BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032222
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 70 LLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L++E R I+ L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea virus (strain CP7) PE=1
SV=1
Length = 3907
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3484 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3521
>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea virus (strain SD-1) PE=3
SV=1
Length = 3898
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3475 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3512
>sp|B2G5W8|PROA_LACRJ Gamma-glutamyl phosphate reductase OS=Lactobacillus reuteri (strain
JCM 1112) GN=proA PE=3 SV=1
Length = 414
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 53 ILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEG---ILENWSKIKPVIMEDWS 109
+ RP V E LL+ R + +P I K+ + G+ + G + S I+PV EDW
Sbjct: 248 VQRPSVCNAAEKLLIHRDIAAKFLPVIAKALMEHGVQLRGDETACQLVSTIRPVTEEDWD 307
Query: 110 ENR----------DALVDLFGKVRD---EWMDKDLTTWIGANRYFKQAF 145
D+L D + + +T I RYF+QA
Sbjct: 308 TEYNDLIMAVKIVDSLDDAISHINHYSTHHSESIITNNITRGRYFQQAI 356
>sp|A5VIE0|PROA_LACRD Gamma-glutamyl phosphate reductase OS=Lactobacillus reuteri (strain
DSM 20016) GN=proA PE=3 SV=1
Length = 414
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 53 ILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEG---ILENWSKIKPVIMEDWS 109
+ RP V E LL+ R + +P I K+ + G+ + G + S I+PV EDW
Sbjct: 248 VQRPSVCNAAEKLLIHRDIAAKFLPVIAKALMEHGVQLRGDETACQLVSTIRPVTEEDWD 307
Query: 110 ENR----------DALVDLFGKVRD---EWMDKDLTTWIGANRYFKQAF 145
D+L D + + +T I RYF+QA
Sbjct: 308 TEYNDLIMAVKIVDSLDDAISHINHYSTHHSESIITNNITRGRYFQQAI 356
>sp|Q56339|FLHF_TREPA Flagellar biosynthesis protein FlhF OS=Treponema pallidum (strain
Nichols) GN=flhF PE=3 SV=1
Length = 437
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 36 FDGVDSVIEDWIVDQMHILRPVVETGYENLLLV 68
F+ V+S + WI++ +HI P + TG N++LV
Sbjct: 191 FEKVESTVLRWIIESVHIQVPPICTGTRNIVLV 223
>sp|P75396|Y386_MYCPN Uncharacterized protein MG268 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_386 PE=4 SV=1
Length = 229
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 58/110 (52%), Gaps = 18/110 (16%)
Query: 26 KAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENL---LLVRLLLEIRMPSIRKS 82
K + P +FD S+ EDW+ + +I RP + T Y +L ++ L+ + +P++
Sbjct: 89 KECNNKTPTIFD--RSIFEDWLFAKQNIHRPSIFTYYNHLWNGIVKELIFKHGIPALY-- 144
Query: 83 SVSEGLTVEG---ILEN--WSKIKPVIMEDWSENRDALVDLFGKVRDEWM 127
+ +EG + E + + + V ++++++N+D +L+ K+ E++
Sbjct: 145 -----VILEGDWELFEQRLFQRNRKVEIDNFAKNKDYFKNLY-KIYGEFI 188
>sp|Q07V09|PROA_RHOP5 Gamma-glutamyl phosphate reductase OS=Rhodopseudomonas palustris
(strain BisA53) GN=proA PE=3 SV=1
Length = 430
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 38 GVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENW 97
G D + IV + RP V E LL+ R E + + + G V G E
Sbjct: 249 GADLAMAKAIVLNAKMRRPGVCGAAETLLVDRAAAEADLAPLLSVLIESGCEVRGDAEMQ 308
Query: 98 ---SKIKPVIMEDWS 109
+++KPV EDWS
Sbjct: 309 RVDTRVKPVAEEDWS 323
>sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever virus (strain Brescia)
PE=3 SV=1
Length = 3898
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ W K KPV++ + E + L +F KV+ EW
Sbjct: 3476 LAITKVMYKWVKQKPVVIPGY-EGKTPLFQIFDKVKKEW 3513
>sp|P19712|POLG_CSFVA Genome polyprotein OS=Classical swine fever virus (strain Alfort)
PE=1 SV=2
Length = 3898
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ W K KPV++ + E + L +F KV+ EW
Sbjct: 3476 LAITKVMYKWVKQKPVVIPGY-EGKTPLFQIFDKVKKEW 3513
>sp|P17894|RECN_BACSU DNA repair protein RecN OS=Bacillus subtilis (strain 168) GN=recN
PE=3 SV=2
Length = 576
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 72 LEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDA 114
+E R+ I++ G TVE ILE SKI+ I D ENRD+
Sbjct: 302 IETRLNEIKQLKRKYGATVEDILEYASKIEEEI--DQIENRDS 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,654,155
Number of Sequences: 539616
Number of extensions: 2009858
Number of successful extensions: 5116
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5113
Number of HSP's gapped (non-prelim): 13
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)