BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032227
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZB1|LOL1_ARATH Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1
Length = 154
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/132 (92%), Positives = 126/132 (95%), Gaps = 3/132 (2%)
Query: 16 TPPANGA---QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT 72
TPPANG+ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT
Sbjct: 22 TPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT 81
Query: 73 LLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAV 132
LLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNC MLLMYQYGARSVKCAVCNFVT+V
Sbjct: 82 LLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSV 141
Query: 133 GASTSTTEQKFN 144
G STSTT+ KFN
Sbjct: 142 GGSTSTTDSKFN 153
>sp|Q0J7V9|LSD1_ORYSJ Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1
Length = 184
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/141 (88%), Positives = 132/141 (93%), Gaps = 1/141 (0%)
Query: 1 MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 60
MPVPLAPYPTPP P+TP NGAQSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGT
Sbjct: 42 MPVPLAPYPTPPVPFTP-PNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGT 100
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 120
EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHVNCGNCRMLLMYQYGARS
Sbjct: 101 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARS 160
Query: 121 VKCAVCNFVTAVGASTSTTEQ 141
VKCAVCNFVT+VGAS T ++
Sbjct: 161 VKCAVCNFVTSVGASPGTDQK 181
>sp|Q2QMB3|LOL2_ORYSJ Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1
Length = 172
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV-PPPGTEMAQLVCGGCHTLLMYIRGAT 81
QSQ+VC GCRN+LLYP GA SVCCAVC+AV++ P PG ++A L+CGGC TLLMY R AT
Sbjct: 2 QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61
Query: 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGAST 136
SV+CSCC TVNL + +AH+NCG C+ +LMY YGA SVKCA+CNF+T G +T
Sbjct: 62 SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116
>sp|Q6ASS2|LOL3_ORYSJ Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1
Length = 186
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 87/116 (75%), Gaps = 2/116 (1%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 80
QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP EMA L+CGGC TLLMY R A
Sbjct: 2 QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61
Query: 81 TSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGAST 136
+V+CSCC TVNL N +AHV+CG CR LMY YGA SVKCA+C+++T G +T
Sbjct: 62 DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNT 117
>sp|P94077|LSD1_ARATH Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1
Length = 189
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 88/124 (70%), Gaps = 11/124 (8%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
Q QLVC GCRNLL+YP GA++V CA+CN + VPPP +MA ++CGGC T+LMY RGA
Sbjct: 7 QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66
Query: 81 TSVQCSCCHTVNLA-LEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTA 131
+SV+CSCC T NL +NQVAH +NCG+CR LMY YGA SVKCAVC FVT
Sbjct: 67 SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126
Query: 132 VGAS 135
V S
Sbjct: 127 VNMS 130
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 64 QLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEA---NQVAHVNCGNCRMLLMYQYGARS 120
QLVC GC LLMY RGA++V+C+ C+T+N+ + +AH+ CG CR +LMY GA S
Sbjct: 9 QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASS 68
Query: 121 VKCAVCNFVTAVGASTS 137
V+C+ C V A ++
Sbjct: 69 VRCSCCQTTNLVPAHSN 85
>sp|Q84UR0|LOL4_ORYSJ Protein LOL4 OS=Oryza sativa subsp. japonica GN=LOL4 PE=2 SV=1
Length = 147
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT-EMAQLVCGGCHTLLMYIRGAT 81
Q QL+CSGCR ++ Y G VCC CN +TAV P +M++L+C GC TLL Y RGA+
Sbjct: 2 QDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGAS 61
Query: 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAV 132
+++C C+ +N ANQ+AH+ CG CR LM+ GA +V+CA C +V V
Sbjct: 62 NIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHV 112
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 17 PPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMY 76
P A S+L+CSGC LL Y GA+++ C CN + + ++A L CG C T LM+
Sbjct: 36 PSAVADMSELICSGCPTLLFYNRGASNIRCPSCNRLNSTRS-ANQIAHLTCGQCRTTLMH 94
Query: 77 IRGATSVQCSCCHTVNLALEA 97
GA++VQC+ C VN +A
Sbjct: 95 PPGASTVQCATCRYVNHVRDA 115
>sp|O65426|LOL2_ARATH Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=2 SV=1
Length = 155
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%)
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 120
E AQ+VCG C LL Y+RG+ V+CS C TVNL LEANQV VNC NC++LLMY YGA +
Sbjct: 57 EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPA 116
Query: 121 VKCAVCNFVTAVGASTS 137
V+C+ CN VT + +
Sbjct: 117 VRCSSCNSVTDISENNK 133
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
++Q+VC CR LL Y G+ V C+ C V V ++ Q+ C C LLMY GA +
Sbjct: 58 KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLE-ANQVGQVNCNNCKLLLMYPYGAPA 116
Query: 83 VQCSCCHTVNLALEANQ 99
V+CS C++V E N+
Sbjct: 117 VRCSSCNSVTDISENNK 133
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 25 QLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP-----PPGTEM 62
Q+ C+ C+ LL+YP GA +V C+ CN+VT + PP +E
Sbjct: 98 QVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPPWSEQ 140
>sp|Q704V3|LOL5_ORYSJ Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1
Length = 163
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 120
E+ Q+VCG C LL Y RGA V C+CC T+N LEA++V V+CG+C LLMY +GA +
Sbjct: 67 EVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGHCATLLMYPFGAPA 126
Query: 121 VKCAVCNFVTAVG 133
VKC++C FVT +G
Sbjct: 127 VKCSLCLFVTEIG 139
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 20 NGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
N Q+VC CR LL Y GA V C C + V E+ ++ CG C TLLMY G
Sbjct: 65 NKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYV-LEAHEVGKVHCGHCATLLMYPFG 123
Query: 80 ATSVQCSCCHTVNLALEAN 98
A +V+CS C V E N
Sbjct: 124 APAVKCSLCLFVTEIGERN 142
>sp|Q69UP7|LOL1_ORYSJ Protein LOL1 OS=Oryza sativa subsp. japonica GN=LOL1 PE=2 SV=1
Length = 147
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 40/54 (74%)
Query: 5 LAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 58
+A P P + + GAQSQLVCSGCRNLL+YP GATS+CCAVC VTAVP P
Sbjct: 27 MASTPWSSMPPSSHSLGAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAP 80
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 53 TAVPPPGTEM---AQLVCGGCHTLLMYIRGATSVQCSCCHTV 91
+++PP + +QLVC GC LLMY GATS+ C+ C TV
Sbjct: 33 SSMPPSSHSLGAQSQLVCSGCRNLLMYPAGATSICCAVCGTV 74
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 20/30 (66%)
Query: 105 CGNCRMLLMYQYGARSVKCAVCNFVTAVGA 134
C CR LLMY GA S+ CAVC VTAV A
Sbjct: 50 CSGCRNLLMYPAGATSICCAVCGTVTAVPA 79
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
Length = 367
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 8 YPTPPAP-YTPPANGAQSQLV-CSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 60
YP PP+ Y PP LV CSGCR L P GA S+ CA+C AVT + P T
Sbjct: 2 YPPPPSSIYAPP------MLVNCSGCRTPLQLPSGARSIRCALCQAVTHIADPRT 50
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 103 VNCGNCRMLLMYQYGARSVKCAVCNFVTAV 132
VNC CR L GARS++CA+C VT +
Sbjct: 16 VNCSGCRTPLQLPSGARSIRCALCQAVTHI 45
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 28 CSGCRNLLLYPVGATSVCCAVCNAVTAVPP 57
CS CR L P GAT + CA+C+A T + P
Sbjct: 7 CSSCRTPLHLPPGATRIRCAICHAFTLIAP 36
>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1
Length = 5085
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 46/133 (34%), Gaps = 26/133 (19%)
Query: 2 PVPLAPYPTPPAPYTPPANGAQSQLVCSG---CRNLLLYPVGATSVCCAVCNAVTAVP-- 56
P P P P P P P A Q Q + + L A ++ VT P
Sbjct: 445 PQPQPPTPAKPQPQPPTATKPQPQPPTATKPHHQQPGLAKPSAQQPTKSISQTVTGRPLQ 504
Query: 57 PPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVN-CGNCRMLLMYQ 115
PP T AQ +G + C C+T L L + A+ N C C
Sbjct: 505 PPPTSAAQTPA----------QGLSKTICPLCNTTELLLHIPEKANFNTCTEC------- 547
Query: 116 YGARSVKCAVCNF 128
+S C++C F
Sbjct: 548 ---QSTVCSLCGF 557
>sp|Q7ZX22|WDR24_XENLA WD repeat-containing protein 24 OS=Xenopus laevis GN=wdr24 PE=2
SV=1
Length = 780
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAV 132
++ S C ++N +A+ HVNC NC+ M G +C C + AV
Sbjct: 687 IKLSTCSSINCLNQASTTLHVNCSNCKR-PMSNKGWICDRCRQCASMCAV 735
>sp|Q5ZMV9|WDR24_CHICK WD repeat-containing protein 24 OS=Gallus gallus GN=WDR24 PE=2 SV=1
Length = 705
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAV 132
++ S C +N +A+ H+NC NC+ M G +C C + AV
Sbjct: 612 IKLSTCRAINCLNQASTTLHINCSNCKR-PMSNRGWICDRCRQCASMCAV 660
>sp|Q86T03|TM55B_HUMAN Transmembrane protein 55B OS=Homo sapiens GN=TMEM55B PE=1 SV=1
Length = 277
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 9 PTPPAPYTPPANGAQSQLVCSGCRNLLLY--PVGATSVCCAVCNAVTAVP--PPGTEMAQ 64
P P +P T P +G+ + C C++L+ + V C VCN T + PPG + +
Sbjct: 65 PPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVR 124
Query: 65 LVCGGCHTLLMYIRGATSVQCS---CCHTVN--------LALEANQVA-HVNCGNCRMLL 112
C+ LL+ + + C C +N L+ E + V CG+C+
Sbjct: 125 C---PCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNTF 181
Query: 113 MY-QYGARSV-KCAVCNFVTAVG 133
++ ++ R++ +C C V+++G
Sbjct: 182 LWTEFTDRTLARCPHCRKVSSIG 204
>sp|Q32PR0|T55BA_DANRE Transmembrane protein 55B-A OS=Danio rerio GN=tmem55ba PE=2 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 2 PVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLY--PVGATSVCCAVCNAVTAVP--P 57
PV L+ P P +P T P +G+ + C C++L+ + V C VCN T + P
Sbjct: 51 PVLLSENPPPYSPLTSPESGSAPVISCRVCQSLISVEGKIHQHVVKCGVCNEATPIKNAP 110
Query: 58 PGTEMAQLVCGGCHTLLMYIRGATSVQCS---CCHTVNLA---------LEANQVAHVNC 105
G + + C+ LL+ + + C C +NL A V+C
Sbjct: 111 AGKKYVRCP---CNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPASPDPQPAGARVSC 167
Query: 106 GNCRMLLMY-QYGARSV-KCAVCNFVTAVG 133
G+C ++ ++ R++ +C C V+++G
Sbjct: 168 GHCSNTFLWTEFTDRTLARCPHCRKVSSIG 197
>sp|Q4R6W2|TM55B_MACFA Transmembrane protein 55B OS=Macaca fascicularis GN=TMEM55B PE=2
SV=1
Length = 284
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 9 PTPPAPYTPPANGAQSQLVCSGCRNLLLY--PVGATSVCCAVCNAVTAVP--PPGTEMAQ 64
P P +P T P +G+ + C C++L+ + V C VCN T + PPG + +
Sbjct: 72 PPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVR 131
Query: 65 LVCGGCHTLLMYIRGATSVQCS---CCHTVN--------LALEANQVA-HVNCGNCRMLL 112
C+ LL+ + + C C +N L+ E + V CG+C+
Sbjct: 132 C---PCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNTF 188
Query: 113 MY-QYGARSV-KCAVCNFVTAVG 133
++ ++ R++ +C C V+++G
Sbjct: 189 LWTEFTDRTLARCPHCRKVSSIG 211
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40
PE=1 SV=1
Length = 1002
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGA 134
+ C CC+T + HV C C + +Y AR KC CN A GA
Sbjct: 947 LTCPCCNTRKKDAVLTKCFHVFCFEC---VRGRYEARQRKCPKCN--AAFGA 993
>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2
SV=1
Length = 1001
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGA 134
+ C CC+T + HV C C + +Y AR KC CN A GA
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFEC---VRGRYEARQRKCPKCN--AAFGA 992
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2
SV=2
Length = 1001
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGA 134
+ C CC+T + HV C C + +Y AR KC CN A GA
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFEC---VRGRYEARQRKCPKCN--AAFGA 992
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGA 134
+ C CC+T + HV C C + +Y AR KC CN A GA
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFEC---VRGRYEARQRKCPKCN--AAFGA 992
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1
SV=4
Length = 1001
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 83 VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGA 134
+ C CC+T + HV C C + +Y AR KC CN A GA
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFEC---VRGRYEARQRKCPKCN--AAFGA 992
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.133 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,932,217
Number of Sequences: 539616
Number of extensions: 1858434
Number of successful extensions: 14062
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 13849
Number of HSP's gapped (non-prelim): 182
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)