BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032220
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
+P P D P +S LA + A EA P K+T G + + R E+E + RA
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212
Query: 104 ESEKSQAENKAH 115
E+EKS ++ +
Sbjct: 213 EAEKSFGNSEVY 224
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
+P P D P +S LA + A EA P K+T G + + R E+E + RA
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212
Query: 104 ESEKSQAENKAH 115
E+EKS ++ +
Sbjct: 213 EAEKSFGNSEVY 224
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
+P P D P +S LA + A EA P K+T G + + R E+E + RA
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212
Query: 104 ESEKSQAENKAH 115
E+EKS ++ +
Sbjct: 213 EAEKSFGNSEVY 224
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
+P P D P +S LA + A EA P K+T G + + R E+E + RA
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212
Query: 104 ESEKSQAENKAH 115
E+EKS ++ +
Sbjct: 213 EAEKSFGNSEVY 224
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
+P P D P +S LA + A EA P K+T G + + R E+E + RA
Sbjct: 131 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 189
Query: 104 ESEKSQAENKAH 115
E+EKS ++ +
Sbjct: 190 EAEKSFGNSEVY 201
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
+P P D P +S LA + A EA P K+T G + + R E+E + RA
Sbjct: 131 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 189
Query: 104 ESEKSQAENKAH 115
E+EKS ++ +
Sbjct: 190 EAEKSFGNSEVY 201
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
+P P D P +S LA + A EA P K+T G + + R E+E + RA
Sbjct: 131 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 189
Query: 104 ESEKSQAENKAH 115
E+EKS ++ +
Sbjct: 190 EAEKSFGNSEVY 201
>pdb|1PM7|A Chain A, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose
3,5-Epimerase)structure From Mycobacterium Tuberculosis
And Inhibitor Design. The Apo Structure.
pdb|1PM7|B Chain B, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose
3,5-Epimerase)structure From Mycobacterium Tuberculosis
And Inhibitor Design. The Apo Structure.
pdb|2IXC|A Chain A, Rmlc M. Tuberculosis With Dtdp-Rhamnose
pdb|2IXC|B Chain B, Rmlc M. Tuberculosis With Dtdp-Rhamnose
pdb|2IXC|C Chain C, Rmlc M. Tuberculosis With Dtdp-Rhamnose
pdb|2IXC|D Chain D, Rmlc M. Tuberculosis With Dtdp-Rhamnose
Length = 202
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 32/78 (41%)
Query: 37 VADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRI 96
+ D+ TV+ AE P+ + D + P + + +RDA E +
Sbjct: 124 LQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRAS 183
Query: 97 SLIRAWEESEKSQAENKA 114
L+ WE++++ E +
Sbjct: 184 GLLPRWEQTQRFIGEMRG 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.301 0.119 0.315
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,028,412
Number of Sequences: 62578
Number of extensions: 99639
Number of successful extensions: 201
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 17
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.7 bits)