Query 032220
Match_columns 145
No_of_seqs 76 out of 78
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 18:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032220.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032220hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1is1a_ d.67.3.1 (A:) Ribosome 13.6 1.5E+02 0.011 20.7 5.2 37 90-126 105-144 (185)
2 d1dd5a_ d.67.3.1 (A:) Ribosome 13.2 1.8E+02 0.013 20.3 5.5 34 92-125 106-142 (184)
3 d1eh1a_ d.67.3.1 (A:) Ribosome 11.5 1.7E+02 0.012 20.5 4.9 35 92-126 108-145 (185)
4 d1wqga1 d.67.3.1 (A:2-184) Rib 9.0 2.6E+02 0.019 19.3 5.2 35 91-125 105-142 (183)
5 d2hsja1 c.23.10.3 (A:1-211) Un 6.1 2.3E+02 0.017 18.4 3.4 23 95-117 2-24 (211)
6 d3cgha1 a.118.8.6 (A:31-537) U 6.0 2.5E+02 0.018 20.5 3.8 30 79-108 410-443 (507)
7 d1g2ra_ d.192.1.1 (A:) Hypothe 4.2 4.5E+02 0.033 16.2 4.2 43 101-144 52-94 (94)
8 d1px5a1 a.160.1.2 (A:201-346) 3.6 2.8E+02 0.02 19.3 2.4 32 96-127 8-43 (146)
9 d1zswa2 d.32.1.10 (A:145-314) 3.1 1E+02 0.0075 20.1 -0.4 19 123-141 151-169 (170)
10 d2reta1 d.24.1.7 (A:30-110) Ps 2.9 5.3E+02 0.038 15.2 3.0 18 83-100 6-23 (81)
No 1
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=13.57 E-value=1.5e+02 Score=20.69 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHh--hhhhhHHhh
Q 032220 90 VETEKRISLI-RAWEESEKSQAENKAHKK--LSSIVSWEN 126 (145)
Q Consensus 90 ve~EKr~slI-kAWEEsEKaKaeNka~kk--~s~I~aWEn 126 (145)
+-.|.|..|+ .+++..|++|..=|-.|. ...|..++.
T Consensus 105 lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k 144 (185)
T d1is1a_ 105 LTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLK 144 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3467888888 578888888887666655 333555543
No 2
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=13.17 E-value=1.8e+02 Score=20.31 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=21.2
Q ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHhhh--hhhHHh
Q 032220 92 TEKRISLI-RAWEESEKSQAENKAHKKLS--SIVSWE 125 (145)
Q Consensus 92 ~EKr~slI-kAWEEsEKaKaeNka~kk~s--~I~aWE 125 (145)
.|.|..|+ .+++..|++|..=|-.|.-. .|..++
T Consensus 106 ~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~ 142 (184)
T d1dd5a_ 106 TEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQ 142 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777777 56777777777666654433 444443
No 3
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=11.47 E-value=1.7e+02 Score=20.47 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHh--hhhhhHHhh
Q 032220 92 TEKRISLI-RAWEESEKSQAENKAHKK--LSSIVSWEN 126 (145)
Q Consensus 92 ~EKr~slI-kAWEEsEKaKaeNka~kk--~s~I~aWEn 126 (145)
.|.|..|+ .+++-.|++|..=|-.|. +..|..+++
T Consensus 108 ~E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k 145 (185)
T d1eh1a_ 108 EERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAK 145 (185)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45667777 567777777776666554 345555543
No 4
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.03 E-value=2.6e+02 Score=19.31 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=23.5
Q ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHh--hhhhhHHh
Q 032220 91 ETEKRISLI-RAWEESEKSQAENKAHKK--LSSIVSWE 125 (145)
Q Consensus 91 e~EKr~slI-kAWEEsEKaKaeNka~kk--~s~I~aWE 125 (145)
-.|.|..|+ .+++-.|++|..=|..|. ...|..++
T Consensus 105 T~E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~ 142 (183)
T d1wqga1 105 TEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIR 142 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367788888 578888888887766654 33455554
No 5
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=6.13 E-value=2.3e+02 Score=18.40 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Q 032220 95 RISLIRAWEESEKSQAENKAHKK 117 (145)
Q Consensus 95 r~slIkAWEEsEKaKaeNka~kk 117 (145)
+..++.+|-..+..|+.+++++.
T Consensus 2 ~~~~~~~w~~~~~~~~~~~~~~~ 24 (211)
T d2hsja1 2 AVQLLENWLLKEQEKIQTKYRHL 24 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999888899999988663
No 6
>d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=6.01 E-value=2.5e+02 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=24.4
Q ss_pred CchhHHHHHHHHHHHHHHHHH----HHHHHHHHh
Q 032220 79 GSVNRDAVLARVETEKRISLI----RAWEESEKS 108 (145)
Q Consensus 79 gs~drD~~Larve~EKr~slI----kAWEEsEKa 108 (145)
++...+..|..|.++||++|. -+|-+-.++
T Consensus 410 ~~~s~~~~L~~I~~Qk~ia~~~~g~e~w~d~RRt 443 (507)
T d3cgha1 410 DSADKEEKQERIIVQKWIANWQLGNEAWADFRRT 443 (507)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHcCChhhHHHHHHcc
Confidence 445578899999999999985 689887775
No 7
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=4.18 E-value=4.5e+02 Score=16.23 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhHHhhhhhhhHHHHHHhhhhhcC
Q 032220 101 AWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVN 144 (145)
Q Consensus 101 AWEEsEKaKaeNka~kk~s~I~aWEnskKA~~EAeLkKiEeklE 144 (145)
.|+..-|.+.-+|+-+.--.-.-+++- ...+|.++++-+--||
T Consensus 52 c~~~a~kk~~l~ra~k~~v~~~~~~~L-~~~ve~~~~~r~lgl~ 94 (94)
T d1g2ra_ 52 EALEAKKKKVFNRSFSMEVEESFYDEL-IAYVDHKVKRRELGLE 94 (94)
T ss_dssp HHHHHHHHTHHHHHHTSCCCHHHHHHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhChHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHcCCC
Confidence 456666667777776654343455553 6677888877665554
No 8
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.64 E-value=2.8e+02 Score=19.32 Aligned_cols=32 Identities=22% Similarity=0.507 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhHH----HHHHHHhhhhhhHHhhh
Q 032220 96 ISLIRAWEESEKSQA----ENKAHKKLSSIVSWENS 127 (145)
Q Consensus 96 ~slIkAWEEsEKaKa----eNka~kk~s~I~aWEns 127 (145)
+.|||.|-..=+.+. =..+.-+|-.|-+||..
T Consensus 8 IRLVKhWy~~~~~~~~~~lPpsYaLELLtiyAwE~g 43 (146)
T d1px5a1 8 IRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQG 43 (146)
T ss_dssp HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHhc
Confidence 456799986544333 35788999999999955
No 9
>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}
Probab=3.13 E-value=1e+02 Score=20.05 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=11.1
Q ss_pred HHhhhhhhhHHHHHHhhhh
Q 032220 123 SWENSRKAAVEAELKKIEV 141 (145)
Q Consensus 123 aWEnskKA~~EAeLkKiEe 141 (145)
-|=.++++++||-|.-+++
T Consensus 151 ~~~~~~r~~~~~~~~~~~~ 169 (170)
T d1zswa2 151 PFLEDQRAEIEANLAPIEE 169 (170)
T ss_dssp GGGGGGHHHHHHTCCCCCC
T ss_pred chhHhHHHHHHhhCCCccC
Confidence 3555666666666655544
No 10
>d2reta1 d.24.1.7 (A:30-110) Pseudopilin EpsI {Vibrio vulnificus [TaxId: 672]}
Probab=2.90 E-value=5.3e+02 Score=15.21 Aligned_cols=18 Identities=6% Similarity=0.361 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032220 83 RDAVLARVETEKRISLIR 100 (145)
Q Consensus 83 rD~~Larve~EKr~slIk 100 (145)
||..||...-+-||..|+
T Consensus 6 e~rt~A~wVA~N~lael~ 23 (81)
T d2reta1 6 EQKMFAAMVADNQMAMVM 23 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHh
Confidence 688888888888888774
Done!