Query 032225
Match_columns 145
No_of_seqs 108 out of 169
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eop_A Thymocyte nuclear prote 76.3 1.2 3.9E-05 35.3 2.0 19 41-61 86-104 (176)
2 2ar1_A Hypothetical protein; s 74.9 1.3 4.3E-05 34.9 1.9 18 41-60 93-110 (172)
3 2eve_A Hypothetical protein ps 74.8 1.3 4.4E-05 34.4 1.9 18 41-60 75-92 (157)
4 1kil_E Complexin I snare-compl 55.2 23 0.0008 22.6 4.5 18 122-139 31-48 (49)
5 3rk3_E Complexin-1; snare prot 42.4 44 0.0015 22.2 4.5 20 122-141 34-53 (63)
6 3d6r_B NS1, NS1A, non-structur 30.0 17 0.00059 27.9 1.1 21 73-99 116-136 (158)
7 1l4a_E Synaphin A; snare, snar 28.1 54 0.0018 22.7 3.2 20 122-141 38-57 (79)
8 3lcn_C MRNA transport factor G 27.6 49 0.0017 19.0 2.5 21 107-127 3-23 (29)
9 3rvc_A NS1, NS1A, non-structur 24.7 21 0.00073 27.2 0.8 20 74-99 111-130 (152)
10 3f5t_A NS1, nonstructural prot 19.6 35 0.0012 27.2 1.1 20 74-99 184-203 (215)
No 1
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=76.31 E-value=1.2 Score=35.34 Aligned_cols=19 Identities=21% Similarity=0.599 Sum_probs=14.8
Q ss_pred cCCCCCCCCCCCCcccccCCC
Q 032225 41 NLDENSAYYDPKIRSMREDLN 61 (145)
Q Consensus 41 NLd~nsa~YDPKSRsmRd~p~ 61 (145)
..|++|.||||||-. ++|-
T Consensus 86 ~fDp~s~YyDpkS~~--~~pr 104 (176)
T 3eop_A 86 QFEKNNPHYDPSSKE--DNPK 104 (176)
T ss_dssp GTCTTSTTCCTTCCT--TSCS
T ss_pred ccCCCCCCCCccCcC--CCCC
Confidence 379999999999854 5554
No 2
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=74.90 E-value=1.3 Score=34.87 Aligned_cols=18 Identities=44% Similarity=0.757 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCCCcccccCC
Q 032225 41 NLDENSAYYDPKIRSMREDL 60 (145)
Q Consensus 41 NLd~nsa~YDPKSRsmRd~p 60 (145)
..|++|.||||||.. ++|
T Consensus 93 ~fdp~s~YyDpks~~--~~p 110 (172)
T 2ar1_A 93 ALDKTSEYFDPKATK--EKN 110 (172)
T ss_dssp GGCTTSTTCCTTCCS--SCC
T ss_pred cccccCcccCcccCC--CCC
Confidence 469999999999874 555
No 3
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=74.81 E-value=1.3 Score=34.39 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCCCcccccCC
Q 032225 41 NLDENSAYYDPKIRSMREDL 60 (145)
Q Consensus 41 NLd~nsa~YDPKSRsmRd~p 60 (145)
..|++|.||||||-. ++|
T Consensus 75 ~fdp~s~YyDpks~~--~~p 92 (157)
T 2eve_A 75 ALDPDSHYHDAKATT--EKN 92 (157)
T ss_dssp GGCTTSTTCCTTCCS--SCC
T ss_pred cccccCcCcCcccCC--CCC
Confidence 569999999999874 555
No 4
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=55.19 E-value=23 Score=22.60 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 032225 122 IEEKKRLCKKEKIMEKYG 139 (145)
Q Consensus 122 kke~~k~~~k~~ilekYG 139 (145)
+-+...+..+|.|-+|||
T Consensus 31 kmE~eRE~mRq~IRdKY~ 48 (49)
T 1kil_E 31 KMEAEREVMRQGIRDKYG 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 334667788999999998
No 5
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=42.37 E-value=44 Score=22.24 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhcCc
Q 032225 122 IEEKKRLCKKEKIMEKYGNA 141 (145)
Q Consensus 122 kke~~k~~~k~~ilekYGg~ 141 (145)
+-++..+..+|.|-+|||-.
T Consensus 34 kME~ERE~mRQ~IRdKY~ik 53 (63)
T 3rk3_E 34 KMEAEREAVRQGIRDKYGIK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34566778899999999965
No 6
>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3oa9_A
Probab=30.04 E-value=17 Score=27.88 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=11.8
Q ss_pred CCCceeccccHHHHHHHHHHHHHHhcC
Q 032225 73 GYNRYRMGGQALEWKQVNIHAWKASGR 99 (145)
Q Consensus 73 gdnF~R~sGe~~e~~~lq~fAWea~~k 99 (145)
.+|-||.| +.+|+|||-....
T Consensus 116 N~Ntvrvs------e~lqRfawrs~~E 136 (158)
T 3d6r_B 116 NDNSIRAS------ENIQRFAWGIRDE 136 (158)
T ss_dssp TTCEEEEC------HHHHHHC------
T ss_pred cCceeehh------HHHHHHhhhccCc
Confidence 36777776 6899999998865
No 7
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=28.06 E-value=54 Score=22.71 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcCc
Q 032225 122 IEEKKRLCKKEKIMEKYGNA 141 (145)
Q Consensus 122 kke~~k~~~k~~ilekYGg~ 141 (145)
+-+...+..+|.|-+|||-.
T Consensus 38 kmE~ERE~mRq~IRdKY~ik 57 (79)
T 1l4a_E 38 KMEEEREEMRQTIRDKYGLK 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 45577788899999999964
No 8
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=27.58 E-value=49 Score=18.96 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=15.0
Q ss_pred cCcCHHHHHhhhHHHHHHHHH
Q 032225 107 AALTQAELHYRWEKDIEEKKR 127 (145)
Q Consensus 107 AnPT~~ell~k~~~~kke~~k 127 (145)
-.|+++++|.|+.++.++-+.
T Consensus 3 ~~~sKm~lLKKKIEEQr~i~~ 23 (29)
T 3lcn_C 3 DTASKMKLLKKKIEEQREILQ 23 (29)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 457889999888877665443
No 9
>3rvc_A NS1, NS1A, non-structural protein 1; interferon antagonist, protein binding; 1.80A {Influenza a virus} PDB: 3o9q_A 3o9r_A 3l4q_A 3o9t_A* 3o9s_A* 3o9u_B 2gx9_A 3p38_A 3p39_A 3p31_A 2kkz_A 2rhk_A 3kwg_A 3kwi_A 3m5r_A 3ee9_A 3ee8_A
Probab=24.65 E-value=21 Score=27.15 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=12.3
Q ss_pred CCceeccccHHHHHHHHHHHHHHhcC
Q 032225 74 YNRYRMGGQALEWKQVNIHAWKASGR 99 (145)
Q Consensus 74 dnF~R~sGe~~e~~~lq~fAWea~~k 99 (145)
+|-||.| +.+|+|||-....
T Consensus 111 ~ntvrvs------e~lqrfaw~~~~e 130 (152)
T 3rvc_A 111 DNTVRVS------ETLQRFAWRSSNE 130 (152)
T ss_dssp TCEEEEC------HHHHHHTC-----
T ss_pred CceeeHH------HHHHHHHhcccCc
Confidence 6777776 6899999988765
No 10
>3f5t_A NS1, nonstructural protein 1; H5N1, HOST-virus interaction, interferon ANT system evasion, nucleus, RNA-binding; 2.70A {Influenza virus}
Probab=19.63 E-value=35 Score=27.19 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=11.3
Q ss_pred CCceeccccHHHHHHHHHHHHHHhcC
Q 032225 74 YNRYRMGGQALEWKQVNIHAWKASGR 99 (145)
Q Consensus 74 dnF~R~sGe~~e~~~lq~fAWea~~k 99 (145)
+|-||.| +.+|+|||-....
T Consensus 184 dntvrvs------e~lqrfawrs~~e 203 (215)
T 3f5t_A 184 DNTVRVT------ETIQRFAWRNSDE 203 (215)
T ss_dssp TCEEEEC------HHHHHHC------
T ss_pred Cceeehh------HHHHHHhhcccCC
Confidence 6777776 6799999988755
Done!