RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032216
(145 letters)
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 155
Score = 76.2 bits (187), Expect = 5e-19
Identities = 54/83 (65%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
+ L G++TK + RFA+VVARFNE VT+ L+EGAL+TFKKYSV E+ DVVWVPG++E+
Sbjct: 1 MNELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDI-DVVWVPGAYEL 59
Query: 123 GVVAQQLGKSGKYTAVLCIGAVV 145
GV AQ LGKSGKY A++C+GAVV
Sbjct: 60 GVTAQALGKSGKYHAIVCLGAVV 82
>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus
(Magnaporthe grisea) [TaxId: 148305]}
Length = 195
Score = 76.7 bits (188), Expect = 7e-19
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
LR +V AR+NE + + LL G VKE NI V VPGS+E+ + Q+L +
Sbjct: 10 SALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSAS 69
Query: 134 KYTA 137
+
Sbjct: 70 QLQT 73
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId:
63363]}
Length = 154
Score = 70.4 bits (172), Expect = 6e-17
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
EGLRF +V +RFN + L+EGA++ ++ +EE+I +V VPGS+EI V A +L +
Sbjct: 11 EGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKE 70
Query: 134 KYTAVLCIGAVV 145
AV+ IG ++
Sbjct: 71 DIDAVIAIGVLI 82
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 70.8 bits (173), Expect = 7e-17
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL---- 129
+R ++ AR+N ++ L++GA+E V+E NI + VPGS+E+ ++
Sbjct: 15 SKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQ 74
Query: 130 -GKSGKYTAVLCIGAVV 145
V+ IG ++
Sbjct: 75 AKLGKPLDVVIPIGVLI 91
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 150
Score = 68.5 bits (167), Expect = 3e-16
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLGKS 132
LR +V AR N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 8 PELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIAR 67
Query: 133 GKYTAVLCIGAVV 145
Y AV+ IG ++
Sbjct: 68 NTYDAVIGIGVLI 80
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId:
1423]}
Length = 154
Score = 68.1 bits (166), Expect = 4e-16
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
GL+ +VV RFN+ +T LL GA + ++ V +IDV WVPG+FEI A+++ ++
Sbjct: 11 TGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETK 70
Query: 134 KYTAVLCIGAVV 145
KY A++ +G V+
Sbjct: 71 KYDAIITLGTVI 82
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId:
235]}
Length = 148
Score = 67.7 bits (165), Expect = 6e-16
Identities = 14/71 (19%), Positives = 35/71 (49%)
Query: 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
+ A + AR++ + + + + +++ VPG++EI + A+ L ++G+
Sbjct: 2 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGR 61
Query: 135 YTAVLCIGAVV 145
Y A++ V+
Sbjct: 62 YAAIVGAAFVI 72
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional
pleiotropic repressor CodY, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 91
Score = 25.5 bits (56), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 46 QIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVA 83
Q+AI LS+ + EA+ H+ L NEGL A +A
Sbjct: 7 QMAISS---LSYSELEAIEHIFEELDGNEGLLVASKIA 41
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate
dehydrogenase domain 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 24.3 bits (52), Expect = 3.5
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 21 FINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFA 79
+I G P + + + L F + + H G +TK + F
Sbjct: 20 WIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVTKAGLILFG 78
>d1k0ra4 d.202.1.1 (A:-4-99) Transcription factor NusA, N-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 104
Score = 24.3 bits (53), Expect = 3.7
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 94 LEGALET-FKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
++ AL T ++ + + + + + V+A++
Sbjct: 31 IKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARET 67
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
calgranulin C, s100a12 [TaxId: 9606]}
Length = 87
Score = 23.6 bits (51), Expect = 5.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 90 TKLL--LEGALETFKKYSVKEEN 110
TKL LEG + F +YSV++ +
Sbjct: 1 TKLEEHLEGIVNIFHQYSVRKGH 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.370
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,331
Number of extensions: 20159
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 15
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)