Query 032220
Match_columns 145
No_of_seqs 76 out of 78
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p2u_A HOST-nuclease inhibitor 33.7 1.3E+02 0.0043 22.7 6.5 39 94-132 41-79 (171)
2 3sjd_D Golgi to ER traffic pro 17.3 1.4E+02 0.0047 19.2 3.3 37 78-124 10-46 (46)
3 3lvh_D LCB, clathrin light cha 17.0 1.5E+02 0.005 24.1 4.2 45 97-141 100-144 (205)
4 3ljm_A Coil Ser L9C; de novo d 13.9 1.1E+02 0.0037 18.1 2.0 15 130-144 11-25 (31)
5 2p2u_A HOST-nuclease inhibitor 13.4 3.8E+02 0.013 20.0 5.5 52 82-143 17-68 (171)
6 2kw3_C Regulatory factor X-ass 9.8 88 0.003 21.2 0.7 24 77-100 7-30 (62)
7 3lvg_D LCB, clathrin light cha 9.8 3.3E+02 0.011 21.8 4.2 36 97-132 85-120 (190)
8 3myu_A High affinity transport 9.4 1.5E+02 0.005 25.7 2.1 14 92-105 162-175 (344)
9 1nwd_B GAD, glutamate decarbox 8.6 2E+02 0.0068 16.6 1.8 13 92-104 8-20 (28)
10 1pei_A PEPC22; transferase, nu 8.6 85 0.0029 18.0 0.2 14 93-106 4-17 (26)
No 1
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=33.74 E-value=1.3e+02 Score=22.72 Aligned_cols=39 Identities=8% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHhhhhhhhH
Q 032220 94 KRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAV 132 (145)
Q Consensus 94 Kr~slIkAWEEsEKaKaeNka~kk~s~I~aWEnskKA~~ 132 (145)
.....|+.|...+-..+.|+...-.+.|+.|=...+..+
T Consensus 41 ~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~el 79 (171)
T 2p2u_A 41 EAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEM 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 445667888888888888888888888888877665543
No 2
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=17.29 E-value=1.4e+02 Score=19.17 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=20.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHH
Q 032220 78 EGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSW 124 (145)
Q Consensus 78 ~gs~drD~~Larve~EKr~slIkAWEEsEKaKaeNka~kk~s~I~aW 124 (145)
-||--++.--+|+-.|+|..-|++ ..+...|.+|+.|
T Consensus 10 ~~~~lsa~EkaRLrRERR~aKi~~----------G~assRLNkItg~ 46 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRERRQKKFSN----------GGASSRLNKITGW 46 (46)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH----------HTHHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHHHHHHHc----------cchHHHHHHHhcC
Confidence 355556667778888888766543 1255667788888
No 3
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=17.04 E-value=1.5e+02 Score=24.12 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHhhhhhhhHHHHHHhhhh
Q 032220 97 SLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEV 141 (145)
Q Consensus 97 slIkAWEEsEKaKaeNka~kk~s~I~aWEnskKA~~EAeLkKiEe 141 (145)
.-|+-|.|..+..++-|-......-..|...-|..++-=.+.+.+
T Consensus 100 EsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yne 144 (205)
T 3lvh_D 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 144 (205)
T ss_dssp THHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888887777776665555555555555544444433333333
No 4
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=13.86 E-value=1.1e+02 Score=18.05 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=8.8
Q ss_pred hhHHHHHHhhhhhcC
Q 032220 130 AAVEAELKKIEVNVN 144 (145)
Q Consensus 130 A~~EAeLkKiEeklE 144 (145)
+.+|.+|.-+|.+||
T Consensus 11 aalesklqalekkle 25 (31)
T 3ljm_A 11 AALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665554
No 5
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=13.42 E-value=3.8e+02 Score=20.03 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHhhhhhhhHHHHHHhhhhhc
Q 032220 82 NRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNV 143 (145)
Q Consensus 82 drD~~Larve~EKr~slIkAWEEsEKaKaeNka~kk~s~I~aWEnskKA~~EAeLkKiEekl 143 (145)
+-|.+|.++..- ..+...+++-+..++..|..|....-+.+.+++..++-.|
T Consensus 17 ~~~~alr~ia~l----------~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l 68 (171)
T 2p2u_A 17 QAEGALAEIATI----------DRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666444 4466778888899999999999988888888887776544
No 6
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=9.82 E-value=88 Score=21.19 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=18.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 032220 77 TEGSVNRDAVLARVETEKRISLIR 100 (145)
Q Consensus 77 ~~gs~drD~~Larve~EKr~slIk 100 (145)
.|.+.-|--+|.-|-.+||+||++
T Consensus 7 ~Gd~~~rp~l~eqVLNqKk~SLLR 30 (62)
T 2kw3_C 7 FGDRPARPTLLEQVLNQKRLSLLR 30 (62)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCccHHHHHHHHHHHHHhc
Confidence 344555667899999999999974
No 7
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=9.76 E-value=3.3e+02 Score=21.84 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhHHhhhhhhhH
Q 032220 97 SLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAV 132 (145)
Q Consensus 97 slIkAWEEsEKaKaeNka~kk~s~I~aWEnskKA~~ 132 (145)
.-|+.|.|-.+..++-|.......-..|-..-|..+
T Consensus 85 EsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKEL 120 (190)
T 3lvg_D 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL 120 (190)
T ss_dssp THHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 357888877766666654444444444443333333
No 8
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=9.37 E-value=1.5e+02 Score=25.66 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 032220 92 TEKRISLIRAWEES 105 (145)
Q Consensus 92 ~EKr~slIkAWEEs 105 (145)
.++|..||+|||+-
T Consensus 162 ~e~~~~Ivnawe~k 175 (344)
T 3myu_A 162 ASEITAIKKAWNEK 175 (344)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccc
Confidence 47888899999973
No 9
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=8.62 E-value=2e+02 Score=16.58 Aligned_cols=13 Identities=31% Similarity=0.859 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 032220 92 TEKRISLIRAWEE 104 (145)
Q Consensus 92 ~EKr~slIkAWEE 104 (145)
+|-+|.+|.||.-
T Consensus 8 sevqlemitawkk 20 (28)
T 1nwd_B 8 SEVQLEMITAWKK 20 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4667888999953
No 10
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=8.59 E-value=85 Score=18.04 Aligned_cols=14 Identities=57% Similarity=0.997 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 032220 93 EKRISLIRAWEESE 106 (145)
Q Consensus 93 EKr~slIkAWEEsE 106 (145)
|+|..||.-||+--
T Consensus 4 e~~~eliskWe~kS 17 (26)
T 1pei_A 4 EKSIDLIQKWEEKS 17 (26)
T ss_dssp SHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 56777777787643
Done!