RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032216
(145 letters)
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A
{Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A
1vsx_A 3jv8_A
Length = 154
Score = 123 bits (310), Expect = 6e-37
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
+ + G L GL+ +VV RFN+ +T LL GA + ++ V +IDV WVPG+FEI
Sbjct: 1 MNIIQGNLV-GTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEI 59
Query: 123 GVVAQQLGKSGKYTAVLCIGAVV 145
A+++ ++ KY A++ +G V+
Sbjct: 60 PFAAKKMAETKKYDAIITLGTVI 82
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin
biosynthesis, transferase; 1.60A {Aquifex aeolicus}
SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Length = 154
Score = 121 bits (306), Expect = 2e-36
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
++ G LT EGLRF +V +RFN + L+EGA++ ++ +EE+I +V VPGS+EI
Sbjct: 1 MQIYEGKLT-AEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEI 59
Query: 123 GVVAQQLGKSGKYTAVLCIGAVV 145
V A +L + AV+ IG ++
Sbjct: 60 PVAAGELARKEDIDAVIAIGVLI 82
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase;
HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Length = 156
Score = 121 bits (305), Expect = 3e-36
Identities = 55/83 (66%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
+ L G++TK + RFA+VVARFNE VT+ L+EGAL+TFKKYSV E +IDVVWVPG++E+
Sbjct: 1 MNELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNE-DIDVVWVPGAYEL 59
Query: 123 GVVAQQLGKSGKYTAVLCIGAVV 145
GV AQ LGKSGKY A++C+GAVV
Sbjct: 60 GVTAQALGKSGKYHAIVCLGAVV 82
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP:
c.16.1.1 PDB: 1t13_A* 1xn1_A
Length = 158
Score = 117 bits (296), Expect = 7e-35
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
+ A + AR++ + + + + +++ VPG++EI + A+ L ++G
Sbjct: 9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTG 68
Query: 134 KYTAVLCIGAVV 145
+Y A++ V+
Sbjct: 69 RYAAIVGAAFVI 80
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral,
flavodoxin like fold, transferase, DMRL riboflavin
biosynthesis, drug targe; 3.50A {Salmonella typhimurium}
PDB: 3mk3_A
Length = 156
Score = 117 bits (296), Expect = 8e-35
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFE 121
+ + + R A+ +ARFN+ + LL+GA++ + VK++NI VVWVPG++E
Sbjct: 1 MNIIKANVA-APDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYE 59
Query: 122 IGVVAQQLGKSGKYTAVLCIGAVV 145
+ + + L KSGKY AV+ +G V+
Sbjct: 60 LPLATEALAKSGKYDAVVALGTVI 83
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis,
ligand binding, transferase; 2.00A {Schizosaccharomyces
pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A*
1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Length = 159
Score = 116 bits (293), Expect = 2e-34
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLGKS 132
LR +V AR N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 16 PELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIAR 75
Query: 133 GKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 76 NTYDAVIGIGVLI 88
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1,
riboflavin S; alpha-beta, transferase; HET: INI; 2.53A
{Mesorhizobium loti}
Length = 157
Score = 116 bits (293), Expect = 2e-34
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
E +R A+V AR++ + + +DV VPG++EI + A+ L ++G
Sbjct: 10 ETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETG 69
Query: 134 KYTAVLCIGAVV 145
+Y AVL VV
Sbjct: 70 RYGAVLGTAFVV 81
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Length = 168
Score = 110 bits (278), Expect = 5e-32
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL---- 129
+R ++ AR+N ++ L++GA+E V+E NI + VPGS+E+ ++
Sbjct: 15 SKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQ 74
Query: 130 -GKSGKYTAVLCIGAVV 145
V+ IG ++
Sbjct: 75 AKLGKPLDVVIPIGVLI 91
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin
biosynthesis, inhibitor binding; HET: TP6; 1.6A
{Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A*
2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Length = 160
Score = 101 bits (253), Expect = 3e-28
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
G+R A+V + ++ + LL+GA + + ++ VV V G+ EI VVAQ+L ++
Sbjct: 16 SGVRLAIVASSWHGKICDALLDGARKVAAGCGL--DDPTVVRVLGAIEIPVVAQELARN- 72
Query: 134 KYTAVLCIGAVV 145
+ AV+ +G V+
Sbjct: 73 -HDAVVALGVVI 83
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ;
3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Length = 200
Score = 94.9 bits (236), Expect = 2e-25
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 36/108 (33%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL---- 129
LR +V AR+NE + + LL G VKE NI V VPGS+E+ + Q+L
Sbjct: 14 SALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSAS 73
Query: 130 --------------------------------GKSGKYTAVLCIGAVV 145
+G + A++ IG ++
Sbjct: 74 QLQTPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLI 121
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1,
transferase; 2.22A {Brucella abortus} PDB: 2f59_A
2o6h_A*
Length = 157
Score = 93.0 bits (232), Expect = 3e-25
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
+ +V ARF + + LL+GA + DVV VPG+ EI
Sbjct: 11 DAPHLLIVEARFYDDLADALLDGAKAALDEAGA---TYDVVTVPGALEIPATISFALDGA 67
Query: 134 -----KYTAVLCIGAVV 145
+Y + +G V+
Sbjct: 68 DNGGTEYDGFVALGTVI 84
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL;
2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Length = 156
Score = 48.4 bits (115), Expect = 5e-08
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
+ +V F + + A++ K+ S I VPG ++ V ++L +
Sbjct: 2 TKKVGIVDTTFARVD---MASIAIKKLKELSPNI-KIIRKTVPGIKDLPVACKKLLEEEG 57
Query: 135 YTAVLCIGAV 144
V+ +G
Sbjct: 58 CDIVMALGMP 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 4e-04
Identities = 30/149 (20%), Positives = 43/149 (28%), Gaps = 48/149 (32%)
Query: 1 MALNLKTTIHHSPLASSSRQFINGF---------SPKPTSMSFSRSS--SLKGFG-TQIA 48
A L I + + + F G S P + S S G Q+A
Sbjct: 191 SAETLSELIRTTL--DAEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCPLIGVIQLA 247
Query: 49 ---IERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVAR------FNELVTKLLLEGALE 99
+ K L F E +L G ++GL A+ +A F V K A+
Sbjct: 248 HYVVTAK-LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK-----AIT 301
Query: 100 TFKKYSVKEENIDVVWVPGSFEIGVVAQQ 128
F IGV +
Sbjct: 302 V------------------LFFIGVRCYE 312
Score = 38.1 bits (88), Expect = 6e-04
Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 61/157 (38%)
Query: 11 HS-----PLASSSRQFINGFSPKPTSMSFSRSSSLK-----GFGTQIAIERKER------ 54
HS LAS + MS S ++ G Q+A+ R E
Sbjct: 1762 HSLGEYAALASLAD-----------VMSIE--SLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 55 ----------LSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEG-------- 96
SF Q EA++++ + K G + + + +N +E
Sbjct: 1809 MIAINPGRVAASFSQ-EALQYVVERVGKRTG--WLVEIVNYN-------VENQQYVAAGD 1858
Query: 97 --ALETFKKY--SVKEENIDVVWVPGSFEIGVVAQQL 129
AL+T +K + ID++ + S + V L
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 29.6 bits (66), Expect = 0.38
Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 62/176 (35%)
Query: 1 MALNLKTTIHHSPLASS-----SRQFIN--GFSP------KPTSMSFSRSSSLKGFGTQI 47
M ++L T S A F + GFS P +++ FG +
Sbjct: 1631 MGMDLYKT---SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-------FGGEK 1680
Query: 48 AIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEG----------- 96
+E S + E + L+ + NE T
Sbjct: 1681 GKRIRENYSAMIFET--------IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 97 --ALET-----FKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS-GKYTAVLCIGAV 144
AL F+ +K + + +P A G S G+Y A+ + V
Sbjct: 1733 QPALTLMEKAAFED--LKSKGL----IPADA---TFA---GHSLGEYAALASLADV 1776
>3bjo_A Uncharacterized ATP-binding protein MJ1010; APC87992.1, structur
genomics, PSI-2; 2.05A {Methanocaldococcus jannaschii
dsm 2661ORGANISM_TAXID}
Length = 103
Score = 25.8 bits (56), Expect = 3.2
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 52 KERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFK-KYSVKEEN 110
K+ L+ + + + L FL+ + ++ + + + K + AL+ FK KY ++ +
Sbjct: 5 KDVLNILLMDEISKLKDFLSNLDYIKPKVNIEEEIIEIRKEDIINALKLFKGKYEIEVDK 64
Query: 111 ID 112
I
Sbjct: 65 IP 66
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 26.5 bits (58), Expect = 3.7
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 21 FINGFSPKPTSMSFSRSSSLKGFGTQIAIERKER---LSFVQTE 61
+ F PK ++S S + F I I + + Q
Sbjct: 140 LVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYG 183
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 26.1 bits (58), Expect = 3.9
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 13 PLASSSRQ--FINGFSPKPTSMSFSRSSSLKGFGTQIAI 49
+ + + + F PK ++ S + F I I
Sbjct: 131 VMKNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVI 169
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 26.2 bits (58), Expect = 5.0
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 83 ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142
R + E K+ NI + + G FE +L + K LCI
Sbjct: 470 KRTLPKKS---FEQISANITKF-----NIQGLVIIGGFEAYTGGLELMEGRKQFDELCIP 521
Query: 143 AVV 145
VV
Sbjct: 522 FVV 524
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY,
DNA-binding, nucleotide-binding, transcript regulation,
winged HTH motif.; 2.90A {Bacillus subtilis} SCOP:
a.4.5.66
Length = 102
Score = 25.0 bits (54), Expect = 5.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 55 LSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKE 108
LS+ + EA+ H+ L NEGL A +A +T+ ++ AL + V E
Sbjct: 22 LSYSELEAIEHIFEELDGNEGLLVASKIAD-RVGITRSVIVNALRKLESAGVIE 74
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 25.9 bits (58), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 124 VVAQQLGKSGKYTAVLCIGA 143
VA Q ++GK L IG+
Sbjct: 127 SVADQFIRAGKVKKALVIGS 146
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 25.9 bits (58), Expect = 6.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 124 VVAQQLGKSGKYTAVLCIGA 143
VA Q KSG L +G+
Sbjct: 120 SVADQYVKSGAVKYALVVGS 139
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 25.5 bits (57), Expect = 6.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 124 VVAQQLGKSGKYTAVLCIGA 143
+A++L SG+Y L IG
Sbjct: 121 SMAEKLVLSGRYQTGLVIGG 140
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 25.5 bits (57), Expect = 6.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 125 VAQQLGKSGKYTAVLCIGA 143
+A KSGK VL IGA
Sbjct: 120 IADSFIKSGKAKNVLVIGA 138
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 25.6 bits (57), Expect = 6.8
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 12 SPLASSSRQ----------FINGFSPKPTSMSFSRSSSLKGFGTQ 46
PLA S + G+ P+P +++++ S G T
Sbjct: 347 YPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF 391
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 25.6 bits (57), Expect = 7.5
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 125 VAQQLGKSGKYTAVLCIGA 143
+A+ +G VL +
Sbjct: 144 MARGQILAGLARHVLVVCG 162
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 25.5 bits (57), Expect = 8.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 124 VVAQQLGKSGKYTAVLCIGA 143
A +SG++ L IGA
Sbjct: 135 ATADSFIRSGQHRTALVIGA 154
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY
crystallography, protein structure, ABC transport
systems, transport protein; 1.53A {Escherichia coli}
SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A
1z17_A 1z18_A 2liv_A
Length = 346
Score = 25.3 bits (56), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 106 VKEENIDVVWVPGSF-EIGVVAQQLGKSG 133
+K+ENID V+ G + E+G + +Q G
Sbjct: 189 LKKENIDFVYYGGYYPEMGQMLRQARSVG 217
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap
domain, transport protein; 1.30A {Agrobacterium
tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Length = 356
Score = 25.3 bits (56), Expect = 8.6
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 106 VKEENIDVVWVPGSF-EIGVVAQQLGKSG 133
+KE + +++ G E G++ +Q G
Sbjct: 189 MKEAGVSIIYWGGLHTEAGLIIRQAADQG 217
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 25.2 bits (56), Expect = 8.7
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 124 VVAQQLGKSGKYTAVLCIGA 143
+A +SG VL +
Sbjct: 129 SIAADAVESGGSRHVLVVAT 148
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 25.1 bits (56), Expect = 8.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 124 VVAQQLGKSGKYTAVLCIGA 143
+ A+Q +SG Y +L +GA
Sbjct: 120 ITAKQYVQSGDYHNILVVGA 139
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 25.4 bits (56), Expect = 8.8
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNE---LVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119
+ + + FL + G +ALVV ++ + + +V +NI
Sbjct: 50 INYYSDFLYCSFGRPYALVVTE-DDVISISANIDGGQPWRR----TVGTDNIVYTDWQRD 104
Query: 120 FEIGVVAQQLGKSGK 134
+ Q L K+ +
Sbjct: 105 NYFAAIQQALPKARR 119
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 25.2 bits (56), Expect = 9.5
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 124 VVAQQLGKSGKYTAVLCIGA 143
L +G + L +G
Sbjct: 120 ASVGSLISAGLADSALLVGV 139
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 25.1 bits (56), Expect = 9.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 125 VAQQLGKSGKYTAVLCIGA 143
A L ++G VL +GA
Sbjct: 119 QAHALVEAGLAQKVLAVGA 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.370
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,098,699
Number of extensions: 116316
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 46
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)