWGDMEFNGARQAIKD 32 (346)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCcchhcCHHHHHHHHHHHHH
Confidence 45666654422 22333444454444443
No 383
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=21.07 E-value=2.1e+02 Score=19.64 Aligned_cols=49 Identities=12% Similarity=-0.060 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCeEEE--EecccchHHHHHHHHhhcCCCcEEEE
Q 032216 87 ELVTKLLLEGALETFKKYSVKEENIDVV--WVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 87 ~~It~~LleGA~~~L~~~Gv~~e~I~vv--~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
.+-.+..++.+.+.+++.|+. +++. ...| +..-++-..++..++|-||.
T Consensus 73 ~~~~~~~l~~~~~~~~~~g~~---~~~~~~v~~G--~~~~~I~~~a~~~~~DLIV~ 123 (155)
T 3dlo_A 73 IIEAKETLSWAVSIIRKEGAE---GEEHLLVRGK--EPPDDIVDFADEVDAIAIVI 123 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---EEEEEEESSS--CHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCC---ceEEEEecCC--CHHHHHHHHHHHcCCCEEEE
Confidence 345667788899999999985 3332 2345 34455666677778998764
No 384
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=21.07 E-value=2.1e+02 Score=22.10 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=31.7
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCC------------------CCCCeEEEEecccchHHHHHHHHhhcCCC
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSV------------------KEENIDVVWVPGSFEIGVVAQQLGKSGKY 135 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv------------------~~e~I~vv~VPGAfELPlaak~La~s~~y 135 (145)
+|.+|||--..-|+.. ++..|++.|+ .+.+++++.++. =++|-++ +++
T Consensus 100 ~G~~Iaip~d~sn~~r-------al~lL~~aGli~l~~~~~~~~t~~dI~~np~~v~~~~l~~-~~~~~al------~~V 165 (241)
T 1xs5_A 100 AGAVIAIPNDSSNEAR-------ALRLLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQEVES-ALLPRVF------DQV 165 (241)
T ss_dssp TTCEEEEECSHHHHHH-------HHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEEECG-GGHHHHG------GGS
T ss_pred CCCEEEEeCCCchHHH-------HHHHHHHCCCEEecCCCCCccChhhhhcCCCceEEEEeCH-HHHHHhh------hcc
Confidence 6789999653333332 5567777887 345677776533 3444433 367
Q ss_pred cEEEE
Q 032216 136 TAVLC 140 (145)
Q Consensus 136 DAVIa 140 (145)
||.+.
T Consensus 166 Daa~i 170 (241)
T 1xs5_A 166 DGAVI 170 (241)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87764
No 385
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=21.06 E-value=1.4e+02 Score=23.24 Aligned_cols=30 Identities=7% Similarity=-0.200 Sum_probs=18.8
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCC
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSV 106 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv 106 (145)
+||+||.-...+. ...+.+...+.|+++|+
T Consensus 6 kki~ii~np~~~~-~~~~~~~i~~~l~~~g~ 35 (292)
T 2an1_A 6 KCIGIVGHPRHPT-ALTTHEMLYRWLCDQGY 35 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHHTTC
T ss_pred cEEEEEEcCCCHH-HHHHHHHHHHHHHHCCC
Confidence 4788887654333 45677888899999987
No 386
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=21.00 E-value=1.1e+02 Score=21.35 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 74 ~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
++.|||++....+....+. . . .++.++.++..-|+ ++.| ..+++|+++.
T Consensus 124 ~g~~v~~~~g~~~~~~l~~-----------~-~--~~~~~~~~~~~~~~---~~~l-~~grvDa~~~ 172 (239)
T 3kbr_A 124 PGVTAIVNPGGTNEKFARA-----------N-L--KKARILVHPDNVTI---FQQI-VDGKADLMMT 172 (239)
T ss_dssp TTCEEEECTTSHHHHHHHH-----------H-C--SSSEEEECCCTTTH---HHHH-HTTSCSEEEE
T ss_pred CCcEEEEcCCCcHHHHHHH-----------h-C--CCCceEEeCCHHHH---HHHH-HcCCcCEEEE
Confidence 3789999877655443221 1 1 23577778866553 3333 5789999885
No 387
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=20.90 E-value=83 Score=22.93 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 92 ~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
.+++-|.+.+++.|+. +++.++.-...-.+|.. ...+.||.|++-+
T Consensus 89 ~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~----~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 89 RRYEEAHKHVKALGLE-SRIELLFGDALQLGEKL----ELYPLFDVLFIDA 134 (233)
T ss_dssp HHHHHHHHHHHHTTCT-TTEEEECSCGGGSHHHH----TTSCCEEEEEEEG
T ss_pred HHHHHHHHHHHHcCCC-CcEEEEECCHHHHHHhc----ccCCCccEEEECC
Confidence 4778888888888874 35666543332223432 1246799988754
No 388
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=20.88 E-value=1.2e+02 Score=23.78 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=28.7
Q ss_pred CEEEEEEeeecH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 76 LRFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 76 lRIaIVvArfN~-~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
|||.||.+.-+. -.+..|.+.+++.|++.|. +++++.+
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~---eV~~~dL 41 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGW---EVVESDL 41 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTC---EEEEEET
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCC---eEEEEEc
Confidence 589999887663 5788899999999988775 3555554
No 389
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=20.76 E-value=88 Score=27.14 Aligned_cols=28 Identities=4% Similarity=0.190 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecccchHHHHH
Q 032216 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVA 126 (145)
Q Consensus 95 eGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaa 126 (145)
+.-.+.|+++|++ .++-+||...+|+.-
T Consensus 8 ~~lv~~L~~~GV~----~vfg~PG~~~~~l~~ 35 (590)
T 1v5e_A 8 LAVMKILESWGAD----TIYGIPSGTLSSLMD 35 (590)
T ss_dssp HHHHHHHHHTTCC----EEEECCCTTTHHHHT
T ss_pred HHHHHHHHHcCCC----EEEEecCCchHHHHH
Confidence 4456788999996 789999999999864
No 390
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=20.62 E-value=1.7e+02 Score=20.33 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=29.5
Q ss_pred CCCCCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 72 ~~~~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+..+.|||++.........+. .+... .+.++.++.. .-+++.| ..|++|+++.
T Consensus 108 dL~g~~v~~~~g~~~~~~l~~-------~~~~~-----~~~~~~~~~~---~~~~~~l-~~G~vDa~~~ 160 (239)
T 1lst_A 108 SLKGKHVGVLQGSTQEAYAND-------NWRTK-----GVDVVAYANQ---DLIYSDL-TAGRLDAALQ 160 (239)
T ss_dssp HHTTCEEEEETTSHHHHHHHH-------HTGGG-----TCEEEEESSH---HHHHHHH-HTTSCSEEEE
T ss_pred HhCCCEEEEEcCccHHHHHHH-------hcccC-----CCeEEEcCCH---HHHHHHH-HcCCCCEEEe
Confidence 446789998765444332221 11112 3466677643 3444444 4789999886
No 391
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=20.61 E-value=67 Score=23.00 Aligned_cols=36 Identities=11% Similarity=0.361 Sum_probs=25.6
Q ss_pred CEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 032216 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (145)
Q Consensus 76 lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~V 116 (145)
.+|.||..-||+. ..++.|++.+.+.-.. +++++-|
T Consensus 5 p~vsViIp~yn~~---~~l~~~l~Sl~~q~~~--~~eiIvv 40 (240)
T 3bcv_A 5 PKVSVIVPIYNVE---KYLDQCVQALLAQTLS--DIEIILI 40 (240)
T ss_dssp CSEEEEEEESSCT---TTHHHHHHHHHTCSSS--SEEEEEE
T ss_pred CcEEEEEecCCCH---HHHHHHHHHHHhCcCC--CeEEEEE
Confidence 4788899999976 6778888888876553 4555544
No 392
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=20.58 E-value=2.7e+02 Score=21.14 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=36.4
Q ss_pred CCEEEEEEee---ecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccch-HHHHHHHHhhcCCCcEEEEeee
Q 032216 75 GLRFALVVAR---FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (145)
Q Consensus 75 ~lRIaIVvAr---fN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfE-LPlaak~La~s~~yDAVIaLG~ 143 (145)
.+|++|+..- ....|.|.--.-..+.|++.|.....+....||=-.| |=-+++.+++..++|.||+-|-
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4577777642 1222333222223445666776411245566776654 3345556665568999999874
No 393
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=20.41 E-value=90 Score=22.25 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=30.0
Q ss_pred CCEEEEEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEE
Q 032216 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 75 ~lRIaIVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIa 140 (145)
+.|||++....+.. .|+++|.. ++.++.++. ..-+++.| ..|++|+++.
T Consensus 124 g~~i~~~~g~~~~~-----------~l~~~~~~--~~~~~~~~~---~~~~~~~l-~~grvDa~i~ 172 (257)
T 2q88_A 124 DAKIGAPGGGTEEK-----------LALEAGVP--RDRVIVVPD---GQSGLKML-QDGRIDVYSL 172 (257)
T ss_dssp TCCEEECTTSHHHH-----------HHHHTTCC--GGGEEECSS---HHHHHHHH-HHTSCSEEEE
T ss_pred CceEEEECCcccHH-----------HHHhcCCC--CceEEEcCC---HHHHHHHH-HcCCCcEEEc
Confidence 67898876554332 34556664 345667775 33445554 4689999886
No 394
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=20.14 E-value=63 Score=26.62 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEee
Q 032216 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (145)
Q Consensus 91 ~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaLG 142 (145)
..|++-|.+.+++.|+ ++++++.-. +.++| .+.||+|++-+
T Consensus 156 ~~~l~~Ar~~~~~~gl--~~v~~v~gD-a~~l~--------d~~FDvV~~~a 196 (298)
T 3fpf_A 156 PDIAELSRKVIEGLGV--DGVNVITGD-ETVID--------GLEFDVLMVAA 196 (298)
T ss_dssp HHHHHHHHHHHHHHTC--CSEEEEESC-GGGGG--------GCCCSEEEECT
T ss_pred HHHHHHHHHHHHhcCC--CCeEEEECc-hhhCC--------CCCcCEEEECC
Confidence 4588999999999998 577776444 45544 36899998643
No 395
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=20.05 E-value=72 Score=23.27 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=31.1
Q ss_pred EEEeeecHHHHHHHHHHHHHHHHHCCCCCCCeEEEEecccchHHHHHHHHhhcCCCcEEEEe
Q 032216 80 LVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (145)
Q Consensus 80 IVvArfN~~It~~LleGA~~~L~~~Gv~~e~I~vv~VPGAfELPlaak~La~s~~yDAVIaL 141 (145)
++.-..++ .+++.|.+.++..|+. ++++++. --+.++| ..+.||.|++-
T Consensus 103 v~~vD~s~----~~~~~a~~~~~~~~~~-~~~~~~~-~d~~~~~-------~~~~~D~v~~~ 151 (241)
T 3gdh_A 103 VIAIDIDP----VKIALARNNAEVYGIA-DKIEFIC-GDFLLLA-------SFLKADVVFLS 151 (241)
T ss_dssp EEEEESCH----HHHHHHHHHHHHTTCG-GGEEEEE-SCHHHHG-------GGCCCSEEEEC
T ss_pred EEEEECCH----HHHHHHHHHHHHcCCC-cCeEEEE-CChHHhc-------ccCCCCEEEEC
Confidence 34445554 5888889999999984 3455443 2233433 45789999974
No 396
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=20.03 E-value=3.1e+02 Score=21.23 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=30.4
Q ss_pred CEEEEEEee--ecHHHHHHHHHHHHHHHHH---CC-C--CCC--CeEEEEecccchHH---HHHHHHhhcCCCcEEEE
Q 032216 76 LRFALVVAR--FNELVTKLLLEGALETFKK---YS-V--KEE--NIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLC 140 (145)
Q Consensus 76 lRIaIVvAr--fN~~It~~LleGA~~~L~~---~G-v--~~e--~I~vv~VPGAfELP---laak~La~s~~yDAVIa 140 (145)
.|||++... -+...-..+.+|+...+++ .| + .-. .++++..--..+-. -++++|.+.+++|+||.
T Consensus 5 i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 5 INVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 467777642 2233444455555444444 22 1 112 34444444433322 23455555667777765
Done!