Query 032227
Match_columns 145
No_of_seqs 100 out of 132
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 18:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qxf_A GR2, 30S ribosomal prot 93.9 0.04 1.4E-06 37.9 2.9 41 81-122 6-46 (66)
2 3j20_W 30S ribosomal protein S 93.4 0.054 1.9E-06 36.9 2.9 39 82-121 15-53 (63)
3 2xzm_6 RPS27E; ribosome, trans 93.2 0.11 3.8E-06 36.9 4.3 45 82-127 32-76 (81)
4 3u5c_b RP61, YS20, 40S ribosom 90.8 0.11 3.7E-06 37.0 2.0 44 82-126 34-77 (82)
5 1qxf_A GR2, 30S ribosomal prot 90.4 0.15 5.1E-06 35.0 2.4 39 43-83 7-45 (66)
6 3j20_W 30S ribosomal protein S 89.5 0.2 6.7E-06 34.1 2.3 37 43-81 15-51 (63)
7 2xzm_6 RPS27E; ribosome, trans 89.0 0.22 7.6E-06 35.3 2.4 38 43-82 32-69 (81)
8 3iz6_X 40S ribosomal protein S 87.3 0.14 4.9E-06 36.7 0.5 44 82-126 36-79 (86)
9 3u5c_b RP61, YS20, 40S ribosom 85.0 0.26 9E-06 35.0 0.9 39 43-83 34-72 (82)
10 3iz6_X 40S ribosomal protein S 81.8 0.32 1.1E-05 34.9 0.3 38 43-82 36-73 (86)
11 1gh9_A 8.3 kDa protein (gene M 71.4 7.1 0.00024 26.5 4.7 35 101-137 3-37 (71)
12 2yrc_A Protein transport prote 70.4 3.4 0.00012 27.0 2.8 40 20-59 4-49 (59)
13 2ppt_A Thioredoxin-2; thiredox 63.1 1.4 4.9E-05 31.3 -0.1 31 82-112 14-44 (155)
14 1wii_A Hypothetical UPF0222 pr 58.6 11 0.00037 26.4 3.8 40 81-120 22-65 (85)
15 1pft_A TFIIB, PFTFIIBN; N-term 55.2 7.7 0.00026 23.5 2.3 27 104-130 7-34 (50)
16 1pft_A TFIIB, PFTFIIBN; N-term 54.9 9.9 0.00034 23.0 2.7 28 25-52 5-33 (50)
17 2yrc_A Protein transport prote 53.8 7.7 0.00026 25.3 2.2 42 99-140 6-54 (59)
18 3p2a_A Thioredoxin 2, putative 49.2 3.9 0.00013 28.0 0.2 30 82-111 5-34 (148)
19 2ppt_A Thioredoxin-2; thiredox 47.8 3.9 0.00013 29.0 0.0 31 43-74 14-44 (155)
20 2dkt_A Ring finger and CHY zin 45.6 57 0.0019 24.8 6.2 83 42-133 26-128 (143)
21 1gh9_A 8.3 kDa protein (gene M 45.5 19 0.00065 24.4 3.2 32 62-95 2-33 (71)
22 1bor_A Transcription factor PM 45.2 5.3 0.00018 24.3 0.4 27 101-134 25-51 (56)
23 1vq8_Z 50S ribosomal protein L 44.8 7.5 0.00026 27.0 1.1 36 98-133 23-58 (83)
24 1twf_I B12.6, DNA-directed RNA 41.9 15 0.00052 26.4 2.4 30 104-133 6-39 (122)
25 3efo_B SEC24 related gene fami 39.8 19 0.00064 33.3 3.2 36 23-58 96-135 (770)
26 1rfh_A RAS association (ralgds 39.8 22 0.00075 22.4 2.7 25 102-130 22-46 (59)
27 1wii_A Hypothetical UPF0222 pr 38.4 19 0.00065 25.1 2.4 40 42-81 22-64 (85)
28 3eh2_A Protein transport prote 37.7 23 0.00079 32.7 3.5 36 23-58 92-131 (766)
29 1faq_A RAF-1; transferase, ser 36.0 24 0.00083 21.0 2.3 24 103-131 15-38 (52)
30 2ct7_A Ring finger protein 31; 31.6 30 0.001 23.1 2.4 24 105-128 28-51 (86)
31 1vq8_Z 50S ribosomal protein L 31.0 29 0.001 23.9 2.3 33 60-92 23-55 (83)
32 4b6d_A RAC GTPase-activating p 30.5 32 0.0011 22.1 2.4 28 103-132 20-47 (61)
33 3j20_Y 30S ribosomal protein S 29.7 35 0.0012 21.3 2.3 27 103-129 20-46 (50)
34 2k2d_A Ring finger and CHY zin 28.4 55 0.0019 22.2 3.3 34 60-93 33-66 (79)
35 3h0g_I DNA-directed RNA polyme 27.4 42 0.0014 23.7 2.7 31 104-134 6-40 (113)
36 2csz_A Synaptotagmin-like prot 27.3 13 0.00046 25.7 0.1 49 23-89 23-71 (76)
37 3na7_A HP0958; flagellar bioge 27.0 25 0.00085 27.7 1.6 9 27-35 200-208 (256)
38 2jrp_A Putative cytoplasmic pr 27.0 69 0.0024 22.3 3.7 26 104-129 33-60 (81)
39 2hf1_A Tetraacyldisaccharide-1 27.0 49 0.0017 21.9 2.8 32 102-133 8-39 (68)
40 2fnf_X Putative RAS effector N 26.6 29 0.00098 22.8 1.6 24 103-130 36-59 (72)
41 2js4_A UPF0434 protein BB2007; 26.6 49 0.0017 22.1 2.8 31 103-133 9-39 (70)
42 1ptq_A Protein kinase C delta 26.2 28 0.00094 20.5 1.3 25 104-129 13-37 (50)
43 1pcx_A Protein transport prote 25.7 59 0.002 30.2 4.0 33 25-57 112-148 (810)
44 2jr6_A UPF0434 protein NMA0874 24.6 44 0.0015 22.2 2.2 31 103-133 9-39 (68)
45 1zbd_B Rabphilin-3A; G protein 24.1 33 0.0011 25.3 1.7 54 66-132 57-110 (134)
46 2pk7_A Uncharacterized protein 23.3 38 0.0013 22.6 1.7 29 104-132 10-38 (69)
47 1pcx_A Protein transport prote 22.6 42 0.0014 31.2 2.4 21 115-135 129-149 (810)
48 1y8f_A UNC-13 homolog A, MUNC1 21.8 32 0.0011 21.8 1.1 26 103-129 25-50 (66)
49 2k2d_A Ring finger and CHY zin 21.8 99 0.0034 20.9 3.6 35 97-131 32-66 (79)
50 1x0t_A Ribonuclease P protein 21.3 58 0.002 23.4 2.5 49 61-118 62-110 (120)
51 1m2v_B SEC24, protein transpor 21.0 47 0.0016 31.6 2.5 22 114-135 244-265 (926)
52 1m2v_B SEC24, protein transpor 20.9 82 0.0028 29.9 4.1 33 25-57 228-264 (926)
No 1
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=93.90 E-value=0.04 Score=37.91 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=32.4
Q ss_pred ceEECCCCCccccccccceeEEEEcCCcCeEEEEecCCceEe
Q 032227 81 TSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVK 122 (145)
Q Consensus 81 ~sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~LmyP~GA~sVk 122 (145)
-.|||+.|..++.+-+..|. .+.|.+|.++|..|.|-.+-.
T Consensus 6 m~VKCp~C~niq~VFShA~t-vV~C~~Cg~~L~~PTGGKA~l 46 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPST-IVKCIICGRTVAEPTGGKGNI 46 (66)
T ss_dssp EEEECTTTCCEEEEESSCSS-CEECSSSCCEEEECCSSSCEE
T ss_pred EEEECCCCCCceEEEecCce-EEEcccCCCEEeecCCcceee
Confidence 35899999999887554343 789999999999999976543
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.43 E-value=0.054 Score=36.88 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=29.5
Q ss_pred eEECCCCCccccccccceeEEEEcCCcCeEEEEecCCceE
Q 032227 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121 (145)
Q Consensus 82 sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~LmyP~GA~sV 121 (145)
.|||+.|..++.+-+. -...+.|.+|.++|..|.|-..-
T Consensus 15 ~VkCp~C~~~q~VFSh-a~t~V~C~~Cgt~L~~PTGGKa~ 53 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSH-PATKVRCLICGATLVEPTGGKGI 53 (63)
T ss_dssp EEECSSSCCEEEEESS-CSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCeeEEEec-CCeEEEccCcCCEEecCCCCcEE
Confidence 5888888888877543 33478899999999999886543
No 3
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=93.18 E-value=0.11 Score=36.91 Aligned_cols=45 Identities=22% Similarity=0.570 Sum_probs=30.8
Q ss_pred eEECCCCCccccccccceeEEEEcCCcCeEEEEecCCceEeCCCCC
Q 032227 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCN 127 (145)
Q Consensus 82 sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~LmyP~GA~sVkCa~C~ 127 (145)
.|+|+.|..++.+-+..| ..|.|.+|.++|..|.|-.+-.=.-|.
T Consensus 32 ~VkCp~C~n~q~VFShA~-t~V~C~~Cg~~L~~PTGGKA~l~egc~ 76 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQ-STIICEKCSAILCKPTGGKVQIQAGCA 76 (81)
T ss_dssp EEECSSSCCEEEEETTCS-SCEECSSSCCEEEEECSSCEEECSSCE
T ss_pred EeECCCCCCeeEEEecCc-cEEEccCCCCEEeecCCCCeEecCCcc
Confidence 467888887777654333 368888888888888887665444343
No 4
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=90.82 E-value=0.11 Score=37.03 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=28.9
Q ss_pred eEECCCCCccccccccceeEEEEcCCcCeEEEEecCCceEeCCCC
Q 032227 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVC 126 (145)
Q Consensus 82 sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~LmyP~GA~sVkCa~C 126 (145)
.|+|+.|..++.+-+..| ..+.|.+|.++|..|.|-..-.=.-|
T Consensus 34 ~VkCp~C~~~q~VFSha~-t~V~C~~Cg~~L~~PTGGKa~l~egc 77 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQ-TAVTCESCSTILCTPTGGKAKLSEGT 77 (82)
T ss_dssp EEECTTSCSCEEEESBCS-SCCCCSSSCCCCEECCSSBCEECSSC
T ss_pred EEECCCCCCeeEEEecCC-eEEEccccCCEEeccCCCCeEecCCc
Confidence 477777777776644333 36778888888888877665544444
No 5
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.40 E-value=0.15 Score=35.01 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=29.9
Q ss_pred eeecCCCCcccCCCCCCCcceeEEeCcccceEeeecCCceE
Q 032227 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83 (145)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~q~aql~CGgCr~lLmYP~GA~sV 83 (145)
.|+|+.|..++.+= +.....+.|.+|.++|..|.|-..-
T Consensus 7 ~VKCp~C~niq~VF--ShA~tvV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 7 KVKCPDCEHEQVIF--DHPSTIVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp EEECTTTCCEEEEE--SSCSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCceEEE--ecCceEEEcccCCCEEeecCCccee
Confidence 58899998888762 4456678899999999988886543
No 6
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.49 E-value=0.2 Score=34.12 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=23.7
Q ss_pred eeecCCCCcccCCCCCCCcceeEEeCcccceEeeecCCc
Q 032227 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81 (145)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~q~aql~CGgCr~lLmYP~GA~ 81 (145)
.|+|+.|..++.+ =++....+.|.+|.++|..|.|-.
T Consensus 15 ~VkCp~C~~~q~V--FSha~t~V~C~~Cgt~L~~PTGGK 51 (63)
T 3j20_W 15 RVKCIDCGNEQIV--FSHPATKVRCLICGATLVEPTGGK 51 (63)
T ss_dssp EEECSSSCCEEEE--ESSCSSCEECSSSCCEEEECCSSS
T ss_pred EEECCCCCCeeEE--EecCCeEEEccCcCCEEecCCCCc
Confidence 4677777776665 234455667777777777777654
No 7
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=89.04 E-value=0.22 Score=35.32 Aligned_cols=38 Identities=21% Similarity=0.551 Sum_probs=24.1
Q ss_pred eeecCCCCcccCCCCCCCcceeEEeCcccceEeeecCCce
Q 032227 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (145)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~q~aql~CGgCr~lLmYP~GA~s 82 (145)
.|+|+.|..++.+= ++....+.|.+|.++|..|.|--.
T Consensus 32 ~VkCp~C~n~q~VF--ShA~t~V~C~~Cg~~L~~PTGGKA 69 (81)
T 2xzm_6 32 DVKCAQCQNIQMIF--SNAQSTIICEKCSAILCKPTGGKV 69 (81)
T ss_dssp EEECSSSCCEEEEE--TTCSSCEECSSSCCEEEEECSSCE
T ss_pred EeECCCCCCeeEEE--ecCccEEEccCCCCEEeecCCCCe
Confidence 46777777766652 344556677777777777776544
No 8
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=87.30 E-value=0.14 Score=36.72 Aligned_cols=44 Identities=23% Similarity=0.550 Sum_probs=29.0
Q ss_pred eEECCCCCccccccccceeEEEEcCCcCeEEEEecCCceEeCCCC
Q 032227 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVC 126 (145)
Q Consensus 82 sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~LmyP~GA~sVkCa~C 126 (145)
.|+|+.|..++.+-+..+ ..+.|.+|.++|..|.|-.+-.=.-|
T Consensus 36 ~VkCp~C~~~~~VFShA~-t~V~C~~CgtvL~~PTGGKa~l~egc 79 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQ-TVVVCPGCQTVLCQPTGGKARLTEGC 79 (86)
T ss_dssp EEECTTTCCEEEEETTCS-SCCCCSSSCCCCSCCCSSSCCCSCBC
T ss_pred EEECCCCCCeeEEEecCC-cEEEccCCCCEeecCCCCCEEecCCc
Confidence 477777777776644333 36778888888888887665444444
No 9
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=84.99 E-value=0.26 Score=35.04 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=25.3
Q ss_pred eeecCCCCcccCCCCCCCcceeEEeCcccceEeeecCCceE
Q 032227 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83 (145)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~q~aql~CGgCr~lLmYP~GA~sV 83 (145)
.|+|..|..++.+= ++....+.|.+|.++|..|.|-..-
T Consensus 34 ~VkCp~C~~~q~VF--Sha~t~V~C~~Cg~~L~~PTGGKa~ 72 (82)
T 3u5c_b 34 DVKCPGCLNITTVF--SHAQTAVTCESCSTILCTPTGGKAK 72 (82)
T ss_dssp EEECTTSCSCEEEE--SBCSSCCCCSSSCCCCEECCSSBCE
T ss_pred EEECCCCCCeeEEE--ecCCeEEEccccCCEEeccCCCCeE
Confidence 47777777777652 3445566777777777777775543
No 10
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=81.76 E-value=0.32 Score=34.86 Aligned_cols=38 Identities=32% Similarity=0.588 Sum_probs=24.1
Q ss_pred eeecCCCCcccCCCCCCCcceeEEeCcccceEeeecCCce
Q 032227 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (145)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~q~aql~CGgCr~lLmYP~GA~s 82 (145)
.|+|..|..++.+= ++....+.|.+|.++|..|.|--.
T Consensus 36 ~VkCp~C~~~~~VF--ShA~t~V~C~~CgtvL~~PTGGKa 73 (86)
T 3iz6_X 36 DVKCQGCFNITTVF--SHSQTVVVCPGCQTVLCQPTGGKA 73 (86)
T ss_dssp EEECTTTCCEEEEE--TTCSSCCCCSSSCCCCSCCCSSSC
T ss_pred EEECCCCCCeeEEE--ecCCcEEEccCCCCEeecCCCCCE
Confidence 37777777777652 344456667777777777766543
No 11
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=71.40 E-value=7.1 Score=26.50 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=27.0
Q ss_pred EEEEcCCcCeEEEEecCCceEeCCCCCceeeccCCCC
Q 032227 101 AHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGASTS 137 (145)
Q Consensus 101 ~~v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i~~~~~ 137 (145)
.-+.|. |+..+.--.|+.+.+|+ |+.+-+|....-
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~ri 37 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRI 37 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSC
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEE
Confidence 457788 88888888888888887 888888765443
No 12
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=70.39 E-value=3.4 Score=27.01 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=27.4
Q ss_pred ccccceeeccC--cccee----ecccCCCeeecCCCCcccCCCCCC
Q 032227 20 NGAQSQLVCSG--CRNLL----LYPVGATSVCCAVCNAVTAVPPPG 59 (145)
Q Consensus 20 ~~~~sQlvC~g--Cr~lL----~YprGA~~VrC~~C~tvn~vpp~~ 59 (145)
+.+..-+.|.. ||..| .+-.|+..-+|..|...|.+|++-
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y 49 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSY 49 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCC
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHH
Confidence 44556677876 88766 344566778888888888877543
No 13
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=63.10 E-value=1.4 Score=31.33 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=15.2
Q ss_pred eEECCCCCccccccccceeEEEEcCCcCeEE
Q 032227 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLL 112 (145)
Q Consensus 82 sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~L 112 (145)
++.|+.|+.+|.+++..-...-.||.|+..|
T Consensus 14 ~~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANKVPSDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEEEEGGGTTSCCBCTTTCCBS
T ss_pred eEECccccccccCCcccccCCCCCCcCCccc
Confidence 3555555555555444333344555555443
No 14
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=58.59 E-value=11 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=25.8
Q ss_pred ceEECCCCCcccccc----ccceeEEEEcCCcCeEEEEecCCce
Q 032227 81 TSVQCSCCHTVNLAL----EANQVAHVNCGNCRMLLMYQYGARS 120 (145)
Q Consensus 81 ~sVrC~~C~tVn~v~----~~~q~~~v~Cg~Crt~LmyP~GA~s 120 (145)
..+.|+-|+..+.+. -.+..+++.|+.|...-.++.++.+
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ 65 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSC
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccC
Confidence 445677777665431 2456788888888877776666543
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=55.23 E-value=7.7 Score=23.54 Aligned_cols=27 Identities=30% Similarity=0.721 Sum_probs=14.9
Q ss_pred EcCCcCe-EEEEecCCceEeCCCCCcee
Q 032227 104 NCGNCRM-LLMYQYGARSVKCAVCNFVT 130 (145)
Q Consensus 104 ~Cg~Crt-~LmyP~GA~sVkCa~C~~VT 130 (145)
.|..|.. .|.|=..+....|..|+.|-
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4555554 55555555555555555543
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=54.90 E-value=9.9 Score=23.02 Aligned_cols=28 Identities=36% Similarity=0.769 Sum_probs=13.6
Q ss_pred eeeccCccc-eeecccCCCeeecCCCCcc
Q 032227 25 QLVCSGCRN-LLLYPVGATSVCCAVCNAV 52 (145)
Q Consensus 25 QlvC~gCr~-lL~YprGA~~VrC~~C~tv 52 (145)
.++|-.|.. -|.|-..+....|..|..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCc
Confidence 344555544 4455444444555555443
No 17
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=53.79 E-value=7.7 Score=25.27 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=27.0
Q ss_pred eeEEEEcCC--cCeEE----EEecCCceEeCCCCCceeeccCCC-Cccc
Q 032227 99 QVAHVNCGN--CRMLL----MYQYGARSVKCAVCNFVTAVGAST-STTE 140 (145)
Q Consensus 99 q~~~v~Cg~--Crt~L----myP~GA~sVkCa~C~~VT~i~~~~-~~~~ 140 (145)
+..-++|.+ ||.-| .+-.+....+|..|...|+++.+- +|+|
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~ 54 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISE 54 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHH
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCc
Confidence 334455655 65543 344677889999999999998543 3444
No 18
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=49.18 E-value=3.9 Score=27.99 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=16.9
Q ss_pred eEECCCCCccccccccceeEEEEcCCcCeE
Q 032227 82 SVQCSCCHTVNLALEANQVAHVNCGNCRML 111 (145)
Q Consensus 82 sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~ 111 (145)
.+.|+.|...|.+++........|+.|...
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~ 34 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHS 34 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCB
T ss_pred EEECcccccccCCCCcccccCCcchhcCCc
Confidence 455666666665555544445556666554
No 19
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=47.82 E-value=3.9 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=20.3
Q ss_pred eeecCCCCcccCCCCCCCcceeEEeCcccceE
Q 032227 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 74 (145)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~q~aql~CGgCr~lL 74 (145)
++.|+.|.++|.+|. ......-.||.|+..|
T Consensus 14 ~~~c~~c~~~~~~~~-~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANKVPS-DRLAAGPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEEEEG-GGTTSCCBCTTTCCBS
T ss_pred eEECccccccccCCc-ccccCCCCCCcCCccc
Confidence 477888888887752 3234455777777666
No 20
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=45.59 E-value=57 Score=24.81 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=44.8
Q ss_pred CeeecCCCCccc----------CCCCCCCcceeEEeCcccceEeeecCCceEECCCCCccccc---------cccceeEE
Q 032227 42 TSVCCAVCNAVT----------AVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA---------LEANQVAH 102 (145)
Q Consensus 42 ~~VrC~~C~tvn----------~vpp~~~q~aql~CGgCr~lLmYP~GA~sVrC~~C~tVn~v---------~~~~q~~~ 102 (145)
-.+||+.|+.+- .-+....+...+.||.|++.+-+- -.|+.|...-.- .+.-++.|
T Consensus 26 ~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~-----~~C~~Cg~~f~~Y~C~~C~l~d~~k~~yH 100 (143)
T 2dkt_A 26 CLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQ-----QTCEDCSTLFGEYYCSICHLFDKDKRQYH 100 (143)
T ss_dssp EEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSC-----SBCSSSCCBSCSEECSSSCCEECSSSEEE
T ss_pred eeEECCCCCCccchhhhhccccccccchhccceeeecccCcccccc-----CcCCCCCccceeeEeceeecccCCCceec
Confidence 468888888742 222233456789999999999653 256666422000 01112212
Q ss_pred -EEcCCcCeEEEEecCCceEeCCCCCceeecc
Q 032227 103 -VNCGNCRMLLMYQYGARSVKCAVCNFVTAVG 133 (145)
Q Consensus 103 -v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i~ 133 (145)
-.||=||+-+ |-..+-|..|+.--.|.
T Consensus 101 C~~CgiCR~G~----~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 101 CESCGICRIGP----KEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp ETTTTEEEESC----GGGEEEETTTTEEEEGG
T ss_pred CCCCCceeccC----CcCcEECCcCCeeeccc
Confidence 1344444432 56677777777665544
No 21
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=45.52 E-value=19 Score=24.35 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=23.6
Q ss_pred ceeEEeCcccceEeeecCCceEECCCCCcccccc
Q 032227 62 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAL 95 (145)
Q Consensus 62 ~aql~CGgCr~lLmYP~GA~sVrC~~C~tVn~v~ 95 (145)
++-+.|- |+..+.--.|+.+.+|+ |..+-.+.
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 3456777 88887778888888888 88775553
No 22
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.23 E-value=5.3 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=15.4
Q ss_pred EEEEcCCcCeEEEEecCCceEeCCCCCceeeccC
Q 032227 101 AHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGA 134 (145)
Q Consensus 101 ~~v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i~~ 134 (145)
+|.-|..|-.. ...+|+.|+....++.
T Consensus 25 gH~fC~~Ci~~-------~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 25 LHTLCSGCLEA-------SGMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCSBTTTCSS-------SSSSCSSCCSSSSCCS
T ss_pred CCcccHHHHcc-------CCCCCCcCCcEeecCC
Confidence 45555666443 3556777776655543
No 23
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=44.78 E-value=7.5 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.6
Q ss_pred ceeEEEEcCCcCeEEEEecCCceEeCCCCCceeecc
Q 032227 98 NQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVG 133 (145)
Q Consensus 98 ~q~~~v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i~ 133 (145)
.|-..-.|.+|.-.+++-.++...+|..|.++-.=+
T Consensus 23 ~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 23 EMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred hccccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 455677899999889999999999999998875433
No 24
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=41.93 E-value=15 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.630 Sum_probs=16.4
Q ss_pred EcCCcCeEEEEec----CCceEeCCCCCceeecc
Q 032227 104 NCGNCRMLLMYQY----GARSVKCAVCNFVTAVG 133 (145)
Q Consensus 104 ~Cg~Crt~LmyP~----GA~sVkCa~C~~VT~i~ 133 (145)
-|..|..+|.... +...+.|..|.|...+.
T Consensus 6 FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 6 FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp BCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred cccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 4566666555552 24456666666655543
No 25
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=39.78 E-value=19 Score=33.30 Aligned_cols=36 Identities=28% Similarity=0.711 Sum_probs=28.5
Q ss_pred cceeeccCcccee----ecccCCCeeecCCCCcccCCCCC
Q 032227 23 QSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPPP 58 (145)
Q Consensus 23 ~sQlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp~ 58 (145)
.+=+-|..||+.| .+-.|....+|..|+..|.+|++
T Consensus 96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGG
T ss_pred CCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchH
Confidence 3457899999976 44567789999999999998753
No 26
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=39.77 E-value=22 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEcCCcCeEEEEecCCceEeCCCCCcee
Q 032227 102 HVNCGNCRMLLMYQYGARSVKCAVCNFVT 130 (145)
Q Consensus 102 ~v~Cg~Crt~LmyP~GA~sVkCa~C~~VT 130 (145)
-..|..|...| +.+.+||..|.++-
T Consensus 22 pt~C~~C~~~i----~kqg~kC~~C~~~c 46 (59)
T 1rfh_A 22 PGWCDLCGREV----LRQALRCANCKFTC 46 (59)
T ss_dssp CEECTTTCSEE----CSCCEECTTTSCEE
T ss_pred CeEchhcchhh----hhCccEeCCCCCeE
Confidence 35688888877 57788888887753
No 27
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=38.39 E-value=19 Score=25.11 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=28.5
Q ss_pred CeeecCCCCcccCCCC---CCCcceeEEeCcccceEeeecCCc
Q 032227 42 TSVCCAVCNAVTAVPP---PGTEMAQLVCGGCHTLLMYIRGAT 81 (145)
Q Consensus 42 ~~VrC~~C~tvn~vpp---~~~q~aql~CGgCr~lLmYP~GA~ 81 (145)
+.-.|+.|++.+++-- -..-.+.|.|+.|...--++.++.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L 64 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL 64 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSS
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCcc
Confidence 4457999999876531 134578999999988777766654
No 28
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=37.69 E-value=23 Score=32.68 Aligned_cols=36 Identities=25% Similarity=0.746 Sum_probs=28.9
Q ss_pred cceeeccCcccee----ecccCCCeeecCCCCcccCCCCC
Q 032227 23 QSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPPP 58 (145)
Q Consensus 23 ~sQlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp~ 58 (145)
.+=+-|..||+.| .+-.|....+|..|+..|.+|++
T Consensus 92 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 92 SGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp GCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 4457999999976 34567889999999999999865
No 29
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=36.03 E-value=24 Score=20.99 Aligned_cols=24 Identities=21% Similarity=0.740 Sum_probs=17.6
Q ss_pred EEcCCcCeEEEEecCCceEeCCCCCceee
Q 032227 103 VNCGNCRMLLMYQYGARSVKCAVCNFVTA 131 (145)
Q Consensus 103 v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~ 131 (145)
..|..|+.+|. +.++|..|.+.-.
T Consensus 15 t~C~~C~~~l~-----qG~~C~~C~~~~H 38 (52)
T 1faq_A 15 AFCDICQKFLL-----NGFRCQTCGYKFH 38 (52)
T ss_dssp EECTTSSSEEC-----SEEECTTTTCCBC
T ss_pred cCCCCcccccc-----cCCEeCCCCCeEC
Confidence 57888887664 7788888876543
No 30
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.56 E-value=30 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.708 Sum_probs=9.5
Q ss_pred cCCcCeEEEEecCCceEeCCCCCc
Q 032227 105 CGNCRMLLMYQYGARSVKCAVCNF 128 (145)
Q Consensus 105 Cg~Crt~LmyP~GA~sVkCa~C~~ 128 (145)
|.+|...++...+..-|.|+.|++
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~ 51 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQ 51 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCC
T ss_pred CcCCCchheecCCCCceEeCCCCC
Confidence 333333333333333344444443
No 31
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.04 E-value=29 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=26.8
Q ss_pred CcceeEEeCcccceEeeecCCceEECCCCCccc
Q 032227 60 TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN 92 (145)
Q Consensus 60 ~q~aql~CGgCr~lLmYP~GA~sVrC~~C~tVn 92 (145)
.|...-.|-.|...++|..++...+|..|..+-
T Consensus 23 ~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 23 EMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHHSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred hccccCcCCCCCCcceeccCCCeEECCCCCCEe
Confidence 345677888999889999998888898888763
No 32
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=30.53 E-value=32 Score=22.07 Aligned_cols=28 Identities=29% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEcCCcCeEEEEecCCceEeCCCCCceeec
Q 032227 103 VNCGNCRMLLMYQYGARSVKCAVCNFVTAV 132 (145)
Q Consensus 103 v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i 132 (145)
.+|.-|...+- .|.+.+||..|..+-.-
T Consensus 20 ~~C~~Cg~~i~--~gkq~~kC~dC~~~cH~ 47 (61)
T 4b6d_A 20 ESCVPCGKRIK--FGKLSLKCRDCRVVSHP 47 (61)
T ss_dssp EECTTTCCEEC--TTCEEEEESSSSCEECG
T ss_pred cccccccCEEE--EeeEeeECCCCCCeEch
Confidence 67888877653 88899999999876543
No 33
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.67 E-value=35 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=14.1
Q ss_pred EEcCCcCeEEEEecCCceEeCCCCCce
Q 032227 103 VNCGNCRMLLMYQYGARSVKCAVCNFV 129 (145)
Q Consensus 103 v~Cg~Crt~LmyP~GA~sVkCa~C~~V 129 (145)
-.|..|...++.........|..|+++
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCE
Confidence 346666543333333456666666654
No 34
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=28.40 E-value=55 Score=22.19 Aligned_cols=34 Identities=15% Similarity=0.406 Sum_probs=27.1
Q ss_pred CcceeEEeCcccceEeeecCCceEECCCCCcccc
Q 032227 60 TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL 93 (145)
Q Consensus 60 ~q~aql~CGgCr~lLmYP~GA~sVrC~~C~tVn~ 93 (145)
.++.++.|..|...---+..-.-.+|+.|...|-
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 5567888999988887777777778999988875
No 35
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.37 E-value=42 Score=23.74 Aligned_cols=31 Identities=16% Similarity=0.478 Sum_probs=18.7
Q ss_pred EcCCcCeEEEEecC----CceEeCCCCCceeeccC
Q 032227 104 NCGNCRMLLMYQYG----ARSVKCAVCNFVTAVGA 134 (145)
Q Consensus 104 ~Cg~Crt~LmyP~G----A~sVkCa~C~~VT~i~~ 134 (145)
-|..|..+|....+ ...+.|..|.|+-.+..
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 46667666544433 23577777777766643
No 36
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.34 E-value=13 Score=25.71 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=24.4
Q ss_pred cceeeccCccceeecccCCCeeecCCCCcccCCCCCCCcceeEEeCcccceEeeecCCceEECCCCC
Q 032227 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCH 89 (145)
Q Consensus 23 ~sQlvC~gCr~lL~YprGA~~VrC~~C~tvn~vpp~~~q~aql~CGgCr~lLmYP~GA~sVrC~~C~ 89 (145)
.++-.|.-|+.-|- ..+.+.+.|..|+ +.||..||+.. .+ ..-+|..|+
T Consensus 23 ~~~r~CarC~~~LG-~l~~~g~~C~~Ck-------------~rVC~~Crv~~---~~-~~W~C~VC~ 71 (76)
T 2csz_A 23 YSDRTCARCQESLG-RLSPKTNTCRGCN-------------HLVCRDCRIQE---SN-GTWRCKVCS 71 (76)
T ss_dssp CCCCBCSSSCCBCS-SSCTTTSEETTTT-------------EECCTTSEEEC---ST-TCEEEHHHH
T ss_pred CCccchhhhCcccc-ccccCCCcCcccC-------------hhhcccccccC---CC-CCEEEeeCc
Confidence 44555666665554 2333334455443 55666666543 11 445555543
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.05 E-value=25 Score=27.73 Aligned_cols=9 Identities=44% Similarity=0.958 Sum_probs=5.5
Q ss_pred eccCcccee
Q 032227 27 VCSGCRNLL 35 (145)
Q Consensus 27 vC~gCr~lL 35 (145)
+|+||+.-|
T Consensus 200 ~C~GC~~~l 208 (256)
T 3na7_A 200 ACGGCFIRL 208 (256)
T ss_dssp BCTTTCCBC
T ss_pred ccCCCCeee
Confidence 566666555
No 38
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.04 E-value=69 Score=22.25 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=16.2
Q ss_pred EcCCcCeEE--EEecCCceEeCCCCCce
Q 032227 104 NCGNCRMLL--MYQYGARSVKCAVCNFV 129 (145)
Q Consensus 104 ~Cg~Crt~L--myP~GA~sVkCa~C~~V 129 (145)
.|..|...| .=.=||.++-|..|+..
T Consensus 33 fCPeCgq~Le~lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQVLKACGAVDYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCEEEETTEEEECCTTTTCC
T ss_pred cCcchhhHHHHHHhcCCcCeeeccCCCE
Confidence 555665555 33456667788777754
No 39
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.02 E-value=49 Score=21.93 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=18.5
Q ss_pred EEEcCCcCeEEEEecCCceEeCCCCCceeecc
Q 032227 102 HVNCGNCRMLLMYQYGARSVKCAVCNFVTAVG 133 (145)
Q Consensus 102 ~v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i~ 133 (145)
-+.|..|+..|-|=.......|..|+..-.|+
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 45556666666665555555666666555554
No 40
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=26.62 E-value=29 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=17.0
Q ss_pred EEcCCcCeEEEEecCCceEeCCCCCcee
Q 032227 103 VNCGNCRMLLMYQYGARSVKCAVCNFVT 130 (145)
Q Consensus 103 v~Cg~Crt~LmyP~GA~sVkCa~C~~VT 130 (145)
..|..|..+| +.+.++|..|.+.-
T Consensus 36 t~C~~C~~~l----~~qG~kC~~C~~~c 59 (72)
T 2fnf_X 36 GWCDLCGREV----LRQALRCANCKFTC 59 (72)
T ss_dssp CBCTTTSSBC----SSCCEECTTSSCEE
T ss_pred cchhhhhHHH----HhCcCccCCCCCee
Confidence 4577777777 66778888887654
No 41
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.59 E-value=49 Score=22.06 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=16.3
Q ss_pred EEcCCcCeEEEEecCCceEeCCCCCceeecc
Q 032227 103 VNCGNCRMLLMYQYGARSVKCAVCNFVTAVG 133 (145)
Q Consensus 103 v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i~ 133 (145)
+.|..|+..|-|=.......|..|+..-.|.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 4455555555555555555555555555543
No 42
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=26.16 E-value=28 Score=20.51 Aligned_cols=25 Identities=28% Similarity=0.707 Sum_probs=15.3
Q ss_pred EcCCcCeEEEEecCCceEeCCCCCce
Q 032227 104 NCGNCRMLLMYQYGARSVKCAVCNFV 129 (145)
Q Consensus 104 ~Cg~Crt~LmyP~GA~sVkCa~C~~V 129 (145)
.|..|+.+| +=.+.+.++|..|.+.
T Consensus 13 ~C~~C~~~l-~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 13 FCDHCGSLL-WGLVKQGLKCEDCGMN 37 (50)
T ss_dssp BCTTTCCBC-CSSSSCEEEETTTCCE
T ss_pred CcCCCCcee-eccCCccCEeCCCCCe
Confidence 466666655 3345677777777654
No 43
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=25.66 E-value=59 Score=30.17 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=24.8
Q ss_pred eeeccCcccee----ecccCCCeeecCCCCcccCCCC
Q 032227 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (145)
Q Consensus 25 QlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp 57 (145)
-+-|..||..| .+-.|....+|..|++.|.+|+
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 46788888765 3456777888888888888764
No 44
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.59 E-value=44 Score=22.15 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=15.0
Q ss_pred EEcCCcCeEEEEecCCceEeCCCCCceeecc
Q 032227 103 VNCGNCRMLLMYQYGARSVKCAVCNFVTAVG 133 (145)
Q Consensus 103 v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i~ 133 (145)
+.|..|+..|-|=.......|..|+..-.|+
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 3444444444444444444555555544443
No 45
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.13 E-value=33 Score=25.30 Aligned_cols=54 Identities=24% Similarity=0.404 Sum_probs=26.8
Q ss_pred EeCcccceEeeecCCceEECCCCCccccccccceeEEEEcCCcCeEEEEecCCceEeCCCCCceeec
Q 032227 66 VCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAV 132 (145)
Q Consensus 66 ~CGgCr~lLmYP~GA~sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i 132 (145)
.|.-|...+- ..+.....|.-|+. -.|..|+.-.-+-.......|..|+.-.++
T Consensus 57 ~C~~C~~~~g-~l~~~g~~C~~C~~------------~VC~~C~~~~~~~~~~~~W~C~vC~k~rel 110 (134)
T 1zbd_B 57 RCILCGEQLG-MLGSASVVCEDCKK------------NVCTKCGVETSNNRPHPVWLCKICLEQREV 110 (134)
T ss_dssp BCSSSCCBCS-TTSCCEEECTTTCC------------EEETTSEEECCCSSSSCCEEEHHHHHHHHH
T ss_pred cccccCCCcc-cccCCCCCCCCCCc------------ccccccCCccCCCCCccceechhhHHHHHH
Confidence 4555555543 22334455555553 245555555444344555566666554444
No 46
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.35 E-value=38 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=12.6
Q ss_pred EcCCcCeEEEEecCCceEeCCCCCceeec
Q 032227 104 NCGNCRMLLMYQYGARSVKCAVCNFVTAV 132 (145)
Q Consensus 104 ~Cg~Crt~LmyP~GA~sVkCa~C~~VT~i 132 (145)
.|..|+..|.|-.......|..|+..-.|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 34444444444443444444444444444
No 47
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=22.55 E-value=42 Score=31.15 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.6
Q ss_pred ecCCceEeCCCCCceeeccCC
Q 032227 115 QYGARSVKCAVCNFVTAVGAS 135 (145)
Q Consensus 115 P~GA~sVkCa~C~~VT~i~~~ 135 (145)
=.|....+|.-|.+.|+++..
T Consensus 129 ~~~g~~W~C~~C~~~N~~P~~ 149 (810)
T 1pcx_A 129 IEQGRRWRCNFCRLANDVPMQ 149 (810)
T ss_dssp ETTTTEEECTTTCCEEECCGG
T ss_pred eCCCCEEEccCCCCcCCCchh
Confidence 467889999999999998753
No 48
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=21.84 E-value=32 Score=21.81 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=16.6
Q ss_pred EEcCCcCeEEEEecCCceEeCCCCCce
Q 032227 103 VNCGNCRMLLMYQYGARSVKCAVCNFV 129 (145)
Q Consensus 103 v~Cg~Crt~LmyP~GA~sVkCa~C~~V 129 (145)
..|..|+.+| +-.+.+.++|..|.+.
T Consensus 25 t~C~~C~~~l-~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 25 TYCYECEGLL-WGIARQGMRCTECGVK 50 (66)
T ss_dssp CCCTTTCCCC-CSSCCEEEEETTTCCE
T ss_pred cChhhcChhh-cccCcceeEcCCCCCe
Confidence 3477776655 4445677777777654
No 49
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=21.77 E-value=99 Score=20.87 Aligned_cols=35 Identities=20% Similarity=0.496 Sum_probs=29.0
Q ss_pred cceeEEEEcCCcCeEEEEecCCceEeCCCCCceee
Q 032227 97 ANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTA 131 (145)
Q Consensus 97 ~~q~~~v~Cg~Crt~LmyP~GA~sVkCa~C~~VT~ 131 (145)
.++...+.|..|...--.++.-...||+.|...+.
T Consensus 32 ~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 32 QNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp -CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred hCCEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 35667899999999999998888889999998754
No 50
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=21.28 E-value=58 Score=23.38 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=25.5
Q ss_pred cceeEEeCcccceEeeecCCceEECCCCCccccccccceeEEEEcCCcCeEEEEecCC
Q 032227 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGA 118 (145)
Q Consensus 61 q~aql~CGgCr~lLmYP~GA~sVrC~~C~tVn~v~~~~q~~~v~Cg~Crt~LmyP~GA 118 (145)
++....|..|.++|..-..+. |+ ........-.++|..|...--||++.
T Consensus 62 ~~KR~~Ck~C~s~LiPG~t~~-vr--------i~~~~~~~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 62 KWKRRYCKRCHTFLIPGVNAR-VR--------LRTKRMPHVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp TTTTSBCTTTCCBCCBTTTEE-EE--------EECSSSCEEEEEETTTCCEEEEECC-
T ss_pred HHHHHhccCCCCEeECCCceE-EE--------EecCCccEEEEECCCCCCEEEEccCc
Confidence 345557777777776543331 11 11000113456777777777777664
No 51
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=21.03 E-value=47 Score=31.57 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=18.2
Q ss_pred EecCCceEeCCCCCceeeccCC
Q 032227 114 YQYGARSVKCAVCNFVTAVGAS 135 (145)
Q Consensus 114 yP~GA~sVkCa~C~~VT~i~~~ 135 (145)
+=.|....+|.-|.+.|+++..
T Consensus 244 ~~~~g~~W~CnfC~~~N~~P~~ 265 (926)
T 1m2v_B 244 FIEQGRRWRCNFCRLANDVPMQ 265 (926)
T ss_dssp EETTTTEEECTTTCCEEECCGG
T ss_pred EeCCCCEEEccCCCCCCCCchh
Confidence 3467889999999999999754
No 52
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=20.94 E-value=82 Score=29.94 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=25.8
Q ss_pred eeeccCcccee----ecccCCCeeecCCCCcccCCCC
Q 032227 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (145)
Q Consensus 25 QlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp 57 (145)
-+.|..||..| .+-.|....+|..|++.|.+|+
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 46788898866 4556778889999999998764
Done!