Query 032222
Match_columns 145
No_of_seqs 92 out of 102
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13225 phosphoglycolate phos 96.5 0.02 4.4E-07 47.6 8.7 26 3-29 63-88 (273)
2 PRK10748 flavin mononucleotide 96.3 0.041 8.9E-07 44.1 9.3 26 3-29 11-36 (238)
3 PHA02597 30.2 hypothetical pro 96.1 0.023 4.9E-07 43.7 6.5 15 1-15 1-15 (197)
4 COG0546 Gph Predicted phosphat 95.8 0.093 2E-06 41.6 9.1 31 2-33 4-35 (220)
5 PRK13226 phosphoglycolate phos 95.8 0.096 2.1E-06 41.6 9.0 29 1-30 11-39 (229)
6 PLN03243 haloacid dehalogenase 95.8 0.0092 2E-07 49.3 3.2 28 3-30 25-52 (260)
7 COG0637 Predicted phosphatase/ 94.9 0.028 6E-07 45.1 3.5 28 2-30 2-29 (221)
8 PRK10826 2-deoxyglucose-6-phos 94.9 0.41 8.9E-06 37.4 10.0 27 3-30 8-35 (222)
9 TIGR02009 PGMB-YQAB-SF beta-ph 94.7 0.032 7E-07 41.8 3.1 27 3-30 2-28 (185)
10 PRK13288 pyrophosphatase PpaX; 94.5 0.04 8.6E-07 42.9 3.4 28 3-31 4-32 (214)
11 PLN02779 haloacid dehalogenase 94.5 0.032 7E-07 46.4 3.0 28 3-30 41-68 (286)
12 PRK13478 phosphonoacetaldehyde 94.2 0.042 9.1E-07 44.6 3.0 28 3-30 5-32 (267)
13 TIGR01449 PGP_bact 2-phosphogl 94.2 0.035 7.6E-07 42.6 2.4 25 5-30 1-25 (213)
14 TIGR01491 HAD-SF-IB-PSPlk HAD- 94.2 0.026 5.6E-07 42.8 1.6 17 1-17 3-19 (201)
15 PRK10725 fructose-1-P/6-phosph 94.2 0.047 1E-06 41.2 3.0 27 3-30 6-32 (188)
16 PRK13222 phosphoglycolate phos 94.1 0.054 1.2E-06 41.9 3.3 27 3-30 7-33 (226)
17 TIGR03351 PhnX-like phosphonat 94.1 0.05 1.1E-06 42.3 3.1 28 3-30 2-29 (220)
18 PRK09552 mtnX 2-hydroxy-3-keto 94.1 0.027 5.8E-07 44.5 1.6 18 1-18 2-19 (219)
19 TIGR01548 HAD-SF-IA-hyp1 haloa 93.6 0.064 1.4E-06 41.4 2.9 26 4-30 2-27 (197)
20 PRK10563 6-phosphogluconate ph 93.6 0.082 1.8E-06 41.2 3.5 28 3-31 5-32 (221)
21 TIGR02253 CTE7 HAD superfamily 93.6 0.055 1.2E-06 41.9 2.4 27 1-28 1-27 (221)
22 PLN02954 phosphoserine phospha 93.5 0.037 7.9E-07 43.2 1.4 14 3-16 13-26 (224)
23 TIGR01993 Pyr-5-nucltdase pyri 93.2 0.1 2.2E-06 39.7 3.3 22 4-26 2-23 (184)
24 PLN02575 haloacid dehalogenase 93.1 0.078 1.7E-06 46.9 3.0 27 4-30 133-159 (381)
25 TIGR00338 serB phosphoserine p 93.1 0.053 1.1E-06 42.1 1.7 16 1-16 13-28 (219)
26 PRK11587 putative phosphatase; 92.8 0.12 2.6E-06 40.5 3.3 27 3-30 4-30 (218)
27 TIGR01990 bPGM beta-phosphoglu 92.6 0.11 2.4E-06 38.9 2.8 26 5-31 2-27 (185)
28 PRK13223 phosphoglycolate phos 92.5 0.13 2.8E-06 42.4 3.3 25 1-26 12-36 (272)
29 TIGR01422 phosphonatase phosph 92.4 0.12 2.6E-06 41.3 2.9 26 3-28 3-28 (253)
30 TIGR02254 YjjG/YfnB HAD superf 92.2 0.15 3.2E-06 39.2 3.2 18 3-20 2-19 (224)
31 PLN02770 haloacid dehalogenase 92.0 0.16 3.4E-06 41.0 3.2 27 3-30 23-49 (248)
32 TIGR02252 DREG-2 REG-2-like, H 91.6 0.16 3.5E-06 38.9 2.7 27 3-30 1-27 (203)
33 PRK01158 phosphoglycolate phos 91.5 0.18 3.9E-06 39.3 2.9 26 2-27 3-28 (230)
34 TIGR01489 DKMTPPase-SF 2,3-dik 91.3 0.11 2.4E-06 38.8 1.4 15 4-18 3-17 (188)
35 TIGR02247 HAD-1A3-hyp Epoxide 90.9 0.2 4.3E-06 38.7 2.7 24 3-28 3-26 (211)
36 TIGR01454 AHBA_synth_RP 3-amin 90.8 0.19 4.1E-06 38.8 2.5 23 5-28 1-23 (205)
37 cd01427 HAD_like Haloacid deha 90.8 0.11 2.4E-06 35.5 1.0 15 4-18 1-15 (139)
38 TIGR01545 YfhB_g-proteo haloac 90.7 0.14 3E-06 41.0 1.6 16 1-16 4-19 (210)
39 TIGR01549 HAD-SF-IA-v1 haloaci 90.6 0.23 4.9E-06 36.4 2.5 26 4-30 1-26 (154)
40 PF06941 NT5C: 5' nucleotidase 90.6 0.13 2.8E-06 39.9 1.3 15 3-17 2-17 (191)
41 PRK13582 thrH phosphoserine ph 90.0 0.25 5.4E-06 37.8 2.4 13 3-15 2-14 (205)
42 TIGR02726 phenyl_P_delta pheny 89.4 0.15 3.2E-06 39.9 0.8 20 3-22 8-27 (169)
43 PRK09456 ?-D-glucose-1-phospha 89.3 2.4 5.2E-05 32.6 7.5 14 4-17 2-15 (199)
44 PLN02940 riboflavin kinase 89.1 0.36 7.8E-06 42.0 3.0 27 3-30 12-39 (382)
45 PRK11590 hypothetical protein; 89.1 0.38 8.1E-06 37.9 2.9 25 2-28 6-30 (211)
46 PF06888 Put_Phosphatase: Puta 88.6 0.24 5.1E-06 41.1 1.5 18 4-21 2-19 (234)
47 TIGR01488 HAD-SF-IB Haloacid D 88.2 0.22 4.7E-06 37.0 0.9 13 4-16 1-13 (177)
48 PRK14988 GMP/IMP nucleotidase; 88.1 0.39 8.5E-06 38.3 2.4 15 3-17 11-25 (224)
49 TIGR01662 HAD-SF-IIIA HAD-supe 88.0 0.28 6.2E-06 35.2 1.4 14 3-16 1-14 (132)
50 KOG3120 Predicted haloacid deh 87.9 0.77 1.7E-05 38.7 4.1 71 2-100 13-83 (256)
51 TIGR01509 HAD-SF-IA-v3 haloaci 87.4 0.27 5.9E-06 36.4 1.0 18 5-22 2-19 (183)
52 PRK06698 bifunctional 5'-methy 87.4 0.43 9.3E-06 42.1 2.4 27 3-30 242-269 (459)
53 PLN02423 phosphomannomutase 87.2 0.55 1.2E-05 38.2 2.8 31 1-31 6-36 (245)
54 PRK10976 putative hydrolase; P 87.1 0.58 1.2E-05 37.5 2.8 29 1-29 1-29 (266)
55 TIGR03333 salvage_mtnX 2-hydro 86.6 0.31 6.7E-06 38.3 1.0 12 5-16 2-13 (214)
56 TIGR01493 HAD-SF-IA-v2 Haloaci 86.5 0.6 1.3E-05 34.8 2.5 21 5-26 2-22 (175)
57 PF13419 HAD_2: Haloacid dehal 86.0 0.6 1.3E-05 33.5 2.2 14 5-18 1-14 (176)
58 PRK15126 thiamin pyrimidine py 86.0 0.75 1.6E-05 37.2 3.0 30 1-30 1-33 (272)
59 TIGR01487 SPP-like sucrose-pho 86.0 0.72 1.6E-05 36.0 2.8 28 3-30 2-29 (215)
60 TIGR01428 HAD_type_II 2-haloal 85.9 0.37 8.1E-06 36.8 1.2 16 3-18 2-17 (198)
61 PRK09449 dUMP phosphatase; Pro 85.5 0.79 1.7E-05 35.6 2.8 14 3-16 4-17 (224)
62 PRK10530 pyridoxal phosphate ( 84.7 0.91 2E-05 36.2 2.9 26 2-27 3-28 (272)
63 COG0560 SerB Phosphoserine pho 84.3 0.59 1.3E-05 37.7 1.6 15 1-15 4-18 (212)
64 PRK10513 sugar phosphate phosp 84.1 0.9 1.9E-05 36.4 2.6 28 2-29 3-30 (270)
65 TIGR01689 EcbF-BcbF capsule bi 84.0 0.63 1.4E-05 35.1 1.6 14 3-16 2-15 (126)
66 TIGR01484 HAD-SF-IIB HAD-super 83.5 0.97 2.1E-05 34.7 2.5 14 4-17 1-14 (204)
67 TIGR00685 T6PP trehalose-phosp 83.2 0.6 1.3E-05 37.6 1.3 14 3-16 4-17 (244)
68 PTZ00174 phosphomannomutase; P 83.2 1 2.3E-05 36.3 2.7 28 3-30 6-33 (247)
69 PRK09484 3-deoxy-D-manno-octul 83.1 0.59 1.3E-05 36.3 1.2 14 3-16 22-35 (183)
70 TIGR01482 SPP-subfamily Sucros 82.7 0.96 2.1E-05 35.0 2.2 22 5-26 1-22 (225)
71 PRK10187 trehalose-6-phosphate 82.3 1.5 3.2E-05 36.2 3.3 13 3-15 15-27 (266)
72 TIGR00099 Cof-subfamily Cof su 81.9 1.2 2.5E-05 35.6 2.5 26 4-29 1-26 (256)
73 TIGR01490 HAD-SF-IB-hyp1 HAD-s 81.1 0.76 1.7E-05 35.0 1.1 14 4-17 1-14 (202)
74 PF12710 HAD: haloacid dehalog 80.5 0.95 2.1E-05 33.8 1.4 13 5-17 1-13 (192)
75 PLN02919 haloacid dehalogenase 79.9 1.6 3.4E-05 43.2 3.0 26 4-30 77-103 (1057)
76 TIGR01456 CECR5 HAD-superfamil 79.1 1.7 3.6E-05 36.8 2.6 28 4-32 2-29 (321)
77 COG0561 Cof Predicted hydrolas 78.7 1.9 4.1E-05 34.6 2.7 29 1-29 2-30 (264)
78 PF08282 Hydrolase_3: haloacid 76.7 2.2 4.8E-05 32.4 2.5 24 5-28 1-24 (254)
79 PRK00192 mannosyl-3-phosphogly 76.2 2.6 5.6E-05 34.3 2.9 30 1-30 3-35 (273)
80 TIGR01681 HAD-SF-IIIC HAD-supe 76.2 1.7 3.6E-05 31.9 1.6 14 3-16 1-14 (128)
81 PF08645 PNK3P: Polynucleotide 73.9 1.7 3.7E-05 33.4 1.2 14 3-16 1-14 (159)
82 COG1778 Low specificity phosph 73.3 1.9 4.1E-05 34.6 1.3 92 3-115 9-102 (170)
83 PRK03669 mannosyl-3-phosphogly 72.5 3.5 7.6E-05 33.5 2.8 28 3-30 8-35 (271)
84 PLN02205 alpha,alpha-trehalose 72.1 5.2 0.00011 38.9 4.2 63 1-64 595-667 (854)
85 TIGR01670 YrbI-phosphatas 3-de 71.7 1.7 3.6E-05 32.8 0.7 14 3-16 2-15 (154)
86 COG5663 Uncharacterized conser 71.5 1.8 3.8E-05 35.2 0.8 13 5-17 9-21 (194)
87 TIGR01672 AphA HAD superfamily 70.3 2.3 5E-05 35.1 1.3 15 4-18 65-79 (237)
88 COG2442 Uncharacterized conser 70.3 13 0.00028 26.0 4.9 30 86-125 42-71 (79)
89 PF04255 DUF433: Protein of un 70.0 8.3 0.00018 24.8 3.6 24 87-120 31-54 (56)
90 TIGR01656 Histidinol-ppas hist 69.3 2.8 6.1E-05 31.0 1.4 16 3-18 1-16 (147)
91 TIGR01486 HAD-SF-IIB-MPGP mann 69.1 4 8.6E-05 32.8 2.4 27 4-30 1-30 (256)
92 TIGR01458 HAD-SF-IIA-hyp3 HAD- 68.6 4.8 0.0001 32.9 2.8 28 3-30 2-35 (257)
93 PF13344 Hydrolase_6: Haloacid 68.2 2.6 5.5E-05 30.0 1.0 14 5-18 1-14 (101)
94 PLN02580 trehalose-phosphatase 67.2 2.9 6.4E-05 37.1 1.3 13 3-15 120-132 (384)
95 PLN02887 hydrolase family prot 67.0 5.3 0.00011 37.2 3.0 29 2-30 308-336 (580)
96 TIGR02461 osmo_MPG_phos mannos 66.7 6.2 0.00013 31.6 3.0 13 4-16 1-13 (225)
97 PRK11133 serB phosphoserine ph 65.9 5.9 0.00013 34.0 2.9 18 3-22 111-128 (322)
98 COG1011 Predicted hydrolase (H 63.9 4.1 8.8E-05 31.3 1.4 18 2-19 4-21 (229)
99 PLN03017 trehalose-phosphatase 63.4 6.3 0.00014 34.9 2.6 12 3-14 112-123 (366)
100 PF06189 5-nucleotidase: 5'-nu 62.9 3.7 7.9E-05 35.0 1.1 17 5-21 124-140 (264)
101 PF02358 Trehalose_PPase: Treh 62.5 3.6 7.9E-05 32.8 1.0 58 6-64 1-69 (235)
102 PF00702 Hydrolase: haloacid d 61.9 7.8 0.00017 29.1 2.6 18 3-20 2-19 (215)
103 TIGR01460 HAD-SF-IIA Haloacid 61.8 4.9 0.00011 32.3 1.6 23 5-28 1-23 (236)
104 smart00775 LNS2 LNS2 domain. T 61.5 7.2 0.00016 29.8 2.4 14 4-17 1-14 (157)
105 PRK10444 UMP phosphatase; Prov 61.0 4.7 0.0001 33.0 1.4 15 3-17 2-16 (248)
106 PLN02151 trehalose-phosphatase 60.2 4.8 0.0001 35.5 1.4 12 3-14 99-110 (354)
107 TIGR01261 hisB_Nterm histidino 59.1 3.5 7.5E-05 31.7 0.3 16 3-18 2-17 (161)
108 PLN02645 phosphoglycolate phos 58.9 5.2 0.00011 33.6 1.3 26 3-29 29-54 (311)
109 TIGR02471 sucr_syn_bact_C sucr 57.9 10 0.00022 30.0 2.8 59 4-64 1-67 (236)
110 TIGR02137 HSK-PSP phosphoserin 56.8 5.9 0.00013 31.5 1.3 14 3-16 2-15 (203)
111 PRK14501 putative bifunctional 56.6 10 0.00023 35.6 3.0 61 3-64 493-564 (726)
112 TIGR01452 PGP_euk phosphoglyco 56.1 6.5 0.00014 32.3 1.4 28 3-31 3-30 (279)
113 PRK12702 mannosyl-3-phosphogly 55.5 11 0.00024 32.7 2.8 29 3-31 2-30 (302)
114 TIGR01457 HAD-SF-IIA-hyp2 HAD- 55.5 6.8 0.00015 31.8 1.4 26 3-29 2-27 (249)
115 TIGR02463 MPGP_rel mannosyl-3- 55.1 14 0.00031 28.6 3.1 27 4-30 1-30 (221)
116 PF02861 Clp_N: Clp amino term 53.9 23 0.00049 21.3 3.3 25 99-123 28-52 (53)
117 PF03031 NIF: NLI interacting 53.8 5.6 0.00012 29.5 0.6 17 3-19 1-17 (159)
118 COG1877 OtsB Trehalose-6-phosp 50.1 9 0.0002 32.4 1.4 16 2-17 18-33 (266)
119 PLN02177 glycerol-3-phosphate 50.0 9.5 0.00021 34.9 1.6 14 2-15 22-35 (497)
120 TIGR01485 SPP_plant-cyano sucr 49.4 20 0.00044 28.6 3.3 24 4-27 3-29 (249)
121 PRK08942 D,D-heptose 1,7-bisph 48.2 11 0.00024 28.6 1.5 14 1-14 2-15 (181)
122 PF05116 S6PP: Sucrose-6F-phos 47.6 11 0.00024 30.7 1.5 18 3-20 3-20 (247)
123 PLN03063 alpha,alpha-trehalose 47.3 10 0.00022 36.4 1.4 14 3-16 508-521 (797)
124 TIGR01664 DNA-3'-Pase DNA 3'-p 47.1 11 0.00025 28.9 1.4 16 2-17 13-28 (166)
125 PF01701 PSI_PsaJ: Photosystem 45.6 7.8 0.00017 23.8 0.2 13 132-144 24-36 (37)
126 PF08496 Peptidase_S49_N: Pept 45.0 12 0.00027 29.2 1.3 13 2-14 98-110 (155)
127 PRK08238 hypothetical protein; 44.7 16 0.00035 33.2 2.2 22 4-25 12-35 (479)
128 PLN02811 hydrolase 44.7 16 0.00035 28.6 1.9 20 9-29 1-20 (220)
129 PF08678 Rsbr_N: Rsbr N termin 43.7 43 0.00093 25.6 4.1 48 57-128 67-114 (129)
130 PLN03064 alpha,alpha-trehalose 42.1 14 0.00029 36.6 1.4 14 3-16 592-605 (934)
131 PF11691 DUF3288: Protein of u 42.0 45 0.00097 24.2 3.7 52 60-128 24-75 (90)
132 PHA01886 TM2 domain-containing 41.9 10 0.00022 26.8 0.3 13 131-143 13-25 (78)
133 PF03704 BTAD: Bacterial trans 41.3 93 0.002 22.3 5.5 63 45-122 82-145 (146)
134 cd06535 CIDE_N_CAD CIDE_N doma 41.3 19 0.00042 25.3 1.7 19 3-23 41-59 (77)
135 PF05154 TM2: TM2 domain; Int 40.8 9.6 0.00021 24.1 0.1 13 131-143 14-26 (51)
136 smart00592 BRK domain in trans 39.6 16 0.00035 23.0 1.0 15 128-142 25-39 (45)
137 CHL00105 psaJ photosystem I su 39.5 12 0.00026 23.6 0.4 19 126-144 18-36 (42)
138 PRK02733 photosystem I reactio 39.4 12 0.00026 23.6 0.4 19 126-144 18-36 (42)
139 TIGR00213 GmhB_yaeD D,D-heptos 38.4 19 0.00042 27.3 1.5 13 3-15 2-14 (176)
140 PF14213 DUF4325: Domain of un 38.2 30 0.00065 23.1 2.2 21 2-24 17-37 (74)
141 PRK05446 imidazole glycerol-ph 37.8 20 0.00044 31.4 1.7 18 1-18 1-18 (354)
142 PRK14502 bifunctional mannosyl 36.2 31 0.00067 33.2 2.8 28 3-30 417-447 (694)
143 COG1813 Predicted transcriptio 35.8 53 0.0011 26.2 3.6 32 89-120 72-103 (165)
144 PF13265 DUF4056: Protein of u 35.7 1.4E+02 0.0031 25.6 6.4 55 87-141 199-257 (270)
145 TIGR01663 PNK-3'Pase polynucle 34.9 22 0.00047 32.9 1.5 14 2-15 168-181 (526)
146 PF08620 RPAP1_C: RPAP1-like, 34.0 15 0.00032 25.5 0.2 9 6-14 4-12 (73)
147 PF05666 Fels1: Fels-1 Prophag 33.9 15 0.00032 23.4 0.2 8 10-17 16-23 (45)
148 cd06539 CIDE_N_A CIDE_N domain 32.9 29 0.00062 24.5 1.5 19 4-23 42-60 (78)
149 cd06537 CIDE_N_B CIDE_N domain 32.5 29 0.00063 24.7 1.5 19 4-23 41-59 (81)
150 smart00577 CPDc catalytic doma 32.0 28 0.0006 25.9 1.4 16 3-18 3-18 (148)
151 PLN02499 glycerol-3-phosphate 31.8 42 0.00091 31.1 2.8 25 3-27 9-36 (498)
152 KOG1618 Predicted phosphatase 30.9 23 0.00051 31.6 1.0 13 5-17 38-50 (389)
153 PF05920 Homeobox_KN: Homeobox 30.5 1.1E+02 0.0024 18.5 3.6 26 100-125 15-40 (40)
154 PF14581 SseB_C: SseB protein 30.4 38 0.00082 23.9 1.8 50 4-58 52-106 (108)
155 TIGR02245 HAD_IIID1 HAD-superf 28.8 31 0.00068 27.8 1.3 15 3-17 22-36 (195)
156 PRK00396 rnpA ribonuclease P; 28.7 17 0.00036 27.5 -0.3 45 45-103 68-112 (130)
157 TIGR01459 HAD-SF-IIA-hyp4 HAD- 27.5 37 0.0008 27.1 1.5 17 3-19 9-25 (242)
158 COG0647 NagD Predicted sugar p 26.4 34 0.00074 28.9 1.2 15 3-17 9-23 (269)
159 smart00266 CAD Domains present 26.2 42 0.00091 23.4 1.4 19 4-23 40-58 (74)
160 cd06536 CIDE_N_ICAD CIDE_N dom 25.9 43 0.00094 23.7 1.4 19 4-23 44-62 (80)
161 PF02438 Adeno_100: Late 100kD 25.2 76 0.0016 30.0 3.2 58 13-73 307-364 (583)
162 cd02185 AroH Chorismate mutase 24.8 94 0.002 23.5 3.1 37 81-117 6-42 (117)
163 TIGR01684 viral_ppase viral ph 24.2 45 0.00097 29.0 1.5 17 2-18 126-142 (301)
164 PRK03031 rnpA ribonuclease P; 24.1 13 0.00028 27.4 -1.6 43 45-100 69-111 (122)
165 cd06538 CIDE_N_FSP27 CIDE_N do 23.8 50 0.0011 23.3 1.4 19 4-23 41-59 (79)
166 PF13350 Y_phosphatase3: Tyros 23.8 44 0.00095 25.2 1.2 39 45-98 111-161 (164)
167 PF10549 ORF11CD3: ORF11CD3 do 23.8 1E+02 0.0022 20.4 2.8 30 96-125 20-49 (57)
168 PF08947 BPS: BPS (Between PH 23.4 45 0.00098 21.6 1.0 12 2-13 6-17 (49)
169 TIGR01796 CM_mono_aroH monofun 23.2 1.1E+02 0.0023 23.3 3.2 36 82-117 7-42 (117)
170 cd01615 CIDE_N CIDE_N domain, 23.2 51 0.0011 23.2 1.4 19 4-23 42-60 (78)
171 PRK00730 rnpA ribonuclease P; 23.0 21 0.00046 27.5 -0.7 53 45-112 67-119 (138)
172 PF10118 Metal_hydrol: Predict 22.9 4.4E+02 0.0095 21.8 7.1 99 6-129 7-108 (253)
173 COG0320 LipA Lipoate synthase 22.7 1.7E+02 0.0036 25.7 4.6 72 29-125 169-240 (306)
174 COG4229 Predicted enolase-phos 21.0 1.1E+02 0.0024 25.5 3.1 31 100-132 49-79 (229)
175 PF13767 DUF4168: Domain of un 20.9 1.7E+02 0.0036 19.7 3.6 36 89-124 35-70 (78)
176 cd07321 Extradiol_Dioxygenase_ 20.8 1.3E+02 0.0029 20.6 3.0 30 90-119 15-44 (77)
177 PRK03459 rnpA ribonuclease P; 20.7 19 0.00042 26.8 -1.2 45 45-102 69-113 (122)
178 PF12368 DUF3650: Protein of u 20.5 91 0.002 18.0 1.8 19 103-121 9-27 (28)
179 PRK14865 rnpA ribonuclease P; 20.4 27 0.00058 25.5 -0.6 47 45-105 66-112 (116)
180 KOG2914 Predicted haloacid-hal 20.2 87 0.0019 25.8 2.4 26 4-29 12-37 (222)
No 1
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.46 E-value=0.02 Score=47.60 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=18.6
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHH
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
+.+.|||||||+|+..=+.. +|+.+.
T Consensus 63 k~vIFDlDGTLiDS~~~~~~-a~~~~~ 88 (273)
T PRK13225 63 QAIIFDFDGTLVDSLPTVVA-IANAHA 88 (273)
T ss_pred CEEEECCcCccccCHHHHHH-HHHHHH
Confidence 35799999999999865544 454433
No 2
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=96.29 E-value=0.041 Score=44.10 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=19.3
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHH
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
+.+.||||||++|+.. +...+++.+.
T Consensus 11 k~iiFDlDGTL~D~~~-~~~~a~~~~~ 36 (238)
T PRK10748 11 SALTFDLDDTLYDNRP-VILRTEQEAL 36 (238)
T ss_pred eeEEEcCcccccCChH-HHHHHHHHHH
Confidence 4689999999999964 5556665444
No 3
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.07 E-value=0.023 Score=43.69 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=14.0
Q ss_pred CCceeEEecCccccC
Q 032222 1 MADLYALDFDGVLCD 15 (145)
Q Consensus 1 ~~~llalDFDGVIcD 15 (145)
|-+.+.||+||||.|
T Consensus 1 m~k~viFDlDGTLiD 15 (197)
T PHA02597 1 MKPTILTDVDGVLLS 15 (197)
T ss_pred CCcEEEEecCCceEc
Confidence 678899999999999
No 4
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=95.80 E-value=0.093 Score=41.63 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=21.7
Q ss_pred CceeEEecCccccCCchhhHHHHH-HHHHhhCC
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAV-KAAKVRWP 33 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~-~a~~~~wp 33 (145)
-+.+.||+|||+||+.. ++..++ .+..++.+
T Consensus 4 ~~~iiFDlDGTL~Ds~~-~~~~~~~~~~~~~~~ 35 (220)
T COG0546 4 IKAILFDLDGTLVDSAE-DILRAFNAALAELGL 35 (220)
T ss_pred CCEEEEeCCCccccChH-HHHHHHHHHHHHcCC
Confidence 35789999999999985 444455 45555443
No 5
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=95.75 E-value=0.096 Score=41.65 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 1 MADLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
|-+.+.|||||||+|+..- ...+|+.+..
T Consensus 11 ~~k~viFD~DGTL~Ds~~~-~~~a~~~~~~ 39 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPD-MLATVNAMLA 39 (229)
T ss_pred cCCEEEEcCcCccccCHHH-HHHHHHHHHH
Confidence 4567899999999999864 5556655544
No 6
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=95.75 E-value=0.0092 Score=49.28 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=21.9
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.++|||||||+|+....+..+|+.+.+
T Consensus 25 k~vIFDlDGTLvDS~~~~~~~a~~~~~~ 52 (260)
T PLN03243 25 LGVVLEWEGVIVEDDSELERKAWRALAE 52 (260)
T ss_pred eEEEEeCCCceeCCchHHHHHHHHHHHH
Confidence 3689999999999987777777765544
No 7
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.93 E-value=0.028 Score=45.08 Aligned_cols=28 Identities=29% Similarity=0.221 Sum_probs=21.3
Q ss_pred CceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
=+.+.||+||||+|+ -.+...+|+.+..
T Consensus 2 ~~avIFD~DGvLvDs-e~~~~~a~~~~~~ 29 (221)
T COG0637 2 IKAVIFDMDGTLVDS-EPLHARAWLEALK 29 (221)
T ss_pred CcEEEEcCCCCcCcc-hHHHHHHHHHHHH
Confidence 356899999999999 5677777754444
No 8
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=94.89 E-value=0.41 Score=37.42 Aligned_cols=27 Identities=26% Similarity=0.066 Sum_probs=19.1
Q ss_pred ceeEEecCccccCCchhhHHHHHH-HHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVK-AAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~-a~~~ 30 (145)
+.++|||||||+|+.. .+..+++ ++..
T Consensus 8 k~iiFD~DGTL~d~~~-~~~~a~~~~~~~ 35 (222)
T PRK10826 8 LAAIFDMDGLLIDSEP-LWDRAELDVMAS 35 (222)
T ss_pred cEEEEcCCCCCCcCHH-HHHHHHHHHHHH
Confidence 5689999999999954 4555554 4433
No 9
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=94.70 E-value=0.032 Score=41.82 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=19.5
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+++.||||||++|+.. ....+|+.+.+
T Consensus 2 ~~iiFD~DGTL~ds~~-~~~~~~~~~~~ 28 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP-LHAQAWKHLAD 28 (185)
T ss_pred CeEEEcCCCcccCChH-HHHHHHHHHHH
Confidence 4689999999999974 45556554443
No 10
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=94.54 E-value=0.04 Score=42.86 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=20.6
Q ss_pred ceeEEecCccccCCchhhHHHHHH-HHHhh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVK-AAKVR 31 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~-a~~~~ 31 (145)
+.+.|||||||+|+.. +...+|+ ++++.
T Consensus 4 ~~viFD~DGTL~ds~~-~~~~a~~~~~~~~ 32 (214)
T PRK13288 4 NTVLFDLDGTLINTNE-LIISSFLHTLKTY 32 (214)
T ss_pred cEEEEeCCCcCccCHH-HHHHHHHHHHHHh
Confidence 5789999999999985 4455665 44443
No 11
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=94.53 E-value=0.032 Score=46.44 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=21.2
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.+.|||||||+|+.......||+.+..
T Consensus 41 k~VIFDlDGTLvDS~~~~~~~a~~~~l~ 68 (286)
T PLN02779 41 EALLFDCDGVLVETERDGHRVAFNDAFK 68 (286)
T ss_pred cEEEEeCceeEEccccHHHHHHHHHHHH
Confidence 4689999999999996666666654443
No 12
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=94.23 E-value=0.042 Score=44.60 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=19.0
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.+.|||||||+|+..-....+|+.+..
T Consensus 5 k~vIFDlDGTLiDs~~~~~~~a~~~~~~ 32 (267)
T PRK13478 5 QAVIFDWAGTTVDFGSFAPTQAFVEAFA 32 (267)
T ss_pred EEEEEcCCCCeecCCCccHHHHHHHHHH
Confidence 4689999999999853233456654433
No 13
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=94.21 E-value=0.035 Score=42.64 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=17.7
Q ss_pred eEEecCccccCCchhhHHHHHHHHHh
Q 032222 5 YALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.|||||||+|+.. .+..+|+.+.+
T Consensus 1 viFD~DGTL~Ds~~-~~~~~~~~~~~ 25 (213)
T TIGR01449 1 VLFDLDGTLVDSAP-DIAAAVNMALA 25 (213)
T ss_pred CeecCCCccccCHH-HHHHHHHHHHH
Confidence 47999999999965 44556654443
No 14
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=94.18 E-value=0.026 Score=42.78 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.7
Q ss_pred CCceeEEecCccccCCc
Q 032222 1 MADLYALDFDGVLCDSC 17 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~ 17 (145)
|-++++|||||||+|+-
T Consensus 3 ~~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVM 19 (201)
T ss_pred cceEEEEeCCCCCcCCc
Confidence 56789999999999864
No 15
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.17 E-value=0.047 Score=41.20 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=19.1
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.++|||||||.|+.. .+..||+.+.+
T Consensus 6 ~~viFD~DGTLiDs~~-~~~~a~~~~~~ 32 (188)
T PRK10725 6 AGLIFDMDGTILDTEP-THRKAWREVLG 32 (188)
T ss_pred eEEEEcCCCcCccCHH-HHHHHHHHHHH
Confidence 3589999999999965 44555544433
No 16
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=94.12 E-value=0.054 Score=41.87 Aligned_cols=27 Identities=41% Similarity=0.461 Sum_probs=19.6
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.++|||||||+|+.. .+..+|..+.+
T Consensus 7 ~~iiFD~DGTL~d~~~-~~~~~~~~~~~ 33 (226)
T PRK13222 7 RAVAFDLDGTLVDSAP-DLAAAVNAALA 33 (226)
T ss_pred cEEEEcCCcccccCHH-HHHHHHHHHHH
Confidence 5789999999999853 45556654444
No 17
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=94.11 E-value=0.05 Score=42.28 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=20.0
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+++.|||||||+|+..-+..+-.+++.+
T Consensus 2 k~iiFD~DGTL~ds~~~~~~~~~~~~~~ 29 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDGLVYRALRQAVTA 29 (220)
T ss_pred cEEEEecCCCeeccCchHHHHHHHHHHH
Confidence 4678999999999986554444455554
No 18
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.09 E-value=0.027 Score=44.47 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.5
Q ss_pred CCceeEEecCccccCCch
Q 032222 1 MADLYALDFDGVLCDSCG 18 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~ 18 (145)
|..+++|||||+|+|.-.
T Consensus 2 ~~~~vifDfDgTi~~~d~ 19 (219)
T PRK09552 2 MSIQIFCDFDGTITNNDN 19 (219)
T ss_pred CCcEEEEcCCCCCCcchh
Confidence 677999999999998753
No 19
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=93.64 E-value=0.064 Score=41.37 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=18.3
Q ss_pred eeEEecCccccCCchhhHHHHHHHHHh
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
.+.|||||||+|+..= +..+++.+.+
T Consensus 2 ~viFD~DGTLiDs~~~-~~~a~~~~~~ 27 (197)
T TIGR01548 2 ALVLDMDGVMADVSQS-YRRAIIDTVE 27 (197)
T ss_pred ceEEecCceEEechHH-HHHHHHHHHH
Confidence 5789999999999954 4445543333
No 20
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=93.61 E-value=0.082 Score=41.21 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=20.6
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHhh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~~ 31 (145)
+.++|||||||+|+. +.+..+|+.....
T Consensus 5 ~~viFD~DGTL~d~~-~~~~~a~~~~~~~ 32 (221)
T PRK10563 5 EAVFFDCDGTLVDSE-VICSRAYVTMFAE 32 (221)
T ss_pred CEEEECCCCCCCCCh-HHHHHHHHHHHHH
Confidence 678999999999985 4555666555443
No 21
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=93.56 E-value=0.055 Score=41.89 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=19.8
Q ss_pred CCceeEEecCccccCCchhhHHHHHHHH
Q 032222 1 MADLYALDFDGVLCDSCGESSLSAVKAA 28 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~E~~~sa~~a~ 28 (145)
|-+.+.||+||||+|+. +.+..+|+..
T Consensus 1 ~~~~viFDlDGTL~ds~-~~~~~~~~~~ 27 (221)
T TIGR02253 1 MIKAIFFDLDDTLIDTS-GLAEKARRNA 27 (221)
T ss_pred CceEEEEeCCCCCcCCC-CccCHHHHHH
Confidence 55688999999999987 3444555543
No 22
>PLN02954 phosphoserine phosphatase
Probab=93.52 E-value=0.037 Score=43.18 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=13.0
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
++++|||||||+|+
T Consensus 13 k~viFDfDGTL~~~ 26 (224)
T PLN02954 13 DAVCFDVDSTVCVD 26 (224)
T ss_pred CEEEEeCCCcccch
Confidence 68999999999997
No 23
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=93.17 E-value=0.1 Score=39.65 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=16.2
Q ss_pred eeEEecCccccCCchhhHHHHHH
Q 032222 4 LYALDFDGVLCDSCGESSLSAVK 26 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~ 26 (145)
.+.|||||||+|+..- ...+++
T Consensus 2 ~viFDlDGTL~ds~~~-~~~~~~ 23 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAG-IFLQID 23 (184)
T ss_pred eEEEeCCCCCCCCccc-HHHHHH
Confidence 5789999999999643 334443
No 24
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=93.14 E-value=0.078 Score=46.88 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.4
Q ss_pred eeEEecCccccCCchhhHHHHHHHHHh
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
.++|||||||+|+.......+|+++.+
T Consensus 133 ~VIFDlDGTLIDS~~~i~~~a~~~l~~ 159 (381)
T PLN02575 133 GAIFEWEGVIIEDNPDLENQAWLTLAQ 159 (381)
T ss_pred EEEEcCcCcceeCHHHHHHHHHHHHHH
Confidence 579999999999998777778876654
No 25
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=93.13 E-value=0.053 Score=42.13 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.3
Q ss_pred CCceeEEecCccccCC
Q 032222 1 MADLYALDFDGVLCDS 16 (145)
Q Consensus 1 ~~~llalDFDGVIcDg 16 (145)
|.++++|||||||.|+
T Consensus 13 ~~k~iiFD~DGTL~~~ 28 (219)
T TIGR00338 13 SKKLVVFDMDSTLINA 28 (219)
T ss_pred cCCEEEEeCcccCCCc
Confidence 4578999999999997
No 26
>PRK11587 putative phosphatase; Provisional
Probab=92.77 E-value=0.12 Score=40.50 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=19.4
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.+.|||||||+|+.. .+..+|+.+.+
T Consensus 4 k~viFDlDGTL~Ds~~-~~~~a~~~~~~ 30 (218)
T PRK11587 4 KGFLFDLDGTLVDSLP-AVERAWSNWAD 30 (218)
T ss_pred CEEEEcCCCCcCcCHH-HHHHHHHHHHH
Confidence 4689999999999975 44556654333
No 27
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=92.59 E-value=0.11 Score=38.85 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=19.8
Q ss_pred eEEecCccccCCchhhHHHHHHHHHhh
Q 032222 5 YALDFDGVLCDSCGESSLSAVKAAKVR 31 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~sa~~a~~~~ 31 (145)
+.|||||||+|+.. .+..+|+.....
T Consensus 2 iiFD~DGTL~ds~~-~~~~~~~~~~~~ 27 (185)
T TIGR01990 2 VIFDLDGVITDTAE-YHYLAWKALADE 27 (185)
T ss_pred eEEcCCCccccChH-HHHHHHHHHHHH
Confidence 68999999999985 555666655544
No 28
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=92.48 E-value=0.13 Score=42.39 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=19.4
Q ss_pred CCceeEEecCccccCCchhhHHHHHH
Q 032222 1 MADLYALDFDGVLCDSCGESSLSAVK 26 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~E~~~sa~~ 26 (145)
|.+++.|||||||.|+..-+. .+++
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~-~a~~ 36 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLA-AAVD 36 (272)
T ss_pred cCCEEEEcCCCccccCHHHHH-HHHH
Confidence 457899999999999987654 4443
No 29
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=92.38 E-value=0.12 Score=41.33 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=17.1
Q ss_pred ceeEEecCccccCCchhhHHHHHHHH
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAA 28 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~ 28 (145)
+.+.|||||||+|+..-....+|+.+
T Consensus 3 k~viFD~DGTLiDs~~~~~~~a~~~~ 28 (253)
T TIGR01422 3 EAVIFDWAGTTVDFGSFAPTQAFVEA 28 (253)
T ss_pred eEEEEeCCCCeecCCCccHHHHHHHH
Confidence 45899999999998432223455433
No 30
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=92.22 E-value=0.15 Score=39.23 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.1
Q ss_pred ceeEEecCccccCCchhh
Q 032222 3 DLYALDFDGVLCDSCGES 20 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~ 20 (145)
+.+.||||||++|+..-.
T Consensus 2 k~viFD~DGTL~d~~~~~ 19 (224)
T TIGR02254 2 KTLLFDLDDTILDFQAAE 19 (224)
T ss_pred CEEEEcCcCcccccchHH
Confidence 468999999999998633
No 31
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=91.97 E-value=0.16 Score=41.02 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=19.7
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.+.|||||||+|+.. ....||+.+.+
T Consensus 23 k~viFDlDGTLiDs~~-~~~~a~~~~~~ 49 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP-LHYYAFREMLQ 49 (248)
T ss_pred CEEEEcCCCccCcCHH-HHHHHHHHHHH
Confidence 4689999999999974 55666654433
No 32
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=91.63 E-value=0.16 Score=38.93 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=19.3
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+.+.||+||||+|+. +.+..+++.+.+
T Consensus 1 k~viFDlDGTL~d~~-~~~~~a~~~~~~ 27 (203)
T TIGR02252 1 KLITFDAVGTLLALK-EPVGEVYCEIAR 27 (203)
T ss_pred CeEEEecCCceeeeC-CCHHHHHHHHHH
Confidence 368999999999975 455556654443
No 33
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=91.47 E-value=0.18 Score=39.35 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=17.7
Q ss_pred CceeEEecCccccCCchhhHHHHHHH
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAVKA 27 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~~a 27 (145)
=+++++|+||+++|+=.+......+|
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~a 28 (230)
T PRK01158 3 IKAIAIDIDGTITDKDRRLSLKAVEA 28 (230)
T ss_pred eeEEEEecCCCcCCCCCccCHHHHHH
Confidence 37999999999998644333333333
No 34
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=91.25 E-value=0.11 Score=38.78 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=12.9
Q ss_pred eeEEecCccccCCch
Q 032222 4 LYALDFDGVLCDSCG 18 (145)
Q Consensus 4 llalDFDGVIcDg~~ 18 (145)
+++|||||||.|.-.
T Consensus 3 ~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 3 VVVSDFDGTITLNDS 17 (188)
T ss_pred EEEEeCCCcccCCCc
Confidence 689999999999743
No 35
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=90.93 E-value=0.2 Score=38.73 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=17.6
Q ss_pred ceeEEecCccccCCchhhHHHHHHHH
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAA 28 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~ 28 (145)
+.++||||||++|+-. ...+|...
T Consensus 3 k~viFDldGtL~d~~~--~~~~~~~~ 26 (211)
T TIGR02247 3 KAVIFDFGGVLLPSPG--VMRRWETE 26 (211)
T ss_pred eEEEEecCCceecCHH--HHHHHHHH
Confidence 4689999999999843 45555543
No 36
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=90.84 E-value=0.19 Score=38.77 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=17.2
Q ss_pred eEEecCccccCCchhhHHHHHHHH
Q 032222 5 YALDFDGVLCDSCGESSLSAVKAA 28 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~sa~~a~ 28 (145)
+.|||||||+|+.. ....+++.+
T Consensus 1 iiFDlDGTL~Ds~~-~~~~~~~~~ 23 (205)
T TIGR01454 1 VVFDLDGVLVDSFA-VMREAFAIA 23 (205)
T ss_pred CeecCcCccccCHH-HHHHHHHHH
Confidence 47999999999975 555566544
No 37
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=90.79 E-value=0.11 Score=35.49 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=13.0
Q ss_pred eeEEecCccccCCch
Q 032222 4 LYALDFDGVLCDSCG 18 (145)
Q Consensus 4 llalDFDGVIcDg~~ 18 (145)
+++||||||+|.+-.
T Consensus 1 ~~vfD~D~tl~~~~~ 15 (139)
T cd01427 1 AVLFDLDGTLLDSEP 15 (139)
T ss_pred CeEEccCCceEccCc
Confidence 579999999998864
No 38
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=90.71 E-value=0.14 Score=40.97 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.8
Q ss_pred CCceeEEecCccccCC
Q 032222 1 MADLYALDFDGVLCDS 16 (145)
Q Consensus 1 ~~~llalDFDGVIcDg 16 (145)
|.+|.+|||||+|+++
T Consensus 4 ~~~la~FDfDgTLt~~ 19 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQ 19 (210)
T ss_pred cCcEEEEcCCCCCccC
Confidence 4678999999999876
No 39
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=90.58 E-value=0.23 Score=36.35 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=18.1
Q ss_pred eeEEecCccccCCchhhHHHHHHHHHh
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
++.||+|||++|+.. ....+|+.+..
T Consensus 1 ~iifD~DGTL~d~~~-~~~~~~~~~~~ 26 (154)
T TIGR01549 1 AILFDIDGTLVDSSF-AIRRAFEETLE 26 (154)
T ss_pred CeEecCCCcccccHH-HHHHHHHHHHH
Confidence 478999999999853 44555654433
No 40
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=90.56 E-value=0.13 Score=39.91 Aligned_cols=15 Identities=47% Similarity=0.729 Sum_probs=11.7
Q ss_pred ce-eEEecCccccCCc
Q 032222 3 DL-YALDFDGVLCDSC 17 (145)
Q Consensus 3 ~l-lalDFDGVIcDg~ 17 (145)
+| +++|+||||||-.
T Consensus 2 ~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFN 17 (191)
T ss_dssp -EEEEEESBTTTB-HH
T ss_pred CcEEEEECCCCCcccH
Confidence 57 9999999999964
No 41
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=90.00 E-value=0.25 Score=37.84 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=11.4
Q ss_pred ceeEEecCccccC
Q 032222 3 DLYALDFDGVLCD 15 (145)
Q Consensus 3 ~llalDFDGVIcD 15 (145)
++++|||||||++
T Consensus 2 ~~v~FD~DGTL~~ 14 (205)
T PRK13582 2 EIVCLDLEGVLVP 14 (205)
T ss_pred eEEEEeCCCCChh
Confidence 4789999999994
No 42
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=89.38 E-value=0.15 Score=39.92 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=16.5
Q ss_pred ceeEEecCccccCCchhhHH
Q 032222 3 DLYALDFDGVLCDSCGESSL 22 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~ 22 (145)
++++||+|||+.||...|-.
T Consensus 8 ~~~v~d~dGv~tdg~~~~~~ 27 (169)
T TIGR02726 8 KLVILDVDGVMTDGRIVIND 27 (169)
T ss_pred eEEEEeCceeeECCeEEEcC
Confidence 48999999999999665554
No 43
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=89.30 E-value=2.4 Score=32.64 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=12.6
Q ss_pred eeEEecCccccCCc
Q 032222 4 LYALDFDGVLCDSC 17 (145)
Q Consensus 4 llalDFDGVIcDg~ 17 (145)
++.||+||||+|.-
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999974
No 44
>PLN02940 riboflavin kinase
Probab=89.13 E-value=0.36 Score=42.03 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=18.5
Q ss_pred ceeEEecCccccCCchhhHHHHHH-HHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVK-AAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~-a~~~ 30 (145)
+.++|||||||+|+..- +..+|+ ++.+
T Consensus 12 k~VIFDlDGTLvDt~~~-~~~a~~~~~~~ 39 (382)
T PLN02940 12 SHVILDLDGTLLNTDGI-VSDVLKAFLVK 39 (382)
T ss_pred CEEEECCcCcCCcCHHH-HHHHHHHHHHH
Confidence 35899999999999864 334443 4343
No 45
>PRK11590 hypothetical protein; Provisional
Probab=89.08 E-value=0.38 Score=37.92 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=16.9
Q ss_pred CceeEEecCccccCCchhhHHHHHHHH
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAVKAA 28 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~~a~ 28 (145)
.++.+|||||+|+++- +..+..+.+
T Consensus 6 ~k~~iFD~DGTL~~~d--~~~~~~~~~ 30 (211)
T PRK11590 6 RRVVFFDLDGTLHQQD--MFGSFLRYL 30 (211)
T ss_pred ceEEEEecCCCCcccc--hHHHHHHHH
Confidence 3589999999999544 444444444
No 46
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=88.63 E-value=0.24 Score=41.08 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=14.2
Q ss_pred eeEEecCccccCCchhhH
Q 032222 4 LYALDFDGVLCDSCGESS 21 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~ 21 (145)
|++|||||+|+|.=.-.+
T Consensus 2 LvvfDFD~TIvd~dsd~~ 19 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDW 19 (234)
T ss_pred EEEEeCCCCccCCccHHH
Confidence 789999999998753333
No 47
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=88.23 E-value=0.22 Score=37.03 Aligned_cols=13 Identities=46% Similarity=0.754 Sum_probs=10.9
Q ss_pred eeEEecCccccCC
Q 032222 4 LYALDFDGVLCDS 16 (145)
Q Consensus 4 llalDFDGVIcDg 16 (145)
|.+|||||||.+.
T Consensus 1 l~~fD~DgTl~~~ 13 (177)
T TIGR01488 1 LAIFDFDGTLTRQ 13 (177)
T ss_pred CEEecCccccccc
Confidence 5799999999853
No 48
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=88.07 E-value=0.39 Score=38.31 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.8
Q ss_pred ceeEEecCccccCCc
Q 032222 3 DLYALDFDGVLCDSC 17 (145)
Q Consensus 3 ~llalDFDGVIcDg~ 17 (145)
+.+.||+||||+|..
T Consensus 11 k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 11 DTVLLDMDGTLLDLA 25 (224)
T ss_pred CEEEEcCCCCccchh
Confidence 468999999999953
No 49
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=88.04 E-value=0.28 Score=35.25 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=12.6
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
++++||.||||||+
T Consensus 1 k~~~~D~dgtL~~~ 14 (132)
T TIGR01662 1 KGVVLDLDGTLTDD 14 (132)
T ss_pred CEEEEeCCCceecC
Confidence 47899999999997
No 50
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=87.87 E-value=0.77 Score=38.75 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=52.0
Q ss_pred CceeEEecCccccCCchhhHHHHHHHHHhhCCCCCCCCCcchHHHHHHhcccccCceeecccHHHHHHHHHhhccccccc
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~~a~~~~wp~~~~~~~~~~~~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~ 81 (145)
..|++||||-+|+|.=.-.|.+--. | .-+.|.+|||-++.|+=+-++-|.+-+.+..
T Consensus 13 ril~~FDFD~TIid~dSD~wVv~~l-------------p------~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheq---- 69 (256)
T KOG3120|consen 13 RILLVFDFDRTIIDQDSDNWVVDEL-------------P------TTDLFNQLRDTYPKGFWNELMDRVFKELHEQ---- 69 (256)
T ss_pred cEEEEEecCceeecCCcchHHHHhc-------------c------cchhHHHHHHhcccchHHHHHHHHHHHHHHc----
Confidence 4589999999999987666654311 1 2245678899999888888888888665522
Q ss_pred ccccCCCCHHHHHHhhhhh
Q 032222 82 SSVSEGLTVEGILENWSKI 100 (145)
Q Consensus 82 ~~~~~g~~~~~il~~w~~~ 100 (145)
|.+.++|-+-+.+|
T Consensus 70 -----gv~~~~ik~~~r~i 83 (256)
T KOG3120|consen 70 -----GVRIAEIKQVLRSI 83 (256)
T ss_pred -----CCCHHHHHHHHhcC
Confidence 88888888777664
No 51
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=87.37 E-value=0.27 Score=36.39 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.1
Q ss_pred eEEecCccccCCchhhHH
Q 032222 5 YALDFDGVLCDSCGESSL 22 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~ 22 (145)
++||+|||++|+...+..
T Consensus 2 vlFDlDgtLv~~~~~~~~ 19 (183)
T TIGR01509 2 ILFDLDGVLVDTSSAIEK 19 (183)
T ss_pred eeeccCCceechHHHHHH
Confidence 689999999999776554
No 52
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=87.35 E-value=0.43 Score=42.13 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=19.0
Q ss_pred ceeEEecCccccCCchhhHHHHH-HHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAV-KAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~-~a~~~ 30 (145)
+.+.|||||||+|+..=+. .+| +++.+
T Consensus 242 k~vIFDlDGTLiDs~~~~~-~a~~~~~~~ 269 (459)
T PRK06698 242 QALIFDMDGTLFQTDKILE-LSLDDTFDH 269 (459)
T ss_pred hheeEccCCceecchhHHH-HHHHHHHHH
Confidence 4679999999999986444 455 34433
No 53
>PLN02423 phosphomannomutase
Probab=87.16 E-value=0.55 Score=38.22 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCceeEEecCccccCCchhhHHHHHHHHHhh
Q 032222 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~E~~~sa~~a~~~~ 31 (145)
|.-|+|+|.||++.|+=.+..-...++.+++
T Consensus 6 ~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l 36 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRKEATPEMLEFMKEL 36 (245)
T ss_pred cceEEEEeccCCCcCCCCcCCHHHHHHHHHH
Confidence 3457889999999998777666555555543
No 54
>PRK10976 putative hydrolase; Provisional
Probab=87.09 E-value=0.58 Score=37.53 Aligned_cols=29 Identities=31% Similarity=0.244 Sum_probs=19.7
Q ss_pred CCceeEEecCccccCCchhhHHHHHHHHH
Q 032222 1 MADLYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
|=+|+|+|.||+++|+=.+..-...+|-+
T Consensus 1 mikli~~DlDGTLl~~~~~is~~~~~ai~ 29 (266)
T PRK10976 1 MYQVVASDLDGTLLSPDHTLSPYAKETLK 29 (266)
T ss_pred CceEEEEeCCCCCcCCCCcCCHHHHHHHH
Confidence 45799999999999875444443444333
No 55
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=86.65 E-value=0.31 Score=38.32 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.4
Q ss_pred eEEecCccccCC
Q 032222 5 YALDFDGVLCDS 16 (145)
Q Consensus 5 lalDFDGVIcDg 16 (145)
++|||||+|++.
T Consensus 2 ~~fDFDgTit~~ 13 (214)
T TIGR03333 2 IICDFDGTITNN 13 (214)
T ss_pred EEeccCCCCCcc
Confidence 789999999854
No 56
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=86.55 E-value=0.6 Score=34.83 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=15.5
Q ss_pred eEEecCccccCCchhhHHHHHH
Q 032222 5 YALDFDGVLCDSCGESSLSAVK 26 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~sa~~ 26 (145)
+.||+||||+|+.. ++..+++
T Consensus 2 viFD~DGTL~D~~~-~~~~~~~ 22 (175)
T TIGR01493 2 MVFDVYGTLVDVHG-GVRACLA 22 (175)
T ss_pred eEEecCCcCcccHH-HHHHHHH
Confidence 68999999999883 4444443
No 57
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=86.01 E-value=0.6 Score=33.51 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.4
Q ss_pred eEEecCccccCCch
Q 032222 5 YALDFDGVLCDSCG 18 (145)
Q Consensus 5 lalDFDGVIcDg~~ 18 (145)
++||+|||++|.-.
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 58999999999776
No 58
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=85.99 E-value=0.75 Score=37.16 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=20.3
Q ss_pred CCceeEEecCccccCCch---hhHHHHHHHHHh
Q 032222 1 MADLYALDFDGVLCDSCG---ESSLSAVKAAKV 30 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~---E~~~sa~~a~~~ 30 (145)
|=+|+++|.||+++++=. +...-|.+.+++
T Consensus 1 m~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~ 33 (272)
T PRK15126 1 MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRE 33 (272)
T ss_pred CccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHH
Confidence 568999999999998643 444444444443
No 59
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=85.97 E-value=0.72 Score=35.97 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=19.4
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+++++|+||++.|.=.+....+.+|-++
T Consensus 2 k~v~~DlDGTLl~~~~~i~~~~~~~i~~ 29 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRMISERAIEAIRK 29 (215)
T ss_pred cEEEEecCCCcCCCCcccCHHHHHHHHH
Confidence 5899999999998755454444444444
No 60
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=85.94 E-value=0.37 Score=36.83 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.7
Q ss_pred ceeEEecCccccCCch
Q 032222 3 DLYALDFDGVLCDSCG 18 (145)
Q Consensus 3 ~llalDFDGVIcDg~~ 18 (145)
+.+.||+||||+|...
T Consensus 2 k~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 2 KALVFDVYGTLFDVHS 17 (198)
T ss_pred cEEEEeCCCcCccHHH
Confidence 4689999999999873
No 61
>PRK09449 dUMP phosphatase; Provisional
Probab=85.46 E-value=0.79 Score=35.63 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=12.3
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
+.+.|||||||+|.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 56899999999984
No 62
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=84.71 E-value=0.91 Score=36.16 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=18.3
Q ss_pred CceeEEecCccccCCchhhHHHHHHH
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAVKA 27 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~~a 27 (145)
=+++|+|.||++.++-.+......+|
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~a 28 (272)
T PRK10530 3 YRVIALDLDGTLLTPKKTILPESLEA 28 (272)
T ss_pred ccEEEEeCCCceECCCCccCHHHHHH
Confidence 37999999999998754444333333
No 63
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=84.32 E-value=0.59 Score=37.66 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=13.8
Q ss_pred CCceeEEecCccccC
Q 032222 1 MADLYALDFDGVLCD 15 (145)
Q Consensus 1 ~~~llalDFDGVIcD 15 (145)
|.+|++||||||+.+
T Consensus 4 ~~~L~vFD~D~TLi~ 18 (212)
T COG0560 4 MKKLAVFDLDGTLIN 18 (212)
T ss_pred ccceEEEecccchhh
Confidence 567999999999999
No 64
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=84.12 E-value=0.9 Score=36.41 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=18.6
Q ss_pred CceeEEecCccccCCchhhHHHHHHHHH
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
-+++|+|.||+++++=.+......+|-+
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~ai~ 30 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDHTISPAVKQAIA 30 (270)
T ss_pred eEEEEEecCCcCcCCCCccCHHHHHHHH
Confidence 4799999999999864433333333333
No 65
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=83.99 E-value=0.63 Score=35.11 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.5
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
+++|+|.|||||+.
T Consensus 2 K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 2 KRLVMDLDNTITLT 15 (126)
T ss_pred CEEEEeCCCCcccC
Confidence 68999999999974
No 66
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=83.47 E-value=0.97 Score=34.69 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=12.1
Q ss_pred eeEEecCccccCCc
Q 032222 4 LYALDFDGVLCDSC 17 (145)
Q Consensus 4 llalDFDGVIcDg~ 17 (145)
|+++|+||+++++-
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 68999999999863
No 67
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=83.20 E-value=0.6 Score=37.64 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=12.3
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
.+++|||||+++.-
T Consensus 4 ~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 4 RAFFFDYDGTLSEI 17 (244)
T ss_pred EEEEEecCccccCC
Confidence 57999999999974
No 68
>PTZ00174 phosphomannomutase; Provisional
Probab=83.18 E-value=1 Score=36.30 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=19.5
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+|+|+|.||++.++=.+.+-...+|-++
T Consensus 6 klia~DlDGTLL~~~~~is~~~~~ai~~ 33 (247)
T PTZ00174 6 TILLFDVDGTLTKPRNPITQEMKDTLAK 33 (247)
T ss_pred eEEEEECcCCCcCCCCCCCHHHHHHHHH
Confidence 5899999999998866554444444333
No 69
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=83.15 E-value=0.59 Score=36.25 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=12.9
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
+++++|+|||+.|+
T Consensus 22 kli~~D~Dgtl~~~ 35 (183)
T PRK09484 22 RLLICDVDGVFSDG 35 (183)
T ss_pred eEEEEcCCeeeecC
Confidence 48999999999997
No 70
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=82.70 E-value=0.96 Score=35.01 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=15.0
Q ss_pred eEEecCccccCCchhhHHHHHH
Q 032222 5 YALDFDGVLCDSCGESSLSAVK 26 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~sa~~ 26 (145)
+++|+||+++|+-....-...+
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~ 22 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALE 22 (225)
T ss_pred CeEeccCccCCCCcccCHHHHH
Confidence 5899999999975444333333
No 71
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=82.27 E-value=1.5 Score=36.20 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=12.1
Q ss_pred ceeEEecCccccC
Q 032222 3 DLYALDFDGVLCD 15 (145)
Q Consensus 3 ~llalDFDGVIcD 15 (145)
.+++|||||++++
T Consensus 15 ~li~~D~DGTLl~ 27 (266)
T PRK10187 15 YAWFFDLDGTLAE 27 (266)
T ss_pred EEEEEecCCCCCC
Confidence 4899999999998
No 72
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=81.94 E-value=1.2 Score=35.62 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=17.5
Q ss_pred eeEEecCccccCCchhhHHHHHHHHH
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
|+++|.||+++|+-.+....+.++-+
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~ 26 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALA 26 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHH
Confidence 68999999999975444444443333
No 73
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=81.13 E-value=0.76 Score=35.04 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=11.9
Q ss_pred eeEEecCccccCCc
Q 032222 4 LYALDFDGVLCDSC 17 (145)
Q Consensus 4 llalDFDGVIcDg~ 17 (145)
+.+|||||+|.++=
T Consensus 1 ~a~FD~DgTL~~~~ 14 (202)
T TIGR01490 1 LAFFDFDGTLTAKD 14 (202)
T ss_pred CeEEccCCCCCCCc
Confidence 46899999999963
No 74
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=80.55 E-value=0.95 Score=33.80 Aligned_cols=13 Identities=54% Similarity=0.777 Sum_probs=11.9
Q ss_pred eEEecCccccCCc
Q 032222 5 YALDFDGVLCDSC 17 (145)
Q Consensus 5 lalDFDGVIcDg~ 17 (145)
.+|||||||.++-
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 4799999999998
No 75
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=79.90 E-value=1.6 Score=43.18 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=18.1
Q ss_pred eeEEecCccccCCchhhHHHHHH-HHHh
Q 032222 4 LYALDFDGVLCDSCGESSLSAVK-AAKV 30 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~-a~~~ 30 (145)
.+.|||||||+|+..-+. .||+ ++++
T Consensus 77 aVIFDlDGTLiDS~~~~~-~a~~~~~~~ 103 (1057)
T PLN02919 77 AVLFDMDGVLCNSEEPSR-RAAVDVFAE 103 (1057)
T ss_pred EEEECCCCCeEeChHHHH-HHHHHHHHH
Confidence 579999999999975443 4444 4444
No 76
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=79.14 E-value=1.7 Score=36.82 Aligned_cols=28 Identities=29% Similarity=0.238 Sum_probs=20.9
Q ss_pred eeEEecCccccCCchhhHHHHHHHHHhhC
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAKVRW 32 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~~~w 32 (145)
.++||.||||.+|..= .-.|.+|.+.+-
T Consensus 2 ~~ifD~DGvL~~g~~~-i~ga~eal~~L~ 29 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKP-IAGASDALRRLN 29 (321)
T ss_pred EEEEeCcCceECCccc-cHHHHHHHHHHh
Confidence 3789999999999644 556666666664
No 77
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=78.66 E-value=1.9 Score=34.60 Aligned_cols=29 Identities=38% Similarity=0.415 Sum_probs=20.6
Q ss_pred CCceeEEecCccccCCchhhHHHHHHHHH
Q 032222 1 MADLYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
|-+++|+|.||+++++=.+.......|-+
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~ 30 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPETKEALA 30 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHHHHHHH
Confidence 44799999999999987654444444443
No 78
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=76.75 E-value=2.2 Score=32.44 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=15.7
Q ss_pred eEEecCccccCCchhhHHHHHHHH
Q 032222 5 YALDFDGVLCDSCGESSLSAVKAA 28 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~sa~~a~ 28 (145)
+++|+||+++++-.+......+|.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al 24 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEAL 24 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHH
T ss_pred cEEEECCceecCCCeeCHHHHHHH
Confidence 589999999996554443333333
No 79
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=76.24 E-value=2.6 Score=34.31 Aligned_cols=30 Identities=40% Similarity=0.375 Sum_probs=20.9
Q ss_pred CCceeEEecCccccCC---chhhHHHHHHHHHh
Q 032222 1 MADLYALDFDGVLCDS---CGESSLSAVKAAKV 30 (145)
Q Consensus 1 ~~~llalDFDGVIcDg---~~E~~~sa~~a~~~ 30 (145)
|-+++++|.||+++|+ ..+....+.+.+++
T Consensus 3 ~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~ 35 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHHTYSYEPAKPALKALKE 35 (273)
T ss_pred cceEEEEcCcccCcCCCCcCcHHHHHHHHHHHH
Confidence 5689999999999983 44444455555544
No 80
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=76.22 E-value=1.7 Score=31.88 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=12.9
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
+++|+|+||++.++
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 58999999999998
No 81
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=73.87 E-value=1.7 Score=33.39 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.1
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
+|.+||+||||+--
T Consensus 1 Kia~fD~DgTLi~~ 14 (159)
T PF08645_consen 1 KIAFFDLDGTLIKT 14 (159)
T ss_dssp SEEEE-SCTTTEE-
T ss_pred CEEEEeCCCCccCC
Confidence 58999999998643
No 82
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=73.33 E-value=1.9 Score=34.57 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=46.5
Q ss_pred ceeEEecCccccCCchhhHHHH--HHHHHhhCCCCCCCCCcchHHHHHHhcccccCceeecccHHHHHHHHHhhcccccc
Q 032222 3 DLYALDFDGVLCDSCGESSLSA--VKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa--~~a~~~~wp~~~~~~~~~~~~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~ 80 (145)
+|+.||-|||+.||-.=|-.-+ .|+++.+ ++ .--.-+.+ .-.++-|-||=..+++-+-.-+...+..
T Consensus 9 kLli~DVDGvLTDG~ly~~~~Gee~KaFnv~-----DG---~Gik~l~~--~Gi~vAIITGr~s~ive~Ra~~LGI~~~- 77 (170)
T COG1778 9 KLLILDVDGVLTDGKLYYDENGEEIKAFNVR-----DG---HGIKLLLK--SGIKVAIITGRDSPIVEKRAKDLGIKHL- 77 (170)
T ss_pred eEEEEeccceeecCeEEEcCCCceeeeeecc-----Cc---HHHHHHHH--cCCeEEEEeCCCCHHHHHHHHHcCCcee-
Confidence 6899999999999975433211 2333332 11 00000111 1346677788777766554432221111
Q ss_pred cccccCCCCHHHHHHhhhhhhHHHHHhcCCCHHHH
Q 032222 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDAL 115 (145)
Q Consensus 81 ~~~~~~g~~~~~il~~w~~~~~~~l~~~~~~~~~L 115 (145)
-.+.++=+ ..+..++++.|+++++.
T Consensus 78 ------~qG~~dK~----~a~~~L~~~~~l~~e~~ 102 (170)
T COG1778 78 ------YQGISDKL----AAFEELLKKLNLDPEEV 102 (170)
T ss_pred ------eechHhHH----HHHHHHHHHhCCCHHHh
Confidence 01122222 24455677788887764
No 83
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=72.48 E-value=3.5 Score=33.51 Aligned_cols=28 Identities=29% Similarity=0.112 Sum_probs=18.1
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
+++++|.||++.|+=.+-...+.+|-++
T Consensus 8 ~lI~~DlDGTLL~~~~~i~~~~~~ai~~ 35 (271)
T PRK03669 8 LLIFTDLDGTLLDSHTYDWQPAAPWLTR 35 (271)
T ss_pred eEEEEeCccCCcCCCCcCcHHHHHHHHH
Confidence 5899999999998743333334444333
No 84
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=72.06 E-value=5.2 Score=38.89 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=35.5
Q ss_pred CCceeEEecCccccCCc------hhhHHHHHHHHHhhCCCC-CCCCCcchHHHHHHhcccccC---ceeecccH
Q 032222 1 MADLYALDFDGVLCDSC------GESSLSAVKAAKVRWPGL-FDGVDSVIEDWIVDQMHILRP---VVETGYEN 64 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~------~E~~~sa~~a~~~~wp~~-~~~~~~~~~~~i~~~Fr~lRP---vVetGwEm 64 (145)
+..+++|||||++++.. .+......+..+.. |.. +.-++....+.+.+-|..+.+ +-|||.+.
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d-~g~~VaIvSGR~~~~L~~~f~~~~~l~laaEHG~~i 667 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRD-KNNMVFIVSARSRKTLADWFSPCEKLGIAAEHGYFL 667 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhc-CCCEEEEEeCCCHHHHHHHhCCCCCeEEEEeCCEEE
Confidence 35799999999999554 23444455443221 221 111333445667777766532 45777763
No 85
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=71.75 E-value=1.7 Score=32.79 Aligned_cols=14 Identities=57% Similarity=0.833 Sum_probs=12.6
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
++++||.|||+.|+
T Consensus 2 ~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 2 RLLILDVDGVLTDG 15 (154)
T ss_pred eEEEEeCceeEEcC
Confidence 57899999999995
No 86
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=71.52 E-value=1.8 Score=35.24 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.5
Q ss_pred eEEecCccccCCc
Q 032222 5 YALDFDGVLCDSC 17 (145)
Q Consensus 5 lalDFDGVIcDg~ 17 (145)
+++|.||||||--
T Consensus 9 ~ciDIDGtit~~~ 21 (194)
T COG5663 9 CCIDIDGTITDDP 21 (194)
T ss_pred eeeccCCceecCc
Confidence 5899999999975
No 87
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=70.33 E-value=2.3 Score=35.09 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=13.6
Q ss_pred eeEEecCccccCCch
Q 032222 4 LYALDFDGVLCDSCG 18 (145)
Q Consensus 4 llalDFDGVIcDg~~ 18 (145)
.+.||+||+++|+-.
T Consensus 65 aViFDlDgTLlDSs~ 79 (237)
T TIGR01672 65 AVSFDIDDTVLFSSP 79 (237)
T ss_pred EEEEeCCCccccCcH
Confidence 578999999999986
No 88
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=70.30 E-value=13 Score=26.03 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.0
Q ss_pred CCCCHHHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHH
Q 032222 86 EGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDE 125 (145)
Q Consensus 86 ~g~~~~~il~~w~~~~~~~l~~~~~~~~~L~~~~~~vRd~ 125 (145)
.|.+.++|+++|+. ++++++.+++.=..+.
T Consensus 42 ~G~s~eeil~dyp~----------Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 42 AGESIEEILADYPD----------LTLEDIRAALRYAADR 71 (79)
T ss_pred CCCCHHHHHHhCCC----------CCHHHHHHHHHHHHHH
Confidence 39999999999987 4889999998866555
No 89
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=70.04 E-value=8.3 Score=24.77 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=15.0
Q ss_pred CCCHHHHHHhhhhhhHHHHHhcCCCHHHHHHHHH
Q 032222 87 GLTVEGILENWSKIKPVIMEDWSENRDALVDLFG 120 (145)
Q Consensus 87 g~~~~~il~~w~~~~~~~l~~~~~~~~~L~~~~~ 120 (145)
|.++++|+++|+.+ +.+++.+++.
T Consensus 31 G~s~eeI~~~yp~L----------t~~~i~aAl~ 54 (56)
T PF04255_consen 31 GESPEEIAEDYPSL----------TLEDIRAALA 54 (56)
T ss_dssp T--HHHHHHHSTT------------HHHHHHHHH
T ss_pred CCCHHHHHHHCCCC----------CHHHHHHHHH
Confidence 78888888888774 6677777653
No 90
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=69.28 E-value=2.8 Score=31.04 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.8
Q ss_pred ceeEEecCccccCCch
Q 032222 3 DLYALDFDGVLCDSCG 18 (145)
Q Consensus 3 ~llalDFDGVIcDg~~ 18 (145)
+.++||+|||+.+.-.
T Consensus 1 ~~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 1 PALFLDRDGVINEDTV 16 (147)
T ss_pred CeEEEeCCCceeccCC
Confidence 4689999999999875
No 91
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=69.10 E-value=4 Score=32.76 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=17.7
Q ss_pred eeEEecCccccCCch---hhHHHHHHHHHh
Q 032222 4 LYALDFDGVLCDSCG---ESSLSAVKAAKV 30 (145)
Q Consensus 4 llalDFDGVIcDg~~---E~~~sa~~a~~~ 30 (145)
|+++|+||++.++-. +....+.+.+++
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i~~l~~ 30 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVLERLQE 30 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHHHHHHH
Confidence 589999999999754 333344444443
No 92
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=68.64 E-value=4.8 Score=32.88 Aligned_cols=28 Identities=36% Similarity=0.245 Sum_probs=19.5
Q ss_pred ceeEEecCccccCC------chhhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDS------CGESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg------~~E~~~sa~~a~~~ 30 (145)
++++||.|||+.+| ..+-..-+.+..++
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~ 35 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRG 35 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHH
Confidence 57899999999997 34444445555544
No 93
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=68.22 E-value=2.6 Score=29.98 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=11.9
Q ss_pred eEEecCccccCCch
Q 032222 5 YALDFDGVLCDSCG 18 (145)
Q Consensus 5 lalDFDGVIcDg~~ 18 (145)
++||.||||.+|-.
T Consensus 1 ~l~D~dGvl~~g~~ 14 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE 14 (101)
T ss_dssp EEEESTTTSEETTE
T ss_pred CEEeCccEeEeCCC
Confidence 57999999998764
No 94
>PLN02580 trehalose-phosphatase
Probab=67.20 E-value=2.9 Score=37.13 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=11.1
Q ss_pred ceeEEecCccccC
Q 032222 3 DLYALDFDGVLCD 15 (145)
Q Consensus 3 ~llalDFDGVIcD 15 (145)
.+++|||||+++.
T Consensus 120 ~~LfLDyDGTLaP 132 (384)
T PLN02580 120 IALFLDYDGTLSP 132 (384)
T ss_pred eEEEEecCCccCC
Confidence 3789999999975
No 95
>PLN02887 hydrolase family protein
Probab=66.96 E-value=5.3 Score=37.23 Aligned_cols=29 Identities=31% Similarity=0.256 Sum_probs=20.1
Q ss_pred CceeEEecCccccCCchhhHHHHHHHHHh
Q 032222 2 ADLYALDFDGVLCDSCGESSLSAVKAAKV 30 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa~~a~~~ 30 (145)
=+++|+|.||++.|+-.+......+|-++
T Consensus 308 iKLIa~DLDGTLLn~d~~Is~~t~eAI~k 336 (580)
T PLN02887 308 FSYIFCDMDGTLLNSKSQISETNAKALKE 336 (580)
T ss_pred ccEEEEeCCCCCCCCCCccCHHHHHHHHH
Confidence 36899999999999755444444444433
No 96
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=66.72 E-value=6.2 Score=31.65 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=11.6
Q ss_pred eeEEecCccccCC
Q 032222 4 LYALDFDGVLCDS 16 (145)
Q Consensus 4 llalDFDGVIcDg 16 (145)
|+++|+|||+.++
T Consensus 1 li~~DlDGTLl~~ 13 (225)
T TIGR02461 1 VIFTDLDGTLLPP 13 (225)
T ss_pred CEEEeCCCCCcCC
Confidence 5899999999984
No 97
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=65.93 E-value=5.9 Score=33.99 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=13.9
Q ss_pred ceeEEecCccccCCchhhHH
Q 032222 3 DLYALDFDGVLCDSCGESSL 22 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~ 22 (145)
.+++||||||+. ..|++.
T Consensus 111 ~LvvfDmDGTLI--~~e~i~ 128 (322)
T PRK11133 111 GLLVMDMDSTAI--QIECID 128 (322)
T ss_pred CEEEEECCCCCc--chHHHH
Confidence 589999999998 345544
No 98
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=63.87 E-value=4.1 Score=31.31 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.6
Q ss_pred CceeEEecCccccCCchh
Q 032222 2 ADLYALDFDGVLCDSCGE 19 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E 19 (145)
-+.+.||+|||+.|.-..
T Consensus 4 ~k~i~FD~d~TL~d~~~~ 21 (229)
T COG1011 4 IKAILFDLDGTLLDFDSA 21 (229)
T ss_pred eeEEEEecCCcccccchH
Confidence 457899999999997543
No 99
>PLN03017 trehalose-phosphatase
Probab=63.39 E-value=6.3 Score=34.91 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=10.9
Q ss_pred ceeEEecCcccc
Q 032222 3 DLYALDFDGVLC 14 (145)
Q Consensus 3 ~llalDFDGVIc 14 (145)
-+++|||||+++
T Consensus 112 ~llflD~DGTL~ 123 (366)
T PLN03017 112 IVMFLDYDGTLS 123 (366)
T ss_pred eEEEEecCCcCc
Confidence 478999999999
No 100
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=62.92 E-value=3.7 Score=35.04 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=14.3
Q ss_pred eEEecCccccCCchhhH
Q 032222 5 YALDFDGVLCDSCGESS 21 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~ 21 (145)
+|||||||+.+-..|--
T Consensus 124 IAFDgDaVLfsDesE~v 140 (264)
T PF06189_consen 124 IAFDGDAVLFSDESERV 140 (264)
T ss_pred EEEcCCeEeecCcchHh
Confidence 69999999999877643
No 101
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=62.53 E-value=3.6 Score=32.76 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=24.1
Q ss_pred EEecCccccCCchh--------hHHHHHHHHHhhCCCCCCCCCcchHHHHHHhcccccCce---eecccH
Q 032222 6 ALDFDGVLCDSCGE--------SSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVV---ETGYEN 64 (145)
Q Consensus 6 alDFDGVIcDg~~E--------~~~sa~~a~~~~wp~~~~~~~~~~~~~i~~~Fr~lRPvV---etGwEm 64 (145)
.|||||||++-... ......++-+..-+...--++....+. .+.|..+.++. +||.|.
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~-~~~~~~~~~i~l~gehG~e~ 69 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD-LERFGGIPNIGLAGEHGAEI 69 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH-HHHH-S-SS-EEEEGGGTEE
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH-hHHhcCCCCceEEEEeeEEe
Confidence 48999999987652 222333333332221111122233344 77777666653 677766
No 102
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=61.86 E-value=7.8 Score=29.09 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred ceeEEecCccccCCchhh
Q 032222 3 DLYALDFDGVLCDSCGES 20 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~ 20 (145)
+.++||.||+|.++-...
T Consensus 2 ~~i~fDktGTLt~~~~~v 19 (215)
T PF00702_consen 2 DAICFDKTGTLTQGKMSV 19 (215)
T ss_dssp SEEEEECCTTTBESHHEE
T ss_pred eEEEEecCCCcccCeEEE
Confidence 468999999999996655
No 103
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=61.76 E-value=4.9 Score=32.30 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=16.4
Q ss_pred eEEecCccccCCchhhHHHHHHHH
Q 032222 5 YALDFDGVLCDSCGESSLSAVKAA 28 (145)
Q Consensus 5 lalDFDGVIcDg~~E~~~sa~~a~ 28 (145)
++||.||||.||-.-+. .|-++.
T Consensus 1 ~lfD~DGvL~~~~~~~~-~a~e~i 23 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIP-GAAEAL 23 (236)
T ss_pred CEEeCcCccCcCCccCc-CHHHHH
Confidence 47999999999976555 333333
No 104
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=61.54 E-value=7.2 Score=29.81 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=12.3
Q ss_pred eeEEecCccccCCc
Q 032222 4 LYALDFDGVLCDSC 17 (145)
Q Consensus 4 llalDFDGVIcDg~ 17 (145)
++++|.||+|.++=
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 57999999999875
No 105
>PRK10444 UMP phosphatase; Provisional
Probab=60.97 E-value=4.7 Score=33.05 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.2
Q ss_pred ceeEEecCccccCCc
Q 032222 3 DLYALDFDGVLCDSC 17 (145)
Q Consensus 3 ~llalDFDGVIcDg~ 17 (145)
++++||.||||.+|-
T Consensus 2 ~~v~~DlDGtL~~~~ 16 (248)
T PRK10444 2 KNVICDIDGVLMHDN 16 (248)
T ss_pred cEEEEeCCCceEeCC
Confidence 478999999999984
No 106
>PLN02151 trehalose-phosphatase
Probab=60.20 E-value=4.8 Score=35.45 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=10.9
Q ss_pred ceeEEecCcccc
Q 032222 3 DLYALDFDGVLC 14 (145)
Q Consensus 3 ~llalDFDGVIc 14 (145)
.+++|||||+++
T Consensus 99 ~ll~lDyDGTL~ 110 (354)
T PLN02151 99 IVMFLDYDGTLS 110 (354)
T ss_pred eEEEEecCccCC
Confidence 478999999999
No 107
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=59.11 E-value=3.5 Score=31.71 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.3
Q ss_pred ceeEEecCccccCCch
Q 032222 3 DLYALDFDGVLCDSCG 18 (145)
Q Consensus 3 ~llalDFDGVIcDg~~ 18 (145)
++++||.|||+-+-..
T Consensus 2 ~~~~~d~dg~l~~~~~ 17 (161)
T TIGR01261 2 KILFIDRDGTLIEEPP 17 (161)
T ss_pred CEEEEeCCCCccccCC
Confidence 6899999999988443
No 108
>PLN02645 phosphoglycolate phosphatase
Probab=58.88 E-value=5.2 Score=33.59 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=17.4
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHH
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
++++||.|||+.+|-. -.-.+-++-+
T Consensus 29 ~~~~~D~DGtl~~~~~-~~~ga~e~l~ 54 (311)
T PLN02645 29 ETFIFDCDGVIWKGDK-LIEGVPETLD 54 (311)
T ss_pred CEEEEeCcCCeEeCCc-cCcCHHHHHH
Confidence 4789999999999753 3333444443
No 109
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=57.93 E-value=10 Score=29.96 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=31.1
Q ss_pred eeEEecCccccCCchhhHHHHHHHHHhh-CCCC-CCCCCcchHHHHHHhcccc---cC---ceeecccH
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAKVR-WPGL-FDGVDSVIEDWIVDQMHIL---RP---VVETGYEN 64 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~~~-wp~~-~~~~~~~~~~~i~~~Fr~l---RP---vVetGwEm 64 (145)
|+++|+||++.|.- .-++...++.+. -.+. +.-....+...+.+.|..+ .| +-.+|-++
T Consensus 1 li~~DlDgTLl~~~--~~~~~~~~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i 67 (236)
T TIGR02471 1 LIITDLDNTLLGDD--EGLASFVELLRGSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEI 67 (236)
T ss_pred CeEEeccccccCCH--HHHHHHHHHHHhcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceE
Confidence 58999999999953 334443333332 1121 1112234456666666555 35 34555543
No 110
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=56.84 E-value=5.9 Score=31.47 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=12.3
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
.|.+||+|||+.++
T Consensus 2 ~la~FDlD~TLi~~ 15 (203)
T TIGR02137 2 EIACLDLEGVLVPE 15 (203)
T ss_pred eEEEEeCCcccHHH
Confidence 36899999999986
No 111
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=56.62 E-value=10 Score=35.58 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=32.3
Q ss_pred ceeEEecCccccCC--------chhhHHHHHHHHHhhCCCCC-CCCCcchHHHHHHhccccc--CceeecccH
Q 032222 3 DLYALDFDGVLCDS--------CGESSLSAVKAAKVRWPGLF-DGVDSVIEDWIVDQMHILR--PVVETGYEN 64 (145)
Q Consensus 3 ~llalDFDGVIcDg--------~~E~~~sa~~a~~~~wp~~~-~~~~~~~~~~i~~~Fr~lR--PvVetGwEm 64 (145)
++++||+||++++- ..+-...+.+..+.. |... --++....+.+..-|..+. -+-|+|.+.
T Consensus 493 rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d-~g~~V~ivSGR~~~~l~~~~~~~~l~liaenG~~i 564 (726)
T PRK14501 493 RLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAAD-PNTDVAIISGRDRDTLERWFGDLPIHLVAEHGAWS 564 (726)
T ss_pred eEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcC-CCCeEEEEeCCCHHHHHHHhCCCCeEEEEeCCEEE
Confidence 68999999999972 334445555544442 2221 1122233455655555442 234666553
No 112
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=56.06 E-value=6.5 Score=32.27 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=18.3
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHhh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~~ 31 (145)
++++||.|||+++|-..+- .+.++-+++
T Consensus 3 ~~~~~D~DGtl~~~~~~~~-ga~e~l~~L 30 (279)
T TIGR01452 3 QGFIFDCDGVLWLGERVVP-GAPELLDRL 30 (279)
T ss_pred cEEEEeCCCceEcCCeeCc-CHHHHHHHH
Confidence 4789999999998754332 244444443
No 113
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=55.51 E-value=11 Score=32.68 Aligned_cols=29 Identities=28% Similarity=0.088 Sum_probs=20.5
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHHhh
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~~~ 31 (145)
+|+++|.||++.|.-...+-.+..|-+++
T Consensus 2 KLIftDLDGTLLd~~~~~~~~a~~aL~~L 30 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFNSYGAARQALAAL 30 (302)
T ss_pred cEEEEeCCCCCcCCCCcCCHHHHHHHHHH
Confidence 58999999999996655555555444443
No 114
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=55.49 E-value=6.8 Score=31.79 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=17.9
Q ss_pred ceeEEecCccccCCchhhHHHHHHHHH
Q 032222 3 DLYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
+.++||.|||+.+|-...- .|.++-+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~-~a~~~l~ 27 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIP-EAETFVH 27 (249)
T ss_pred CEEEEeCCCceEcCCeeCc-CHHHHHH
Confidence 5789999999999865443 3444433
No 115
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=55.06 E-value=14 Score=28.61 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=18.1
Q ss_pred eeEEecCccccCCch---hhHHHHHHHHHh
Q 032222 4 LYALDFDGVLCDSCG---ESSLSAVKAAKV 30 (145)
Q Consensus 4 llalDFDGVIcDg~~---E~~~sa~~a~~~ 30 (145)
++|+|.||++.++=. +-...+.+.+++
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~l~~l~~ 30 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPWLTRLQE 30 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHHHHHHHH
Confidence 589999999999632 224455555554
No 116
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=53.88 E-value=23 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.2
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHHH
Q 032222 99 KIKPVIMEDWSENRDALVDLFGKVR 123 (145)
Q Consensus 99 ~~~~~~l~~~~~~~~~L~~~~~~vR 123 (145)
.....++++.|.+++++.+.+.+.|
T Consensus 28 ~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 28 SIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4778899999999999999998876
No 117
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=53.82 E-value=5.6 Score=29.47 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=13.5
Q ss_pred ceeEEecCccccCCchh
Q 032222 3 DLYALDFDGVLCDSCGE 19 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E 19 (145)
++++||.||+++.+...
T Consensus 1 k~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEEE-CTTTEEEESS
T ss_pred CEEEEeCCCcEEEEeec
Confidence 47999999999998754
No 118
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=50.10 E-value=9 Score=32.42 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=13.3
Q ss_pred CceeEEecCccccCCc
Q 032222 2 ADLYALDFDGVLCDSC 17 (145)
Q Consensus 2 ~~llalDFDGVIcDg~ 17 (145)
.+++.|||||++.+..
T Consensus 18 ~~~~~lDyDGTl~~i~ 33 (266)
T COG1877 18 KRLLFLDYDGTLTEIV 33 (266)
T ss_pred ceEEEEeccccccccc
Confidence 3589999999998765
No 119
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=50.02 E-value=9.5 Score=34.87 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=12.1
Q ss_pred CceeEEecCccccC
Q 032222 2 ADLYALDFDGVLCD 15 (145)
Q Consensus 2 ~~llalDFDGVIcD 15 (145)
+++.+|||||+|.-
T Consensus 22 ~~~~~FDfDGTLt~ 35 (497)
T PLN02177 22 NQTVAADLDGTLLI 35 (497)
T ss_pred ccEEEEecCCcccC
Confidence 46799999999985
No 120
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=49.45 E-value=20 Score=28.60 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=16.0
Q ss_pred eeEEecCccccC---CchhhHHHHHHH
Q 032222 4 LYALDFDGVLCD---SCGESSLSAVKA 27 (145)
Q Consensus 4 llalDFDGVIcD---g~~E~~~sa~~a 27 (145)
+++.|+||++.| +-.+..--.+.+
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~ 29 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNAL 29 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHH
Confidence 788999999997 554444333333
No 121
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=48.18 E-value=11 Score=28.63 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=12.6
Q ss_pred CCceeEEecCcccc
Q 032222 1 MADLYALDFDGVLC 14 (145)
Q Consensus 1 ~~~llalDFDGVIc 14 (145)
|.+++.||-||||.
T Consensus 2 ~~~~~~~d~~~t~~ 15 (181)
T PRK08942 2 SMKAIFLDRDGVIN 15 (181)
T ss_pred CccEEEEECCCCcc
Confidence 78999999999984
No 122
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=47.61 E-value=11 Score=30.71 Aligned_cols=18 Identities=44% Similarity=0.586 Sum_probs=15.1
Q ss_pred ceeEEecCccccCCchhh
Q 032222 3 DLYALDFDGVLCDSCGES 20 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~ 20 (145)
.|+|-||||+++||-.+.
T Consensus 3 ~ll~sDlD~Tl~~~~~~~ 20 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDDEA 20 (247)
T ss_dssp EEEEEETBTTTBHCHHHH
T ss_pred EEEEEECCCCCcCCCHHH
Confidence 689999999999776654
No 123
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=47.25 E-value=10 Score=36.44 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=12.2
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
.+++|||||+++.-
T Consensus 508 rll~LDyDGTL~~~ 521 (797)
T PLN03063 508 RLLILGFYGTLTEP 521 (797)
T ss_pred eEEEEecCccccCC
Confidence 58999999999954
No 124
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=47.13 E-value=11 Score=28.86 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.6
Q ss_pred CceeEEecCccccCCc
Q 032222 2 ADLYALDFDGVLCDSC 17 (145)
Q Consensus 2 ~~llalDFDGVIcDg~ 17 (145)
-++++||-||||++.-
T Consensus 13 ~k~~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 13 SKVAAFDLDGTLITTR 28 (166)
T ss_pred CcEEEEeCCCceEecC
Confidence 5789999999999754
No 125
>PF01701 PSI_PsaJ: Photosystem I reaction centre subunit IX / PsaJ; InterPro: IPR002615 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This family consists of the photosystem I reaction centre subunit IX or PsaJ from various organisms including Synechocystis sp. (strain PCC 6803), Pinus thunbergii (Green pine) and Zea mays (Maize). PsaJ (P19443 from SWISSPROT) is a small 4.4kDa, chloroplast encoded, hydrophobic subunit of the photosystem I reaction complex whose function is not yet fully understood []. PsaJ can be cross-linked to PsaF (P12356 from SWISSPROT) and has a single predicted transmembrane domain. It has a proposed role in maintaing PsaF in the correct orientation to allow for fast electron transfer from soluble donor proteins to P700+ [].; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_J 2WSC_J 2O01_J 2WSE_J 1JB0_J 3PCQ_J 3LW5_J.
Probab=45.55 E-value=7.8 Score=23.81 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=9.4
Q ss_pred HHHHhcCCCCCCC
Q 032222 132 TTWIGANRYFKQA 144 (145)
Q Consensus 132 ~~WL~lhr~YpGV 144 (145)
.-++..|||||..
T Consensus 24 g~lIEiNRffPD~ 36 (37)
T PF01701_consen 24 GILIEINRFFPDL 36 (37)
T ss_dssp GTTSSSTTTSTS-
T ss_pred HHHHHHHHhCCCc
Confidence 3467889999974
No 126
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=45.00 E-value=12 Score=29.22 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=11.0
Q ss_pred CceeEEecCcccc
Q 032222 2 ADLYALDFDGVLC 14 (145)
Q Consensus 2 ~~llalDFDGVIc 14 (145)
.++|++||||=|=
T Consensus 98 ~r~~VldF~Gdi~ 110 (155)
T PF08496_consen 98 PRLFVLDFKGDIK 110 (155)
T ss_pred CeEEEEecCCCcc
Confidence 3699999999884
No 127
>PRK08238 hypothetical protein; Validated
Probab=44.73 E-value=16 Score=33.15 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.0
Q ss_pred eeEEecCccc--cCCchhhHHHHH
Q 032222 4 LYALDFDGVL--CDSCGESSLSAV 25 (145)
Q Consensus 4 llalDFDGVI--cDg~~E~~~sa~ 25 (145)
-+++|.||++ .|++-|+++...
T Consensus 12 pl~~DlDgTLi~td~l~e~~~~~l 35 (479)
T PRK08238 12 PLVVDLDGTLIRTDLLHESIFALL 35 (479)
T ss_pred CEEEeCCCCccccchHHHHHHHHH
Confidence 5899999999 899999997644
No 128
>PLN02811 hydrolase
Probab=44.70 E-value=16 Score=28.56 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=13.8
Q ss_pred cCccccCCchhhHHHHHHHHH
Q 032222 9 FDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 9 FDGVIcDg~~E~~~sa~~a~~ 29 (145)
|||||+|+..- +..+|+.+.
T Consensus 1 ~DGTL~Ds~~~-~~~a~~~~~ 20 (220)
T PLN02811 1 MDGLLLDTEKF-YTEVQEKIL 20 (220)
T ss_pred CCCcceecHHH-HHHHHHHHH
Confidence 79999999854 444654443
No 129
>PF08678 Rsbr_N: Rsbr N terminal; InterPro: IPR014792 Rsbr is a regulator of the RNA polymerase sigma factor subunit sigma(B). The structure of the N-terminal domain belongs to the globin fold superfamily []. ; PDB: 2BNL_A.
Probab=43.73 E-value=43 Score=25.62 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=32.8
Q ss_pred ceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 032222 57 VVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMD 128 (145)
Q Consensus 57 vVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~~~l~~~~~~~~~L~~~~~~vRd~wi~ 128 (145)
+|..||=.-++.+.| +.+.+++-..|.+.+.+..+..+.|-++ |+||.
T Consensus 67 ~VqlGwpL~flT~GL-----------------------~~F~kvvy~~m~~~~~~~~~~~e~~~ei-d~Wi~ 114 (129)
T PF08678_consen 67 VVQLGWPLKFLTKGL-----------------------QEFRKVVYETMNEEEIDDQQSSELFWEI-DSWID 114 (129)
T ss_dssp HHHTT--HHHHHHHH-----------------------HHHHHHHHHHHHHT--TT--HHHHHHHH-HHHHH
T ss_pred HHHcCccHHHHHHHH-----------------------HHHHHHHHHHHHhcccchHHHHHHHHHH-HHHHh
Confidence 466788777766655 3456888888999998899999999999 88885
No 130
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=42.06 E-value=14 Score=36.63 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=12.1
Q ss_pred ceeEEecCccccCC
Q 032222 3 DLYALDFDGVLCDS 16 (145)
Q Consensus 3 ~llalDFDGVIcDg 16 (145)
.+++|||||+++.-
T Consensus 592 RLlfLDyDGTLap~ 605 (934)
T PLN03064 592 RLLILGFNATLTEP 605 (934)
T ss_pred eEEEEecCceeccC
Confidence 58999999999963
No 131
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=42.05 E-value=45 Score=24.22 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=35.6
Q ss_pred ecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 032222 60 TGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMD 128 (145)
Q Consensus 60 tGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~~~l~~~~~~~~~L~~~~~~vRd~wi~ 128 (145)
+-++.+=|+|+++.-++. -+..+|-+ -...+|+.||++.++| |.++|.=|-.
T Consensus 24 ~d~~L~eLARL~iRY~gF----------PGA~diq~----DL~kiL~~W~lteeeL---f~kTR~I~~~ 75 (90)
T PF11691_consen 24 TDYNLAELARLRIRYQGF----------PGARDIQK----DLDKILQKWGLTEEEL---FEKTREIHAS 75 (90)
T ss_pred CchhHHHHHHHHHHhcCC----------CCHHHHHH----HHHHHHHHcCCCHHHH---HHHHHHHHHc
Confidence 556666688888774421 12666644 4567899999999876 6778877754
No 132
>PHA01886 TM2 domain-containing protein
Probab=41.91 E-value=10 Score=26.82 Aligned_cols=13 Identities=15% Similarity=0.646 Sum_probs=11.6
Q ss_pred HHHHHhcCCCCCC
Q 032222 131 LTTWIGANRYFKQ 143 (145)
Q Consensus 131 ~~~WL~lhr~YpG 143 (145)
+-+++++||||-|
T Consensus 13 flG~~G~HRFYlG 25 (78)
T PHA01886 13 FLGFFGIHRFYTG 25 (78)
T ss_pred HHhhcccchhhcC
Confidence 6789999999976
No 133
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=41.30 E-value=93 Score=22.28 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=44.2
Q ss_pred HHHHHhcccccCceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhHHHHHhcCCCH-HHHHHHHHHH
Q 032222 45 DWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENR-DALVDLFGKV 122 (145)
Q Consensus 45 ~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~~~l~~~~~~~-~~L~~~~~~v 122 (145)
..+..+.-.+-|.=|..|.. +++++... -.....++-|.+.+..+.++.|.+| .++++.+.++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~--lm~~~~~~-------------g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRL--LMRALAAQ-------------GRRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHH--HHHHHHHT-------------T-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH--HHHHHHHC-------------cCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 35667777788999999988 55888662 2367888999999999999999988 5566665554
No 134
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=41.27 E-value=19 Score=25.33 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=15.9
Q ss_pred ceeEEecCccccCCchhhHHH
Q 032222 3 DLYALDFDGVLCDSCGESSLS 23 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E~~~s 23 (145)
.-++|+=||+.++ .|||++
T Consensus 41 ~~l~L~eDGTeVt--EeyF~t 59 (77)
T cd06535 41 SRLCLYEDGTEVT--EEYFPT 59 (77)
T ss_pred cEEEEecCCcEeh--HHHHhc
Confidence 3578999999995 899975
No 135
>PF05154 TM2: TM2 domain; InterPro: IPR007829 This domain is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.
Probab=40.77 E-value=9.6 Score=24.10 Aligned_cols=13 Identities=23% Similarity=0.851 Sum_probs=10.9
Q ss_pred HHHHHhcCCCCCC
Q 032222 131 LTTWIGANRYFKQ 143 (145)
Q Consensus 131 ~~~WL~lhr~YpG 143 (145)
+-+|.++||||-|
T Consensus 14 ~lG~~G~hrfYlg 26 (51)
T PF05154_consen 14 FLGWFGLHRFYLG 26 (51)
T ss_pred HHhhccccceecC
Confidence 4579999999976
No 136
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=39.62 E-value=16 Score=22.95 Aligned_cols=15 Identities=33% Similarity=0.756 Sum_probs=12.6
Q ss_pred HHCHHHHHhcCCCCC
Q 032222 128 DKDLTTWIGANRYFK 142 (145)
Q Consensus 128 ~~D~~~WL~lhr~Yp 142 (145)
++++..||..|.-|.
T Consensus 25 ~~~l~~WL~~~p~ye 39 (45)
T smart00592 25 AKDLERWLEENPEYE 39 (45)
T ss_pred HHHHHHHHhcCCCcc
Confidence 568889999998884
No 137
>CHL00105 psaJ photosystem I subunit IX
Probab=39.54 E-value=12 Score=23.56 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=14.5
Q ss_pred HHHHCHHHHHhcCCCCCCC
Q 032222 126 WMDKDLTTWIGANRYFKQA 144 (145)
Q Consensus 126 wi~~D~~~WL~lhr~YpGV 144 (145)
|+.--..-++..|||||+.
T Consensus 18 w~~~tag~lIEiNRffPD~ 36 (42)
T CHL00105 18 WFGFLAGLLIEINRFFPDA 36 (42)
T ss_pred HHHHHHHHHHHHHHhCChh
Confidence 5555566789999999973
No 138
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=39.36 E-value=12 Score=23.62 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=14.5
Q ss_pred HHHHCHHHHHhcCCCCCCC
Q 032222 126 WMDKDLTTWIGANRYFKQA 144 (145)
Q Consensus 126 wi~~D~~~WL~lhr~YpGV 144 (145)
|+.--..-++..|||||+.
T Consensus 18 w~~~tag~lIEiNRffPD~ 36 (42)
T PRK02733 18 WLTLTAGILIEFNRFFPDL 36 (42)
T ss_pred HHHHHHHHHHHHHHhCchH
Confidence 5555566789999999973
No 139
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=38.41 E-value=19 Score=27.26 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=11.3
Q ss_pred ceeEEecCccccC
Q 032222 3 DLYALDFDGVLCD 15 (145)
Q Consensus 3 ~llalDFDGVIcD 15 (145)
+++.||.||||..
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 5788999999995
No 140
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=38.25 E-value=30 Score=23.11 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=15.8
Q ss_pred CceeEEecCccccCCchhhHHHH
Q 032222 2 ADLYALDFDGVLCDSCGESSLSA 24 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~E~~~sa 24 (145)
+.-..+||+|| +++.-.|+-.
T Consensus 17 ~~~V~lDF~gv--~~~~ssFl~e 37 (74)
T PF14213_consen 17 GEKVVLDFEGV--ESITSSFLNE 37 (74)
T ss_pred CCeEEEECCCc--ccccHHHHHH
Confidence 34578999999 8887777654
No 141
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=37.79 E-value=20 Score=31.41 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCceeEEecCccccCCch
Q 032222 1 MADLYALDFDGVLCDSCG 18 (145)
Q Consensus 1 ~~~llalDFDGVIcDg~~ 18 (145)
|-+++.||+||||..-..
T Consensus 1 ~~k~l~lDrDgtl~~~~~ 18 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPP 18 (354)
T ss_pred CCcEEEEeCCCCccCCCC
Confidence 568999999999998654
No 142
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=36.21 E-value=31 Score=33.19 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=18.8
Q ss_pred ceeEEecCccccCCch---hhHHHHHHHHHh
Q 032222 3 DLYALDFDGVLCDSCG---ESSLSAVKAAKV 30 (145)
Q Consensus 3 ~llalDFDGVIcDg~~---E~~~sa~~a~~~ 30 (145)
+++++|+||++.|.=. +...-+.+.+++
T Consensus 417 KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~e 447 (694)
T PRK14502 417 KIVYTDLDGTLLNPLTYSYSTALDALRLLKD 447 (694)
T ss_pred eEEEEECcCCCcCCCCccCHHHHHHHHHHHH
Confidence 5899999999999633 333444444444
No 143
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=35.75 E-value=53 Score=26.24 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=29.2
Q ss_pred CHHHHHHhhhhhhHHHHHhcCCCHHHHHHHHH
Q 032222 89 TVEGILENWSKIKPVIMEDWSENRDALVDLFG 120 (145)
Q Consensus 89 ~~~~il~~w~~~~~~~l~~~~~~~~~L~~~~~ 120 (145)
....+.+||..+...+=++.||+.++|.+.+.
T Consensus 72 ~~~elvedY~e~Ir~ARE~~G~SqedLA~ki~ 103 (165)
T COG1813 72 ELPELVEDYGERIREAREKRGLSQEDLAAKLK 103 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 47889999999999999999999999998775
No 144
>PF13265 DUF4056: Protein of unknown function (DUF4056)
Probab=35.68 E-value=1.4e+02 Score=25.64 Aligned_cols=55 Identities=15% Similarity=0.320 Sum_probs=44.7
Q ss_pred CCCHHHHHHhhhhhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHCH---HHHHhcCCCC
Q 032222 87 GLTVEGILENWSKIKPVIMEDWSE-NRDALVDLFGKVRDEWMDKDL---TTWIGANRYF 141 (145)
Q Consensus 87 g~~~~~il~~w~~~~~~~l~~~~~-~~~~L~~~~~~vRd~wi~~D~---~~WL~lhr~Y 141 (145)
..+.+.+-+.-....++.|.+-|- ++++=+..|+++=..|=.+.. +.|+=++|=|
T Consensus 199 ~~s~~~f~~am~~~l~~aL~~Lga~~~~~T~~~f~~lDG~WWdS~rrvP~K~lvLkR~Y 257 (270)
T PF13265_consen 199 ALSVEQFNQAMTQALPQALHQLGAVSKSETRAQFDQLDGIWWDSQRRVPDKFLVLKRDY 257 (270)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcCccccCCCCCCCceEEEeecc
Confidence 678999999999988999998887 778889999999888876653 5677776655
No 145
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=34.91 E-value=22 Score=32.93 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=12.3
Q ss_pred CceeEEecCccccC
Q 032222 2 ADLYALDFDGVLCD 15 (145)
Q Consensus 2 ~~llalDFDGVIcD 15 (145)
.++.+||.||||+.
T Consensus 168 ~Kia~fD~DGTLi~ 181 (526)
T TIGR01663 168 EKIAGFDLDGTIIK 181 (526)
T ss_pred CcEEEEECCCCccc
Confidence 46899999999995
No 146
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=34.00 E-value=15 Score=25.52 Aligned_cols=9 Identities=56% Similarity=0.914 Sum_probs=8.1
Q ss_pred EEecCcccc
Q 032222 6 ALDFDGVLC 14 (145)
Q Consensus 6 alDFDGVIc 14 (145)
=|||+|+++
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 389999999
No 147
>PF05666 Fels1: Fels-1 Prophage Protein-like; InterPro: IPR008617 The function of these proteins is unknown.
Probab=33.93 E-value=15 Score=23.37 Aligned_cols=8 Identities=50% Similarity=1.153 Sum_probs=6.3
Q ss_pred CccccCCc
Q 032222 10 DGVLCDSC 17 (145)
Q Consensus 10 DGVIcDg~ 17 (145)
.||+||--
T Consensus 16 ~GV~CD~~ 23 (45)
T PF05666_consen 16 NGVFCDKK 23 (45)
T ss_pred CCceEccc
Confidence 49999964
No 148
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.92 E-value=29 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.6
Q ss_pred eeEEecCccccCCchhhHHH
Q 032222 4 LYALDFDGVLCDSCGESSLS 23 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~s 23 (145)
-++|+=||+++|.- |||++
T Consensus 42 ~lvL~eDGT~Vd~E-eyF~~ 60 (78)
T cd06539 42 TLVLEEDGTVVDTE-EFFQT 60 (78)
T ss_pred EEEEeCCCCEEccH-HHHhh
Confidence 47899999999874 78865
No 149
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.53 E-value=29 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=15.6
Q ss_pred eeEEecCccccCCchhhHHH
Q 032222 4 LYALDFDGVLCDSCGESSLS 23 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~s 23 (145)
-++|+=||+++|.- |||++
T Consensus 41 ~lvLeeDGT~Vd~E-eyF~t 59 (81)
T cd06537 41 TLVLEEDGTAVDSE-DFFEL 59 (81)
T ss_pred EEEEecCCCEEccH-HHHhh
Confidence 47899999999874 78865
No 150
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=31.97 E-value=28 Score=25.85 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.8
Q ss_pred ceeEEecCccccCCch
Q 032222 3 DLYALDFDGVLCDSCG 18 (145)
Q Consensus 3 ~llalDFDGVIcDg~~ 18 (145)
.+++||.||++|++-.
T Consensus 3 ~~lvldld~tl~~~~~ 18 (148)
T smart00577 3 KTLVLDLDETLVHSTH 18 (148)
T ss_pred cEEEEeCCCCeECCCC
Confidence 4799999999999853
No 151
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=31.81 E-value=42 Score=31.10 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.2
Q ss_pred ceeEEecCcccc---CCchhhHHHHHHH
Q 032222 3 DLYALDFDGVLC---DSCGESSLSAVKA 27 (145)
Q Consensus 3 ~llalDFDGVIc---Dg~~E~~~sa~~a 27 (145)
+-.++||||+|. |++..+...|..|
T Consensus 9 ~~~~fD~DGTLlrs~ssFpyFmlva~ea 36 (498)
T PLN02499 9 YSVVSELEGTLLKDADPFSYFMLVAFEA 36 (498)
T ss_pred ceEEEecccceecCCCccHHHHHHHHHh
Confidence 458999999996 5788888877665
No 152
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=30.93 E-value=23 Score=31.59 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.6
Q ss_pred eEEecCccccCCc
Q 032222 5 YALDFDGVLCDSC 17 (145)
Q Consensus 5 lalDFDGVIcDg~ 17 (145)
+|||.||||.-|=
T Consensus 38 fafDIDGVL~RG~ 50 (389)
T KOG1618|consen 38 FAFDIDGVLFRGH 50 (389)
T ss_pred EEEecccEEEecC
Confidence 7999999999874
No 153
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=30.51 E-value=1.1e+02 Score=18.48 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=21.5
Q ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHH
Q 032222 100 IKPVIMEDWSENRDALVDLFGKVRDE 125 (145)
Q Consensus 100 ~~~~~l~~~~~~~~~L~~~~~~vRd~ 125 (145)
.+..++++-|++..++..=|-..|..
T Consensus 15 ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 15 EKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 67788999999999999999888863
No 154
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=30.44 E-value=38 Score=23.90 Aligned_cols=50 Identities=30% Similarity=0.364 Sum_probs=31.5
Q ss_pred eeEEecCccccCCchhhHHHHHHHHHhhCCC----CCCCCCcchHHHHHHhccc-ccCce
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAKVRWPG----LFDGVDSVIEDWIVDQMHI-LRPVV 58 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~~~wp~----~~~~~~~~~~~~i~~~Fr~-lRPvV 58 (145)
++++|||| +-..+.+...-+++...-|+ .+-.++. .+.+.+.+++ .+|+-
T Consensus 52 li~vd~~~---~~~~~~~~~i~~~~~~~~~~~~~vd~~~~~~--~~~~~~~~~~~~~PFY 106 (108)
T PF14581_consen 52 LIGVDFDG---EDIEEIFQEIGRAARPYLPDGWPVDFVLLDD--EDPLAKWIIEHVRPFY 106 (108)
T ss_pred EEEEeccC---hhHHHHHHHHHHHhhhcCCCCceEEEEEccC--CCcHHHHHHhcCCCCc
Confidence 78999999 77888887777777776433 1222221 2346666555 77763
No 155
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=28.85 E-value=31 Score=27.76 Aligned_cols=15 Identities=40% Similarity=0.456 Sum_probs=13.3
Q ss_pred ceeEEecCccccCCc
Q 032222 3 DLYALDFDGVLCDSC 17 (145)
Q Consensus 3 ~llalDFDGVIcDg~ 17 (145)
++++||.||+++|..
T Consensus 22 klLVLDLDeTLvh~~ 36 (195)
T TIGR02245 22 KLLVLDIDYTLFDHR 36 (195)
T ss_pred cEEEEeCCCceEccc
Confidence 589999999999963
No 156
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.73 E-value=17 Score=27.54 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHHHHhcccccCceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhHH
Q 032222 45 DWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPV 103 (145)
Q Consensus 45 ~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~~ 103 (145)
-.+.+.||..++-+ .||.++++++.-+. +.+.+++.++...+...
T Consensus 68 R~lRE~fR~~~~~l-~g~DiVviaR~~~~-------------~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 68 RLIRESFRLNQHSL-AGWDIVVVARKGLG-------------ELENPELHQQFGKLWKR 112 (130)
T ss_pred HHHHHHHHHhhccC-CCeeEEEEeCCCcc-------------cCCHHHHHHHHHHHHHH
Confidence 57899999999998 69999998875533 66777777777665444
No 157
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=27.55 E-value=37 Score=27.08 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=13.9
Q ss_pred ceeEEecCccccCCchh
Q 032222 3 DLYALDFDGVLCDSCGE 19 (145)
Q Consensus 3 ~llalDFDGVIcDg~~E 19 (145)
+.++||-|||+.++..-
T Consensus 9 ~~~~~D~dG~l~~~~~~ 25 (242)
T TIGR01459 9 DVFLLDLWGVIIDGNHT 25 (242)
T ss_pred CEEEEecccccccCCcc
Confidence 46899999999988643
No 158
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=26.45 E-value=34 Score=28.94 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.1
Q ss_pred ceeEEecCccccCCc
Q 032222 3 DLYALDFDGVLCDSC 17 (145)
Q Consensus 3 ~llalDFDGVIcDg~ 17 (145)
..|.||-||||.+|-
T Consensus 9 ~~~l~DlDGvl~~G~ 23 (269)
T COG0647 9 DGFLFDLDGVLYRGN 23 (269)
T ss_pred CEEEEcCcCceEeCC
Confidence 468999999999885
No 159
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=26.16 E-value=42 Score=23.44 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.2
Q ss_pred eeEEecCccccCCchhhHHH
Q 032222 4 LYALDFDGVLCDSCGESSLS 23 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~s 23 (145)
-++|+=||+++|.- |||++
T Consensus 40 ~l~L~eDGT~VddE-eyF~t 58 (74)
T smart00266 40 TLVLEEDGTIVDDE-EYFQT 58 (74)
T ss_pred EEEEecCCcEEccH-HHHhc
Confidence 47899999999874 78764
No 160
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=25.90 E-value=43 Score=23.69 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.1
Q ss_pred eeEEecCccccCCchhhHHH
Q 032222 4 LYALDFDGVLCDSCGESSLS 23 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~s 23 (145)
-++|+=||+++|.- |||++
T Consensus 44 ~lvL~eDGT~VddE-eyF~t 62 (80)
T cd06536 44 TLVLAEDGTIVEDE-DYFLC 62 (80)
T ss_pred EEEEecCCcEEccH-HHHhh
Confidence 46799999999874 78765
No 161
>PF02438 Adeno_100: Late 100kD protein; InterPro: IPR003381 The late 100 kDa protein is a non-structural viral protein involved in the transport of hexon from the cytoplasm to the nucleus.; GO: 0019060 intracellular transport of viral proteins in host cell
Probab=25.20 E-value=76 Score=30.02 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=45.5
Q ss_pred ccCCchhhHHHHHHHHHhhCCCCCCCCCcchHHHHHHhcccccCceeecccHHHHHHHHHh
Q 032222 13 LCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLE 73 (145)
Q Consensus 13 IcDg~~E~~~sa~~a~~~~wp~~~~~~~~~~~~~i~~~Fr~lRPvVetGwEm~lL~r~L~e 73 (145)
|.|++==+.+-+|++|-.+|++ .+++.+...+.+.+.+-|+-+=+|.---.++..|..
T Consensus 307 v~DtIyLfLv~TWQTaMgvWQQ---~Lee~nl~~l~k~l~~~~~~l~~~~~~~~ia~~la~ 364 (583)
T PF02438_consen 307 VRDTIYLFLVLTWQTAMGVWQQ---CLEEENLKELEKLLQRNKRALWTGFSEREIAKELAD 364 (583)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH---HhhHhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Confidence 4455534456789999999987 556677889999999999999999877777777755
No 162
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=24.80 E-value=94 Score=23.54 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=30.5
Q ss_pred cccccCCCCHHHHHHhhhhhhHHHHHhcCCCHHHHHH
Q 032222 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVD 117 (145)
Q Consensus 81 ~~~~~~g~~~~~il~~w~~~~~~~l~~~~~~~~~L~~ 117 (145)
+-+..+.-+.++|++.=..+...++++.++++++++.
T Consensus 6 GAtTv~~nt~e~I~~at~eLl~~i~~~N~l~~edivS 42 (117)
T cd02185 6 GATTVEENTAEEILEATRELLEEIIERNNIKPEDIIS 42 (117)
T ss_pred CceecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 3344456789999999999999999999999988654
No 163
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=24.17 E-value=45 Score=29.01 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.5
Q ss_pred CceeEEecCccccCCch
Q 032222 2 ADLYALDFDGVLCDSCG 18 (145)
Q Consensus 2 ~~llalDFDGVIcDg~~ 18 (145)
-+++|||.||++.+.-.
T Consensus 126 ~kvIvFDLDgTLi~~~~ 142 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEE 142 (301)
T ss_pred ceEEEEecCCCCcCCCC
Confidence 36899999999998864
No 164
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=24.14 E-value=13 Score=27.44 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=32.4
Q ss_pred HHHHHhcccccCceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhh
Q 032222 45 DWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKI 100 (145)
Q Consensus 45 ~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~ 100 (145)
-.+.+.||...|-+..||.++++++.=+. ..+.+++.++..++
T Consensus 69 R~lRe~~R~~~~~l~~g~diVvi~r~~~~-------------~~~~~~l~~~l~~l 111 (122)
T PRK03031 69 RQIRAALRQLLPRIAPGWDLVIIVKPTAA-------------ECNYEQFLQELEQL 111 (122)
T ss_pred HHHHHHHHHhhhccCCCceEEEEECCCcc-------------cCCHHHHHHHHHHH
Confidence 57889999999999999999997764432 56667776665553
No 165
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.78 E-value=50 Score=23.33 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.4
Q ss_pred eeEEecCccccCCchhhHHH
Q 032222 4 LYALDFDGVLCDSCGESSLS 23 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~s 23 (145)
-++|+=||+++|. .|||++
T Consensus 41 ~lvL~eDGT~Vd~-EeyF~t 59 (79)
T cd06538 41 SLVLDEDGTGVDT-EEFFQA 59 (79)
T ss_pred EEEEecCCcEEcc-HHHHhh
Confidence 3789999999986 478875
No 166
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=23.76 E-value=44 Score=25.17 Aligned_cols=39 Identities=31% Similarity=0.504 Sum_probs=25.6
Q ss_pred HHHHHhccccc----Cce--------eecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhh
Q 032222 45 DWIVDQMHILR----PVV--------ETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWS 98 (145)
Q Consensus 45 ~~i~~~Fr~lR----PvV--------etGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~ 98 (145)
+.+.+-|..+. |++ +||+=..||+.+| |++.++|.+||.
T Consensus 111 ~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~l---------------GV~~~~I~~DY~ 161 (164)
T PF13350_consen 111 EAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLL---------------GVPDEDIIADYL 161 (164)
T ss_dssp HHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHT---------------T--HHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHc---------------CCCHHHHHHHHH
Confidence 34555555444 776 5788777777666 999999999995
No 167
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=23.76 E-value=1e+02 Score=20.44 Aligned_cols=30 Identities=7% Similarity=0.207 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHhcCCCHHHHHHHHHHHHHH
Q 032222 96 NWSKIKPVIMEDWSENRDALVDLFGKVRDE 125 (145)
Q Consensus 96 ~w~~~~~~~l~~~~~~~~~L~~~~~~vRd~ 125 (145)
+..+.|-+.|.+|...+..|.+....++++
T Consensus 20 ~~AS~~GrgL~~Wk~~Kp~l~~ki~~l~~~ 49 (57)
T PF10549_consen 20 DIASLCGRGLNRWKWKKPQLEQKIEELEEQ 49 (57)
T ss_pred HHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345678889999999999999999999886
No 168
>PF08947 BPS: BPS (Between PH and SH2) ; InterPro: IPR015042 The BPS (Between PH and SH2) domain, comprised of 2 beta strands and a C-terminal helix, is an approximately 45 residue region found in the adaptor proteins Grb7/10/14 that mediates inhibition of the tyrosine kinase domain of the insulin receptor by binding of the N-terminal portion of the BPS domain to the substrate peptide groove of the kinase, acting as a pseudosubstrate inhibitor []. ; PDB: 2AUH_B.
Probab=23.44 E-value=45 Score=21.64 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=6.6
Q ss_pred CceeEEecCccc
Q 032222 2 ADLYALDFDGVL 13 (145)
Q Consensus 2 ~~llalDFDGVI 13 (145)
+++.|+||-|-.
T Consensus 6 ~slVaMDFsG~~ 17 (49)
T PF08947_consen 6 NSLVAMDFSGQT 17 (49)
T ss_dssp ---EEEE-SSSS
T ss_pred cceEEeeecCCc
Confidence 568999999854
No 169
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=23.22 E-value=1.1e+02 Score=23.26 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=30.0
Q ss_pred ccccCCCCHHHHHHhhhhhhHHHHHhcCCCHHHHHH
Q 032222 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVD 117 (145)
Q Consensus 82 ~~~~~g~~~~~il~~w~~~~~~~l~~~~~~~~~L~~ 117 (145)
-+..+.-+.++|++.=..+...++++.++++++++.
T Consensus 7 AtTv~~nt~e~I~~at~eLl~~ii~~N~l~~edivS 42 (117)
T TIGR01796 7 ATTVERNEAEEIGEAVAELLTELMERNELTPEDLIS 42 (117)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 344456789999999999999999999999988654
No 170
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=23.17 E-value=51 Score=23.17 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=15.5
Q ss_pred eeEEecCccccCCchhhHHH
Q 032222 4 LYALDFDGVLCDSCGESSLS 23 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~s 23 (145)
-++|+=||+++|. .|||++
T Consensus 42 ~lvL~eDGTeVdd-EeYF~t 60 (78)
T cd01615 42 TLVLEEDGTEVDD-EEYFQT 60 (78)
T ss_pred EEEEeCCCcEEcc-HHHHhc
Confidence 4889999999986 478865
No 171
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=22.97 E-value=21 Score=27.54 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHhcccccCceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhHHHHHhcCCCH
Q 032222 45 DWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENR 112 (145)
Q Consensus 45 ~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~~~l~~~~~~~ 112 (145)
-.+.+.||..+|.+. ||.++++++.-+ ..+.+++.+++....++.+..-|-+.
T Consensus 67 R~lREafR~~~~~l~-g~DiVviaR~~~--------------~~~f~~L~~~l~~~~~~~~~~~~~~~ 119 (138)
T PRK00730 67 RIVREAFRHVRHNLP-GCQIVVSPKGNS--------------QPDFLKLLQDFLQQIPEALPKLGKNK 119 (138)
T ss_pred HHHHHHHHHhhcccC-CceEEEEecccc--------------CCCHHHHHHHHHHHHHHHhhhhccCC
Confidence 578999999999985 999998766432 26688888888888777777666543
No 172
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=22.85 E-value=4.4e+02 Score=21.77 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=61.2
Q ss_pred EEecCc-cccCCch-hhHHHHH-HHHHhhCCCCCCCCCcchHHHHHHhcccccCceeecccHHHHHHHHHhhcccccccc
Q 032222 6 ALDFDG-VLCDSCG-ESSLSAV-KAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKS 82 (145)
Q Consensus 6 alDFDG-VIcDg~~-E~~~sa~-~a~~~~wp~~~~~~~~~~~~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~ 82 (145)
-|||++ +-+.=+. +-+.|.+ .|...+-|. -+..+.+.+|..||-|+. +=|.+....
T Consensus 7 ~Fdf~~~~p~~W~~~~p~~T~~~nalS~~fP~--------GE~ffi~svr~~~~~i~D----~~L~~~i~~--------- 65 (253)
T PF10118_consen 7 DFDFSDDVPRHWIPGDPFATHFFNALSLLFPE--------GERFFIRSVRRARPQIKD----PELREEIKG--------- 65 (253)
T ss_pred CCCCCCCCCcccCCCChHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHhhCCC----HHHHHHHHH---------
Confidence 467777 4332222 2334554 333333333 247999999999999932 334444422
Q ss_pred cccCCCCHHHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 032222 83 SVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDK 129 (145)
Q Consensus 83 ~~~~g~~~~~il~~w~~~~~~~l~~~~~~~~~L~~~~~~vRd~wi~~ 129 (145)
-+..|+.-..=|..--..|++.|.+.+.+.+...+...+.+++
T Consensus 66 ----FIgQEA~H~r~H~~~n~~l~~~G~~~~~~~~~~~~~~~~~l~~ 108 (253)
T PF10118_consen 66 ----FIGQEAMHSREHRKFNEALEAQGYDVRPFLEKMEKLFLKFLEK 108 (253)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhh
Confidence 3446777776677666777888888888777777777666655
No 173
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.74 E-value=1.7e+02 Score=25.68 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=39.8
Q ss_pred HhhCCCCCCCCCcchHHHHHHhcccccCceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhHHHHHhc
Q 032222 29 KVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDW 108 (145)
Q Consensus 29 ~~~wp~~~~~~~~~~~~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~~~l~~~ 108 (145)
..--|+.|. -+-+.++.-+.++||= -+|+--|-+-.-.+.-.|.. .-+..||-=-
T Consensus 169 ~~~~pdV~n----HNvETVprL~~~VRp~--A~Y~~SL~~L~~~k~~~P~i-------------------~TKSgiMlGL 223 (306)
T COG0320 169 ADAGPDVFN----HNVETVPRLYPRVRPG--ATYERSLSLLERAKELGPDI-------------------PTKSGLMVGL 223 (306)
T ss_pred HhcCcchhh----cccccchhcccccCCC--CcHHHHHHHHHHHHHhCCCc-------------------ccccceeeec
Confidence 333566654 2234577778888864 45555442222223233321 1234455556
Q ss_pred CCCHHHHHHHHHHHHHH
Q 032222 109 SENRDALVDLFGKVRDE 125 (145)
Q Consensus 109 ~~~~~~L~~~~~~vRd~ 125 (145)
|++.+|+.+.++..|+.
T Consensus 224 GEt~~Ev~e~m~DLr~~ 240 (306)
T COG0320 224 GETDEEVIEVMDDLRSA 240 (306)
T ss_pred CCcHHHHHHHHHHHHHc
Confidence 77888888888888763
No 174
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=20.96 E-value=1.1e+02 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=20.8
Q ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHCHH
Q 032222 100 IKPVIMEDWSENRDALVDLFGKVRDEWMDKDLT 132 (145)
Q Consensus 100 ~~~~~l~~~~~~~~~L~~~~~~vRd~wi~~D~~ 132 (145)
+.+.++.+.|.... .+++-+++-+||+.|.+
T Consensus 49 ~v~~v~~e~g~~~s--~E~lva~~~~wiaed~K 79 (229)
T COG4229 49 IVDEVLSEFGIANS--EEALVALLLEWIAEDSK 79 (229)
T ss_pred HHHHHHHHhCccch--HHHHHHHHHHHHhcccc
Confidence 44555666665443 56777788899998864
No 175
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=20.86 E-value=1.7e+02 Score=19.70 Aligned_cols=36 Identities=6% Similarity=0.058 Sum_probs=30.2
Q ss_pred CHHHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHH
Q 032222 89 TVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRD 124 (145)
Q Consensus 89 ~~~~il~~w~~~~~~~l~~~~~~~~~L~~~~~~vRd 124 (145)
....+-.++......+++..|++++++.+..-.++.
T Consensus 35 ~~~~l~~~a~~~~~~~I~~~GLtv~~fN~I~~~~q~ 70 (78)
T PF13767_consen 35 EIQELQEEAQEEMVEAIEENGLTVERFNEITQAAQS 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 367888888888888889999999999988877764
No 176
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=20.81 E-value=1.3e+02 Score=20.58 Aligned_cols=30 Identities=7% Similarity=0.188 Sum_probs=24.4
Q ss_pred HHHHHHhhhhhhHHHHHhcCCCHHHHHHHH
Q 032222 90 VEGILENWSKIKPVIMEDWSENRDALVDLF 119 (145)
Q Consensus 90 ~~~il~~w~~~~~~~l~~~~~~~~~L~~~~ 119 (145)
..+..+.|-+.-...|+++|++.+|-+...
T Consensus 15 ~~~~re~f~~dp~a~~~~~~Lt~eE~~al~ 44 (77)
T cd07321 15 KPEVKERFKADPEAVLAEYGLTPEEKAALL 44 (77)
T ss_pred CHHHHHHHHhCHHHHHHHcCCCHHHHHHHH
Confidence 456778888888999999999999876554
No 177
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=20.71 E-value=19 Score=26.76 Aligned_cols=45 Identities=2% Similarity=-0.225 Sum_probs=33.9
Q ss_pred HHHHHhcccccCceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhH
Q 032222 45 DWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKP 102 (145)
Q Consensus 45 ~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~ 102 (145)
-.|.+.||...+-+..|+.++++++.-+. ..+..++.++...+..
T Consensus 69 R~lRe~~R~~~~~l~~g~D~Viiar~~~~-------------~~~~~~l~~~l~~ll~ 113 (122)
T PRK03459 69 RRLRHICADIVDQVPETHHVVIRALPGAA-------------TASSAELERDVRAGLG 113 (122)
T ss_pred HHHHHHHHHhhhccCCCcEEEEEECcccc-------------cCCHHHHHHHHHHHHH
Confidence 46889999999999899999997775433 5567777666655433
No 178
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=20.48 E-value=91 Score=18.01 Aligned_cols=19 Identities=0% Similarity=0.144 Sum_probs=14.9
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 032222 103 VIMEDWSENRDALVDLFGK 121 (145)
Q Consensus 103 ~~l~~~~~~~~~L~~~~~~ 121 (145)
...++.|++.++..+.|.+
T Consensus 9 rYV~eh~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLAA 27 (28)
T ss_pred hhHHhcCCCHHHHHHHHHc
Confidence 3567888999999888764
No 179
>PRK14865 rnpA ribonuclease P; Provisional
Probab=20.38 E-value=27 Score=25.54 Aligned_cols=47 Identities=6% Similarity=0.029 Sum_probs=32.9
Q ss_pred HHHHHhcccccCceeecccHHHHHHHHHhhcccccccccccCCCCHHHHHHhhhhhhHHHH
Q 032222 45 DWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIM 105 (145)
Q Consensus 45 ~~i~~~Fr~lRPvVetGwEm~lL~r~L~e~~~p~~~~~~~~~g~~~~~il~~w~~~~~~~l 105 (145)
-.+.+.||..+|.+. |+..+++++.-. ...+.+++.++..++...+.
T Consensus 66 R~lRE~~R~~~~~l~-~~divii~r~~~-------------~~~~~~~l~~~l~~ll~~~~ 112 (116)
T PRK14865 66 RLVREFYRLNKSLFI-VADYNIIAKKGA-------------EQLDFQQISRELANALERLR 112 (116)
T ss_pred HHHHHHHHHhhccCC-CCCEEEEEeCCc-------------ccCCHHHHHHHHHHHHHHHH
Confidence 568899999999874 888887655332 26677777777766655443
No 180
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=20.17 E-value=87 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=17.7
Q ss_pred eeEEecCccccCCchhhHHHHHHHHH
Q 032222 4 LYALDFDGVLCDSCGESSLSAVKAAK 29 (145)
Q Consensus 4 llalDFDGVIcDg~~E~~~sa~~a~~ 29 (145)
...||.||+++|+-.=|..+...-++
T Consensus 12 ~~lfD~dG~lvdte~~y~~~~~~~~~ 37 (222)
T KOG2914|consen 12 ACLFDMDGTLVDTEDLYTEAWQELLD 37 (222)
T ss_pred eEEEecCCcEEecHHHHHHHHHHHHH
Confidence 45799999999997655544433333
Done!