BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032220
         (145 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1
          Length = 198

 Score =  125 bits (314), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 110/147 (74%), Gaps = 20/147 (13%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENK
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENK 107

Query: 114 AHKKLSSIVSWENSRKAAVEAELKKIE 140
           A KK+S+I +WENS+KA +EAELKK+E
Sbjct: 108 AQKKVSAIGAWENSKKANLEAELKKME 134


>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1
          Length = 190

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 16/138 (11%)

Query: 1   MAEEE-PKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKAL 59
           MAEE+   K++ E+P    P     PA       P +VAD+K  I +PP    P ESKAL
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPA-------PVEVADEK--IHNPP----PVESKAL 47

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLS 119
           AVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S
Sbjct: 48  AVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKIS 105

Query: 120 SIVSWENSRKAAVEAELK 137
            + +WENS+KAAVEA+L+
Sbjct: 106 DVHAWENSKKAAVEAQLR 123


>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana
           GN=At3g61260 PE=1 SV=1
          Length = 212

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EK
Sbjct: 47  KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEK 102

Query: 95  RISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
           R+S +RAWEESEKS+AENKA KK++ + +WENS+KAAVEA+LKKIE
Sbjct: 103 RLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIE 148


>sp|Q9WUN8|LBX2_MOUSE Transcription factor LBX2 OS=Mus musculus GN=Lbx2 PE=2 SV=1
          Length = 195

 Score = 32.3 bits (72), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 24  EPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNR 83
           +PA+P  A   +++A    +  SP A  +P E +A      APEA P  G        +R
Sbjct: 37  DPASPLCAL--EELASKTFLGHSPRATPQPSEGRA------APEAPPGPGAGVRRRRKSR 88

Query: 84  DAVLAR--VETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEV 141
            A  A+  +E E+R    +    SE+     +     + +V+W  +R+A ++ +++++  
Sbjct: 89  TAFTAQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLKRDVEEMRA 148

Query: 142 NV 143
           +V
Sbjct: 149 DV 150


>sp|A0R006|WAG31_MYCS2 Cell wall synthesis protein Wag31 OS=Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155) GN=wag31 PE=1 SV=1
          Length = 272

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 11/133 (8%)

Query: 12  ETPTEPPPPPSTEPAAPAA--AEPPKDVADDKTVIPSPPAEDKPEESKALA---VVDKAP 66
           E P +P  P S + A  AA      +D AD  T      A+    +++A A   V D   
Sbjct: 96  EAPAQPAAPQSEDTAVRAARVLSLAQDTADRLTSTAKAEADKLLSDARAQAEAMVSDARQ 155

Query: 67  EAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWEN 126
            AE    E         DA+LA  +T     L +A E+++  QA+  A +K S I+   N
Sbjct: 156 TAETTVSEARQRA----DAMLADAQTRSEAQLRQAQEKADALQAD--AERKHSEIMGTIN 209

Query: 127 SRKAAVEAELKKI 139
            ++  +E  L+++
Sbjct: 210 QQRTVLEGRLEQL 222


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.299    0.119    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,517,720
Number of Sequences: 539616
Number of extensions: 2673010
Number of successful extensions: 38670
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 1649
Number of HSP's that attempted gapping in prelim test: 22756
Number of HSP's gapped (non-prelim): 11111
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.8 bits)