Query 032225
Match_columns 145
No_of_seqs 108 out of 169
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 18:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vyda_ a.3.1.1 (A:) Cytochrom 57.9 1.5 0.00011 29.3 0.9 23 21-43 93-115 (116)
2 d2evea1 b.122.1.8 (A:2-149) Hy 54.0 2.3 0.00017 30.8 1.4 14 42-55 75-88 (148)
3 d1cota_ a.3.1.1 (A:) Cytochrom 53.6 2.6 0.00019 27.8 1.6 26 20-45 95-120 (121)
4 d1v5va1 b.44.2.1 (A:313-401) G 38.0 6.5 0.00047 24.9 1.6 12 47-58 76-88 (89)
5 d2ar1a1 b.122.1.8 (A:7-163) Hy 37.2 5.6 0.00041 28.6 1.3 14 41-54 79-92 (157)
6 d2gx9a1 d.299.1.1 (A:79-205) N 27.0 8.7 0.00063 26.9 0.8 17 73-95 110-126 (127)
7 d1bf2a3 c.1.8.1 (A:163-637) Is 21.1 59 0.0043 24.2 4.8 66 36-101 49-125 (475)
8 d1co6a_ a.3.1.1 (A:) Cytochrom 17.5 23 0.0017 23.1 1.4 25 22-46 77-104 (107)
9 d2csba4 a.60.2.4 (A:465-519) T 17.0 36 0.0026 20.2 2.0 13 129-141 15-27 (55)
10 d2a1ba1 d.58.56.1 (A:2-102) Ca 16.8 47 0.0034 21.7 2.9 42 72-113 38-84 (101)
No 1
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=57.93 E-value=1.5 Score=29.32 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.3
Q ss_pred CCCccccccccccChHHHhhcCC
Q 032225 21 GITGTNRDLRIREDIPKYLLNLD 43 (145)
Q Consensus 21 ~~~~t~rnLRiREDtAkYL~NLd 43 (145)
|+....+.++.|||+.+||..|.
T Consensus 93 ~t~M~~~g~~d~~dliAYL~sL~ 115 (116)
T d1vyda_ 93 KTEMAFKLAKGGEDVAAYLASVV 115 (116)
T ss_dssp CCSCCCCCSSCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHhc
Confidence 55666788999999999999885
No 2
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=53.97 E-value=2.3 Score=30.75 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCcc
Q 032225 42 LDENSAYYDPKIRS 55 (145)
Q Consensus 42 Ld~nsa~YDPKSRs 55 (145)
.|++|-||||||..
T Consensus 75 ~d~~s~y~D~ks~~ 88 (148)
T d2evea1 75 LDPDSHYHDAKATT 88 (148)
T ss_dssp GCTTSTTCCTTCCS
T ss_pred ccCCCceecccccc
Confidence 48999999999864
No 3
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=53.60 E-value=2.6 Score=27.84 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=21.7
Q ss_pred CCCCccccccccccChHHHhhcCCCC
Q 032225 20 SGITGTNRDLRIREDIPKYLLNLDEN 45 (145)
Q Consensus 20 ~~~~~t~rnLRiREDtAkYL~NLd~n 45 (145)
.+++...++...|+|+.+||..+.++
T Consensus 95 ~~t~M~~~~~~d~~dliAYLks~~~~ 120 (121)
T d1cota_ 95 AKTKMTFKMGKNQADVVAFLAQNSPD 120 (121)
T ss_dssp CCCSCCCCCCSCHHHHHHHHHHTCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 35666778899999999999998776
No 4
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=38.01 E-value=6.5 Score=24.91 Aligned_cols=12 Identities=50% Similarity=0.966 Sum_probs=10.3
Q ss_pred CCCCCC-Cccccc
Q 032225 47 AYYDPK-IRSMRE 58 (145)
Q Consensus 47 a~YDPK-SRsmRd 58 (145)
.+|||+ .|+||+
T Consensus 76 PfyDp~~~~~~~~ 88 (89)
T d1v5va1 76 PFYDPKKYGLFRE 88 (89)
T ss_dssp CSSCTTTSSTTCC
T ss_pred CCcCCcccEEeec
Confidence 699998 888886
No 5
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}
Probab=37.19 E-value=5.6 Score=28.60 Aligned_cols=14 Identities=50% Similarity=0.945 Sum_probs=11.6
Q ss_pred cCCCCCCCCCCCCc
Q 032225 41 NLDENSAYYDPKIR 54 (145)
Q Consensus 41 NLd~nsa~YDPKSR 54 (145)
-.|++|-||||||-
T Consensus 79 ~~d~~s~y~Dpks~ 92 (157)
T d2ar1a1 79 ALDKTSEYFDPKAT 92 (157)
T ss_dssp GGCTTSTTCCTTCC
T ss_pred cccCCccccCcccc
Confidence 36889999999875
No 6
>d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal domain {Influenza A virus [TaxId: 11320]}
Probab=27.00 E-value=8.7 Score=26.87 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=13.0
Q ss_pred CCCceeccccHHHHHHHHHHHHH
Q 032225 73 GYNRYRMGGQALEWKQVNIHAWK 95 (145)
Q Consensus 73 gdnF~R~sGe~~e~~~lq~fAWe 95 (145)
.||-||.| +.+|+|||-
T Consensus 110 ndntvrvs------e~lqRfaw~ 126 (127)
T d2gx9a1 110 NDNTVRVS------ETLQRFAWR 126 (127)
T ss_dssp TTCEEEEC------HHHHHHTCC
T ss_pred cCceeeHH------HHHHHHhhc
Confidence 36778877 578999993
No 7
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]}
Probab=21.09 E-value=59 Score=24.19 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHHhhcCCCCCCCCCC--CCcccccCCCCCCCCC--cccccCCCceeccccH-------HHHHHHHHHHHHHhcCCC
Q 032225 36 PKYLLNLDENSAYYDP--KIRSMREDLNPDDNPN--EKFYAGYNRYRMGGQA-------LEWKQVNIHAWKASGRGQ 101 (145)
Q Consensus 36 AkYL~NLd~nsa~YDP--KSRsmRd~p~~~~~~~--~~~fagdnF~R~sGe~-------~e~~~lq~fAWea~~kG~ 101 (145)
--||.+|-.|-.+-=| .+.........+.... -.=|...+|..+.... ...+.++.|+=+++++|+
T Consensus 49 Ldyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GI 125 (475)
T d1bf2a3 49 ASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGI 125 (475)
T ss_dssp HHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCc
Confidence 3599999999776666 2332222211111111 1226667777765433 667788999999999996
No 8
>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=17.54 E-value=23 Score=23.11 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=16.6
Q ss_pred CCccccccc---cccChHHHhhcCCCCC
Q 032225 22 ITGTNRDLR---IREDIPKYLLNLDENS 46 (145)
Q Consensus 22 ~~~t~rnLR---iREDtAkYL~NLd~ns 46 (145)
+++..+.|+ .|.|+.+||..|+.+.
T Consensus 77 t~M~~~gl~~~~d~~~liAYL~~l~~~~ 104 (107)
T d1co6a_ 77 TKMIFAGVKDEQKVSDLIAYIKQFNADG 104 (107)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHTBCTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcccc
Confidence 333444454 4567889999998764
No 9
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=16.95 E-value=36 Score=20.20 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCc
Q 032225 129 CKKEKIMEKYGNA 141 (145)
Q Consensus 129 ~~k~~ilekYGg~ 141 (145)
+.-+.||.||||-
T Consensus 15 eraerllkkyggy 27 (55)
T d2csba4 15 ERAERLLKKYGGY 27 (55)
T ss_dssp HHHHHHHHHHTSH
T ss_pred HHHHHHHHHhcCh
Confidence 3456799999984
No 10
>d2a1ba1 d.58.56.1 (A:2-102) Carboxysome shell protein CcmK2 {Synechocystis sp. PCC 6803 [TaxId: 1148]}
Probab=16.82 E-value=47 Score=21.70 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=33.9
Q ss_pred cCCCceeccccHHHHHHHHHHHHHHhcC---C--CccccccCcCHHH
Q 032225 72 AGYNRYRMGGQALEWKQVNIHAWKASGR---G--QDIHPEAALTQAE 113 (145)
Q Consensus 72 agdnF~R~sGe~~e~~~lq~fAWea~~k---G--~~~hl~AnPT~~e 113 (145)
.|.-++-++||....+..=..+-+++++ | ++.+++++|...-
T Consensus 38 ~Gk~~v~v~GdvaaV~aAveag~~~a~~~~~g~~v~~~VIp~p~~~v 84 (101)
T d2a1ba1 38 SGRVTVIVRGDVSGVQASVSAGIEAANRVNGGEVLSTHIIARPHENL 84 (101)
T ss_dssp SSEEEEEEESCHHHHHHHHHHHHHHHHTSBTCEEEEEEEESSCCHHH
T ss_pred CeEEEEEEEeeHHHHHHHHHHHHHHHHhhcCCcEEEEEEECCCCHhH
Confidence 3555788999999999988888887765 4 4799999998653
Done!