Query 032224
Match_columns 145
No_of_seqs 304 out of 1396
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 18:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_f 40S ribosomal protein S 100.0 5.4E-61 1.9E-65 345.9 3.7 144 1-144 1-144 (152)
2 2xzm_9 RPS31E; ribosome, trans 100.0 1.1E-52 3.9E-57 310.6 4.5 137 1-144 1-137 (189)
3 4fbj_B NEDD8; effector-HOST ta 99.9 1.7E-23 5.9E-28 137.2 9.5 79 1-79 1-79 (88)
4 3phx_B Ubiquitin-like protein 99.9 4.7E-23 1.6E-27 132.1 10.1 75 1-75 5-79 (79)
5 1ndd_A NEDD8, protein (ubiquit 99.9 1.4E-22 4.9E-27 128.2 10.1 76 1-76 1-76 (76)
6 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 1.4E-22 4.8E-27 134.3 10.4 80 1-80 2-81 (96)
7 3n3k_B Ubiquitin; hydrolase, p 99.9 1.3E-22 4.5E-27 131.2 9.0 78 1-78 4-81 (85)
8 3a9j_A Ubiquitin; protein comp 99.9 3.1E-22 1.1E-26 126.6 10.5 76 1-76 1-76 (76)
9 1se9_A Ubiquitin family; ubiqu 99.9 1.1E-22 3.9E-27 141.3 9.0 90 1-92 17-120 (126)
10 1sif_A Ubiquitin; hydrophobic 99.9 2.2E-22 7.5E-27 131.9 9.9 77 1-77 10-86 (88)
11 3dbh_I NEDD8; cell cycle, acti 99.9 1.5E-22 5.2E-27 131.9 8.6 76 1-76 13-88 (88)
12 4hcn_B Polyubiquitin, ubiquiti 99.9 2.8E-22 9.5E-27 133.9 9.5 76 1-76 23-98 (98)
13 3mtn_B UBA80, ubcep1, ubiquiti 99.9 3.2E-22 1.1E-26 129.3 9.4 77 1-77 4-80 (85)
14 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 4.6E-22 1.6E-26 129.5 8.8 77 1-77 8-84 (87)
15 2uyz_B Small ubiquitin-related 99.9 3.9E-22 1.3E-26 127.8 8.1 76 1-76 4-79 (79)
16 2hj8_A Interferon-induced 17 k 99.9 3.7E-22 1.3E-26 130.8 8.0 77 1-77 5-81 (88)
17 3plu_A Ubiquitin-like modifier 99.9 9.9E-22 3.4E-26 129.6 9.8 70 1-70 22-91 (93)
18 2kan_A Uncharacterized protein 99.9 8.3E-22 2.8E-26 130.8 8.7 77 1-78 16-93 (94)
19 1wy8_A NP95-like ring finger p 99.9 1.7E-21 5.9E-26 127.4 9.5 77 1-77 8-86 (89)
20 2kk8_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 127.3 8.7 73 1-73 11-84 (84)
21 3vdz_A Ubiquitin-40S ribosomal 99.9 2.4E-21 8.3E-26 132.2 9.9 76 1-76 36-111 (111)
22 1yx5_B Ubiquitin; proteasome, 99.9 3.5E-21 1.2E-25 128.3 10.4 79 1-79 1-79 (98)
23 3v6c_B Ubiquitin; structural g 99.9 2.1E-21 7.1E-26 127.8 9.1 74 1-74 18-91 (91)
24 1wyw_B Ubiquitin-like protein 99.9 1.4E-21 4.9E-26 130.3 8.3 76 1-76 22-97 (97)
25 4dwf_A HLA-B-associated transc 99.9 3.4E-21 1.2E-25 126.3 9.6 77 1-78 6-82 (90)
26 2l7r_A Ubiquitin-like protein 99.9 2.1E-21 7.3E-26 128.5 8.3 74 1-76 20-93 (93)
27 3l0w_B Monoubiquitinated proli 99.8 5.7E-21 1.9E-25 139.3 10.7 78 1-78 1-78 (169)
28 2faz_A Ubiquitin-like containi 99.8 7.9E-21 2.7E-25 121.2 9.4 73 1-73 3-77 (78)
29 3rt3_B Ubiquitin-like protein 99.8 9.5E-21 3.3E-25 136.0 9.9 77 1-77 82-158 (159)
30 1wgd_A Homocysteine-responsive 99.8 4.9E-21 1.7E-25 126.5 7.7 77 1-77 8-90 (93)
31 4eew_A Large proline-rich prot 99.8 1.6E-20 5.3E-25 122.6 9.5 71 1-72 18-88 (88)
32 1uel_A HHR23B, UV excision rep 99.8 2.5E-20 8.4E-25 123.7 10.5 77 1-77 1-80 (95)
33 1uh6_A Ubiquitin-like 5; beta- 99.8 6.9E-21 2.4E-25 127.5 7.8 71 1-71 29-99 (100)
34 2lxa_A Ubiquitin-like protein 99.8 4.5E-21 1.5E-25 125.7 6.7 73 1-73 2-78 (87)
35 3b1l_X E3 ubiquitin-protein li 99.7 1.8E-22 6.3E-27 128.2 0.0 75 1-75 1-75 (76)
36 2ojr_A Ubiquitin; lanthide-bin 99.8 1.9E-20 6.5E-25 127.7 10.0 76 1-76 36-111 (111)
37 2dzi_A Ubiquitin-like protein 99.8 1.7E-20 5.7E-25 120.2 8.3 73 1-73 8-80 (81)
38 2kdi_A Ubiquitin, vacuolar pro 99.8 3.5E-20 1.2E-24 127.0 10.4 78 1-78 10-87 (114)
39 1we6_A Splicing factor, putati 99.8 8.7E-21 3E-25 129.3 7.2 78 1-78 28-109 (111)
40 3q3f_A Ribonuclease/ubiquitin 99.8 1.6E-20 5.6E-25 139.0 9.2 79 1-79 106-184 (189)
41 2wyq_A HHR23A, UV excision rep 99.8 5.3E-20 1.8E-24 119.1 10.1 72 1-72 6-80 (85)
42 3u5e_m 60S ribosomal protein L 99.8 5.2E-22 1.8E-26 138.7 0.1 78 1-78 1-78 (128)
43 3m62_B UV excision repair prot 99.8 1.9E-20 6.6E-25 126.7 7.5 73 1-73 2-74 (106)
44 2gow_A HCG-1 protein, ubiquiti 99.8 4.2E-20 1.5E-24 128.5 9.3 79 1-79 18-106 (125)
45 1wx8_A Riken cDNA 4931431F19; 99.8 1.6E-20 5.5E-25 124.6 6.4 76 1-77 18-93 (96)
46 1yqb_A Ubiquilin 3; structural 99.8 4.9E-20 1.7E-24 123.5 8.6 76 1-77 23-98 (100)
47 2bwf_A Ubiquitin-like protein 99.8 1E-19 3.4E-24 115.5 9.6 71 1-72 5-75 (77)
48 1we7_A SF3A1 protein; structur 99.8 5.5E-20 1.9E-24 126.1 8.6 79 1-79 26-114 (115)
49 2fnj_B Transcription elongatio 99.8 5.5E-20 1.9E-24 126.4 8.5 76 1-77 1-84 (118)
50 4a20_A Ubiquitin-like protein 99.8 6.5E-20 2.2E-24 122.6 8.3 72 1-72 20-95 (98)
51 1j8c_A Ubiquitin-like protein 99.8 1.3E-19 4.3E-24 126.2 9.6 78 1-79 33-110 (125)
52 1v2y_A 3300001G02RIK protein; 99.8 3E-20 1E-24 125.6 5.8 76 1-76 8-99 (105)
53 2klc_A Ubiquilin-1; ubiquitin- 99.8 2.8E-19 9.6E-24 120.0 9.8 74 1-75 26-99 (101)
54 1wx7_A Ubiquilin 3; ubiquitin- 99.8 1.5E-19 5.2E-24 122.1 8.4 77 1-78 18-94 (106)
55 4ajy_B Transcription elongatio 99.8 2E-19 6.8E-24 123.4 8.9 73 1-73 1-81 (118)
56 1v5o_A 1700011N24RIK protein; 99.8 1.1E-19 3.9E-24 122.0 7.6 78 1-78 8-90 (102)
57 1wju_A NEDD8 ultimate buster-1 99.8 1.6E-19 5.5E-24 120.8 8.0 74 3-77 18-95 (100)
58 1ttn_A DC-UBP, dendritic cell- 99.8 1.6E-19 5.5E-24 122.1 7.9 76 1-76 24-99 (106)
59 3u30_A Ubiquitin, linear DI-ub 99.8 2.3E-19 7.7E-24 130.6 8.9 76 1-76 97-172 (172)
60 1wgh_A Ubiquitin-like 3, HCG-1 99.8 4.5E-19 1.6E-23 121.8 9.7 77 1-77 17-103 (116)
61 3u30_A Ubiquitin, linear DI-ub 99.8 4.3E-19 1.5E-23 129.1 10.0 77 1-77 21-97 (172)
62 3b08_A Polyubiquitin-C, ubiqui 99.8 7.3E-19 2.5E-23 124.6 10.2 76 1-76 77-152 (152)
63 3rt3_B Ubiquitin-like protein 99.8 1.6E-18 5.6E-23 124.3 10.0 76 1-76 3-81 (159)
64 3b08_A Polyubiquitin-C, ubiqui 99.8 2.3E-18 7.8E-23 122.0 10.5 77 1-77 1-77 (152)
65 4dbg_A Ranbp-type and C3HC4-ty 99.8 3.1E-18 1E-22 115.5 9.9 72 1-72 25-99 (105)
66 2kdb_A Homocysteine-responsive 99.8 1.5E-18 5E-23 116.2 6.8 70 1-70 24-99 (99)
67 3m63_B Ubiquitin domain-contai 99.8 6E-19 2.1E-23 118.4 4.6 71 1-72 29-99 (101)
68 2kd0_A LRR repeats and ubiquit 99.7 4.9E-18 1.7E-22 110.5 8.4 70 3-72 14-83 (85)
69 1v5t_A 8430435I17RIK protein; 99.7 3.9E-18 1.3E-22 112.0 7.2 71 1-72 8-82 (90)
70 1wgg_A Ubiquitin carboxyl-term 99.7 4.8E-18 1.6E-22 113.0 6.9 70 1-72 8-78 (96)
71 1wia_A Hypothetical ubiquitin- 99.7 7.1E-18 2.4E-22 111.6 7.2 73 1-76 8-81 (95)
72 1x1m_A Ubiquitin-like protein 99.7 9.9E-18 3.4E-22 113.5 7.8 74 1-74 13-101 (107)
73 2k4x_A 30S ribosomal protein S 99.7 5.7E-19 2E-23 105.8 0.3 43 100-145 1-43 (55)
74 2daf_A FLJ35834 protein; hypot 99.7 3.1E-17 1.1E-21 112.0 8.7 74 2-75 17-91 (118)
75 1wxv_A BAG-family molecular ch 99.7 3.6E-17 1.2E-21 107.5 8.5 71 1-72 8-84 (92)
76 1v86_A DNA segment, CHR 7, way 99.7 1.3E-17 4.6E-22 110.6 6.1 70 1-72 18-87 (95)
77 3ai5_A Yeast enhanced green fl 99.7 4.7E-17 1.6E-21 128.2 9.4 74 1-74 234-307 (307)
78 3j20_Y 30S ribosomal protein S 99.7 3.7E-18 1.3E-22 100.4 2.3 40 102-144 4-43 (50)
79 2dzj_A Synaptic glycoprotein S 99.7 2.4E-17 8.2E-22 108.1 6.1 69 1-69 11-85 (88)
80 2dzm_A FAS-associated factor 1 99.7 2.8E-17 9.4E-22 110.2 6.2 74 1-75 9-84 (100)
81 2kjr_A CG11242; UBL, ubiquitin 99.7 8.7E-17 3E-21 106.8 8.4 70 1-70 16-93 (95)
82 4b6w_A Tubulin-specific chaper 99.7 1.2E-16 4.2E-21 104.2 6.5 71 2-72 4-83 (86)
83 2io1_B Small ubiquitin-related 99.7 4.2E-16 1.4E-20 103.3 8.7 77 1-77 8-84 (94)
84 2kj6_A Tubulin folding cofacto 99.6 4.2E-16 1.5E-20 103.8 7.5 70 2-71 16-94 (97)
85 1oqy_A HHR23A, UV excision rep 99.6 2.9E-16 9.9E-21 126.6 7.2 78 1-78 8-89 (368)
86 1wf9_A NPL4 family protein; be 99.6 3.4E-16 1.2E-20 105.9 6.2 71 1-72 8-94 (107)
87 1v6e_A Cytoskeleton-associated 99.6 1.2E-15 4E-20 101.1 7.8 70 2-71 9-86 (95)
88 2io0_B Small ubiquitin-related 99.6 3.3E-15 1.1E-19 98.4 9.0 77 1-77 6-82 (91)
89 1t0y_A Tubulin folding cofacto 99.6 4.9E-15 1.7E-19 102.4 8.5 71 1-71 7-85 (122)
90 2d07_B Ubiquitin-like protein 99.6 8.3E-15 2.9E-19 96.8 9.1 76 1-76 18-93 (93)
91 2kzr_A Ubiquitin thioesterase 99.6 3.2E-15 1.1E-19 97.2 6.0 70 1-71 1-76 (86)
92 1wz0_A Ubiquitin-like protein 99.5 1.3E-14 4.6E-19 97.7 7.5 78 1-78 25-102 (104)
93 1wm3_A Ubiquitin-like protein 99.5 4.6E-14 1.6E-18 88.9 8.6 70 1-70 2-71 (72)
94 3shq_A UBLCP1; phosphatase, hy 99.5 1.8E-14 6.2E-19 114.3 7.9 73 1-74 6-81 (320)
95 2eke_C Ubiquitin-like protein 99.5 4E-14 1.4E-18 95.6 8.4 75 1-76 32-106 (106)
96 2k8h_A Small ubiquitin protein 99.5 2.1E-14 7.1E-19 97.6 6.4 77 1-77 27-103 (110)
97 3a4r_A Nfatc2-interacting prot 99.5 2.8E-13 9.7E-18 86.8 9.1 70 1-70 8-78 (79)
98 1wjn_A Tubulin-folding protein 99.4 1.4E-12 4.8E-17 86.4 8.1 71 2-72 11-92 (97)
99 3kyd_D Small ubiquitin-related 99.3 4.3E-11 1.5E-15 81.7 9.4 75 1-75 41-115 (115)
100 3pge_A SUMO-modified prolifera 99.2 1E-10 3.5E-15 86.9 8.9 77 1-78 30-106 (200)
101 3tix_A Ubiquitin-like protein 99.1 1.1E-10 3.8E-15 85.8 6.9 77 1-78 58-134 (207)
102 3goe_A DNA repair protein RAD6 99.1 1.6E-09 5.4E-14 68.5 9.2 70 2-71 11-81 (82)
103 2pjh_A Protein NPL4, nuclear p 99.0 2.9E-10 1E-14 72.8 4.2 69 1-70 5-78 (80)
104 3v7o_A Minor nucleoprotein VP3 98.9 1.2E-10 3.9E-15 86.8 0.2 77 1-78 22-98 (227)
105 2jxx_A Nfatc2-interacting prot 98.8 5.1E-08 1.7E-12 64.5 8.7 69 2-70 27-96 (97)
106 3uf8_A Ubiquitin-like protein 98.6 1.3E-07 4.6E-12 70.5 7.7 76 2-78 23-98 (209)
107 3ix6_A TS, tsase, thymidylate 98.5 9.2E-09 3.1E-13 82.3 -0.0 76 2-78 23-98 (360)
108 4efo_A Serine/threonine-protei 98.5 5.6E-07 1.9E-11 59.1 7.8 53 9-61 22-76 (94)
109 2l76_A Nfatc2-interacting prot 98.5 1.3E-06 4.5E-11 57.2 8.7 69 2-71 23-91 (95)
110 2al3_A TUG long isoform; TUG U 98.4 2.1E-06 7.3E-11 55.7 7.7 71 1-71 10-80 (90)
111 2kc2_A Talin-1, F1; FERM, adhe 98.3 1.5E-06 5E-11 60.1 7.0 69 2-70 13-120 (128)
112 4da1_A Protein phosphatase 1K, 98.3 9E-08 3.1E-12 77.3 0.0 76 2-78 32-107 (389)
113 2bps_A YUKD protein; ubiquitin 98.3 4.3E-06 1.5E-10 53.4 7.5 68 2-69 6-80 (81)
114 3qx1_A FAS-associated factor 1 98.1 2.4E-05 8.2E-10 49.9 8.3 68 2-70 9-81 (84)
115 2dzk_A UBX domain-containing p 97.8 0.00019 6.6E-09 48.0 8.9 69 2-70 15-88 (109)
116 1wj4_A KIAA0794 protein; UBX d 97.7 0.0002 6.8E-09 49.1 7.7 68 2-70 45-117 (124)
117 2cr5_A Reproduction 8; UBX dom 97.3 0.0012 4E-08 44.1 7.6 69 2-71 25-97 (109)
118 1s3s_G P47 protein; AAA ATPase 97.2 0.0013 4.5E-08 45.1 6.9 66 2-67 54-123 (127)
119 2l32_A Small archaeal modifier 97.1 0.0015 5.2E-08 40.6 5.7 66 1-77 1-66 (74)
120 1ryj_A Unknown; beta/alpha pro 97.0 0.0061 2.1E-07 37.2 8.4 66 1-76 5-70 (70)
121 2daj_A KIAA0977 protein, COBL- 96.8 0.0024 8.3E-08 40.7 5.0 62 2-63 12-76 (91)
122 4a3p_A Ubiquitin carboxyl-term 96.8 0.0044 1.5E-07 46.1 7.3 65 12-76 141-212 (217)
123 2zkr_2 60S ribosomal protein L 96.7 0.0006 2E-08 44.4 1.8 23 117-144 15-37 (97)
124 3jyu_A Ubiquitin carboxyl-term 96.6 0.011 3.9E-07 44.3 8.5 64 13-76 154-224 (231)
125 1vjk_A Molybdopterin convertin 96.5 0.02 6.7E-07 37.1 8.1 71 1-76 10-98 (98)
126 4e71_A Plexin-B2, MM1; transme 96.4 0.023 7.9E-07 38.0 8.3 62 10-71 23-109 (111)
127 1tyg_B YJBS; alpha beta barrel 96.4 0.01 3.4E-07 38.1 6.0 61 9-76 26-87 (87)
128 3rpf_C Molybdopterin convertin 96.4 0.014 4.6E-07 35.9 6.4 71 1-76 1-74 (74)
129 2juo_A GA-binding protein alph 96.0 0.039 1.3E-06 35.0 7.2 62 13-74 5-66 (89)
130 3ivf_A Talin-1; FERM domain, c 96.0 0.046 1.6E-06 43.3 9.5 76 2-78 5-97 (371)
131 1oey_A P67-PHOX, neutrophil cy 95.9 0.023 8E-07 36.0 5.8 45 2-48 7-51 (83)
132 2k5p_A THis protein, thiamine- 95.9 0.0084 2.9E-07 37.6 3.7 67 1-77 1-70 (78)
133 3po0_A Small archaeal modifier 95.7 0.077 2.6E-06 33.4 8.0 61 11-76 18-89 (89)
134 3h6n_A Plexin-D1; structural g 95.7 0.098 3.3E-06 35.7 8.8 64 9-72 15-104 (127)
135 3dwg_C 9.5 kDa culture filtrat 95.7 0.056 1.9E-06 34.4 7.2 74 1-76 1-93 (93)
136 1f0z_A THis protein; ubiquitin 95.6 0.017 5.8E-07 34.7 4.2 66 1-76 1-66 (66)
137 2r2o_A Plexin-B1; effector dom 95.6 0.071 2.4E-06 36.9 7.8 62 11-72 41-128 (138)
138 2kl0_A Putative thiamin biosyn 95.5 0.016 5.6E-07 35.7 3.9 66 1-77 1-66 (73)
139 4e74_A Plexin-A4; RBD, structu 94.8 0.12 4E-06 34.9 6.9 62 11-72 27-114 (117)
140 1wgk_A Riken cDNA 2900073H19 p 94.5 0.13 4.6E-06 34.3 6.5 75 1-77 12-109 (114)
141 2kvr_A Ubiquitin carboxyl-term 94.3 0.059 2E-06 36.9 4.5 33 13-45 58-90 (130)
142 2qjl_A URM1, ubiquitin-related 94.2 0.41 1.4E-05 30.7 8.3 73 1-76 2-99 (99)
143 1vd2_A Protein kinase C, IOTA 93.7 0.32 1.1E-05 31.1 6.8 46 3-48 7-54 (89)
144 2q5w_D Molybdopterin convertin 93.6 0.12 4E-06 31.5 4.5 60 11-76 16-77 (77)
145 1fm0_D Molybdopterin convertin 93.6 0.14 4.9E-06 31.4 5.0 59 12-76 18-81 (81)
146 2cu3_A Unknown function protei 93.4 0.19 6.4E-06 29.7 5.1 60 9-76 5-64 (64)
147 1h4r_A Merlin; FERM, neurofibr 93.2 0.88 3E-05 34.9 9.9 70 2-72 24-98 (314)
148 1ef1_A Moesin; membrane, FERM 93.1 0.83 2.9E-05 34.6 9.6 71 1-72 2-78 (294)
149 3kuz_A Plexin-C1; structural g 93.0 0.69 2.4E-05 31.4 7.9 60 11-70 39-124 (126)
150 2kmc_A Fermitin family homolog 92.3 1.3 4.3E-05 28.9 8.1 70 2-71 21-98 (102)
151 2l52_A Methanosarcina acetivor 92.3 0.64 2.2E-05 29.9 6.8 72 1-76 4-99 (99)
152 2k9x_A Tburm1, uncharacterized 92.1 0.078 2.7E-06 35.3 2.3 75 1-77 5-103 (110)
153 3ig3_A Plxna3 protein; plexin 91.7 1.2 4E-05 38.0 9.4 63 11-73 247-335 (627)
154 2g1e_A Hypothetical protein TA 91.6 0.6 2E-05 29.0 6.0 62 14-76 18-90 (90)
155 3ivf_A Talin-1; FERM domain, c 91.4 1.3 4.4E-05 34.9 9.0 70 2-71 87-166 (371)
156 1rws_A Hypothetical protein PF 91.3 0.042 1.5E-06 33.9 0.3 54 14-76 24-77 (77)
157 1y8x_B Ubiquitin-activating en 91.0 0.5 1.7E-05 30.7 5.2 59 12-70 6-82 (98)
158 2kmm_A Guanosine-3',5'-BIS(dip 90.9 1 3.6E-05 26.7 6.4 62 1-71 1-62 (73)
159 2i1j_A Moesin; FERM, coiled-co 90.3 2 6.7E-05 36.2 9.6 71 1-72 5-81 (575)
160 4eut_A Serine/threonine-protei 90.2 1.4 4.8E-05 34.4 8.3 51 11-61 322-374 (396)
161 3qij_A Protein 4.1; cytoskelet 89.4 1.7 5.8E-05 33.2 7.9 60 1-60 18-83 (296)
162 1ip9_A BEM1 protein; ubiquitin 89.3 1.1 3.9E-05 28.2 5.6 39 9-48 20-58 (85)
163 3hm6_X Plexin-B1; structural g 88.9 2.2 7.5E-05 36.4 8.7 63 11-73 274-362 (644)
164 3onh_A Ubiquitin-activating en 88.8 1.4 4.7E-05 30.0 6.1 56 15-71 10-78 (127)
165 2ylm_A Ubiquitin carboxyl-term 88.1 0.59 2E-05 39.0 4.8 33 13-45 38-70 (530)
166 2c7h_A RBBP6, retinoblastoma-b 87.2 4 0.00014 25.8 7.2 42 3-44 9-52 (86)
167 1j0g_A Hypothetical protein 18 86.1 2.9 9.9E-05 26.2 5.9 63 14-76 27-90 (92)
168 1wgr_A Growth factor receptor- 85.7 2 6.8E-05 28.0 5.4 67 3-69 12-89 (100)
169 3u52_E Phenol hydroxylase comp 85.3 3.9 0.00013 27.3 6.7 59 12-70 39-107 (119)
170 3qa8_A MGC80376 protein; kinas 84.7 0.91 3.1E-05 39.0 4.3 50 10-59 321-371 (676)
171 1wgy_A RAP guanine nucleotide 83.6 7.2 0.00025 25.5 7.6 63 8-72 17-86 (104)
172 2inc_C TOUB protein; DIIRON, 4 82.0 7.3 0.00025 24.4 8.3 61 12-72 14-82 (83)
173 3ge3_C Toluene-4-monooxygenase 80.9 8.1 0.00028 24.2 7.2 60 12-71 16-82 (84)
174 3u5c_e 40S ribosomal protein S 80.3 0.13 4.6E-06 30.6 -1.8 27 74-100 5-31 (63)
175 1wfl_A Zinc finger protein 216 80.3 0.38 1.3E-05 29.7 0.2 26 114-143 35-62 (74)
176 1wg2_A Zinc finger (AN1-like) 77.6 1.2 4E-05 26.7 1.8 22 118-143 29-52 (64)
177 2ylm_A Ubiquitin carboxyl-term 77.2 11 0.00039 31.2 8.3 48 12-59 353-408 (530)
178 3hk0_A Growth factor receptor- 76.3 7.1 0.00024 29.4 6.3 56 3-58 11-73 (256)
179 2hj1_A Hypothetical protein; s 75.1 4.6 0.00016 26.0 4.3 60 12-76 27-89 (97)
180 1wfh_A Zinc finger (AN1-like) 74.4 1.4 4.8E-05 26.3 1.5 22 118-143 29-52 (64)
181 1wfp_A Zinc finger (AN1-like) 74.3 1.4 4.7E-05 27.2 1.5 23 118-144 39-63 (74)
182 1v8c_A MOAD related protein; r 74.2 6.8 0.00023 27.6 5.4 62 14-77 17-88 (168)
183 2eel_A Cell death activator CI 74.0 6.6 0.00023 25.0 4.8 49 21-72 28-78 (91)
184 1q1o_A Cell division control p 73.7 4.4 0.00015 26.2 3.9 38 10-47 22-64 (98)
185 2xzm_X RPS30E; ribosome, trans 73.2 0.64 2.2E-05 29.0 -0.2 27 73-99 4-31 (80)
186 3h9d_A ATG8, microtubule-assoc 73.0 7.8 0.00027 25.8 5.2 58 15-72 52-113 (119)
187 3au4_A Myosin-X; protein-prote 71.6 6.9 0.00023 32.4 5.7 45 1-45 217-263 (555)
188 2lgx_A Fermitin family homolog 70.1 1.3 4.3E-05 29.3 0.7 60 11-70 36-100 (112)
189 2v1y_A Phosphatidylinositol-4, 69.9 11 0.00037 24.7 5.3 32 3-34 22-53 (108)
190 1x4w_A Hypothetical protein FL 68.8 1.2 4.2E-05 26.9 0.4 21 119-143 33-55 (67)
191 1f2r_I Inhibitor of caspase-ac 67.9 14 0.00049 23.8 5.4 48 21-71 37-88 (100)
192 4gmv_A RAS-associated and plec 67.8 13 0.00045 28.4 6.1 54 3-56 34-94 (281)
193 3m95_A Autophagy related prote 67.8 8.9 0.0003 25.8 4.6 58 15-72 57-118 (125)
194 1pqs_A Cell division control p 67.2 4.8 0.00016 24.8 2.9 36 12-47 3-43 (77)
195 2r2q_A Gamma-aminobutyric acid 66.7 9.9 0.00034 24.8 4.6 57 15-71 48-108 (110)
196 1wff_A Riken cDNA 2810002D23 p 66.5 1.6 5.5E-05 27.6 0.6 22 118-143 40-63 (85)
197 3r8s_T 50S ribosomal protein L 65.5 15 0.00052 23.3 5.2 33 10-42 27-59 (93)
198 3pvl_A Myosin VIIA isoform 1; 64.3 11 0.00038 32.2 5.6 45 1-45 264-309 (655)
199 3tca_A Amyloid beta A4 precurs 64.1 18 0.00062 26.6 6.3 37 3-39 37-73 (291)
200 1eo6_A GATE-16, golgi-associat 63.8 13 0.00043 24.6 4.7 58 15-72 49-110 (117)
201 3iz6_Z 40S ribosomal protein S 62.7 1.3 4.3E-05 26.3 -0.4 22 77-98 8-29 (62)
202 1x4v_A Hypothetical protein LO 62.1 2.5 8.7E-05 25.1 0.9 24 117-143 26-51 (63)
203 1vq8_S 50S ribosomal protein L 61.9 18 0.0006 22.6 4.9 34 10-43 22-55 (85)
204 3rui_B Autophagy-related prote 61.2 15 0.00053 24.3 4.8 58 15-72 51-112 (118)
205 2zjd_A Microtubule-associated 60.9 14 0.00048 25.0 4.6 58 15-72 57-119 (130)
206 3tve_T 50S ribosomal protein L 59.2 18 0.00062 22.9 4.6 31 11-41 22-52 (92)
207 2zjr_Q 50S ribosomal protein L 58.7 16 0.00054 23.3 4.3 30 13-42 25-54 (95)
208 2dhz_A RAP guanine nucleotide 57.6 28 0.00097 23.2 5.5 62 9-72 18-92 (120)
209 3j21_T 50S ribosomal protein L 56.0 25 0.00087 21.9 4.9 34 10-43 23-56 (86)
210 2nvu_B Maltose binding protein 53.1 26 0.00091 30.2 6.1 59 12-70 713-789 (805)
211 1wfe_A Riken cDNA 2310008M20 p 51.2 5.9 0.0002 24.9 1.3 24 117-143 39-64 (86)
212 3hvz_A Uncharacterized protein 50.3 40 0.0014 20.4 5.9 61 2-71 7-67 (78)
213 1wys_A Riken cDNA 2310008M20 p 49.7 6.3 0.00021 24.2 1.2 24 117-143 28-53 (75)
214 3j21_g 50S ribosomal protein L 48.0 10 0.00035 21.4 1.8 21 118-144 14-34 (51)
215 2zkr_s 60S ribosomal protein L 45.0 38 0.0013 23.6 4.8 32 11-42 94-125 (156)
216 3chb_D Cholera toxin; toxin/re 44.6 27 0.00094 21.8 3.6 31 3-33 39-69 (104)
217 1ibx_B Chimera of IGG binding 44.2 20 0.00068 24.7 3.2 48 21-71 82-133 (145)
218 3lxf_A Ferredoxin; iron, iron- 43.5 32 0.0011 21.7 4.0 26 2-27 2-27 (104)
219 2jr3_A Pelovaterin; beta-defen 42.7 8.5 0.00029 20.1 0.8 10 121-130 3-12 (42)
220 3f5r_A FACT complex subunit PO 42.3 37 0.0013 24.5 4.5 46 2-47 86-131 (191)
221 4gdk_A Ubiquitin-like protein 41.5 40 0.0014 21.1 4.1 59 14-72 23-85 (91)
222 2dkt_A Ring finger and CHY zin 41.2 15 0.0005 25.4 2.1 23 114-144 67-89 (143)
223 4a17_R RPL23A, 60S ribosomal p 40.8 52 0.0018 22.8 4.9 34 10-43 87-120 (150)
224 3u5e_X 60S ribosomal protein L 40.1 51 0.0017 22.6 4.7 32 11-42 80-111 (142)
225 3h0n_A Uncharacterized protein 38.2 15 0.00052 26.2 1.9 24 118-142 145-170 (188)
226 4dxe_H ACP, acyl carrier prote 37.6 28 0.00095 22.0 3.0 28 13-40 18-45 (101)
227 2al6_A Focal adhesion kinase 1 37.3 30 0.001 27.0 3.7 54 5-58 12-76 (375)
228 4dxa_B KREV interaction trappe 37.2 37 0.0013 25.8 4.2 34 1-38 6-41 (322)
229 3w1s_C Ubiquitin-like protein 37.1 56 0.0019 20.5 4.3 57 14-72 26-85 (91)
230 4eku_A Protein-tyrosine kinase 36.9 52 0.0018 26.1 5.0 52 8-59 35-97 (392)
231 3hrd_D Nicotinate dehydrogenas 35.8 39 0.0013 23.5 3.7 26 2-28 5-30 (160)
232 1n62_A Carbon monoxide dehydro 35.8 39 0.0013 23.6 3.7 27 2-29 5-31 (166)
233 1rm6_C 4-hydroxybenzoyl-COA re 35.4 41 0.0014 23.2 3.8 27 3-30 5-31 (161)
234 1ffv_A CUTS, iron-sulfur prote 35.3 32 0.0011 24.0 3.2 27 2-29 5-31 (163)
235 2wux_A Polyhedrin; microcrysta 35.2 26 0.00089 25.6 2.7 29 114-145 121-149 (245)
236 1t3q_A Quinoline 2-oxidoreduct 34.3 42 0.0014 23.2 3.7 28 1-29 10-37 (168)
237 3iz5_X 60S ribosomal protein L 33.3 54 0.0019 22.7 4.0 33 11-43 90-122 (152)
238 1ltr_D ETB-R2, heat-labIle ent 33.3 35 0.0012 21.7 2.7 31 3-33 38-68 (113)
239 1wfy_A Regulator of G-protein 33.1 99 0.0034 20.0 5.0 60 8-70 25-86 (104)
240 1wmh_B Partitioning defective- 32.9 90 0.0031 19.4 5.3 45 3-47 7-54 (86)
241 2bt6_A Adrenodoxin 1; rutheniu 31.6 57 0.0019 20.4 3.8 26 2-27 8-33 (108)
242 1wz3_A Autophagy 12B, ATG12B, 31.5 51 0.0017 20.9 3.4 57 14-72 31-90 (96)
243 1vq8_Z 50S ribosomal protein L 31.5 26 0.00088 21.7 1.9 25 118-144 27-51 (83)
244 3f14_A Uncharacterized NTF2-li 31.4 93 0.0032 19.1 4.9 24 97-121 88-111 (112)
245 2wlb_A ETP1-FD, electron trans 30.6 68 0.0023 19.8 4.0 27 2-28 5-31 (103)
246 2y3a_A Phosphatidylinositol-4, 30.0 65 0.0022 29.3 4.9 69 3-72 54-136 (1092)
247 2yww_A Aspartate carbamoyltran 29.4 33 0.0011 23.8 2.4 27 119-145 106-143 (149)
248 3er7_A Uncharacterized NTF2-li 29.0 62 0.0021 21.3 3.7 25 95-119 94-118 (131)
249 1tt5_B Ubiquitin-activating en 28.9 18 0.00063 29.2 1.1 56 15-70 345-418 (434)
250 1d4b_A CIDE B, human cell deat 28.5 21 0.0007 24.0 1.1 47 21-71 54-102 (122)
251 2y5c_A Adrenodoxin-like protei 28.4 70 0.0024 20.1 3.8 25 2-26 7-31 (109)
252 2ns5_A Partitioning-defective 26.8 1.2E+02 0.004 18.8 6.9 66 1-68 3-78 (85)
253 2ktr_A Sequestosome-1; autopha 25.9 1.1E+02 0.0037 20.2 4.3 27 21-47 57-84 (117)
254 2jmo_A Parkin; IBR, E3 ligase, 25.7 34 0.0012 20.7 1.8 15 118-132 25-39 (80)
255 1uwm_A Ferredoxin VI, FDVI; el 25.6 1E+02 0.0035 19.1 4.2 26 2-27 2-27 (106)
256 1b44_D ETB-POL, protein (B-POL 25.5 44 0.0015 21.7 2.3 31 3-33 38-68 (129)
257 2os5_A Acemif; macrophage migr 25.5 1.1E+02 0.0036 19.4 4.3 55 19-79 16-70 (119)
258 3cjl_A Domain of unknown funct 25.1 71 0.0024 20.0 3.2 38 2-39 7-46 (88)
259 1dd4_C 50S ribosomal protein L 24.7 63 0.0022 17.1 2.5 17 23-39 18-34 (40)
260 1xlq_A Putidaredoxin, PDX; [2F 24.2 1E+02 0.0035 19.1 4.0 26 2-27 2-27 (106)
261 1awd_A Ferredoxin; electron tr 24.1 96 0.0033 18.8 3.7 28 1-29 1-28 (94)
262 1jq4_A Methane monooxygenase c 24.0 89 0.003 19.1 3.6 28 2-29 6-33 (98)
263 3dm8_A Uncharacterized protein 24.0 1.5E+02 0.0051 19.0 5.1 24 96-120 99-122 (143)
264 2aus_D NOP10, ribosome biogene 24.0 42 0.0014 19.5 1.8 21 116-139 15-35 (60)
265 3hui_A Ferredoxin; cytochrome 23.6 1.1E+02 0.0038 20.0 4.2 25 2-26 23-47 (126)
266 1frr_A Ferredoxin I; electron 23.2 94 0.0032 18.7 3.6 26 2-28 3-28 (95)
267 2apo_B Ribosome biogenesis pro 23.0 33 0.0011 20.0 1.2 22 115-139 15-36 (60)
268 2pw4_A Uncharacterized protein 22.6 43 0.0015 24.0 2.0 24 118-142 145-170 (188)
269 2dls_A PDZ-rhogef, RHO guanine 22.5 1.3E+02 0.0043 17.9 4.1 43 31-73 42-85 (93)
270 1uoy_A Bubble protein; exudate 22.0 24 0.00082 20.3 0.4 9 134-142 21-29 (64)
271 1l1o_C Replication protein A 7 21.7 31 0.0011 24.2 1.1 25 119-144 44-68 (181)
272 1wf7_A Enigma homologue protei 21.4 1.5E+02 0.005 18.0 4.5 46 31-77 42-89 (103)
273 3u50_C Telomerase-associated p 21.1 38 0.0013 23.9 1.4 22 120-144 44-65 (172)
274 3djh_A Macrophage migration in 20.8 95 0.0032 19.6 3.3 24 24-47 77-100 (114)
275 2cu1_A Mitogen-activated prote 20.6 1.8E+02 0.0061 18.7 4.8 41 3-46 9-50 (103)
276 2riq_A Poly [ADP-ribose] polym 20.4 32 0.0011 24.1 0.9 21 118-142 78-98 (160)
277 3hhm_A Phosphatidylinositol-4, 20.4 1.3E+02 0.0043 27.5 4.9 31 4-34 46-76 (1091)
278 2i1s_A Hypothetical protein; m 20.3 2.2E+02 0.0077 19.7 6.2 40 2-41 10-52 (188)
279 3qt1_I DNA-directed RNA polyme 20.2 49 0.0017 22.3 1.8 25 118-145 24-53 (133)
280 1vk6_A NADH pyrophosphatase; 1 20.1 46 0.0016 24.8 1.8 25 118-144 107-131 (269)
281 2pkt_A PDZ and LIM domain prot 20.0 1.4E+02 0.0049 17.4 4.6 43 31-73 40-84 (91)
No 1
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=100.00 E-value=5.4e-61 Score=345.86 Aligned_cols=144 Identities=72% Similarity=1.033 Sum_probs=62.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKR 80 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k~ 80 (145)
|+|+|++++|+++.|+|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||++++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccccccceeeeeeeeeEEEcCCCcEEEecccCCCCCCCccEEeceeCCcccccCC
Q 032224 81 KKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 81 ~k~~~~~pk~~k~~~kk~k~~v~k~~~v~~~~~~~~l~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
+|+.|++||+++|++||+++++|+||+||+||+|+|++++||++.||+|||||.|+||||||||
T Consensus 81 kKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~cg~g~fma~h~~r~~cgkc 144 (152)
T 3u5c_f 81 KXXXXXXXXXXXXXXXXXXXXVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKC 144 (152)
T ss_dssp -CCCCCCCSCCCCCCCCCCCCCCCCSEECSSSCEECCSCBCCSTTSCSSSBEEECSSCEEESSS
T ss_pred ccccccccccccccccccccceeeEEEEccCCeEEECcCcCCCccCCCceEecccCCCcccCCC
Confidence 9999999999999999999999999999999999999999998889999999999999999998
No 2
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=100.00 E-value=1.1e-52 Score=310.56 Aligned_cols=137 Identities=41% Similarity=0.696 Sum_probs=64.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKR 80 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k~ 80 (145)
|+|+|++++|++++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|+ ++++|+|+++++||++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~kr 75 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKKK 75 (189)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcccc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999999999988
Q ss_pred ccccccCCcccccccceeeeeeeeeEEEcCCCcEEEecccCCCCCCCccEEeceeCCcccccCC
Q 032224 81 KKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 81 ~k~~~~~pk~~k~~~kk~k~~v~k~~~v~~~~~~~~l~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
+|+.|+|||+++|++|++++++|+||+||+||+|+|++++|| +||+|+|||.|+||||||+|
T Consensus 76 kK~~~~tPK~~k~~kKkvkl~~Lk~y~Vd~~Gkv~~~~~~Cp--~Cg~g~fma~h~dR~~CGkC 137 (189)
T 2xzm_9 76 KKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGCP--KCGPGIFMAKHYDRHYCGKC 137 (189)
T ss_dssp CCCCCCSSSCCCCCCCCCCCSCCCCEEEETTTEEEECSEECS--TTCSSCEEEECSSCEEETTT
T ss_pred cccccCCCccccccccccCCceeeEEEECCCceEEEccccCC--ccCCCccccCccCCCccCCc
Confidence 899999999999999999999999999999999999999999 69999999999999999998
No 3
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.90 E-value=1.7e-23 Score=137.22 Aligned_cols=79 Identities=54% Similarity=0.904 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k 79 (145)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||+..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGL 79 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999753
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=132.07 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~g 75 (145)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999887
No 5
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.89 E-value=1.4e-22 Score=128.15 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.88 E-value=1.4e-22 Score=134.34 Aligned_cols=80 Identities=93% Similarity=1.235 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKR 80 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k~ 80 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||...+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADLR 81 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998654
No 7
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=1.3e-22 Score=131.25 Aligned_cols=78 Identities=78% Similarity=1.134 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+-
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG 81 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999863
No 8
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.88 E-value=3.1e-22 Score=126.60 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 9
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.88 E-value=1.1e-22 Score=141.29 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCcHHHHHHHHH-----HHhCCCc--CceeeeeCCeeccCCCccccccccCC------CE
Q 032224 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (145)
Q Consensus 1 M~I~Vk~~~g~~~-~l~V~~~~TV~~LK~~I~-----~~~gip~--~~q~L~~~G~~L~d~~tL~~~gi~~~------st 66 (145)
|+|+|++.+|+.+ ++++++++||.+||++|+ +.+++|+ ++|+|+|+|+.|+|+.+|++|+|+++ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 799999999999999994 5567886 89999999999999999999999988 68
Q ss_pred EEEEEEecCCccccccccccCCcccc
Q 032224 67 LHLVLRLRGGAKKRKKKTYTKPKKIK 92 (145)
Q Consensus 67 i~l~~~~~gg~~k~~k~~~~~pk~~k 92 (145)
++|+++++||+++ |+.|++|+++.
T Consensus 97 mhlVlrl~g~~kk--kk~~~~pkk~~ 120 (126)
T 1se9_A 97 MHVIIQAPVTEKE--KKPKGDPKMNK 120 (126)
T ss_dssp EEEEECCCSSCCC--C----------
T ss_pred EEEEeccCCcccc--ccCCCCCCCCC
Confidence 9999999998775 78899988754
No 10
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=2.2e-22 Score=131.93 Aligned_cols=77 Identities=86% Similarity=1.257 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|+++++||+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.88 E-value=1.5e-22 Score=131.85 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999997
No 12
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.8e-22 Score=133.88 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=3.2e-22 Score=129.34 Aligned_cols=77 Identities=91% Similarity=1.240 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999986
No 14
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=4.6e-22 Score=129.53 Aligned_cols=77 Identities=34% Similarity=0.526 Sum_probs=75.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999986
No 15
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.87 E-value=3.9e-22 Score=127.76 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|++.+|+++.++|.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=130.79 Aligned_cols=77 Identities=36% Similarity=0.603 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++++.||+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999987
No 17
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.87 E-value=9.9e-22 Score=129.60 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~ 70 (145)
|+|+|+++.|+++.++++|++||.+||++|++++|+|+++|+|+|+|++|+|+.+|++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 18
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.86 E-value=8.3e-22 Score=130.83 Aligned_cols=77 Identities=30% Similarity=0.474 Sum_probs=73.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCC-CccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~-~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|+|++.++ ++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||+++++|+|+++++||++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~~ 93 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSCC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCCC
Confidence 6899999877 899999999999999999999999999999999999999999 9999999999999999999999863
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.7e-21 Score=127.37 Aligned_cols=77 Identities=36% Similarity=0.620 Sum_probs=74.2
Q ss_pred CEEEEEeCCC-CEEEE-EEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g-~~~~l-~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|+.++| +++.+ +|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 7999999999 69999 59999999999999999999999999999999999999999999999999999999999985
No 20
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.86 E-value=1.4e-21 Score=127.29 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCee-ccCCCccccccccCCCEEEEEEEe
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~-L~d~~tL~~~gi~~~sti~l~~~~ 73 (145)
|+|+|+.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||++|++|+|++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998753
No 21
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.86 E-value=2.4e-21 Score=132.20 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+.++|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999997
No 22
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.86 E-value=3.5e-21 Score=128.33 Aligned_cols=79 Identities=92% Similarity=1.269 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k 79 (145)
|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++||..-
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998753
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.86 E-value=2.1e-21 Score=127.78 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEec
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~ 74 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998764
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.85 E-value=1.4e-21 Score=130.26 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|++++|+++.++|.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.85 E-value=3.4e-21 Score=126.26 Aligned_cols=77 Identities=32% Similarity=0.563 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +|++|+|++++.++..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQTH 82 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC---
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999999877654
No 26
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=128.49 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|++ |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999997 8999999999999999999999999999999999999999999999999999999999999999997
No 27
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.85 E-value=5.7e-21 Score=139.29 Aligned_cols=78 Identities=95% Similarity=1.296 Sum_probs=74.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||++
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999875
No 28
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=7.9e-21 Score=121.25 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEE-EEE-EcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEe
Q 032224 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (145)
Q Consensus 1 M~I~Vk~~~g~~~-~l~-V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~ 73 (145)
|+|+|++.+|+++ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 999999999999999999999999999999999999999999999999999999875
No 29
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.84 E-value=9.5e-21 Score=136.03 Aligned_cols=77 Identities=36% Similarity=0.610 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999996
No 30
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=4.9e-21 Score=126.54 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=73.0
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHHHh--CCCcCceeeeeCCeeccCCCccccc--cccCCCEEEEEEEec
Q 032224 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (145)
Q Consensus 1 M~I~Vk~~~g~--~~~l~V~~~~TV~~LK~~I~~~~--gip~~~q~L~~~G~~L~d~~tL~~~--gi~~~sti~l~~~~~ 74 (145)
|+|+|++.+++ ++.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999888 67778889999999999999998 9999999999999999999999999 999999999999999
Q ss_pred CCc
Q 032224 75 GGA 77 (145)
Q Consensus 75 gg~ 77 (145)
||+
T Consensus 88 gg~ 90 (93)
T 1wgd_A 88 SGP 90 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 985
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=122.64 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999999999999999 8999999874
No 32
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=2.5e-20 Score=123.72 Aligned_cols=77 Identities=29% Similarity=0.560 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHH---hCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~---~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|++.+|+.+.++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|+++...+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999998755444
No 33
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.84 E-value=6.9e-21 Score=127.53 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
|+|+|+++.|+++.|+|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 34
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.5e-21 Score=125.70 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEEc--CCCcHHHHHHHH-HHHhCCCcCceeeeeCCeeccCCCccccccc-cCCCEEEEEEEe
Q 032224 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~--~~~TV~~LK~~I-~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi-~~~sti~l~~~~ 73 (145)
|+|+|++++|+++.++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999998888755 999999999999 9999999999999999999999999999999 799999998864
No 35
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.73 E-value=1.8e-22 Score=128.20 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~g 75 (145)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999887
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=127.67 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 37
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=120.24 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEe
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~ 73 (145)
|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875
No 38
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.5e-20 Score=127.00 Aligned_cols=78 Identities=90% Similarity=1.256 Sum_probs=75.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
++|+|+.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|+++++||..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999863
No 39
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.83 E-value=8.7e-21 Score=129.29 Aligned_cols=78 Identities=32% Similarity=0.458 Sum_probs=74.7
Q ss_pred CEEEEEeC---CCCEEEEEEcC-CCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~---~g~~~~l~V~~-~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+.+ +|+++.++|++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 78999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 032224 77 AK 78 (145)
Q Consensus 77 ~~ 78 (145)
++
T Consensus 108 k~ 109 (111)
T 1we6_A 108 PS 109 (111)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 40
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.83 E-value=1.6e-20 Score=138.96 Aligned_cols=79 Identities=91% Similarity=1.248 Sum_probs=76.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k 79 (145)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||++-
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~ 184 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQT 184 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999753
No 41
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.83 E-value=5.3e-20 Score=119.09 Aligned_cols=72 Identities=31% Similarity=0.557 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHH---hCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~---~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|++.+|+.+.++|++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|+++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 789999999999999999999999999999998 899999999999999999999999999999999999875
No 42
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.82 E-value=5.2e-22 Score=138.65 Aligned_cols=78 Identities=95% Similarity=1.287 Sum_probs=1.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++++||..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~ 78 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII 78 (128)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999974
No 43
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.9e-20 Score=126.73 Aligned_cols=73 Identities=22% Similarity=0.431 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEe
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~ 73 (145)
|+|+|+.++|+++.|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999874
No 44
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=128.49 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHH------HhCCC--cCceeeeeCCeeccCCCccccccccCCC--EEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~------~~gip--~~~q~L~~~G~~L~d~~tL~~~gi~~~s--ti~l~ 70 (145)
|+|+|++++|++++++|++++||++||++|++ .+++| +++|+|+|+|++|+|+.+|++|+|++++ +|+|+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999998 67884 8999999999999999999999999776 78999
Q ss_pred EEecCCccc
Q 032224 71 LRLRGGAKK 79 (145)
Q Consensus 71 ~~~~gg~~k 79 (145)
+++.++.+.
T Consensus 98 ~r~~~~~~~ 106 (125)
T 2gow_A 98 ARETLPEPN 106 (125)
T ss_dssp ECSCCSSSS
T ss_pred ecCCCCccc
Confidence 999887654
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=1.6e-20 Score=124.59 Aligned_cols=76 Identities=28% Similarity=0.370 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|+.. |+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++.||+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 78999998 89999999999999999999999999999999999999999999999999999999999999999875
No 46
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=4.9e-20 Score=123.55 Aligned_cols=76 Identities=36% Similarity=0.483 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|+..+|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|++++.++.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 78999998886 79999999999999999999999999999999999999999999999999999999999988864
No 47
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.82 E-value=1e-19 Score=115.52 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 8999999999999999999999999999999999999999999999999999999999998764
No 48
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.81 E-value=5.5e-20 Score=126.10 Aligned_cols=79 Identities=28% Similarity=0.558 Sum_probs=72.9
Q ss_pred CEEEEEeCC----------CCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEE
Q 032224 1 MQIFVKTLT----------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~----------g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~ 70 (145)
++|.|+.++ |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 367777753 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccc
Q 032224 71 LRLRGGAKK 79 (145)
Q Consensus 71 ~~~~gg~~k 79 (145)
++++||+++
T Consensus 106 ~rl~GGk~~ 114 (115)
T 1we7_A 106 LKERSGPSS 114 (115)
T ss_dssp ECCCSCCSC
T ss_pred EEcCCCCCC
Confidence 999999753
No 49
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.81 E-value=5.5e-20 Score=126.43 Aligned_cols=76 Identities=28% Similarity=0.428 Sum_probs=70.8
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCcccccccc-------CCCEEEEEEE
Q 032224 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~-------~~sti~l~~~ 72 (145)
|+++|+...++ ++.++|.+++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|||+ ++++|+|+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 78888888776 599999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCc
Q 032224 73 LRGGA 77 (145)
Q Consensus 73 ~~gg~ 77 (145)
.||.
T Consensus 81 -~~g~ 84 (118)
T 2fnj_B 81 -ADDT 84 (118)
T ss_dssp -SSSC
T ss_pred -CCCc
Confidence 6664
No 50
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.81 E-value=6.5e-20 Score=122.61 Aligned_cols=72 Identities=21% Similarity=0.440 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEE--EEcCCCcHHHHHHHH-HHHhCCCcCceeeeeCCeeccCCCccccccc-cCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l--~V~~~~TV~~LK~~I-~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi-~~~sti~l~~~ 72 (145)
|+|+|++++|+.|.+ +|++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+|+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 789999999997766 666999999999999 8888999999999999999999999999999 99999999985
No 51
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.3e-19 Score=126.18 Aligned_cols=78 Identities=29% Similarity=0.391 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k 79 (145)
|+|+|+.. |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++++.||+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~~ 110 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSSS 110 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-------
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCCC
Confidence 78999998 8999999999999999999999999999999999999999999999999999999999999999998753
No 52
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=3e-20 Score=125.62 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=71.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcC---------------ceeeeeCCeecc-CCCccccccccCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~---------------~q~L~~~G~~L~-d~~tL~~~gi~~~ 64 (145)
|+|+|+.++|++++|+|++++||.+||++|++.+++|++ +|+|+|+|+.|. |+.+|++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999884 569999999996 6799999999999
Q ss_pred CEEEEEEEecCC
Q 032224 65 STLHLVLRLRGG 76 (145)
Q Consensus 65 sti~l~~~~~gg 76 (145)
++|+++.+++|.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999999875
No 53
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=120.01 Aligned_cols=74 Identities=32% Similarity=0.446 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~g 75 (145)
|+|+|+.. |+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|++++.+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 889999999999999999999999999999999999999999999999999999999999987654
No 54
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.5e-19 Score=122.11 Aligned_cols=77 Identities=35% Similarity=0.471 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|+|+..+|+ +.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++.||..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAM 94 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCC
Confidence 78999998875 789999999999999999999999999999999999999999999999999999999999988864
No 55
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.80 E-value=2e-19 Score=123.38 Aligned_cols=73 Identities=30% Similarity=0.450 Sum_probs=70.2
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccC-------CCEEEEEEE
Q 032224 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~-------~sti~l~~~ 72 (145)
|.|||+...++ ++.+++.+++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++ +++|+|+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 88999988777 7899999999999999999999999999999999999999999999999999 999999999
Q ss_pred e
Q 032224 73 L 73 (145)
Q Consensus 73 ~ 73 (145)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=1.1e-19 Score=122.03 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=72.8
Q ss_pred CEEEEEeCCC----CEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCC-CccccccccCCCEEEEEEEecC
Q 032224 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (145)
Q Consensus 1 M~I~Vk~~~g----~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~-~tL~~~gi~~~sti~l~~~~~g 75 (145)
|+|+|+..++ +++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|+++++|+|+.+.+|
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899999754 6999999999999999999999999999999999999999887 6999999999999999999988
Q ss_pred Ccc
Q 032224 76 GAK 78 (145)
Q Consensus 76 g~~ 78 (145)
|.-
T Consensus 88 g~~ 90 (102)
T 1v5o_A 88 GLR 90 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 864
No 57
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.6e-19 Score=120.84 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=67.7
Q ss_pred EEEEeCC----CCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 3 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 3 I~Vk~~~----g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|.|+..+ ++.+.++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++| ++++++|..
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 5666666 6789999999999999999999999999999999999999999999999999999999 777777754
No 58
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.6e-19 Score=122.10 Aligned_cols=76 Identities=28% Similarity=0.492 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|+++...+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875443
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=130.59 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999997
No 60
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=4.5e-19 Score=121.78 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHH------HhCC--CcCceeeeeCCeeccCCCccccccccCC--CEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~------~~gi--p~~~q~L~~~G~~L~d~~tL~~~gi~~~--sti~l~ 70 (145)
|+|+|++++|++++|+|++++||.+||++|++ .+++ |+++|+|+|+|++|+|+.+|++|+|..+ ++|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 5575 6999999999999999999999999766 568888
Q ss_pred EEecCCc
Q 032224 71 LRLRGGA 77 (145)
Q Consensus 71 ~~~~gg~ 77 (145)
+++.+..
T Consensus 97 lr~~~~~ 103 (116)
T 1wgh_A 97 ARETLPE 103 (116)
T ss_dssp ECSSCSS
T ss_pred ccCCCCC
Confidence 8776554
No 61
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=129.13 Aligned_cols=77 Identities=95% Similarity=1.302 Sum_probs=74.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++.||.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998875
No 62
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.79 E-value=7.3e-19 Score=124.57 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++||
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999997
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.77 E-value=1.6e-18 Score=124.31 Aligned_cols=76 Identities=32% Similarity=0.399 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeee-e-CCeeccCCCccccccccCCCEEEEEEE-ecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~-~-~G~~L~d~~tL~~~gi~~~sti~l~~~-~~gg 76 (145)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++++ +.++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 79999999999999999999999999999999999999999999 9 799999999999999999999999998 3554
No 64
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.77 E-value=2.3e-18 Score=122.00 Aligned_cols=77 Identities=95% Similarity=1.302 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++.+..++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~ 77 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999887763
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.77 E-value=3.1e-18 Score=115.53 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=67.5
Q ss_pred CEEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccc-cCCCEEEEEEE
Q 032224 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g--~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi-~~~sti~l~~~ 72 (145)
|+|+|+...+ .+++++|+|++||++||++|++.+|||++.|||+|+|+.++|+.+|++||| ++|++++|++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999875 589999999999999999999999999999999999999999999999999 69999999874
No 66
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=116.24 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=64.2
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHHH-hCCC-cCceeeeeCCeeccCCCccccc--cccCCCEEEEE
Q 032224 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~--~~~l~V~~~~TV~~LK~~I~~~-~gip-~~~q~L~~~G~~L~d~~tL~~~--gi~~~sti~l~ 70 (145)
|+|+|++++|+ ++.|+|++++||.+||++|++. .|+| +++|+|+|+|+.|+|+.+|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999888 6789999999999999999986 5666 4999999999999999999999 99999999974
No 67
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6e-19 Score=118.44 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=66.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|++ +|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4678886 8889999999999999999999999999999999999999999999999999999999999754
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=4.9e-18 Score=110.51 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.4
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEE
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
++++.++|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4566778999999999999999999999999999999999999999999999999999999999998753
No 69
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.74 E-value=3.9e-18 Score=112.04 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEEEE-EEcCCCcHHHHHHHHHHHhCCCcCceeee---eCCeeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l-~V~~~~TV~~LK~~I~~~~gip~~~q~L~---~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|+. .|+++.| +|++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 7899996 7889999 99999999999999999999999999999 9999999999999999999999998754
No 70
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=4.8e-18 Score=113.04 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~-~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|+. .|+++ .|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|+++++|+|+..
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 6899995 68899 6999999999999999999999999999999999999999 999999999999998754
No 71
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=7.1e-18 Score=111.58 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCC-CccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~-~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|+..+|+.+.++|++++||.+||++|++.+ +++|+|+|+|+.|+|+ .+|++|+|.+|++|+|+++..+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999999987 8999999999999999 99999999999999999876544
No 72
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=9.9e-18 Score=113.46 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.2
Q ss_pred CEEEEEeCCC---CEEEEEEcC---------CCcHHHHHHHHHHHh--CCCcCc-eeeeeCCeeccCCCccccccccCCC
Q 032224 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (145)
Q Consensus 1 M~I~Vk~~~g---~~~~l~V~~---------~~TV~~LK~~I~~~~--gip~~~-q~L~~~G~~L~d~~tL~~~gi~~~s 65 (145)
|+|+|+..++ +.+.|+|++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|+|++++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999988 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEEEec
Q 032224 66 TLHLVLRLR 74 (145)
Q Consensus 66 ti~l~~~~~ 74 (145)
+|+|+++..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999988653
No 73
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=99.71 E-value=5.7e-19 Score=105.85 Aligned_cols=43 Identities=37% Similarity=0.797 Sum_probs=40.5
Q ss_pred eeeeeeEEEcCCCcEEEecccCCCCCCCccEEeceeCCcccccCCC
Q 032224 100 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMASHFDRHYCEFVP 145 (145)
Q Consensus 100 ~~v~k~~~v~~~~~~~~l~~~c~~~~c~~g~~ma~h~~~~~c~~~~ 145 (145)
+++|+||+||+ |+|+|++++|| +||+|+|||.|+||++||+|.
T Consensus 1 m~~~~~y~v~~-gki~~~~~fCP--kCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 1 MQKRELYEIAD-GKLVRKHRFCP--RCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp CCCCCCCCCCC-CCCCCSSCCCT--TTTTTCCCEECSSEEECTTTC
T ss_pred CceEEEEEEcC-CEEEEccccCc--CCCCceeEeccCCEEECCCCC
Confidence 46899999996 99999999999 899999999999999999984
No 74
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=112.04 Aligned_cols=74 Identities=16% Similarity=0.305 Sum_probs=67.7
Q ss_pred EEEEE-eCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecC
Q 032224 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (145)
Q Consensus 2 ~I~Vk-~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~g 75 (145)
.|.|+ ..+++.+.++++++.||.+||+.++...++|++.|+|+|+|+.|.|+.+|++|||++|.||||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45555 456789999999999999999999999999999999999999999999999999999999999998643
No 75
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.6e-17 Score=107.55 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=65.5
Q ss_pred CEEEEEeCCCCEEEEEEcCC-----CcHHHHHHHHHHHhCCCcCceeeeeCCeeccC-CCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~-----~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d-~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|+. .|+.+.++|+++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+|+.+
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 6899998 588999999995 99999999999999999999999999999988 66899999999999998764
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.3e-17 Score=110.58 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=64.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|+|+|+. .++++.++|++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|+|+++++|+|+.+
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 5788884 6889999999999999999999999999999999999999995 45999999999999998753
No 77
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.70 E-value=4.7e-17 Score=128.20 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEec
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~ 74 (145)
|+|+|+.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998864
No 78
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.70 E-value=3.7e-18 Score=100.43 Aligned_cols=40 Identities=45% Similarity=0.841 Sum_probs=38.5
Q ss_pred eeeeEEEcCCCcEEEecccCCCCCCCccEEeceeCCcccccCC
Q 032224 102 VLQFYKVDDSGKVQRLRKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 102 v~k~~~v~~~~~~~~l~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
+|+||+|| +|+|+|++++|| +||+|+|||.|.+|++||+|
T Consensus 4 ~l~~y~v~-~~kv~~~~k~CP--~CG~~~fm~~~~~R~~C~kC 43 (50)
T 3j20_Y 4 KWKLYEIK-DGKVIRKNKFCP--RCGPGVFMADHGDRWACGKC 43 (50)
T ss_dssp CCCCCEEC-SSCEECSSEECS--SSCSSCEEEECSSEEECSSS
T ss_pred ceeEEEEE-CCEEEEecccCC--CCCCceEEecCCCeEECCCC
Confidence 68999999 899999999999 89999999999999999997
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=108.05 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.2
Q ss_pred CEEEEEeCCCCEE--EE-EEcCCCcHHHHHHHHHHH-hCCCcCceeeeeC--CeeccCCCccccccccCCCEEEE
Q 032224 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (145)
Q Consensus 1 M~I~Vk~~~g~~~--~l-~V~~~~TV~~LK~~I~~~-~gip~~~q~L~~~--G~~L~d~~tL~~~gi~~~sti~l 69 (145)
|+|+|+++.|+.+ .+ +|++++||.+||++|++. .++||++|+|+|. |+.|+|+.+|++|+|.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988764 58 999999999999999995 8999999999976 99999999999999999999875
No 80
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=110.15 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeee--CCeeccCCCccccccccCCCEEEEEEEecC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~--~G~~L~d~~tL~~~gi~~~sti~l~~~~~g 75 (145)
|++++..++|+++.|+|++++||.+||++|++.+||||++|+|++ .|+ |+|+.+|++|+|++|++|+|++....
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 677888889999999999999999999999999999999999986 555 99999999999999999999877544
No 81
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.69 E-value=8.7e-17 Score=106.79 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=62.3
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeC--Ce---ec-cCCCccccccccCCCEEEEE
Q 032224 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~--~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~--G~---~L-~d~~tL~~~gi~~~sti~l~ 70 (145)
+.|+|+...++ .++++|++++||++||++|+..+|||+++|+|+|. |+ .| +|+.+|++|+|++|++|+|+
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 36788876654 78999999999999999999999999999999997 44 44 89999999999999999986
No 82
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.66 E-value=1.2e-16 Score=104.24 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=62.2
Q ss_pred EEEEEeC--CCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeee-------CCeeccCCCccccccccCCCEEEEEEE
Q 032224 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 2 ~I~Vk~~--~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~-------~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
.|.|... +.+.+++.+++++||++||++|+..+|+||++|+|+| .|+.|+|+.+|++|+|++|++|||+-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4555543 3457889999999999999999999999999999996 478899999999999999999999864
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.2e-16 Score=103.29 Aligned_cols=77 Identities=17% Similarity=0.398 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|+++|+|+|+|+.|+++.|+++|+++++++|++++++.||.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999985
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=4.2e-16 Score=103.83 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=61.6
Q ss_pred EEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCC---ee----ccCCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g--~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G---~~----L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.|+|..... ..++++|++++||++||++|+..+||||++|+|+|.| +. ++|+.+|++|+|++|++|+|+-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 567776544 4789999999999999999999999999999999987 33 4899999999999999999874
No 85
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.64 E-value=2.9e-16 Score=126.57 Aligned_cols=78 Identities=31% Similarity=0.562 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHH---HhCCCcCceeeeeCCeeccCCCccccccccCCCEE-EEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~---~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti-~l~~~~~gg 76 (145)
|+|+|++++|+++.|+|++++||.+||++|+. .+|||+++|+|+|+|+.|+|+.+|++|+|+++++| +++.++.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999 56799999999999999999999999999999998 677777776
Q ss_pred cc
Q 032224 77 AK 78 (145)
Q Consensus 77 ~~ 78 (145)
..
T Consensus 88 ~~ 89 (368)
T 1oqy_A 88 QG 89 (368)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 86
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=3.4e-16 Score=105.92 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=65.1
Q ss_pred CEEEEEeCCCCEEEEEEc-CCCcHHHHHHHHHHHhCCCcCceeeeeCCe-----------e----ccCCCccccccccCC
Q 032224 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~-~~~TV~~LK~~I~~~~gip~~~q~L~~~G~-----------~----L~d~~tL~~~gi~~~ 64 (145)
|+|+|++.+|+. .|+|+ +++||.+||++|++.+++|+++|+|++.|+ . ++|+.+|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999865 78999 999999999999999999999999999887 4 588999999999999
Q ss_pred CEEEEEEE
Q 032224 65 STLHLVLR 72 (145)
Q Consensus 65 sti~l~~~ 72 (145)
++|||...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998754
No 87
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=1.2e-15 Score=101.06 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.6
Q ss_pred EEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCC---ee----ccCCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G---~~----L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.|+|+..... .+++++++++||++||++|+..+|+|+++|+|+|.| +. ++|+.+|++|||++|++|||+.
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5777776443 688999999999999999999999999999999986 43 5899999999999999999864
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=3.3e-15 Score=98.40 Aligned_cols=77 Identities=17% Similarity=0.398 Sum_probs=74.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|+|+++++|+|+|+.|.++.|.+++++.+|++|++++.+.||.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 57889998999999999999999999999999999999999999999999999999999999999999999999986
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.59 E-value=4.9e-15 Score=102.41 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=62.2
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCC---e---e-ccCCCccccccccCCCEEEEEE
Q 032224 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G---~---~-L~d~~tL~~~gi~~~sti~l~~ 71 (145)
|.|+|+...+. .+++++++++||++||++|+..+|||+++|+|+|.| + . ++|+.+|++|||++|++|||+.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 35778776543 688999999999999999999999999999999977 3 2 4899999999999999999886
No 90
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.58 E-value=8.3e-15 Score=96.80 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++++.+.||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 5788888899999999999999999999999999999999999999999999999999999999999999999887
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.57 E-value=3.2e-15 Score=97.19 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=62.5
Q ss_pred CEEEEEeCCCCEEEEE-EcCCCcHHHHHHHHHHHhCCCcCceeeeeC--Ceecc---CCCccccccccCCCEEEEEE
Q 032224 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~-V~~~~TV~~LK~~I~~~~gip~~~q~L~~~--G~~L~---d~~tL~~~gi~~~sti~l~~ 71 (145)
|+|+|++.+|+. .++ +++++||++||+.|++.+|+|+++|+|+|+ ++.|+ |+.+|++|||.+|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999965 477 999999999999999999999999999986 47774 67899999999999998763
No 92
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.3e-14 Score=97.69 Aligned_cols=78 Identities=15% Similarity=0.368 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|.|+..+|+.+.+.|.+++++..|+..++++.|++++.++|+|+|+.|.++.|+++|++.++++|++++.+.||..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCSS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCC
Confidence 578999889999999999999999999999999999999999999999999999999999999999999999999863
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.53 E-value=4.6e-14 Score=88.88 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~ 70 (145)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|+++++|+|+|+.|.++.|.+++++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999986
No 94
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.53 E-value=1.8e-14 Score=114.25 Aligned_cols=73 Identities=22% Similarity=0.440 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeee---eCCeeccCCCccccccccCCCEEEEEEEec
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~---~~G~~L~d~~tL~~~gi~~~sti~l~~~~~ 74 (145)
|.|+|+. +|+++.++|++++||++||++|++.+||||++|+|+ |+|+.|+|+.+|++|+|++|++|+|+....
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 4688885 789999999999999999999999999999999999 899999999999999999999999885543
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.52 E-value=4e-14 Score=95.62 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|.|+. +|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.++.|.++|++.++++|++++.+.||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 5788898 89999999999999999999999999999999999999999999999999999999999999999887
No 96
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.51 E-value=2.1e-14 Score=97.63 Aligned_cols=77 Identities=16% Similarity=0.410 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|+++++++|+|+|+.|.++.|+++|++.++++|++++.+.||-
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999985
No 97
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.47 E-value=2.8e-13 Score=86.78 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.9
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEE
Q 032224 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~ 70 (145)
|+|.|++.+|+ .+.+.|.+++++..|++.++++.|+++++++|+|+|+.|.++.|.+++++.+|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999985
No 98
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=1.4e-12 Score=86.41 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=60.9
Q ss_pred EEEEEe---CCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCC-------eec-cCCCccccccccCCCEEEEE
Q 032224 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 2 ~I~Vk~---~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G-------~~L-~d~~tL~~~gi~~~sti~l~ 70 (145)
.|+|+. .+++.+.+.+++++||++||.+|+..+|+|+..|+|.|.+ ..| +|+.+|++|+|.+|++|+|.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466665 3677899999999999999999999999999999999863 235 57789999999999999987
Q ss_pred EE
Q 032224 71 LR 72 (145)
Q Consensus 71 ~~ 72 (145)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 63
No 99
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=4.3e-11 Score=81.66 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~g 75 (145)
++|.|+..+|..+.+.|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++.+|++|++.+...|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 467888888999999999999999999999999999999999999999999999999999999999999886543
No 100
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1e-10 Score=86.88 Aligned_cols=77 Identities=13% Similarity=0.311 Sum_probs=71.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
++|.|+ .+|....+.|.+++++..|+...+++.|+++++++++|+|+.|.++.|.+++++.+|++|++++.+.||.+
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence 367786 48889999999999999999999999999999999999999999999999999999999999999999874
No 101
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.1e-10 Score=85.81 Aligned_cols=77 Identities=12% Similarity=0.285 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
++|.|+ .+|..+.+.|.+++++..|+...+++.|+++..++++|+|+.|.++.|..++++.+|++|++++...||.-
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~~ 134 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLP 134 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTGG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 357776 47889999999999999999999999999999999999999999999999999999999999999999974
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.06 E-value=1.6e-09 Score=68.48 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcC-ceeeeeCCeeccCCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.+.+++.....+.+.|.++++|.+|-.....+.|||++ .++|.|.|..|+.+.++.+|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45667766678999999999999999999999999998 89999999999999999999999999999875
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.00 E-value=2.9e-10 Score=72.82 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=57.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCee---c--cCCCccccccccCCCEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~---L--~d~~tL~~~gi~~~sti~l~ 70 (145)
|.|.||+.+| ++.|++++++|+.+|+++|++.++++++.|.|.++-.+ | .++.+|+++||++|++|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 5688888876 77788999999999999999999999888777654443 3 47789999999999999874
No 104
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.93 E-value=1.2e-10 Score=86.82 Aligned_cols=77 Identities=13% Similarity=0.314 Sum_probs=1.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
|+|.| ..+|....+.|.+++++..|++..+++.|++++.++++|+|+.+.++.|.+++++++|++|++++...||..
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~ 98 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT 98 (227)
T ss_dssp ---------------------------------------------------------------------------CCC
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence 56777 668888999999999999999999999999999999999999999999999999999999999999999863
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.76 E-value=5.1e-08 Score=64.53 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=64.1
Q ss_pred EEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEE
Q 032224 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 2 ~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~ 70 (145)
.|.|+..+|. .+.+.|..++++..|....+++.|++++..+++|+|..|.++.|..++++.+|++|.+.
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 5777777884 88999999999999999999999999999999999999999999999999999999875
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.59 E-value=1.3e-07 Score=70.52 Aligned_cols=76 Identities=13% Similarity=0.329 Sum_probs=70.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
.|.|+. +++...+.+..++++..|++..+++.|+++++++++|+|+.+.++.+..++.+.++++|.+.....||..
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~t 98 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGST 98 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCCC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccccc
Confidence 466665 6778899999999999999999999999999999999999999999999999999999999999988753
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.54 E-value=9.2e-09 Score=82.35 Aligned_cols=76 Identities=13% Similarity=0.333 Sum_probs=1.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
+|.|+. +|....+.|..++++..|++..+++.|++++.++++|+|+.|.++.|.+++++++|++|+++....||.+
T Consensus 23 ~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR 98 (360)
T ss_dssp ---------------------------------------------------------------------------CH
T ss_pred EEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence 566665 5678889999999999999999999999999999999999999999999999999999999999999976
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.50 E-value=5.6e-07 Score=59.06 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=44.8
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeec--cCCCccccccc
Q 032224 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI 61 (145)
Q Consensus 9 ~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L--~d~~tL~~~gi 61 (145)
.+..+.+.+.+++||..||++|++.+|||+++|+|+|.|+.| +.+..-..|.-
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 466789999999999999999999999999999999999765 45555555543
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.46 E-value=1.3e-06 Score=57.19 Aligned_cols=69 Identities=14% Similarity=0.306 Sum_probs=64.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.|.|+. +|....+.+-.++.+..|....+++.|+++++.+++|+|..+.++.|-.++++.++++|.+++
T Consensus 23 niKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 23 PLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 567774 678899999999999999999999999999999999999999999999999999999999875
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.35 E-value=2.1e-06 Score=55.70 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=66.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
|.|+|-..+++...+.|.|++|+.++-++..+++|+++++-.|.|+++.|+-+..+.-.||.+++.|.++.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 57889889999999999999999999999999999999999999999999999999999999999999874
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.34 E-value=1.5e-06 Score=60.14 Aligned_cols=69 Identities=28% Similarity=0.402 Sum_probs=57.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcC-------------------------------------ceeee
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 44 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-------------------------------------~q~L~ 44 (145)
.|.|+.++|+..++.|+.+.||++++..|....||+.. .++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999999854 33432
Q ss_pred e--CCeeccCCCccccccccCCCEEEEE
Q 032224 45 F--AGKQLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 45 ~--~G~~L~d~~tL~~~gi~~~sti~l~ 70 (145)
. .+..|+++.+|.++||.++++|.|-
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 2 2256788999999999999997654
No 112
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.29 E-value=9e-08 Score=77.29 Aligned_cols=76 Identities=12% Similarity=0.319 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCcc
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~ 78 (145)
.|.|+. ++....+.|..++++..|+...+++.|+++.+++++|+|+.|.++.|.+++++.+|++|.+++...||..
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 455555 5677889999999999999999999999999999999999999999999999999999999999999874
No 113
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.26 E-value=4.3e-06 Score=53.37 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=58.3
Q ss_pred EEEEEe--CCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcC-----ceeeeeCCeeccCCCccccccccCCCEEEE
Q 032224 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (145)
Q Consensus 2 ~I~Vk~--~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-----~q~L~~~G~~L~d~~tL~~~gi~~~sti~l 69 (145)
.|+|.. ..++++.++++...||..|.+.+.+.++++.. .+++.-.+..|.++..|++|+|.+|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566654 47889999999999999999999999987652 356778888999999999999999999875
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.09 E-value=2.4e-05 Score=49.92 Aligned_cols=68 Identities=19% Similarity=0.383 Sum_probs=57.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeee--eCCeec---cCCCccccccccCCCEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~--~~G~~L---~d~~tL~~~gi~~~sti~l~ 70 (145)
.|.||.++|+.+.-.+..++||.+|.+.|.. .+.++....|+ |-.+.| +.+.+|.++|+.+.++|.|.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999988899999999999999988 56777778887 556777 35689999999999998775
No 115
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.79 E-value=0.00019 Score=48.02 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=57.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeee--eCCeecc---CCCccccccccCCCEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~--~~G~~L~---d~~tL~~~gi~~~sti~l~ 70 (145)
.|.||.++|..+.-.+..++||.+|.+-|....+.+.....|+ |-.+.|. .+.+|.++|+.+.++|.+.
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 5889999999999999999999999999999877776667776 5566675 3689999999988777654
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.67 E-value=0.0002 Score=49.08 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=57.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeee--eCCeec--c-CCCccccccccCCCEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~--~~G~~L--~-d~~tL~~~gi~~~sti~l~ 70 (145)
.|.||.++|..+.-.+..++||.+|.+.|... +.++....|+ |-.+.| + .+.+|.++|+.+.++|.|.
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 58899999999999999999999999999886 7777777777 567778 3 4789999999988887765
No 117
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.30 E-value=0.0012 Score=44.09 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=56.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeee--eCCeecc--CCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~--~~G~~L~--d~~tL~~~gi~~~sti~l~~ 71 (145)
+|.||.++|+.+.-.+..++||.+|.+-|... +..+....|+ |-.+.|. .+.+|.++||.+.++|.|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 58899999999888999999999999999865 5555667776 5566775 46899999999988887653
No 118
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.18 E-value=0.0013 Score=45.07 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=53.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHh-CCCcCceeee--eCCeeccC-CCccccccccCCCEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~-gip~~~q~L~--~~G~~L~d-~~tL~~~gi~~~sti 67 (145)
.|.||..+|..+.-.+..++||.+|.+.|.... +.+.....|+ |-.+.|+| +.+|.++|+.+...|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 588999999999999999999999999998863 3445566676 66778864 699999999875443
No 119
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.05 E-value=0.0015 Score=40.62 Aligned_cols=66 Identities=15% Similarity=0.357 Sum_probs=50.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+|+..+.....+++++..||++|-+. .|+|++..-+..||+.+..+.. .+|++|.++ +.-||+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv-~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVL-RLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS------SCCCCEEEC-SSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHC------CCCCEEEEE-Eeeccc
Confidence 89999987555667899999999998764 6899988877789998865552 248888765 344443
No 120
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.05 E-value=0.0061 Score=37.24 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=48.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+|.... ....++++...||.+|.+.+ ++++....+..||..+..+. -+++|+.|.++-...||
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 667776532 24567888889999999876 56677777779999887655 56789999877554444
No 121
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79 E-value=0.0024 Score=40.73 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=53.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeee---CCeeccCCCccccccccC
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 63 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~---~G~~L~d~~tL~~~gi~~ 63 (145)
++.|.....+...+.|+|..++++|--.|.++..+.|+...|.- .+..|+-+.+|.||||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 45666666677889999999999999999999999999888874 456889999999999986
No 122
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.78 E-value=0.0044 Score=46.06 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=53.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHhCCCcC-ceeee--e-CC--eeccC-CCccccccccCCCEEEEEEEecCC
Q 032224 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~-~q~L~--~-~G--~~L~d-~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
.+++.++..+|+.+|++.+...++|+++ ..||. + .+ ..|+| +.+|.+++|.++..|.|-++...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567889999999999999999999997 68887 2 22 35665 579999999999999999886655
No 123
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=96.71 E-value=0.0006 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.700 Sum_probs=20.9
Q ss_pred ecccCCCCCCCccEEeceeCCcccccCC
Q 032224 117 LRKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 117 l~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
....|| +||.++| |.++++||+|
T Consensus 15 tH~lCr--RCG~~sf---H~qK~~CgkC 37 (97)
T 2zkr_2 15 THTLCR--RCGSKAY---HLQKSTCGKC 37 (97)
T ss_dssp CEECCT--TTCSSCE---ETTSCCBTTT
T ss_pred CCCcCC--CCCCccC---cCccccCccc
Confidence 567899 9999998 9999999987
No 124
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.60 E-value=0.011 Score=44.26 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=53.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCcC-ceeeee-CC----eeccC-CCccccccccCCCEEEEEEEecCC
Q 032224 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~-~q~L~~-~G----~~L~d-~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
+++.++..+|+.+|++.+...++|+++ ..||.. .+ ..|.| +.+|.+++|.++..|.+-++...|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 557789999999999999999999997 688873 32 35665 589999999999999999886655
No 125
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.48 E-value=0.02 Score=37.11 Aligned_cols=71 Identities=13% Similarity=0.298 Sum_probs=47.7
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCcHHHHHHHHHHHhC-C----------CcCceeeeeCCeeccCCCcccccccc
Q 032224 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (145)
Q Consensus 1 M~I~Vk~~~------g-~~~~l~V~~~~TV~~LK~~I~~~~g-i----------p~~~q~L~~~G~~L~d~~tL~~~gi~ 62 (145)
|+|.|+... | ....+++++..||.+|.+.+..... + ......+..||+.... +.-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 677887664 4 4677888888999999999987641 1 0133456678877653 45678
Q ss_pred CCCEEEEEEEecCC
Q 032224 63 KESTLHLVLRLRGG 76 (145)
Q Consensus 63 ~~sti~l~~~~~gg 76 (145)
+|+.|.++....||
T Consensus 85 dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 85 DGDVVGVFPPVSGG 98 (98)
T ss_dssp TTCEEEEESCC---
T ss_pred CCCEEEEECCCCCC
Confidence 89999887655554
No 126
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.44 E-value=0.023 Score=38.01 Aligned_cols=62 Identities=39% Similarity=0.513 Sum_probs=44.2
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHHHh--CCC------cCceeeee----CCeeccCC-------------CccccccccCC
Q 032224 10 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE 64 (145)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~--gip------~~~q~L~~----~G~~L~d~-------------~tL~~~gi~~~ 64 (145)
+..+.+.|-..+||.++|++|-... |.| ++++.|-+ .|++|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 3467888889999999999997654 444 34555654 34566542 37999999999
Q ss_pred CEEEEEE
Q 032224 65 STLHLVL 71 (145)
Q Consensus 65 sti~l~~ 71 (145)
++|.++.
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 127
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.37 E-value=0.01 Score=38.07 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=42.2
Q ss_pred CCCEEEEEEcCC-CcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 9 ~g~~~~l~V~~~-~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
+|+. ++++.. .||.+|.+.+ ++++....+..||..+..+ ...+.-|++|+.|.++-...||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 4543 455666 8999999876 5667777777999987543 2334567899999987655554
No 128
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.36 E-value=0.014 Score=35.89 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=47.7
Q ss_pred CEEEEEeCCC-CEEEEEEcCCCcHHHHHHHHHHHhCCCc--CceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g-~~~~l~V~~~~TV~~LK~~I~~~~gip~--~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|.|+|+.+.. +...+++ ...||.+|.+.+....++.. ....+..||+...+ .+.-+++|++|.+.....||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 7889987743 1134666 56899999999986533321 34556678877432 24457789999988766665
No 129
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=96.03 E-value=0.039 Score=35.04 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=54.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEec
Q 032224 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (145)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~ 74 (145)
+.-.++-..++..||+.++.+.+++-+.-.+...+..|+++.+|.+-+++-...+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 34456778899999999999999999988888888889999999999999888888887754
No 130
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.01 E-value=0.046 Score=43.30 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=57.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhC----CCcCceeeee------CCeeccCCCccccccccCCCEEEEE-
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLV- 70 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~g----ip~~~q~L~~------~G~~L~d~~tL~~~gi~~~sti~l~- 70 (145)
.+.|... +.+-++.+++++||.|.-..|.++.. .+.++--|+. .|.-|++..+|+.|++++++.|...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3555554 66788999999999999999987764 3556666665 3456888889999999999987665
Q ss_pred ------EEecCCcc
Q 032224 71 ------LRLRGGAK 78 (145)
Q Consensus 71 ------~~~~gg~~ 78 (145)
+.+.+|..
T Consensus 84 ~~~~~~V~l~dg~~ 97 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV 97 (371)
T ss_dssp CEEEEEEECTTSCE
T ss_pred ceeEEEEECcCCCE
Confidence 55666654
No 131
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.89 E-value=0.023 Score=36.04 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=38.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCe
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~ 48 (145)
.|.|... -++.|+|++..+..+|.++|.++.++|++...|.|...
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4555443 68999999999999999999999999999999999663
No 132
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=95.88 E-value=0.0084 Score=37.56 Aligned_cols=67 Identities=16% Similarity=0.343 Sum_probs=48.2
Q ss_pred CEEEEEeCCCCEEEEEEc--CCCcHHHHHHHHHHHhCCC-cCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~--~~~TV~~LK~~I~~~~gip-~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+| +|+.+ +++ ...||.+|-+.+ +++ +...-+..||..+..+ ...+.-+++|+.|.++--..||.
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 67766 46654 455 678999998764 677 7777788999988654 24556678899999876666665
No 133
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=95.74 E-value=0.077 Score=33.39 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=43.7
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhC-CC----------cCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEG-IP----------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~g-ip----------~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
....++++...||.+|.+.+..... +. .....+..||+.... +.-+++|+.|.+.....||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5678888888999999999987652 10 012466678887765 3456789999988766665
No 134
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.73 E-value=0.098 Score=35.71 Aligned_cols=64 Identities=27% Similarity=0.387 Sum_probs=46.6
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHHHh--CCCc------Cceeeee----CCe-eccCC-------------Ccccccccc
Q 032224 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQ 62 (145)
Q Consensus 9 ~g~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~q~L~~----~G~-~L~d~-------------~tL~~~gi~ 62 (145)
++..+.+.|-..+||.++|++|-+.. ++|. +++.|-+ .|+ +|.|. .||..|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888889999999999997664 4543 4566665 233 36542 379999999
Q ss_pred CCCEEEEEEE
Q 032224 63 KESTLHLVLR 72 (145)
Q Consensus 63 ~~sti~l~~~ 72 (145)
+|++|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988744
No 135
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=95.68 E-value=0.056 Score=34.37 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=47.3
Q ss_pred CEEEEEeCC------CCEEEEEEcCCCcHHHHHHHHHHHhCC------C-------cCceeeeeCCeeccCCCccccccc
Q 032224 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (145)
Q Consensus 1 M~I~Vk~~~------g~~~~l~V~~~~TV~~LK~~I~~~~gi------p-------~~~q~L~~~G~~L~d~~tL~~~gi 61 (145)
|+|+|+.+. |....+++ +..||.+|.+.+.....- . .....+..||+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 778887653 33334664 458999999999877520 0 0124566788776542222 4567
Q ss_pred cCCCEEEEEEEecCC
Q 032224 62 QKESTLHLVLRLRGG 76 (145)
Q Consensus 62 ~~~sti~l~~~~~gg 76 (145)
++|++|.++....||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 899999988777765
No 136
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=95.62 E-value=0.017 Score=34.67 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=44.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
|+|+| +|+.+ +++...||.+|.+.+ ++++....+..||..+..+ ...+.-+++|+.|.++-...||
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 55655 46644 556778999999876 5667777777899887532 1223456789999877554444
No 137
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.59 E-value=0.071 Score=36.90 Aligned_cols=62 Identities=31% Similarity=0.474 Sum_probs=46.1
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHh--CCCc------Cceeeee----CCe-eccCC-------------CccccccccCC
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~q~L~~----~G~-~L~d~-------------~tL~~~gi~~~ 64 (145)
..+++.|-..+||.++|++|-+.. |+|- +++-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 458889999999999999998765 4543 4455544 343 46543 27999999999
Q ss_pred CEEEEEEE
Q 032224 65 STLHLVLR 72 (145)
Q Consensus 65 sti~l~~~ 72 (145)
++|.++.+
T Consensus 121 a~l~l~~~ 128 (138)
T 2r2o_A 121 ATVALVPC 128 (138)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 99988754
No 138
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.49 E-value=0.016 Score=35.72 Aligned_cols=66 Identities=9% Similarity=0.198 Sum_probs=46.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
|+|+| +|+.+.+ +..||.+|-+. .++++...-+..||..+..+ ...+.-+++|+.|.++--..||.
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCc
Confidence 66666 4665544 56899999775 57888888888999987532 23455677899999876555554
No 139
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.83 E-value=0.12 Score=34.85 Aligned_cols=62 Identities=32% Similarity=0.503 Sum_probs=44.5
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHh--CCCc------Cceeeee-CC---e-eccCC-------------CccccccccCC
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 64 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~q~L~~-~G---~-~L~d~-------------~tL~~~gi~~~ 64 (145)
..+.+.|-..+||.++|++|-+.. +.|. +++.|-+ .| + .|.|. .||+.|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347788889999999999997654 5553 3555554 22 3 35442 37999999999
Q ss_pred CEEEEEEE
Q 032224 65 STLHLVLR 72 (145)
Q Consensus 65 sti~l~~~ 72 (145)
++|.++.+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988754
No 140
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=94.47 E-value=0.13 Score=34.29 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=45.8
Q ss_pred CEEEEEeCC------C--CEEEEEEcC---CCcHHHHHHHHHHHhCCCcCceeeee-CCe------eccCCC---cc--c
Q 032224 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL--A 57 (145)
Q Consensus 1 M~I~Vk~~~------g--~~~~l~V~~---~~TV~~LK~~I~~~~gip~~~q~L~~-~G~------~L~d~~---tL--~ 57 (145)
|+|.|+.+. | +.+.++++. ..||.+|-+.|.+.+ |....+|+. +|. .|-++. .| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 577887664 3 256788883 369999999998776 222222221 121 121222 11 2
Q ss_pred cccccCCCEEEEEEEecCCc
Q 032224 58 DYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 58 ~~gi~~~sti~l~~~~~gg~ 77 (145)
++-+++|+.|.++....||.
T Consensus 90 dt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TCBCCSSEEEEEEECSCCCC
T ss_pred CcCCCCCCEEEEeCCCCCCC
Confidence 46788999999887777874
No 141
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.33 E-value=0.059 Score=36.94 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCcCceeeee
Q 032224 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (145)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~ 45 (145)
..+.|..++|+.+|+..|++..|+|++.|+|..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999984
No 142
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=94.23 E-value=0.41 Score=30.75 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=44.1
Q ss_pred CEEEEEeCC-------C-CEEEEEEc--CCCcHHHHHHHHHHHhCCCcCc-------------eeeeeCCeeccCCCcc-
Q 032224 1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRTL- 56 (145)
Q Consensus 1 M~I~Vk~~~-------g-~~~~l~V~--~~~TV~~LK~~I~~~~gip~~~-------------q~L~~~G~~L~d~~tL- 56 (145)
|+|+|+.+. | ....++++ +..||.+|.+.+.++..-.... ..+..||...+ .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccC
Confidence 567776542 3 35667777 6789999999998876311111 11233444211 11
Q ss_pred -ccccccCCCEEEEEEEecCC
Q 032224 57 -ADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 57 -~~~gi~~~sti~l~~~~~gg 76 (145)
.+.-+++|++|.+.....||
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GGGCBCCTTCEEEEEECTTCC
T ss_pred CCCcCcCCCCEEEEECCCCCC
Confidence 24568899999887666555
No 143
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.68 E-value=0.32 Score=31.11 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.5
Q ss_pred EEEEe-CCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCc-eeeeeCCe
Q 032224 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 48 (145)
Q Consensus 3 I~Vk~-~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~~G~ 48 (145)
|.||. .+|..+.+.++++.+..+|.+++.+..+++..+ ..|.|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 34443 367888999999999999999999999987644 67777654
No 144
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=93.60 E-value=0.12 Score=31.52 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=41.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhCCCcCce--eeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q--~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
....++++...||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.++-...||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 3566777788899999999877641 01233 577899887654 456789999876554444
No 145
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.58 E-value=0.14 Score=31.39 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHhC-----CCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 12 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~g-----ip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
...++ ++..||.+|.+.+..... ++.....+..||+.... +.-+++|++|.++....||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45566 567899999999875431 22334567788887754 3456789999887655554
No 146
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.42 E-value=0.19 Score=29.74 Aligned_cols=60 Identities=13% Similarity=0.315 Sum_probs=41.2
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 9 ~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
+|+.+. + +..||.+|.+.+ ++++....+..||..+..+ ...+.-+++|+.|.++....||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 566554 4 568999999877 4666777777899887533 1234457789999887655554
No 147
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=93.16 E-value=0.88 Score=34.88 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=52.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCc-Cceeeee--CCe--eccCCCccccccccCCCEEEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~-~~q~L~~--~G~--~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
.+.|..++| ++.+.+++++|+.+|-+.|....|+.. +-.-|.+ +|. -|+.+..|.+.++..+..+.+.++
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 567888888 788999999999999999999999875 3344444 443 377778888876655555555554
No 148
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=93.07 E-value=0.83 Score=34.60 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=51.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCc-eeeee---CCe--eccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~---~G~--~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|.|.|..++| ++.+.+++++|+.+|-+.|....|+...+ .-|.+ +|. -|+.+..|.+.++..+....+.++
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4678888888 67899999999999999999999987532 34443 333 467777787776655555555554
No 149
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.96 E-value=0.69 Score=31.43 Aligned_cols=60 Identities=35% Similarity=0.557 Sum_probs=41.4
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHH----hCCCc----Cceeeee-CC---eeccC----------C----CccccccccCC
Q 032224 11 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIF-AG---KQLED----------G----RTLADYNIQKE 64 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~----~gip~----~~q~L~~-~G---~~L~d----------~----~tL~~~gi~~~ 64 (145)
..+++.|-..+||.++|++|-.. .++|. +++.|-+ .| ..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788888999999999999543 36654 3444543 12 23322 1 36889999999
Q ss_pred CEEEEE
Q 032224 65 STLHLV 70 (145)
Q Consensus 65 sti~l~ 70 (145)
++|-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999765
No 150
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=92.28 E-value=1.3 Score=28.89 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=53.8
Q ss_pred EEEEEeCCC---CEEEEEEcCCCcHHHHHHHHHHHhCCCcC--ceeeeeCC---eeccCCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g---~~~~l~V~~~~TV~~LK~~I~~~~gip~~--~q~L~~~G---~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.|+|...+. ....++|..+.-|+.+..+|-+...++.+ +--|..-. ..|.-..+|..|||+.++.+++..
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 577777554 45889999999999999999988887653 33444322 257788999999999999998764
No 151
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=92.26 E-value=0.64 Score=29.87 Aligned_cols=72 Identities=14% Similarity=0.291 Sum_probs=43.7
Q ss_pred CEEEEEeCC------CC-EEEEEEcCCCcHHHHHHHHHHHhC-CCc---------Cce-------eeeeCCeeccCCCcc
Q 032224 1 MQIFVKTLT------GK-TITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 56 (145)
Q Consensus 1 M~I~Vk~~~------g~-~~~l~V~~~~TV~~LK~~I~~~~g-ip~---------~~q-------~L~~~G~~L~d~~tL 56 (145)
|+|+|+... |. .+.++ ..||.+|.+.+..... +.. ... .+..||+...... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 678887764 32 44444 5899999999987641 111 012 4567777553221 1
Q ss_pred ccccccCCCEEEEEEEecCC
Q 032224 57 ADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 57 ~~~gi~~~sti~l~~~~~gg 76 (145)
.+.-+++|++|.++....||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23457889999887655554
No 152
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=92.14 E-value=0.078 Score=35.28 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=43.1
Q ss_pred CEEEEEeCC------CCEEEEEEcC----CCcHHHHHHHHHHHhCCCcCceeee-eCC--e------eccCCCcc-----
Q 032224 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL----- 56 (145)
Q Consensus 1 M~I~Vk~~~------g~~~~l~V~~----~~TV~~LK~~I~~~~gip~~~q~L~-~~G--~------~L~d~~tL----- 56 (145)
|+|.|+... |+...++++. ..||.+|-+.|.+.. +..+-.|+ -+| . .|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 556666553 3445677763 259999999998765 22222332 122 1 23222222
Q ss_pred ccccccCCCEEEEEEEecCCc
Q 032224 57 ADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 57 ~~~gi~~~sti~l~~~~~gg~ 77 (145)
.++-+++|++|.++..+.||-
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 246789999988876666663
No 153
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=91.73 E-value=1.2 Score=37.95 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=45.7
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHh--CCC------cCceeeee----CCe-eccCC-------------CccccccccCC
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip------~~~q~L~~----~G~-~L~d~-------------~tL~~~gi~~~ 64 (145)
..+.+.|-..+||.++|++|-+.. |+| ++++.|-+ .|+ +|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 467888889999999999997654 444 34555654 233 45442 37999999999
Q ss_pred CEEEEEEEe
Q 032224 65 STLHLVLRL 73 (145)
Q Consensus 65 sti~l~~~~ 73 (145)
++|.++.+.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999987654
No 154
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=91.58 E-value=0.6 Score=29.01 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=39.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHhC------C-----CcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~g------i-----p~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
.++++...||.+|.+.+..... + ......+..||+...... -.+.-+++|++|.++....||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987641 1 013455667887664221 124457889999887555554
No 155
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=91.36 E-value=1.3 Score=34.88 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=49.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCc-CceeeeeCC---------eeccCCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~-~~q~L~~~G---------~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.+.|..++|....+.+++++|+.+|-+.|....|+.. +..-|.+.. .-|+.+.++.+.+.....++++.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 5778889999999999999999999999999999764 334555421 134455566665554445555433
No 156
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=91.35 E-value=0.042 Score=33.95 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=38.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
.+++++..||.+|.+.+ ++++....+..||+.+..+ .-|++|+.|.++....||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 45667778999998765 4666667777899988765 456788888876554444
No 157
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=90.99 E-value=0.5 Score=30.71 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=40.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHhCCCcC-----------ceeeeeCC-eeccC------CCccccccccCCCEEEEE
Q 032224 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~-----------~q~L~~~G-~~L~d------~~tL~~~gi~~~sti~l~ 70 (145)
...++|++++|+.+|-+.+.+.-.+... ...|+..+ ..|+. +.+|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999885332211 23344333 12322 367999999999998884
No 158
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=90.92 E-value=1 Score=26.67 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=40.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
|+|.|...+|+. ++++...|+.+|-..+....+ ....-...+|+..+-+. -+.+|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~~-----~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLSY-----VLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTTC-----BCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCCc-----CcCCCCEEEEEE
Confidence 788998878876 566788999999888743321 11223346888765543 445678887664
No 159
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.27 E-value=2 Score=36.22 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=52.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCc-CceeeeeC---C--eeccCCCccccccccCCCEEEEEEE
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~-~~q~L~~~---G--~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
|.|.|..++| ++.|.|++++|+.+|-..|....|+.. +..-|.|- | ..|+.+..|.+.++..+..+.+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 3577888888 778999999999999999999999864 33455542 2 2567777787776666666555554
No 160
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=90.23 E-value=1.4 Score=34.44 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=41.1
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCee--ccCCCccccccc
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNI 61 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~--L~d~~tL~~~gi 61 (145)
....+.+.+..|+.++++++++.++++++.|.|++.+.. ++......++.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 456788899999999999999999999999999998843 344555556554
No 161
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=89.39 E-value=1.7 Score=33.21 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=45.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcC-ceeeeeC---C--eeccCCCcccccc
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYN 60 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-~q~L~~~---G--~~L~d~~tL~~~g 60 (145)
|.+.|..++|....++|++.+|+.+|-+.|.+..|+... ..-|.+. | .-|+.+..|.+..
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 468899999999999999999999999999999998743 2444432 2 2356666665543
No 162
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=89.29 E-value=1.1 Score=28.25 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCe
Q 032224 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (145)
Q Consensus 9 ~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~ 48 (145)
++-.|.|.|+++.+..+|+.+|..+..+. +.+.+.|++.
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 45689999999999999999999999883 3333445544
No 163
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.93 E-value=2.2 Score=36.39 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=44.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHh--CCCc------Cceeeee----CCe-eccCC-------------CccccccccCC
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~q~L~~----~G~-~L~d~-------------~tL~~~gi~~~ 64 (145)
..+.+.|-..+||.++|++|-... |+|. +++.|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 347788889999999999997553 5553 4455554 233 35442 37999999999
Q ss_pred CEEEEEEEe
Q 032224 65 STLHLVLRL 73 (145)
Q Consensus 65 sti~l~~~~ 73 (145)
++|.++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887554
No 164
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=88.76 E-value=1.4 Score=29.98 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=40.2
Q ss_pred EEEcC----CCcHHHHHHHHHHHhCCCcCceeeee--CCeec-----cC--CCccccccccCCCEEEEEE
Q 032224 15 LEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 15 l~V~~----~~TV~~LK~~I~~~~gip~~~q~L~~--~G~~L-----~d--~~tL~~~gi~~~sti~l~~ 71 (145)
+.|++ .+|+.+|-+.|...+|.+. ++.+.- +.+.| +| +.+|+++|+++|+.|.+.-
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 45553 4799999999988899864 555542 23444 22 3789999999999987764
No 165
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=88.07 E-value=0.59 Score=39.00 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCcCceeeee
Q 032224 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (145)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~ 45 (145)
..+.|..++|+.+|+++|++..|+|+++|||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 468899999999999999999999999999974
No 166
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=87.17 E-value=4 Score=25.79 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=29.4
Q ss_pred EEEEeCCCC-EEEEEEc-CCCcHHHHHHHHHHHhCCCcCceeee
Q 032224 3 IFVKTLTGK-TITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLI 44 (145)
Q Consensus 3 I~Vk~~~g~-~~~l~V~-~~~TV~~LK~~I~~~~gip~~~q~L~ 44 (145)
|+-+..+.+ ...+.++ ...+|.+||.+|..+.++-..+.-|.
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 555655554 4567887 46799999999998887755454443
No 167
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=86.06 E-value=2.9 Score=26.19 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=51.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCcCceeee-eCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~-~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
.+.|+.++....+-.-.++++.+|+...-++ -+|--+...++-...=++.|+.|.|+.|.+-|
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 4689999999888888899999999776655 45556777788877778999999999887655
No 168
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=85.67 E-value=2 Score=27.96 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=45.5
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCc-eeee------eCCeeccCCCcc----ccccccCCCEEEE
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI------FAGKQLEDGRTL----ADYNIQKESTLHL 69 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~------~~G~~L~d~~tL----~~~gi~~~sti~l 69 (145)
|.|-..+|....|.|++++|+.++-+.+..+.+...+. --|+ +--+.++|...| +...+.....+.+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 44555689999999999999999999999998876443 2332 122567887654 3344444444443
No 169
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=85.25 E-value=3.9 Score=27.35 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=45.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHH-HhC-------CCcCceeeeeCCeecc--CCCccccccccCCCEEEEE
Q 032224 12 TITLEVESSDTIDNVKAKIQD-KEG-------IPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~-~~g-------ip~~~q~L~~~G~~L~--d~~tL~~~gi~~~sti~l~ 70 (145)
.+.+.|+|+++.++|-+++-. .++ |+-+.-.+..+|++.. .+.+|.+.||...|.|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 478999999999999988753 334 3333456778999874 5689999999988888765
No 170
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=84.71 E-value=0.91 Score=39.03 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=40.3
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCC-eeccCCCccccc
Q 032224 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADY 59 (145)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G-~~L~d~~tL~~~ 59 (145)
.+...+.+.++.|+.+|+..|++.+|||++.|.+++.. ..++.....++|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 45567889999999999999999999999999988754 466666555554
No 171
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=83.58 E-value=7.2 Score=25.47 Aligned_cols=63 Identities=10% Similarity=0.206 Sum_probs=45.2
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeee---eCCee--ccCC--CccccccccCCCEEEEEEE
Q 032224 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDG--RTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 8 ~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~---~~G~~--L~d~--~tL~~~gi~~~sti~l~~~ 72 (145)
.+..-+++.+..+.|+.+++..++++.+...+++.|+ ++|.. |.++ .....+++ ...|++..+
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~--NgRLfvc~k 86 (104)
T 1wgy_A 17 TEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEA--SGRIYVYRK 86 (104)
T ss_dssp SSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCS--SCEEEEEEC
T ss_pred ccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccc--cceEEEeeh
Confidence 3455677888999999999999999999877778776 67863 4433 33344444 567777655
No 172
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=81.99 E-value=7.3 Score=24.39 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=48.9
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHh-C--CCc--C-ceeeeeCC--eeccCCCccccccccCCCEEEEEEE
Q 032224 12 TITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~-g--ip~--~-~q~L~~~G--~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
...+.|+.++|+.++=++++... | +++ . -.++.++| +.|..+.++++.||.+-..|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 45578999999999999997553 3 322 2 46777888 8999999999999999999988753
No 173
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=80.92 E-value=8.1 Score=24.21 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=48.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHh-C--CC--cCceeeeeCCee--ccCCCccccccccCCCEEEEEE
Q 032224 12 TITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~-g--ip--~~~q~L~~~G~~--L~d~~tL~~~gi~~~sti~l~~ 71 (145)
...+.|+.++|+.++=++++... | ++ |.-.++..+|.. |.++.++++.||++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 45678999999999999997653 3 32 235678889987 9999999999999999998764
No 174
>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e
Probab=80.32 E-value=0.13 Score=30.63 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=21.8
Q ss_pred cCCccccccccccCCcccccccceeee
Q 032224 74 RGGAKKRKKKTYTKPKKIKHKKKKVKL 100 (145)
Q Consensus 74 ~gg~~k~~k~~~~~pk~~k~~~kk~k~ 100 (145)
.|.-.+++|+..+|||.+++++++.+.
T Consensus 5 HGSLarAGKVR~QTPKV~k~eKkk~~~ 31 (63)
T 3u5c_e 5 HGSLARAGKVKSQTPKVEKTEKPKKPK 31 (63)
T ss_dssp BCCCTTTTHHHHHSCCCCCCCCCCCCC
T ss_pred cchhhhcccccCCCCCCcccccccCCc
Confidence 456678899999999999988776543
No 175
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=80.25 E-value=0.38 Score=29.67 Aligned_cols=26 Identities=35% Similarity=0.797 Sum_probs=19.5
Q ss_pred EEEecccCCCCCCCccEEecee--CCcccccC
Q 032224 114 VQRLRKECPNAECGAGTFMASH--FDRHYCEF 143 (145)
Q Consensus 114 ~~~l~~~c~~~~c~~g~~ma~h--~~~~~c~~ 143 (145)
|..+.-.| +|| +.|++.| .|.|-|.-
T Consensus 35 vgL~gf~C---rCg-~~FCs~HRy~e~H~C~f 62 (74)
T 1wfl_A 35 VGLTGFDC---RCG-NLFCGLHRYSDKHNCPY 62 (74)
T ss_dssp CGGGCEEC---TTS-CEECSSSCSTTTTTCCC
T ss_pred ccccCeec---CCC-CEechhcCCCccCCCcc
Confidence 33456788 599 8999999 57888853
No 176
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.56 E-value=1.2 Score=26.72 Aligned_cols=22 Identities=45% Similarity=1.044 Sum_probs=18.0
Q ss_pred cccCCCCCCCccEEecee--CCcccccC
Q 032224 118 RKECPNAECGAGTFMASH--FDRHYCEF 143 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h--~~~~~c~~ 143 (145)
.-.| +|| ++|++.| .|+|.|..
T Consensus 29 ~f~C---rCg-~~FC~~HR~~e~H~C~f 52 (64)
T 1wg2_A 29 GFKC---KCG-STFCGSHRYPEKHECSF 52 (64)
T ss_dssp CEEC---TTS-CEECSSSCSSTTTTCCC
T ss_pred CeEe---ecC-CEecccCCCccccCCCc
Confidence 4678 799 8999999 58888854
No 177
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=77.19 E-value=11 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=36.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHhCCC---cCceeee--eCCe---eccCCCccccc
Q 032224 12 TITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAGK---QLEDGRTLADY 59 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip---~~~q~L~--~~G~---~L~d~~tL~~~ 59 (145)
.+.+-++.+.||+||-+.+....+++ ...++|+ ++++ .+.++.+|+++
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 46677888999999999999999987 3566775 7776 45666666544
No 178
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=76.33 E-value=7.1 Score=29.42 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=35.6
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeee----C---CeeccCCCcccc
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----A---GKQLEDGRTLAD 58 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~----~---G~~L~d~~tL~~ 58 (145)
|.|-..+|....|.|++++|+.||-+.+..+.+++.+.-..++ . -+.|+|...+-+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 4444567889999999999999999999887765543322222 1 257788765543
No 179
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=75.08 E-value=4.6 Score=25.98 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=41.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHh---CCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCC
Q 032224 12 TITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~---gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg 76 (145)
.+.+++++.+||.++-++..-.. .|..+...+..+|+....+ .-+++|+.|.++-.+.-.
T Consensus 27 ~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d-----~~L~dGDRVEIyrpl~~D 89 (97)
T 2hj1_A 27 LKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT-----DVLKEGDRIEIYRPLLAD 89 (97)
T ss_dssp EEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT-----CBCCTTCEEEECCCCC--
T ss_pred EEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC-----ccCCCCCEEEEEecccCC
Confidence 56788999999999998875422 3444456777888877643 446789999987554443
No 180
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.37 E-value=1.4 Score=26.34 Aligned_cols=22 Identities=45% Similarity=0.866 Sum_probs=17.9
Q ss_pred cccCCCCCCCccEEecee--CCcccccC
Q 032224 118 RKECPNAECGAGTFMASH--FDRHYCEF 143 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h--~~~~~c~~ 143 (145)
.-.| +|| ++|++.| .|+|.|.-
T Consensus 29 ~f~C---rCg-~~FC~~HRy~e~H~C~f 52 (64)
T 1wfh_A 29 GFMC---RCG-TTFCGSHRYPEVHGCTF 52 (64)
T ss_dssp CEEC---SSS-CEECTTTCSTTTTTCCC
T ss_pred CEEe---ecC-CEeccccCCcccCCCCc
Confidence 4678 699 8999999 58888854
No 181
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.33 E-value=1.4 Score=27.16 Aligned_cols=23 Identities=39% Similarity=0.915 Sum_probs=18.6
Q ss_pred cccCCCCCCCccEEecee--CCcccccCC
Q 032224 118 RKECPNAECGAGTFMASH--FDRHYCEFV 144 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h--~~~~~c~~~ 144 (145)
.-.| +|| ++|++.| .++|.|.-.
T Consensus 39 ~f~C---rCg-~~FCs~HRy~e~H~C~fD 63 (74)
T 1wfp_A 39 GFKC---RCG-STFCGTHRYPESHECQFD 63 (74)
T ss_dssp CEEC---TTS-CEECTTTCSTTTSCCCSC
T ss_pred ceEe---ccC-CEeccccCCCcCCCCcCc
Confidence 4678 799 8999999 489988643
No 182
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=74.21 E-value=6.8 Score=27.59 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=41.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHhC-CC---------cCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCc
Q 032224 14 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~g-ip---------~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
.++++. .||.+|.+.+..... +. .....+..||.......- .+.-|++|++|.++....||.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECcccccc
Confidence 345655 899999999977631 10 123456678887765322 244678999998877666765
No 183
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.04 E-value=6.6 Score=25.01 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHHhCCCcCceeee--eCCeeccCCCccccccccCCCEEEEEEE
Q 032224 21 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~~q~L~--~~G~~L~d~~tL~~~gi~~~sti~l~~~ 72 (145)
.++.+|+.+..+.++++....+|+ .+|..++|+..+..+. ..|+.+++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEEc
Confidence 479999999999999976566665 4788988876655553 556666654
No 184
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=73.74 E-value=4.4 Score=26.21 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHHHhCCCcC-----ceeeeeCC
Q 032224 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAG 47 (145)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-----~q~L~~~G 47 (145)
+..+.|-|+++.+..+|..+|..+.+++.+ ..+|-|..
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 446899999999999999999999886522 24566644
No 185
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Probab=73.20 E-value=0.64 Score=29.02 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=20.3
Q ss_pred ecCCccccccccccCCcccccccc-eee
Q 032224 73 LRGGAKKRKKKTYTKPKKIKHKKK-KVK 99 (145)
Q Consensus 73 ~~gg~~k~~k~~~~~pk~~k~~~k-k~k 99 (145)
..|.-.+++|+..+|||..+++++ |.+
T Consensus 4 vHGSLarAGKVR~QTPKV~kqeKk~K~~ 31 (80)
T 2xzm_X 4 MHGTLAKAGKVRKQTPKVEKKDKPRKTP 31 (80)
T ss_dssp ---CCTTTTHHHHHSCCCCCCCCSSCCC
T ss_pred chhhhhccccccccCCCcchhhhcccCC
Confidence 446667889999999999999987 544
No 186
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=72.96 E-value=7.8 Score=25.83 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=40.4
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCcCc-eeeeeCCeeccCCCccccccc---cCCCEEEEEEE
Q 032224 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (145)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~~G~~L~d~~tL~~~gi---~~~sti~l~~~ 72 (145)
+-|+.+.||++|...|.....+++++ +-|+.++....-+.+++++=- .++.-|+|...
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 56889999999999999999998876 455557775555666655411 12446666543
No 187
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=71.64 E-value=6.9 Score=32.39 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=37.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCc--Cceeeee
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~--~~q~L~~ 45 (145)
|.+.|..++|....+.+++.+|+.+|-+.|....|+.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35778889999999999999999999999999999974 3445543
No 188
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=70.11 E-value=1.3 Score=29.34 Aligned_cols=60 Identities=27% Similarity=0.382 Sum_probs=45.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhCCCcC--ceeeeeCC---eeccCCCccccccccCCCEEEEE
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~--~q~L~~~G---~~L~d~~tL~~~gi~~~sti~l~ 70 (145)
...+++|..+.-|+.+..+|-+...++.+ +--|..-. ..|.-..+|..|||+.++.+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 56788899899999999999988777653 33333222 25778899999999999988765
No 189
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=69.94 E-value=11 Score=24.74 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=26.3
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHh
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~ 34 (145)
|.+=.++|-.+.++++.+.|+.+||+.+.+..
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 34445688889999999999999999997663
No 190
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.78 E-value=1.2 Score=26.86 Aligned_cols=21 Identities=38% Similarity=0.895 Sum_probs=17.2
Q ss_pred ccCCCCCCCccEEecee--CCcccccC
Q 032224 119 KECPNAECGAGTFMASH--FDRHYCEF 143 (145)
Q Consensus 119 ~~c~~~~c~~g~~ma~h--~~~~~c~~ 143 (145)
-.| +|| ++|++.| .|+|.|.-
T Consensus 33 f~C---rCg-~~FC~~HRy~e~H~C~f 55 (67)
T 1x4w_A 33 GSC---RCG-YVFCMLHRLPEQHDCTF 55 (67)
T ss_dssp HCC---SSS-CCCCTTTCSTGGGTCSS
T ss_pred eEe---cCC-CEehhccCCccccCCcc
Confidence 478 899 8999999 47888853
No 191
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=67.88 E-value=14 Score=23.84 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHhCCCcC--ceeee--eCCeeccCCCccccccccCCCEEEEEE
Q 032224 21 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~--~q~L~--~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.++.+|+.+....++++.+ ..+|+ .+|..++|+..+..+. ..|+.+++
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEE
Confidence 5799999999999999753 34444 5899998877666554 44554544
No 192
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=67.82 E-value=13 Score=28.39 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=37.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCce-eee--e-C---CeeccCCCcc
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI--F-A---GKQLEDGRTL 56 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q-~L~--~-~---G~~L~d~~tL 56 (145)
|.|=..+|....|.|++++|+.||-+.+..+.+++...- .|+ + . -+.|+|...+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V 94 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENL 94 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhH
Confidence 344445788999999999999999999988887654332 222 1 1 1466666554
No 193
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=67.76 E-value=8.9 Score=25.81 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=39.3
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCcCc-eeeeeCCeeccCCCccccccc--c-CCCEEEEEEE
Q 032224 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI--Q-KESTLHLVLR 72 (145)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~~G~~L~d~~tL~~~gi--~-~~sti~l~~~ 72 (145)
+-|+.+.||++|...|.....+++++ +-|+.++....-+.+++++=- + ++.-|+|...
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 56889999999999999999998876 444456644455566655421 1 3446666554
No 194
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=67.21 E-value=4.8 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHhCCC-----cCceeeeeCC
Q 032224 12 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 47 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip-----~~~q~L~~~G 47 (145)
.+.|.|+++.+..+|..+|..+.+.. ....+|-|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57889999999999999999999865 3456776754
No 195
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=66.71 E-value=9.9 Score=24.81 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=38.7
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCcCc-eeeeeCCeeccCCCcccccc--c-cCCCEEEEEE
Q 032224 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYN--I-QKESTLHLVL 71 (145)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~~G~~L~d~~tL~~~g--i-~~~sti~l~~ 71 (145)
+-|+.+.||++|...|....++++++ +-|+.++....-+.+++++= - .++.-|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 57888999999999999999998865 45555665445566666551 1 1244566654
No 196
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=66.47 E-value=1.6 Score=27.59 Aligned_cols=22 Identities=45% Similarity=1.000 Sum_probs=18.0
Q ss_pred cccCCCCCCCccEEeceeC--CcccccC
Q 032224 118 RKECPNAECGAGTFMASHF--DRHYCEF 143 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h~--~~~~c~~ 143 (145)
.-.| +|| ++|++.|- ++|.|.-
T Consensus 40 ~f~C---rCg-~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 40 SFEC---RCG-NNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CEEC---TTC-CEECTTTCSTGGGTCCS
T ss_pred CeEc---CCC-CEecccCCCccCCCCcc
Confidence 5678 699 89999995 8888853
No 197
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=65.50 E-value=15 Score=23.31 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHHHhCCCcCcee
Q 032224 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (145)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~ 42 (145)
...+.|.|++.+|=.++|+.++..+++.+....
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~Vn 59 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVN 59 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEE
Confidence 368999999999999999999999999887653
No 198
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=64.28 E-value=11 Score=32.15 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=37.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCc-Cceeeee
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 45 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~-~~q~L~~ 45 (145)
|.+.|..++|....+.|++.+|+.+|-+.|....|+.. +..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45778899999999999999999999999999999754 3344443
No 199
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=64.06 E-value=18 Score=26.65 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=30.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcC
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~ 39 (145)
|.|-..+|....+.|++++|+.+|-+.+....+++.+
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 3444557888999999999999999999999998654
No 200
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=63.83 E-value=13 Score=24.60 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=40.0
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCcCc-eeeeeCCeeccCCCcccccc--c-cCCCEEEEEEE
Q 032224 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYN--I-QKESTLHLVLR 72 (145)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~~G~~L~d~~tL~~~g--i-~~~sti~l~~~ 72 (145)
+-|+.+.||++|..-|..+..+++++ +-|+.++.....+.+++++= - .++.-|+|...
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 46888999999999999999998865 45545665445566666551 1 23556777654
No 201
>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=62.65 E-value=1.3 Score=26.27 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=18.0
Q ss_pred ccccccccccCCccccccccee
Q 032224 77 AKKRKKKTYTKPKKIKHKKKKV 98 (145)
Q Consensus 77 ~~k~~k~~~~~pk~~k~~~kk~ 98 (145)
-.+++|+..+|||..+++++|.
T Consensus 8 LarAGKVR~QTPKV~kqeKkk~ 29 (62)
T 3iz6_Z 8 LARAGKVRGQTPKVAKQDKKKK 29 (62)
T ss_dssp HHHHHTTCCCCSSSSCCHHHHH
T ss_pred hhccccccCCCCCcchhhhccC
Confidence 3478899999999999887654
No 202
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.14 E-value=2.5 Score=25.09 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=19.9
Q ss_pred ecccCCCCCCCccEEecee--CCcccccC
Q 032224 117 LRKECPNAECGAGTFMASH--FDRHYCEF 143 (145)
Q Consensus 117 l~~~c~~~~c~~g~~ma~h--~~~~~c~~ 143 (145)
+.-.|. .|+ +.|+..| .+.|-|..
T Consensus 26 l~f~C~--~C~-~~FC~~HR~~e~H~C~~ 51 (63)
T 1x4v_A 26 MKLTCE--RCS-RNFCIKHRHPLDHDCSG 51 (63)
T ss_dssp SCCBCS--SSC-CBCCHHHHSTTSSCCCS
T ss_pred cceECC--CCC-cccCcccCCccCCcCCC
Confidence 456898 898 8999999 57888865
No 203
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=61.93 E-value=18 Score=22.61 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceee
Q 032224 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (145)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L 43 (145)
.+.+.+.|++.+|=.++|+.++..+++.+....-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 4678999999999999999999999998876543
No 204
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=61.21 E-value=15 Score=24.31 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=38.6
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCcCc-eeeeeCCeeccCCCccccccc---cCCCEEEEEEE
Q 032224 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (145)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~~G~~L~d~~tL~~~gi---~~~sti~l~~~ 72 (145)
+-|+.+.||++|...|.....+++++ +-|+.++....-+.+++++=- .++.-|+|...
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 55899999999999999999998865 444446654445556554411 13446666544
No 205
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=60.91 E-value=14 Score=24.99 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=39.5
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCcCceeee-eCCeec-cCCCcccccc--c-cCCCEEEEEEE
Q 032224 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYN--I-QKESTLHLVLR 72 (145)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~q~L~-~~G~~L-~d~~tL~~~g--i-~~~sti~l~~~ 72 (145)
+-|+.+.||++|...|..+.++++++--.+ |.+..+ ..+.+++++= - .++.-|+|...
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 568899999999999999999998764434 544434 4566665541 1 13456666654
No 206
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=59.22 E-value=18 Score=22.89 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhCCCcCce
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q 41 (145)
+.+.+.|++.+|=.++|+.++..+++.+...
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~V 52 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKV 52 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeee
Confidence 6899999999999999999999999987665
No 207
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=58.65 E-value=16 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=27.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCcCcee
Q 032224 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (145)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~q~ 42 (145)
+.+.|++.+|=.++|+.|+..+++.+....
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VN 54 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGIS 54 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEE
Confidence 889999999999999999999999887653
No 208
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=57.56 E-value=28 Score=23.18 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHHHhCCCcC------ceeee---eCCe--eccCC--CccccccccCCCEEEEEEE
Q 032224 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDG--RTLADYNIQKESTLHLVLR 72 (145)
Q Consensus 9 ~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~------~q~L~---~~G~--~L~d~--~tL~~~gi~~~sti~l~~~ 72 (145)
+..-+++.+..+.|+.+++..++++.+..-+ ++.|+ ++|. .|.++ .....+++ ...|++..+
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--NgRLfvc~k 92 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--NSHLFACTR 92 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--SEEEEEECT
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--cceEEEeeh
Confidence 3344668899999999999999999987543 67665 6776 34433 33445554 556666543
No 209
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.03 E-value=25 Score=21.93 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceee
Q 032224 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (145)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L 43 (145)
.+.+.|.|++.+|=.++|+.++..+++.+....-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 3689999999999999999999999998876543
No 210
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=53.13 E-value=26 Score=30.17 Aligned_cols=59 Identities=10% Similarity=0.254 Sum_probs=39.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHhC--CCcCc--------eeeeeCCe--ec------cCCCccccccccCCCEEEEE
Q 032224 12 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--QL------EDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~g--ip~~~--------q~L~~~G~--~L------~d~~tL~~~gi~~~sti~l~ 70 (145)
...+.++++.|+.+|-+.|..+.. +.... ..++|... .| .-+.+|+++|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 356788888999999999988643 33222 24444422 11 12478999999999998875
No 211
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.24 E-value=5.9 Score=24.93 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=19.7
Q ss_pred ecccCCCCCCCccEEeceeC--CcccccC
Q 032224 117 LRKECPNAECGAGTFMASHF--DRHYCEF 143 (145)
Q Consensus 117 l~~~c~~~~c~~g~~ma~h~--~~~~c~~ 143 (145)
+.-.|. .|+ +.|+..|- +.|-|..
T Consensus 39 l~f~C~--~C~-~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 39 VAVICP--YCE-KNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp SCEECT--TTC-CEECGGGCSTGGGTCSS
T ss_pred cceECC--CCC-cccccccCCccCCCCCC
Confidence 667899 898 89999994 6788865
No 212
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=50.29 E-value=40 Score=20.42 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=40.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEE
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
+|+|-+++|.. ++++...|+.|+=..|....+-. -.--..+|+..+-+ +.+++|++|.++-
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L~-----~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPID-----YKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECTT-----CBCCTTCBEEEEE
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCCC-----cccCCCCEEEEEc
Confidence 57888888876 45778899999988876554311 12223577766543 3456788888764
No 213
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=49.73 E-value=6.3 Score=24.19 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=19.2
Q ss_pred ecccCCCCCCCccEEeceeC--CcccccC
Q 032224 117 LRKECPNAECGAGTFMASHF--DRHYCEF 143 (145)
Q Consensus 117 l~~~c~~~~c~~g~~ma~h~--~~~~c~~ 143 (145)
|.-.|. .|+ ++|+++|. +.|-|-.
T Consensus 28 lpf~C~--~C~-~~FC~~HR~~e~H~C~~ 53 (75)
T 1wys_A 28 LPFVCD--GCS-GIFCLEHRSKDSHGCSE 53 (75)
T ss_dssp CCEECT--TTC-CEECSTTCSSGGGTCCC
T ss_pred eeeECc--ccC-cCcCcccCCccccCCCC
Confidence 567798 898 89999995 5777754
No 214
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.00 E-value=10 Score=21.44 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=16.3
Q ss_pred cccCCCCCCCccEEeceeCCcccccCC
Q 032224 118 RKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
...|| +|++= .+..-|.|.||
T Consensus 14 k~iCp--kC~a~----~~~gaw~CrKC 34 (51)
T 3j21_g 14 KYVCL--RCGAT----NPWGAKKCRKC 34 (51)
T ss_dssp EEECT--TTCCE----ECTTCSSCSSS
T ss_pred CccCC--CCCCc----CCCCceecCCC
Confidence 35699 99962 68888998876
No 215
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=45.00 E-value=38 Score=23.60 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=29.1
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhCCCcCcee
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~ 42 (145)
+.+.|.|++..|=.++|+.|+..+++.+....
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVN 125 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVN 125 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEE
Confidence 57899999999999999999999999987664
No 216
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=44.60 E-value=27 Score=21.85 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHH
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~ 33 (145)
+.|...+|-+|.++|+.++-+..-|..|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 5566678999999999999888888777644
No 217
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=44.25 E-value=20 Score=24.73 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHhCCCcC--ceeee--eCCeeccCCCccccccccCCCEEEEEE
Q 032224 21 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~--~q~L~--~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.++.+|+.+....++++.+ ..+|+ -+|..++|+.-+..+. ..|+.+++
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp---~nT~LmvL 133 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP---SNTKFVAL 133 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSC---SSCBEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCC---CCCEEEEE
Confidence 5799999999999999653 55554 5788888876555543 34544443
No 218
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=43.53 E-value=32 Score=21.75 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (145)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 68888889999999999999988754
No 219
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=42.71 E-value=8.5 Score=20.12 Aligned_cols=10 Identities=40% Similarity=1.139 Sum_probs=7.7
Q ss_pred CCCCCCCccE
Q 032224 121 CPNAECGAGT 130 (145)
Q Consensus 121 c~~~~c~~g~ 130 (145)
-||.+||.|.
T Consensus 3 tpssrcgsgg 12 (42)
T 2jr3_A 3 TPSSRCGSGG 12 (42)
T ss_dssp CCSCCTTTSS
T ss_pred CccccccCCC
Confidence 3788999875
No 220
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=42.29 E-value=37 Score=24.48 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=38.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCC
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G 47 (145)
+|.|...+|..+.++=-...-+..|++.+...++++.+.-.|...|
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kG 131 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRG 131 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTT
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeeccc
Confidence 5777777888888887788889999999999999998776665555
No 221
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=41.47 E-value=40 Score=21.13 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=39.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCcCc-eeeeeCCeec-cCCCcccccc--ccCCCEEEEEEE
Q 032224 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLADYN--IQKESTLHLVLR 72 (145)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~-q~L~~~G~~L-~d~~tL~~~g--i~~~sti~l~~~ 72 (145)
.+-|+.+.|++++..-|..+..+++++ .-|+.+...+ ..+.+++++= -+++..|++...
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 467899999999999999999998865 4444566544 3355554431 124556666543
No 222
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=41.18 E-value=15 Score=25.39 Aligned_cols=23 Identities=26% Similarity=0.824 Sum_probs=16.7
Q ss_pred EEEecccCCCCCCCccEEeceeCCcccccCC
Q 032224 114 VQRLRKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 114 ~~~l~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
.......|| .||+ .++++||..+
T Consensus 67 ~q~~~~~C~--~Cg~------~f~~Y~C~~C 89 (143)
T 2dkt_A 67 LQHAQQTCE--DCST------LFGEYYCSIC 89 (143)
T ss_dssp EECSCSBCS--SSCC------BSCSEECSSS
T ss_pred cccccCcCC--CCCc------cceeeEecee
Confidence 344556899 7984 6788999875
No 223
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=40.85 E-value=52 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceee
Q 032224 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (145)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L 43 (145)
.+.+.|.|+...+=.++|+.|+..+++.+....-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 4688999999999999999999999998876543
No 224
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=40.08 E-value=51 Score=22.59 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhCCCcCcee
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~ 42 (145)
+.+.|.|+...+=.++|+.++..+++.+....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 111 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVN 111 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 57899999999999999999999999887654
No 225
>3h0n_A Uncharacterized protein DUF1470; treble CLEF zinc finger, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP}
Probab=38.19 E-value=15 Score=26.21 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=19.0
Q ss_pred cccCCCCCCCccEEe--ceeCCccccc
Q 032224 118 RKECPNAECGAGTFM--ASHFDRHYCE 142 (145)
Q Consensus 118 ~~~c~~~~c~~g~~m--a~h~~~~~c~ 142 (145)
.+.|.++.|. .+|. +.+..|-||.
T Consensus 145 lr~C~~~~C~-~~f~D~sr~~~RrwCs 170 (188)
T 3h0n_A 145 FGICNAHRCD-RVYFDTSRNGTRQYCS 170 (188)
T ss_dssp EEECCSTTCC-CEEECCSSSCCCCCSS
T ss_pred cccCCCCCCC-EEEeeCCCCCCCCccC
Confidence 4679999998 6887 5577788885
No 226
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=37.57 E-value=28 Score=21.99 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=19.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCcCc
Q 032224 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (145)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~ 40 (145)
+.++..+......|++.|++..+++++.
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~~ 45 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDADK 45 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChhh
Confidence 4567777888999999999999988763
No 227
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=37.25 E-value=30 Score=27.03 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=37.7
Q ss_pred EEeCCCC----EEEEEEcCCCcHHHHHHHHHHHhCCCc-Cceeeee--C--Ce--eccCCCcccc
Q 032224 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--A--GK--QLEDGRTLAD 58 (145)
Q Consensus 5 Vk~~~g~----~~~l~V~~~~TV~~LK~~I~~~~gip~-~~q~L~~--~--G~--~L~d~~tL~~ 58 (145)
|...+|+ ...+.+++++|+.+|-..|....|+.. +..-|.+ . |. -|+.+..|.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 3445666 899999999999999999999999843 2334443 1 22 3566666654
No 228
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=37.17 E-value=37 Score=25.79 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=27.7
Q ss_pred CEEEEEeCCCCEEEEEEcC--CCcHHHHHHHHHHHhCCCc
Q 032224 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPP 38 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~--~~TV~~LK~~I~~~~gip~ 38 (145)
+.|.|-.++|....++|+. ++|+.+|-+ ..|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~ 41 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQ 41 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCc
Confidence 4688889999999999998 999999943 356654
No 229
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=37.12 E-value=56 Score=20.48 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=38.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeec-cCCCcccccc--ccCCCEEEEEEE
Q 032224 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLVLR 72 (145)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L-~d~~tL~~~g--i~~~sti~l~~~ 72 (145)
.+-|+.+.|++++-.-|..+.++ +..-|+.+...+ ..+.+++++= -+++..|++.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 35799999999999999999988 555666677543 3455554431 124556666543
No 230
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=36.89 E-value=52 Score=26.09 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHH--HHhCCC---cCceeeee----CC--eeccCCCccccc
Q 032224 8 LTGKTITLEVESSDTIDNVKAKIQ--DKEGIP---PDQQRLIF----AG--KQLEDGRTLADY 59 (145)
Q Consensus 8 ~~g~~~~l~V~~~~TV~~LK~~I~--~~~gip---~~~q~L~~----~G--~~L~d~~tL~~~ 59 (145)
++|+...+.+++++||.++-..|. .+.|+. ++..-|.+ .+ ..|+++.+|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 677788999999999999999998 566753 33344432 22 356777776653
No 231
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=35.78 E-value=39 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~ 28 (145)
.|.+. .+|+.+.+++++++|+.++-.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 56664 479999999999999988653
No 232
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=35.77 E-value=39 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (145)
.|.+. .+|+.+.+++++.+|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 45554 4799999999999999886544
No 233
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=35.39 E-value=41 Score=23.24 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=20.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHH
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKI 30 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I 30 (145)
|.+. .+|+.+.+++++.+|+.++-..+
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4443 48999999999999998876654
No 234
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=35.27 E-value=32 Score=23.96 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (145)
.|.+. .+|+.+.+++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45553 4799999999999999886544
No 235
>2wux_A Polyhedrin; microcrystals, polyhedra, viral protein, viral occlusion BODY, viral capsid; 1.84A {Autographa californica nuclearpolyhedrosis virus} PDB: 3jw6_A* 2wuy_A 3jvb_A
Probab=35.24 E-value=26 Score=25.61 Aligned_cols=29 Identities=38% Similarity=0.622 Sum_probs=23.1
Q ss_pred EEEecccCCCCCCCccEEeceeCCcccccCCC
Q 032224 114 VQRLRKECPNAECGAGTFMASHFDRHYCEFVP 145 (145)
Q Consensus 114 ~~~l~~~c~~~~c~~g~~ma~h~~~~~c~~~~ 145 (145)
+.++|-.=|| ||=. |+|+|.=|..|.-||
T Consensus 121 ~i~~rP~~pN-Rcyr--FlaQhaLr~d~dyVp 149 (245)
T 2wux_A 121 VVNMRPTRPN-RCYK--FLAQHALRCDPDYVP 149 (245)
T ss_dssp EEEEEESSSS-CCCC--EEEEEEEESCSCCCC
T ss_pred eEecccCCCc-hHHH--HHHHHhhcCCCCcCc
Confidence 3668888887 9976 999999887777665
No 236
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=34.28 E-value=42 Score=23.24 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (145)
|.|.+. .+|+.+.+++++.+||.+.-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 445564 4789999999999999886654
No 237
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=33.33 E-value=54 Score=22.72 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCcHHHHHHHHHHHhCCCcCceee
Q 032224 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (145)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L 43 (145)
+.+.|.|+...+=.++|+.|+..+++.+....-
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 122 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNT 122 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEe
Confidence 578999999999999999999999998876543
No 238
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=33.26 E-value=35 Score=21.67 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHH
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~ 33 (145)
+.|...+|-+|.++|+.++-+..-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4566668999999999998877777776644
No 239
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=33.08 E-value=99 Score=19.98 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=46.6
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCe--eccCCCccccccccCCCEEEEE
Q 032224 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 8 ~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~--~L~d~~tL~~~gi~~~sti~l~ 70 (145)
+.++++.|...++-++.++-.-|-.++|+..++..+...|. +|+-...++.. +|..+.+.
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l---dgqrl~Le 86 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV---ASQTLVLD 86 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS---SSSCEEEC
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh---cCcEEEEe
Confidence 56788889999999999999999999999988888777775 56656666654 35565543
No 240
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=32.93 E-value=90 Score=19.43 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=32.8
Q ss_pred EEEEeCCC-CEEEEEEc--CCCcHHHHHHHHHHHhCCCcCceeeeeCC
Q 032224 3 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (145)
Q Consensus 3 I~Vk~~~g-~~~~l~V~--~~~TV~~LK~~I~~~~gip~~~q~L~~~G 47 (145)
|.|++.-+ ....+.++ ...+..+|...++....++.....|.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 55665533 44456665 45899999999999999887777887744
No 241
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=31.62 E-value=57 Score=20.44 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (145)
+|++...+|....+++.+.+||.+.=
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 56676678888899999999887643
No 242
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=31.49 E-value=51 Score=20.88 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=37.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeCCeec-cCCCcccccc--ccCCCEEEEEEE
Q 032224 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLVLR 72 (145)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L-~d~~tL~~~g--i~~~sti~l~~~ 72 (145)
.+-|+.+.|+++|..-|..+..++ ..-|+.+...+ ..+.+++++= -+++..|++...
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys 90 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYA 90 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 467889999999999999999887 45554444344 4455555441 122445666543
No 243
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.49 E-value=26 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=12.4
Q ss_pred cccCCCCCCCccEEeceeCCcccccCC
Q 032224 118 RKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
.-.|| .||+..+--.=..-|.|..|
T Consensus 27 ~y~Cp--~CG~~~v~r~atGiW~C~~C 51 (83)
T 1vq8_Z 27 DHACP--NCGEDRVDRQGTGIWQCSYC 51 (83)
T ss_dssp CEECS--SSCCEEEEEEETTEEEETTT
T ss_pred cCcCC--CCCCcceeccCCCeEECCCC
Confidence 34588 88853332222344555443
No 244
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=31.35 E-value=93 Score=19.14 Aligned_cols=24 Identities=8% Similarity=0.425 Sum_probs=19.1
Q ss_pred eeeeeeeeeEEEcCCCcEEEecccC
Q 032224 97 KVKLAVLQFYKVDDSGKVQRLRKEC 121 (145)
Q Consensus 97 k~k~~v~k~~~v~~~~~~~~l~~~c 121 (145)
.......-.|.++ ||||.+++..|
T Consensus 88 ~~~~~~~~vf~~~-dGkI~e~~~Y~ 111 (112)
T 3f14_A 88 EAFVSYCDIYRFE-NDTIKTITSYC 111 (112)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred EEEEEEEEEEEEe-CCEEEEEEEEE
Confidence 4667778888998 89999988654
No 245
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=30.64 E-value=68 Score=19.82 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~ 28 (145)
+|++...+|....+++++.+|+.+.=.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 466665778888999999999877543
No 246
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=30.04 E-value=65 Score=29.33 Aligned_cols=69 Identities=28% Similarity=0.256 Sum_probs=43.8
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHHhC--------CCcCceeeee-C--Ce--ecc-CCCccccccccCCCEEE
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QLE-DGRTLADYNIQKESTLH 68 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~g--------ip~~~q~L~~-~--G~--~L~-d~~tL~~~gi~~~sti~ 68 (145)
|.+=.++|-.+.++|+.++|+++||++|.++.. ..+++-.+.+ + |. .+. ++..|.++..- -..+.
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~~-~p~l~ 132 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPF-LPVLK 132 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCBS-SSCEE
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeeccc-ceEEE
Confidence 344466899999999999999999999976622 1233334443 2 32 354 44778777643 33555
Q ss_pred EEEE
Q 032224 69 LVLR 72 (145)
Q Consensus 69 l~~~ 72 (145)
++-+
T Consensus 133 lve~ 136 (1092)
T 2y3a_A 133 LVTR 136 (1092)
T ss_dssp EEES
T ss_pred EEec
Confidence 5544
No 247
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=29.41 E-value=33 Score=23.76 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=15.6
Q ss_pred ccCCCCCC-C-----ccEEecee-----CCcccccCCC
Q 032224 119 KECPNAEC-G-----AGTFMASH-----FDRHYCEFVP 145 (145)
Q Consensus 119 ~~c~~~~c-~-----~g~~ma~h-----~~~~~c~~~~ 145 (145)
=.|||++| . .-.|-... .-=+||++.+
T Consensus 106 l~C~Np~CITn~E~v~s~F~v~~~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 106 LKCTNPNCITNKEKVRGKFKIESKNPLKIRCYYCEKFL 143 (149)
T ss_dssp SCCSCTTSGGGTSCCCCEEEEEEETTEEEEETTTCCBC
T ss_pred EEcCCCCCCcCCcccccEEEEEeCCCCEEEeeCCCcCh
Confidence 45999999 3 13454422 1236887753
No 248
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=28.99 E-value=62 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.8
Q ss_pred cceeeeeeeeeEEEcCCCcEEEecc
Q 032224 95 KKKVKLAVLQFYKVDDSGKVQRLRK 119 (145)
Q Consensus 95 ~kk~k~~v~k~~~v~~~~~~~~l~~ 119 (145)
.+.+.+.....+.++++|||.+++.
T Consensus 94 G~~~~~~g~dv~~fd~dGkI~~~~~ 118 (131)
T 3er7_A 94 GSVFTQDGTDIARLNADGKIVYLAN 118 (131)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEeeeEEEEEcCCCcEEEEEE
Confidence 3458889999999998899998763
No 249
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=28.85 E-value=18 Score=29.18 Aligned_cols=56 Identities=13% Similarity=0.291 Sum_probs=26.4
Q ss_pred EEEcCCCcHHHHHHHHHHHhC--CCcCc--------eeeeeCCe--ecc------CCCccccccccCCCEEEEE
Q 032224 15 LEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--QLE------DGRTLADYNIQKESTLHLV 70 (145)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~g--ip~~~--------q~L~~~G~--~L~------d~~tL~~~gi~~~sti~l~ 70 (145)
+.++++.|+.+|-+.+..+.. +.... ..++|... .|+ -+.+|+++|+.+|+.|.+.
T Consensus 345 ~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 345 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred EEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 455566777788888877533 32211 24455422 222 2467999999999988764
No 250
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=28.51 E-value=21 Score=23.96 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHhCCCcCceeee--eCCeeccCCCccccccccCCCEEEEEE
Q 032224 21 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 71 (145)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~~q~L~--~~G~~L~d~~tL~~~gi~~~sti~l~~ 71 (145)
.++.+|+.+..+.+++. ...+|+ .+|..++|+.-+..+. ..|+.+++
T Consensus 54 ~SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL 102 (122)
T 1d4b_A 54 ATRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLE---DDTCLMVL 102 (122)
T ss_dssp CCSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSS---SCCCCCEE
T ss_pred CCHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCC---CCCEEEEe
Confidence 47899999999999994 444444 5899998886655553 33444443
No 251
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=28.39 E-value=70 Score=20.08 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~L 26 (145)
+|++...+|+...+++.+.+|+.+.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHH
Confidence 4666557899889999999998774
No 252
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=26.78 E-value=1.2e+02 Score=18.84 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=38.9
Q ss_pred CEEEEEeCCCCEEEEEEc-CCCcHHHHHHHHHHHh----CCCcCc-e---eeee-CCeeccCCCccccccccCCCEEE
Q 032224 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKE----GIPPDQ-Q---RLIF-AGKQLEDGRTLADYNIQKESTLH 68 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~-~~~TV~~LK~~I~~~~----gip~~~-q---~L~~-~G~~L~d~~tL~~~gi~~~sti~ 68 (145)
|+|+|..- +..+.+... .+.||.+|-++-..++ +-.++. . .|-+ +|.+|+.+..|.+.= .+.+.|.
T Consensus 3 MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dVl-dD~e~i~ 78 (85)
T 2ns5_A 3 FKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDVA-DDKDRLV 78 (85)
T ss_dssp EEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHHS-CTTEEEE
T ss_pred cEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhhc-cCcceEE
Confidence 78889763 445666664 4569999987765554 332322 2 2234 777888777666542 2444443
No 253
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=25.89 E-value=1.1e+02 Score=20.20 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHHh-CCCcCceeeeeCC
Q 032224 21 DTIDNVKAKIQDKE-GIPPDQQRLIFAG 47 (145)
Q Consensus 21 ~TV~~LK~~I~~~~-gip~~~q~L~~~G 47 (145)
.|..+|+++|+..+ ++......|.|..
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 48999999999998 5555667777754
No 254
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.66 E-value=34 Score=20.66 Aligned_cols=15 Identities=40% Similarity=0.862 Sum_probs=11.3
Q ss_pred cccCCCCCCCccEEe
Q 032224 118 RKECPNAECGAGTFM 132 (145)
Q Consensus 118 ~~~c~~~~c~~g~~m 132 (145)
.+-||.+.|+.++..
T Consensus 25 ~~~CP~p~C~~~v~~ 39 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLP 39 (80)
T ss_dssp SCCCCSSSCCCCCCC
T ss_pred cEECCCCCCCcccEE
Confidence 567999899976543
No 255
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=25.57 E-value=1e+02 Score=19.05 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=20.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (145)
+|++...+|....+++.+.+|+.+.=
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776678888899999999987643
No 256
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=25.51 E-value=44 Score=21.65 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=22.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHHH
Q 032224 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (145)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~ 33 (145)
+.|...+|-+|.++|+.++-+..-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4566668999999999888766666666543
No 257
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=25.47 E-value=1.1e+02 Score=19.42 Aligned_cols=55 Identities=5% Similarity=0.147 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHHhCCCcCceeeeeCCeeccCCCccccccccCCCEEEEEEEecCCccc
Q 032224 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (145)
Q Consensus 19 ~~~TV~~LK~~I~~~~gip~~~q~L~~~G~~L~d~~tL~~~gi~~~sti~l~~~~~gg~~k 79 (145)
...=+.+|=+.+.+..|.|++.+.+.+.. +..+ -+|-..+...++.+...||...
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~-~~~g~~~~~~~i~I~~~~g~~~ 70 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRNRIAIEVLA-----GQRI-THGASRNPVAVIKVESIGALSA 70 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCCC-CBTTBCSSCEEEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHHHHCcChHHEEEEEEC-----CccE-EEcCCCCCeEEEEEEEecCCCH
Confidence 34456777788888999999987766532 2112 1233345567778887776543
No 258
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=25.14 E-value=71 Score=20.01 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=30.7
Q ss_pred EEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHHHhCCCcC
Q 032224 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (145)
Q Consensus 2 ~I~Vk~~~g--~~~~l~V~~~~TV~~LK~~I~~~~gip~~ 39 (145)
+|+|..... .++.+++...+-+..+-+++....+++++
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~~ 46 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPE 46 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCHH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCHH
Confidence 688876653 68889999999999999999877777654
No 259
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=24.69 E-value=63 Score=17.08 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhCCCcC
Q 032224 23 IDNVKAKIQDKEGIPPD 39 (145)
Q Consensus 23 V~~LK~~I~~~~gip~~ 39 (145)
+.+|-..+++++|+++.
T Consensus 18 ~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 35566677888999863
No 260
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=24.16 E-value=1e+02 Score=19.07 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (145)
+|++...+|....+++.+.+|+.+.=
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776678888899999999987654
No 261
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=24.11 E-value=96 Score=18.76 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032224 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (145)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (145)
++|++...+| ...+++++.+|+.+.=..
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 3677766565 678899999998775443
No 262
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=24.04 E-value=89 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (145)
+|+|...++....+++++.+|+.+.=..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 4566655577788999999998876543
No 263
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=23.99 E-value=1.5e+02 Score=19.03 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=19.0
Q ss_pred ceeeeeeeeeEEEcCCCcEEEeccc
Q 032224 96 KKVKLAVLQFYKVDDSGKVQRLRKE 120 (145)
Q Consensus 96 kk~k~~v~k~~~v~~~~~~~~l~~~ 120 (145)
+.+.......|.+. ||+|.+.+..
T Consensus 99 ~~~~~~~~~~~~v~-dGkI~~~r~y 122 (143)
T 3dm8_A 99 RPISVRMALFTQFQ-NGRLTNLRMV 122 (143)
T ss_dssp CEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred CEEEEEEEEEEEEE-CCEEEEEEEE
Confidence 35677888889998 8999988753
No 264
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.98 E-value=42 Score=19.55 Aligned_cols=21 Identities=43% Similarity=0.811 Sum_probs=13.8
Q ss_pred EecccCCCCCCCccEEeceeCCcc
Q 032224 116 RLRKECPNAECGAGTFMASHFDRH 139 (145)
Q Consensus 116 ~l~~~c~~~~c~~g~~ma~h~~~~ 139 (145)
-|...|| .||.-.+.| |--|.
T Consensus 15 TLk~~CP--~CG~~t~~a-hParf 35 (60)
T 2aus_D 15 TLKETCP--VCGEKTKVA-HPPRF 35 (60)
T ss_dssp ESSSBCT--TTCSBCEES-SCCCC
T ss_pred EccccCc--CCCCccCCC-CCCCC
Confidence 3567899 899655554 75443
No 265
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=23.60 E-value=1.1e+02 Score=20.04 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=20.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~L 26 (145)
+|++...+|....+++.+.+||.+.
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~a 47 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEA 47 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777767888889999999998874
No 266
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=23.17 E-value=94 Score=18.70 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 032224 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (145)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~ 28 (145)
+|++...+| ...+++++.+|+.+.=.
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHH
Confidence 567765666 67889999999877543
No 267
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.96 E-value=33 Score=19.96 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=13.5
Q ss_pred EEecccCCCCCCCccEEeceeCCcc
Q 032224 115 QRLRKECPNAECGAGTFMASHFDRH 139 (145)
Q Consensus 115 ~~l~~~c~~~~c~~g~~ma~h~~~~ 139 (145)
--|...|| .||.-. -..|--|.
T Consensus 15 YTLk~~CP--~CG~~T-~~~hParf 36 (60)
T 2apo_B 15 YTLKEICP--KCGEKT-VIPKPPKF 36 (60)
T ss_dssp EESSSBCS--SSCSBC-BCCCCCCC
T ss_pred EeccccCc--CCCCcC-CCCCCCCC
Confidence 33567899 899544 44475443
No 268
>2pw4_A Uncharacterized protein DUF1470; YP_510353.1, protein of unknown function DUF1470, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP} PDB: 3h0n_A*
Probab=22.62 E-value=43 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.595 Sum_probs=18.2
Q ss_pred cccCCCCCCCccEEece--eCCccccc
Q 032224 118 RKECPNAECGAGTFMAS--HFDRHYCE 142 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~--h~~~~~c~ 142 (145)
.+.|.++.|. .+|.=. +..|-||.
T Consensus 145 lr~C~~~~C~-~~f~D~sr~~~rrwCs 170 (188)
T 2pw4_A 145 FGICNAHRCD-RVYFDTSRNGTRQYCS 170 (188)
T ss_dssp EEECCSTTCC-CEEECCSSSCCCCCSS
T ss_pred ccCCCCCCCC-EEEecCCCCCCCCccC
Confidence 4689999998 688754 56777885
No 269
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=22.51 E-value=1.3e+02 Score=17.92 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHhCCCcCceeeeeCCeeccCCCcccccc-ccCCCEEEEEEEe
Q 032224 31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRL 73 (145)
Q Consensus 31 ~~~~gip~~~q~L~~~G~~L~d~~tL~~~g-i~~~sti~l~~~~ 73 (145)
++..|+.+.++.+..+|..+.+...+.-.. ++.+.+|.|.+.-
T Consensus 42 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~R 85 (93)
T 2dls_A 42 AMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLG 85 (93)
T ss_dssp TTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEEE
Confidence 345678888888889998886643222111 3568888887753
No 270
>1uoy_A Bubble protein; exudate protein, sulfur phasing, potential killer toxin; 1.5A {Penicillium brevicompactum} SCOP: g.3.19.1
Probab=22.04 E-value=24 Score=20.32 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=7.6
Q ss_pred eeCCccccc
Q 032224 134 SHFDRHYCE 142 (145)
Q Consensus 134 ~h~~~~~c~ 142 (145)
...|||.||
T Consensus 21 sngdrhfcg 29 (64)
T 1uoy_A 21 GNGDRHFCG 29 (64)
T ss_dssp GGTTCEEEC
T ss_pred cCCCceeec
Confidence 678999987
No 271
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=21.71 E-value=31 Score=24.22 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=12.4
Q ss_pred ccCCCCCCCccEEeceeCCcccccCC
Q 032224 119 KECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 119 ~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
..||++.|.-=|. -...++|.|.+|
T Consensus 44 ~aC~~~~CnKKv~-~~~~g~~~CekC 68 (181)
T 1l1o_C 44 QACPTQDCNKKVI-DQQNGLYRCEKC 68 (181)
T ss_dssp EBCCSTTCCCBCE-EETTTEEEETTT
T ss_pred CCCCchhcCCccc-cCCCCeEECCCC
Confidence 3577555764322 123345666665
No 272
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.42 E-value=1.5e+02 Score=17.98 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHhCCCcCceeeeeCCeeccCCC--ccccccccCCCEEEEEEEecCCc
Q 032224 31 QDKEGIPPDQQRLIFAGKQLEDGR--TLADYNIQKESTLHLVLRLRGGA 77 (145)
Q Consensus 31 ~~~~gip~~~q~L~~~G~~L~d~~--tL~~~gi~~~sti~l~~~~~gg~ 77 (145)
+++.|+.+.++.+..+|..+.+-. .+...--..+..|.|.+. ++|.
T Consensus 42 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~-R~g~ 89 (103)
T 1wf7_A 42 ASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQ-RASA 89 (103)
T ss_dssp HHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEEC-CCSC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE-eCCC
Confidence 455688899999999999887642 111111124667777663 3443
No 273
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.11 E-value=38 Score=23.89 Aligned_cols=22 Identities=27% Similarity=0.538 Sum_probs=14.2
Q ss_pred cCCCCCCCccEEeceeCCcccccCC
Q 032224 120 ECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 120 ~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
.|| .|.--|. -.+.++|.|-+|
T Consensus 44 ACp--~CnKKV~-~~~~g~~~CekC 65 (172)
T 3u50_C 44 RCT--CQGKSVL-KYHGDSFFCESC 65 (172)
T ss_dssp ECT--TSCCCEE-EETTTEEEETTT
T ss_pred hch--hhCCEee-eCCCCeEECCCC
Confidence 388 5876443 345678888776
No 274
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=20.81 E-value=95 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCcCceeeeeCC
Q 032224 24 DNVKAKIQDKEGIPPDQQRLIFAG 47 (145)
Q Consensus 24 ~~LK~~I~~~~gip~~~q~L~~~G 47 (145)
..|-+.+++..|||+++..+.|..
T Consensus 77 ~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 77 KLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEEE
Confidence 455566678889999999887743
No 275
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=20.60 E-value=1.8e+02 Score=18.70 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=32.1
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHHHhCCCcCceeeeeC
Q 032224 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (145)
Q Consensus 3 I~Vk~~-~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q~L~~~ 46 (145)
|.|+.. .|+..-|.++..-+..+|.+++.+.+|-+. -|.|-
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~ 50 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYT 50 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEEC
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEe
Confidence 445543 577889999999999999999999999743 45554
No 276
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=20.45 E-value=32 Score=24.10 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=14.6
Q ss_pred cccCCCCCCCccEEeceeCCccccc
Q 032224 118 RKECPNAECGAGTFMASHFDRHYCE 142 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h~~~~~c~ 142 (145)
-.-|| .|+ | .+......++|.
T Consensus 78 l~~CP--~C~-G-~l~y~~~~Y~C~ 98 (160)
T 2riq_A 78 LLPCE--ECS-G-QLVFKSDAYYCT 98 (160)
T ss_dssp ECCCT--TTC-C-CEEEETTEEEEC
T ss_pred CCCCC--CCC-C-EEEEeCCeEEEC
Confidence 35699 898 7 344566888884
No 277
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=20.38 E-value=1.3e+02 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=26.1
Q ss_pred EEEeCCCCEEEEEEcCCCcHHHHHHHHHHHh
Q 032224 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34 (145)
Q Consensus 4 ~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~ 34 (145)
.+=.++|-.+.++++.++|+.++|+++....
T Consensus 46 d~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a 76 (1091)
T 3hhm_A 46 ECLLPNGMIVTLECLREATLITIKHELFKEA 76 (1091)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEEcCCCeEEEEEecCCCcHHHHHHHHHHHH
Confidence 3345688899999999999999999997664
No 278
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=20.31 E-value=2.2e+02 Score=19.72 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=29.7
Q ss_pred EEEEEeCCC--CE-EEEEEcCCCcHHHHHHHHHHHhCCCcCce
Q 032224 2 QIFVKTLTG--KT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (145)
Q Consensus 2 ~I~Vk~~~g--~~-~~l~V~~~~TV~~LK~~I~~~~gip~~~q 41 (145)
+|.|...+- .. ..|.|+.+.|+.+|=..|+..+|..-...
T Consensus 10 ~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~~~HL 52 (188)
T 2i1s_A 10 HLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYHL 52 (188)
T ss_dssp EEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCCCCSC
T ss_pred EEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCCCCEe
Confidence 455544422 22 56899999999999999999999876544
No 279
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=20.20 E-value=49 Score=22.26 Aligned_cols=25 Identities=12% Similarity=0.269 Sum_probs=14.9
Q ss_pred cccCCCCCCCccEEecee-----CCcccccCCC
Q 032224 118 RKECPNAECGAGTFMASH-----FDRHYCEFVP 145 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h-----~~~~~c~~~~ 145 (145)
-+-|| .||. .....- ..+++|-+|+
T Consensus 24 ~~FCP--eCgN-mL~pked~~~~~l~~~CrtCg 53 (133)
T 3qt1_I 24 FRFCR--DCNN-MLYPREDKENNRLLFECRTCS 53 (133)
T ss_dssp CCBCT--TTCC-BCBCCBCTTTCCBCCBCSSSC
T ss_pred CeeCC--CCCC-EeeECccCCCceeEEECCCCC
Confidence 36799 8986 222221 2268888774
No 280
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=20.14 E-value=46 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=17.8
Q ss_pred cccCCCCCCCccEEeceeCCcccccCC
Q 032224 118 RKECPNAECGAGTFMASHFDRHYCEFV 144 (145)
Q Consensus 118 ~~~c~~~~c~~g~~ma~h~~~~~c~~~ 144 (145)
.+.|| .||.-..+....-|.+|..|
T Consensus 107 ~~fC~--~CG~~~~~~~~~~~~~C~~C 131 (269)
T 1vk6_A 107 HKYCG--YCGHEMYPSKTEWAMLCSHC 131 (269)
T ss_dssp TSBCT--TTCCBEEECSSSSCEEESSS
T ss_pred CCccc--cCCCcCccCCCceeeeCCCC
Confidence 47899 89887766655667777654
No 281
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=20.04 E-value=1.4e+02 Score=17.42 Aligned_cols=43 Identities=7% Similarity=-0.041 Sum_probs=29.0
Q ss_pred HHHhCCCcCceeeeeCCeeccCCC--ccccccccCCCEEEEEEEe
Q 032224 31 QDKEGIPPDQQRLIFAGKQLEDGR--TLADYNIQKESTLHLVLRL 73 (145)
Q Consensus 31 ~~~~gip~~~q~L~~~G~~L~d~~--tL~~~gi~~~sti~l~~~~ 73 (145)
++..|+.+.++.+..+|..+.+.. .+..+=-..+..+.|.+.-
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R 84 (91)
T 2pkt_A 40 AALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVAR 84 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 445689999999999999887654 2222211257788887753
Done!