Query 032228
Match_columns 145
No_of_seqs 113 out of 674
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7q_A Translation initiation 100.0 1.7E-52 6E-57 321.4 15.6 138 2-145 1-143 (143)
2 2oqk_A Putative translation in 100.0 1.7E-44 5.8E-49 268.2 9.7 117 1-117 1-117 (117)
3 2dgy_A MGC11102 protein; EIF-1 100.0 6.7E-39 2.3E-43 236.9 10.9 103 21-125 4-108 (111)
4 1jt8_A EIF-1A, probable transl 100.0 2.5E-36 8.7E-41 220.3 3.6 89 22-110 8-99 (102)
5 3i4o_A Translation initiation 99.9 7.3E-24 2.5E-28 148.2 6.1 65 32-96 14-79 (79)
6 1ah9_A IF1, initiation factor 99.8 8.8E-22 3E-26 133.8 5.4 65 32-96 6-71 (71)
7 1hr0_W Translation initiation 99.8 3.1E-22 1.1E-26 136.3 -0.2 64 32-95 7-71 (71)
8 2rcn_A Probable GTPase ENGC; Y 97.3 0.00098 3.4E-08 56.7 8.7 61 33-97 47-111 (358)
9 1t9h_A YLOQ, probable GTPase E 97.1 0.0011 3.7E-08 55.1 7.4 58 35-95 12-73 (307)
10 2yv5_A YJEQ protein; hydrolase 96.5 0.01 3.5E-07 48.2 8.0 49 32-83 5-56 (302)
11 2k52_A Uncharacterized protein 96.1 0.013 4.3E-07 39.0 5.7 65 32-97 7-72 (80)
12 2wfw_A ARC; ATP-binding protei 95.0 0.056 1.9E-06 41.5 6.3 81 17-103 53-151 (153)
13 2khi_A 30S ribosomal protein S 94.5 0.09 3.1E-06 37.2 6.0 64 32-96 32-101 (115)
14 3h43_A Proteasome-activating n 92.3 0.54 1.9E-05 32.2 6.9 54 30-84 16-69 (85)
15 2wg5_A General control protein 91.6 0.6 2.1E-05 33.2 6.6 54 30-84 35-88 (109)
16 2k4k_A GSP13, general stress p 87.6 1.6 5.4E-05 31.4 6.4 66 30-96 6-77 (130)
17 3m9b_A Proteasome-associated A 87.3 1.7 5.8E-05 35.7 7.0 65 17-82 144-225 (251)
18 1ssf_A Transformation related 87.1 1 3.4E-05 34.7 5.2 28 35-62 27-54 (156)
19 1luz_A Protein K3, protein K2; 86.5 0.77 2.6E-05 31.1 3.9 66 25-94 5-80 (88)
20 1kl9_A Eukaryotic translation 86.4 2.6 8.8E-05 32.4 7.3 66 29-95 13-86 (182)
21 2khj_A 30S ribosomal protein S 83.7 1.6 5.4E-05 30.2 4.6 67 29-96 29-101 (109)
22 2g3r_A Tumor suppressor P53-bi 80.5 7.2 0.00025 28.8 7.2 47 33-81 21-68 (123)
23 2a19_A EIF-2- alpha, eukaryoti 80.1 6.7 0.00023 29.8 7.3 67 28-95 12-86 (175)
24 1gut_A Mopii, molybdate bindin 78.0 3.9 0.00014 25.2 4.6 52 31-82 6-60 (68)
25 3d3r_A Hydrogenase assembly ch 76.0 13 0.00044 26.5 7.3 58 35-103 27-85 (103)
26 3aev_A Translation initiation 75.8 8.1 0.00028 31.5 7.0 68 28-96 8-83 (275)
27 2z1c_A Hydrogenase expression/ 73.9 17 0.00058 24.3 7.9 56 35-103 6-61 (75)
28 1fr3_A MOP, molybdate/tungstat 73.7 5.1 0.00018 24.3 4.2 53 31-83 6-60 (67)
29 4gop_A Putative uncharacterize 73.3 5.2 0.00018 28.5 4.7 29 34-63 23-51 (114)
30 2id0_A Exoribonuclease 2; RNAs 69.3 16 0.00053 32.9 7.9 62 33-95 563-642 (644)
31 3mxn_B RECQ-mediated genome in 66.5 7.1 0.00024 29.7 4.3 48 34-82 63-110 (150)
32 2vqe_L 30S ribosomal protein S 66.4 6.7 0.00023 29.4 4.1 48 32-82 31-88 (135)
33 1q8k_A Eukaryotic translation 65.3 8.7 0.0003 31.9 5.0 67 28-95 10-84 (308)
34 1u0l_A Probable GTPase ENGC; p 64.8 16 0.00054 29.0 6.4 46 34-80 11-58 (301)
35 3p8d_A Medulloblastoma antigen 64.3 12 0.00042 24.6 4.7 32 30-61 18-50 (67)
36 3kdf_A Replication protein A 1 63.7 13 0.00045 26.7 5.1 30 34-63 27-57 (121)
37 3v2d_Y 50S ribosomal protein L 63.5 4.4 0.00015 29.2 2.5 35 65-99 1-35 (110)
38 3qii_A PHD finger protein 20; 62.8 14 0.00047 25.6 4.9 31 30-60 33-64 (85)
39 1h9m_A MODG, molybdenum-bindin 61.8 9.2 0.00032 26.2 4.0 52 32-83 82-136 (145)
40 1wi5_A RRP5 protein homolog; S 59.8 25 0.00086 24.3 6.0 68 29-98 19-95 (119)
41 2eqs_A ATP-dependent RNA helic 59.5 35 0.0012 23.1 6.6 64 29-95 10-83 (103)
42 2fhd_A RAD9 homolog, DNA repai 58.4 17 0.00057 27.7 5.1 45 34-80 24-73 (153)
43 1nnx_A Protein YGIW; structura 57.9 17 0.00058 25.9 4.8 48 33-81 41-88 (109)
44 2nn6_I 3'-5' exoribonuclease C 57.1 22 0.00074 27.6 5.7 63 28-91 78-156 (209)
45 2cqo_A Nucleolar protein of 40 56.6 37 0.0013 23.8 6.5 67 29-96 20-95 (119)
46 4b4t_L 26S protease subunit RP 56.6 15 0.00053 31.6 5.2 53 30-83 100-152 (437)
47 2ckk_A KIN17; beta barrel, rib 56.0 39 0.0013 24.4 6.6 61 34-95 35-95 (127)
48 3iz5_Y 60S ribosomal protein L 56.0 8.8 0.0003 29.1 3.2 32 67-98 45-76 (150)
49 4b4t_J 26S protease regulatory 55.9 30 0.001 29.7 6.9 56 29-85 66-121 (405)
50 1vq8_T 50S ribosomal protein L 55.9 11 0.00037 27.5 3.5 33 67-99 39-71 (120)
51 2ot2_A Hydrogenase isoenzymes 55.7 33 0.0011 23.6 5.9 61 34-103 5-67 (90)
52 3u5e_Y L33, YL33, 60S ribosoma 55.0 11 0.00038 27.8 3.5 32 67-98 46-77 (127)
53 2je6_I RRP4, exosome complex R 53.1 22 0.00076 28.3 5.3 76 28-104 71-170 (251)
54 4a17_S RPL26, 60S ribosomal pr 52.5 13 0.00044 27.7 3.5 32 67-98 45-76 (135)
55 3cw2_C Translation initiation 52.3 14 0.00046 29.8 3.9 67 28-95 8-82 (266)
56 3j21_U 50S ribosomal protein L 51.9 10 0.00036 27.6 2.9 40 59-98 29-73 (121)
57 1y14_B B16, RPB7, DNA-directed 50.2 34 0.0012 25.2 5.6 58 27-86 79-152 (171)
58 4b4t_I 26S protease regulatory 50.2 27 0.00093 30.4 5.7 53 30-83 101-153 (437)
59 2d9r_A Conserved hypothetical 45.0 16 0.00056 25.7 3.0 46 37-82 55-102 (104)
60 2pi2_E Replication protein A 1 44.8 39 0.0013 24.9 5.1 45 34-82 48-93 (142)
61 2b8k_G B16, DNA-directed RNA p 44.2 42 0.0014 26.2 5.5 60 27-88 79-154 (215)
62 2zkr_t 60S ribosomal protein L 44.2 14 0.00049 27.7 2.7 31 68-98 46-77 (145)
63 3m9b_A Proteasome-associated A 43.7 33 0.0011 28.0 5.0 60 29-91 95-161 (251)
64 1h9m_A MODG, molybdenum-bindin 43.5 31 0.001 23.5 4.2 31 31-61 9-42 (145)
65 2nn6_G Exosome complex exonucl 42.9 31 0.0011 28.3 4.8 78 27-105 123-226 (289)
66 2id0_A Exoribonuclease 2; RNAs 42.6 83 0.0028 28.2 7.9 88 25-115 77-176 (644)
67 1go3_E DNA-directed RNA polyme 41.0 1.1E+02 0.0036 22.6 8.0 69 27-97 77-167 (187)
68 3d0f_A Penicillin-binding 1 tr 40.3 33 0.0011 23.3 3.9 50 29-81 31-94 (106)
69 3go5_A Multidomain protein wit 38.1 75 0.0026 25.7 6.3 64 29-95 151-214 (285)
70 2zjr_R 50S ribosomal protein L 37.9 14 0.00049 26.5 1.7 33 67-99 12-44 (115)
71 2ba0_A Archeal exosome RNA bin 36.2 85 0.0029 24.5 6.2 76 28-104 54-151 (229)
72 3u5c_c S33, YS27, 40S ribosoma 35.0 97 0.0033 20.4 5.5 45 33-83 7-60 (67)
73 3go5_A Multidomain protein wit 34.8 71 0.0024 25.8 5.7 64 31-97 70-136 (285)
74 2ja9_A Exosome complex exonucl 34.6 48 0.0016 25.1 4.3 77 29-106 5-108 (175)
75 2vnu_D Exosome complex exonucl 33.8 78 0.0027 29.0 6.3 61 32-93 671-757 (760)
76 2l66_A SSO7C4, transcriptional 33.5 9.1 0.00031 23.3 0.1 25 59-83 14-38 (53)
77 1yfb_A Transition state regula 33.0 9.3 0.00032 24.3 0.1 25 59-83 24-48 (59)
78 4dov_A ORC1, origin recognitio 32.8 35 0.0012 26.1 3.3 29 68-96 36-65 (163)
79 2f1l_A 16S rRNA processing pro 32.5 1.1E+02 0.0036 23.2 6.0 50 30-80 126-182 (187)
80 4b4t_K 26S protease regulatory 32.3 75 0.0026 27.1 5.7 51 30-81 91-141 (428)
81 2z0s_A Probable exosome comple 31.9 64 0.0022 25.1 4.8 57 28-85 63-129 (235)
82 1kca_A Repressor protein CI; g 31.2 28 0.00095 23.7 2.3 10 71-80 47-56 (109)
83 2hnf_A Repressor protein CI101 30.7 23 0.00078 24.8 1.8 22 70-92 63-84 (133)
84 1b9m_A Protein (mode); DNA-bin 30.0 44 0.0015 25.4 3.5 51 30-82 202-255 (265)
85 3m7n_A Putative uncharacterize 28.4 1E+02 0.0036 22.9 5.3 56 27-83 54-124 (179)
86 3kgz_A Cupin 2 conserved barre 28.4 1.6E+02 0.0056 21.0 7.2 57 53-109 63-140 (156)
87 2wp8_J Exosome complex exonucl 27.7 1.6E+02 0.0055 28.0 7.5 60 32-92 888-973 (977)
88 3r8s_U 50S ribosomal protein L 27.6 44 0.0015 23.5 2.8 28 70-97 3-30 (102)
89 2qgg_A 16S rRNA-processing pro 26.8 1.3E+02 0.0043 22.5 5.5 48 31-80 122-177 (182)
90 1umu_A UMUD'; induced mutagene 26.2 32 0.0011 23.3 1.9 38 38-81 29-66 (116)
91 3jsy_A Acidic ribosomal protei 25.8 61 0.0021 25.1 3.6 44 62-116 142-186 (213)
92 4e2g_A Cupin 2 conserved barre 25.3 1.5E+02 0.005 19.4 7.6 71 33-103 40-120 (126)
93 2equ_A PHD finger protein 20-l 24.7 85 0.0029 20.6 3.7 26 31-56 22-48 (74)
94 1mvf_D MAZE protein, PEMI-like 24.6 22 0.00074 23.2 0.7 30 53-82 9-38 (82)
95 4eqp_A Thermonuclease; staphyl 24.5 1.5E+02 0.0051 21.1 5.4 76 32-108 8-102 (143)
96 3bdn_A Lambda repressor; repre 24.4 37 0.0013 25.3 2.1 26 70-96 159-184 (236)
97 3psi_A Transcription elongatio 24.2 1.3E+02 0.0045 29.5 6.3 70 31-101 902-978 (1219)
98 2xzm_L 40S ribosomal protein S 24.2 57 0.0019 24.5 3.0 49 32-81 46-105 (142)
99 2nn6_H Exosome complex exonucl 24.0 51 0.0018 27.2 3.0 55 28-83 92-162 (308)
100 2eqj_A Metal-response element- 23.7 1.3E+02 0.0044 19.7 4.4 31 30-60 25-57 (66)
101 3k2z_A LEXA repressor; winged 23.5 39 0.0014 25.0 2.1 40 56-96 109-148 (196)
102 1b12_A Signal peptidase I; ser 23.2 28 0.00097 27.0 1.3 11 71-81 50-60 (248)
103 2glw_A PHS018, 92AA long hypot 23.2 15 0.00051 25.2 -0.3 26 59-84 62-87 (92)
104 2kke_A Uncharacterized protein 22.4 60 0.002 20.1 2.4 23 88-112 13-35 (53)
105 3j20_N 30S ribosomal protein S 22.3 64 0.0022 24.3 3.0 49 32-81 48-107 (147)
106 3au7_A TIAS, putative uncharac 22.2 67 0.0023 27.7 3.5 50 33-82 288-345 (402)
107 3j21_k Acidic ribosomal protei 21.8 75 0.0026 26.4 3.6 45 61-116 145-190 (339)
108 3bdl_A Staphylococcal nuclease 21.7 1.5E+02 0.005 25.9 5.7 35 29-63 20-54 (570)
109 3cdi_A Polynucleotide phosphor 21.6 20 0.00067 33.1 0.0 64 29-94 625-694 (723)
110 1ci3_M Protein (cytochrome F); 21.2 2.2E+02 0.0075 23.1 6.1 70 9-80 152-224 (249)
111 3u5c_X RP37, S28, YS14, 40S ri 21.1 71 0.0024 24.1 3.0 50 31-81 46-106 (145)
112 4hcz_A PHD finger protein 1; p 20.6 1.8E+02 0.006 18.6 4.7 32 30-61 15-48 (58)
113 3p42_A Predicted protein; beta 20.6 1.5E+02 0.0051 23.2 5.0 38 46-83 167-204 (236)
No 1
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=100.00 E-value=1.7e-52 Score=321.38 Aligned_cols=138 Identities=74% Similarity=1.199 Sum_probs=128.4
Q ss_pred CCCCCCCCcccccCCCcccccceeeccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEe
Q 032228 2 PKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGL 81 (145)
Q Consensus 2 p~~~~~g~kn~rr~~~~~~~~~~el~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~ 81 (145)
|+||||||||+||+|+.++...+++++|+++|++|+|+++|||++|+|+|+||+++|||||||||++|||++||+|+|++
T Consensus 1 p~~~gkggk~~~r~K~~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 1 PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp CCCCCSSSSSSCCCCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred CCCCCCCCcccccccccchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 89999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEcChhHHHHHHHcCCCCcccccccccccCCCCCCCCCCCCCccc----cC-ccccCC
Q 032228 82 RDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIDDDDEAGPDNYIEF----ED-EDIDRI 145 (145)
Q Consensus 82 ~~~~~~Kg~Ii~ry~~deik~Lrk~g~wP~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~ 145 (145)
|+|+++||+|+|||+++|++||+++|+||++|.++++++ |+++ ++++++| ++ ++||+|
T Consensus 81 ~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~--~~~~----~~~~~~f~~~~~~~~~~~~~ 143 (143)
T 1d7q_A 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT--FGPG----DDDEIQFDDIGDDDEDIDDI 143 (143)
T ss_dssp SSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCS--SSCC----CCCCCCCCCSCSSCCSCSCC
T ss_pred ccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcccc--ccCC----CCccceeccCccchhccccC
Confidence 999999999999999999999999999999999999999 8732 2346666 22 378876
No 2
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.7e-44 Score=268.21 Aligned_cols=117 Identities=73% Similarity=1.260 Sum_probs=93.1
Q ss_pred CCCCCCCCCcccccCCCcccccceeeccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEE
Q 032228 1 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVG 80 (145)
Q Consensus 1 mp~~~~~g~kn~rr~~~~~~~~~~el~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe 80 (145)
||+||||||||+||+|+.++...+++++|+++|++|+|++++||++|.|+|+||++++|+||||||++|||++||+|+|+
T Consensus 1 ~~~~~~~g~k~~~r~k~~~~~~~~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve 80 (117)
T 2oqk_A 1 MPKNKGKGGKNRRRGKNDSEGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVS 80 (117)
T ss_dssp ---------------------CCCCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEE
T ss_pred CCCCCCCCCCcccccccccchhhhhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCceEEEEEcChhHHHHHHHcCCCCccccccc
Q 032228 81 LRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNE 117 (145)
Q Consensus 81 ~~~~~~~Kg~Ii~ry~~deik~Lrk~g~wP~~f~~~~ 117 (145)
+++|++++|+|+|+|.++|++||+++|+||++|.+|+
T Consensus 81 ~~~~~~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~~~ 117 (117)
T 2oqk_A 81 LRDFQDSKGDIILKYTPDEARALKSKGEIPETTKINE 117 (117)
T ss_dssp ECTTCTTEEEEEEECCHHHHHHHHHTTSSCTTCCC--
T ss_pred EEcCCCCeEEEEEEechHHHHHHHHcCCCCcccCccC
Confidence 9999999999999999999999999999999999874
No 3
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=6.7e-39 Score=236.90 Aligned_cols=103 Identities=26% Similarity=0.344 Sum_probs=97.7
Q ss_pred ccceeeccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCC-CCceEEEEEcChhH
Q 032228 21 DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQ-DDKADVILKYMPDE 99 (145)
Q Consensus 21 ~~~~el~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~-~~Kg~Ii~ry~~de 99 (145)
.+.+++++|+++|++|+|++++||++|+|+|+||+++|||||||||++|||++||+|+|++|+|+ ++||+|+|||+++|
T Consensus 4 ~~l~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~q 83 (111)
T 2dgy_A 4 GSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDH 83 (111)
T ss_dssp CCCCSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHHH
T ss_pred hhhccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHcCCCCccccc-ccccccCCCC
Q 032228 100 ARLLKAYGELPETTRL-NEGIAAGIDD 125 (145)
Q Consensus 100 ik~Lrk~g~wP~~f~~-~~~~~~~~~~ 125 (145)
+++|+++|+||++|.. .+.|+ +|+
T Consensus 84 vk~L~k~g~wP~~F~~~~~~~~--~~~ 108 (111)
T 2dgy_A 84 VRSLQKEGFWPEAFSEVAEKHN--SGP 108 (111)
T ss_dssp HHHHHHHTCSCHHHHHHHTTCC--SSS
T ss_pred HHHHHHcCCCChHHhhcccccC--cCC
Confidence 9999999999999987 46777 554
No 4
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=100.00 E-value=2.5e-36 Score=220.27 Aligned_cols=89 Identities=28% Similarity=0.598 Sum_probs=86.0
Q ss_pred cceeeccCC--CCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCC-CCceEEEEEcChh
Q 032228 22 EKRELIFKE--DGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQ-DDKADVILKYMPD 98 (145)
Q Consensus 22 ~~~el~~p~--e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~-~~Kg~Ii~ry~~d 98 (145)
..+++++|+ ++|++|+|++++||++|+|+|+||+++|||||||||++|||++||+|+|++|+|+ ++||+|+|||+++
T Consensus 8 ~~~~~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~d 87 (102)
T 1jt8_A 8 QQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp CCCCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred cceecccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEeCHH
Confidence 466788877 9999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHcCCCC
Q 032228 99 EARLLKAYGELP 110 (145)
Q Consensus 99 eik~Lrk~g~wP 110 (145)
|++||+++|+||
T Consensus 88 e~~~L~k~g~~p 99 (102)
T 1jt8_A 88 QVEWLKRKGYLD 99 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCc
Confidence 999999999999
No 5
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=99.89 E-value=7.3e-24 Score=148.23 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=63.2
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 32 GQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHK-KVWIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
-++.|+|++++||+.|.|+|+||++++|+|+||||+ +|||.+||+|+|++|||+++||+|+|||.
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~~ 79 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence 589999999999999999999999999999999999 99999999999999999999999999983
No 6
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.84 E-value=8.8e-22 Score=133.80 Aligned_cols=65 Identities=28% Similarity=0.317 Sum_probs=61.9
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 32 GQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHK-KVWIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
.++.|+|++++||+.|.|+|+||++++|++|||||+ .||+++||+|+|++++|++.+|+|+|||.
T Consensus 6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~~r~~ 71 (71)
T 1ah9_A 6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEEEEEC
Confidence 457899999999999999999999999999999998 69999999999999999999999999984
No 7
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.83 E-value=3.1e-22 Score=136.29 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=61.8
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 32 GQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHK-KVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
.++.|+|++++||+.|.|+|+||++++|++|||||+ +|||++||+|+|++++|++.+|+|+|||
T Consensus 7 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~~r~ 71 (71)
T 1hr0_W 7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK 71 (71)
T ss_dssp CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEEEeC
Confidence 567899999999999999999999999999999997 9999999999999999999999999997
No 8
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.27 E-value=0.00098 Score=56.65 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=47.3
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCCC----CceEEEEEcCh
Q 032228 33 QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQD----DKADVILKYMP 97 (145)
Q Consensus 33 q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~~----~Kg~Ii~ry~~ 97 (145)
.+.|+|++..| +.|.|.+++|..+.|+++|+|+. +..||+|.+++.+.+. .+|.|..++.+
T Consensus 47 ~~~g~Vi~~~~-~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R 111 (358)
T 2rcn_A 47 PAEGIVISRFG-MHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKAAAEGVNVKGIVEAVHER 111 (358)
T ss_dssp CEEEEEEEEET-TEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC-------CCEEEEEECCC
T ss_pred cceEEEEEEEC-CEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCCccccccccceEeEEeCC
Confidence 36899999776 58889999999999999999986 8899999998754221 13777766654
No 9
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.14 E-value=0.0011 Score=55.13 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=46.5
Q ss_pred EEEEEEeCCCceEEEEeCC---CCEEEEEecccccc-eEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 35 YAQVLRMLGNGRCEAMCID---GAKRLCHIRGKMHK-KVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 35 ig~Vv~~lG~~~~~V~~~d---G~~~la~IpGK~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
.|+|++..| +.|.|.+++ |..+.|+++|+||+ .+.+..||+|.+++.+ ...|.|...+
T Consensus 12 ~g~vi~~~~-~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~ 73 (307)
T 1t9h_A 12 EGKIIKALS-GFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIK 73 (307)
T ss_dssp EEEEEEEET-TEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEEC
T ss_pred CeEEEEEEC-CEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEc
Confidence 588998776 678898876 88999999999997 6778899999998653 3356666555
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.46 E-value=0.01 Score=48.22 Aligned_cols=49 Identities=24% Similarity=0.137 Sum_probs=40.5
Q ss_pred CeEEEEEEEeCCCceE--EEEeCCCCEEEEEecccccc-eEEEccCCEEEEEecc
Q 032228 32 GQEYAQVLRMLGNGRC--EAMCIDGAKRLCHIRGKMHK-KVWIGAGDIILVGLRD 83 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~--~V~~~dG~~~la~IpGK~Rk-~IwIk~GD~VlVe~~~ 83 (145)
+-+.|+|++..+ +.| .|. .+|..+.|+++|+||+ .+ ...||+|.+++++
T Consensus 5 ~~~~g~v~~~~~-~~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~ 56 (302)
T 2yv5_A 5 ELKRGLVVDREA-QMIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD 56 (302)
T ss_dssp CCEEEEEEEEET-TEEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE
T ss_pred CceeEEEEEeeC-CeEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc
Confidence 456899999886 566 555 7788999999999997 55 8899999999876
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.013 Score=39.05 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=53.0
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceE-EEccCCEEEEEeccCCCCceEEEEEcCh
Q 032228 32 GQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKV-WIGAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~I-wIk~GD~VlVe~~~~~~~Kg~Ii~ry~~ 97 (145)
..+.|+|+.+...+.| |.+.++..=|++++.=...++ .++.||.|.|.....+..+++|...+.+
T Consensus 7 ~iv~G~V~~v~~~G~f-V~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 7 KFYKGVVTRIEKYGAF-INLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CEEEEEEEEEETTEEE-EEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CEEEEEEEEEeCCEEE-EEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 4589999999998888 899889888888886333343 5899999999999988888998776643
No 12
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=94.96 E-value=0.056 Score=41.53 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=53.9
Q ss_pred CcccccceeeccCCCCeEEEEEEEeCCC-ceEEEEeCCCCEEEEEecccccce-E----------------EEccCCEEE
Q 032228 17 NEADDEKRELIFKEDGQEYAQVLRMLGN-GRCEAMCIDGAKRLCHIRGKMHKK-V----------------WIGAGDIIL 78 (145)
Q Consensus 17 ~~~~~~~~el~~p~e~q~ig~Vv~~lG~-~~~~V~~~dG~~~la~IpGK~Rk~-I----------------wIk~GD~Vl 78 (145)
||+-.+..-..++.-| .++.|.++++. ++..|....|.++++++++.+... + .+++||-|+
T Consensus 53 NEal~VVea~~~~~~G-ev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsll 131 (153)
T 2wfw_A 53 NEALTIVEAGTYEQVG-EISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLL 131 (153)
T ss_dssp CTTCCEEEECCCCCSE-EEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEE
T ss_pred CCceEEEEccCCCCcc-CEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEE
Confidence 4443333333333333 57889999998 899999999999999999999763 2 699999999
Q ss_pred EEeccCCCCceEEEEEcChhHHHHH
Q 032228 79 VGLRDYQDDKADVILKYMPDEARLL 103 (145)
Q Consensus 79 Ve~~~~~~~Kg~Ii~ry~~deik~L 103 (145)
|++. .|-...+..+.|+..|
T Consensus 132 vD~r-----ag~A~E~ipk~eVe~L 151 (153)
T 2wfw_A 132 VDTK-----AGYAFERIPKAEVEDL 151 (153)
T ss_dssp EETT-----TTEEEEEECSCC----
T ss_pred EcCC-----CceEEEEcCccchhhh
Confidence 9975 3556666666666655
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=94.49 E-value=0.09 Score=37.23 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=52.2
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccc-----cc-eEEEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 32 GQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKM-----HK-KVWIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~-----Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
..+.|+|+.+...+.| |.+.+|..-|++++.-. ++ .-.++.||.|.|.....+..+++|...+.
T Consensus 32 ~~~~G~V~~v~~~G~F-V~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk 101 (115)
T 2khi_A 32 TKLTGRVTNLTDYGCF-VEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 101 (115)
T ss_dssp CEEEEEEEEEETTEEE-EECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCC
T ss_pred CEEEEEEEEEECCEEE-EEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEE
Confidence 4589999999999888 99999999999987532 22 34689999999999998888888877554
No 14
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=92.29 E-value=0.54 Score=32.21 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=45.5
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccC
Q 032228 30 EDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDY 84 (145)
Q Consensus 30 ~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~ 84 (145)
.....+|.|+++++.+.+-|....|.++++.+.+.+-+. -+++|+.|.+....|
T Consensus 16 ~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~-~LkpG~rVaLn~~s~ 69 (85)
T 3h43_A 16 VPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPD-DLAPGKRVCLNQQTL 69 (85)
T ss_dssp SCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGG-GCCTTCEEEECTTTC
T ss_pred CCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHH-HCCCCCEEEECCccc
Confidence 457899999999999999999999999999999988752 258999988765443
No 15
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=91.56 E-value=0.6 Score=33.22 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=45.7
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccC
Q 032228 30 EDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDY 84 (145)
Q Consensus 30 ~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~ 84 (145)
.....+|.|+++++.+.+.|...+|.++++.+.+.+-+.- +++|+.|.+....|
T Consensus 35 ~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~-LkpG~rVaLn~~s~ 88 (109)
T 2wg5_A 35 SPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEE-LKPGARVALNQQTL 88 (109)
T ss_dssp SCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTT-CCTTCEEEEETTTC
T ss_pred CCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHH-CCCCCEEEECCcce
Confidence 3478999999999999999999999999999999887532 78898888875444
No 16
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=87.63 E-value=1.6 Score=31.44 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=51.0
Q ss_pred CCC-eEEEEEEEeCCCceEEEEeCCCCEEEEEecccc----cc-eEEEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 30 EDG-QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKM----HK-KVWIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 30 ~e~-q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~----Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
..| .+.|+|+.+...+.| |.+.+|..=|+|++-=. .. .-.++.||.|.|.....+..++.|...+.
T Consensus 6 ~vG~iv~G~V~~i~~~G~F-V~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 6 EVGSVYTGKVTGLQAYGAF-VALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CTTCEEEEEEEEEETTEEE-EEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CCCCEEEEEEEEEeCCeEE-EEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 334 469999999888766 88888999999986432 11 23588999999999988877888877664
No 17
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=87.29 E-value=1.7 Score=35.65 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=48.5
Q ss_pred CcccccceeeccCCCCeEEEEEEEeC-CCceEEEEeCCCCEEEEEecccccce--E--------------EEccCCEEEE
Q 032228 17 NEADDEKRELIFKEDGQEYAQVLRML-GNGRCEAMCIDGAKRLCHIRGKMHKK--V--------------WIGAGDIILV 79 (145)
Q Consensus 17 ~~~~~~~~el~~p~e~q~ig~Vv~~l-G~~~~~V~~~dG~~~la~IpGK~Rk~--I--------------wIk~GD~VlV 79 (145)
|+.-.+..-++.+.-| .++.|.+++ ++.+..|....|.++++++++.+... . .+++||-|+|
T Consensus 144 NeSlaVVevLp~E~~G-ev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllv 222 (251)
T 3m9b_A 144 NEALTVVEAGTFEAVG-EISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLV 222 (251)
T ss_dssp CTTCCBCCCCCCCCCS-EEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEE
T ss_pred CCccEEEEecCCCCcc-cEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEE
Confidence 3333333444433334 567888889 66799999999999999999999753 1 6899999999
Q ss_pred Eec
Q 032228 80 GLR 82 (145)
Q Consensus 80 e~~ 82 (145)
++.
T Consensus 223 D~r 225 (251)
T 3m9b_A 223 DTK 225 (251)
T ss_dssp CTT
T ss_pred eCC
Confidence 986
No 18
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=87.07 E-value=1 Score=34.66 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=25.1
Q ss_pred EEEEEEeCCCceEEEEeCCCCEEEEEec
Q 032228 35 YAQVLRMLGNGRCEAMCIDGAKRLCHIR 62 (145)
Q Consensus 35 ig~Vv~~lG~~~~~V~~~dG~~~la~Ip 62 (145)
-|+|.+.+++++|+|.+.||..-.++.+
T Consensus 27 pG~V~~~~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 27 SGKITRDVGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp EEEEEECCTTTEEEEECTTSCEEEEETT
T ss_pred ccEEEEeccCCEEEEEEcCCCeeEeecc
Confidence 5999999999999999999998877644
No 19
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=86.47 E-value=0.77 Score=31.15 Aligned_cols=66 Identities=9% Similarity=0.017 Sum_probs=48.8
Q ss_pred eeccCCCCe-EEEEEEEeCCCceEEEEeCC--CCEEEEEec-c----cccc--eEEEccCCEEEEEeccCCCCceEEEEE
Q 032228 25 ELIFKEDGQ-EYAQVLRMLGNGRCEAMCID--GAKRLCHIR-G----KMHK--KVWIGAGDIILVGLRDYQDDKADVILK 94 (145)
Q Consensus 25 el~~p~e~q-~ig~Vv~~lG~~~~~V~~~d--G~~~la~Ip-G----K~Rk--~IwIk~GD~VlVe~~~~~~~Kg~Ii~r 94 (145)
.+..|..|+ ..|+|+ +...+.| |++.+ |..=|+|++ - ++.. .+. .||.|.|.....+..+++|...
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~F-Vel~~~~~~eGLvhis~el~~~~~~~~~~~~--~Gd~V~VkV~~vd~~~~kI~ls 80 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALY-IYLFDYPHFEAILAESVKMHMDRYVEYRDKL--VGKTVKVKVIRVDYTKGYIDVN 80 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEE-EEETTCTTSEEEEGGGSSCCHHHHHHHHHHH--TTCEEEEEEEEEETTTTEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEE-EEECCCCCeEEEEEeeHHhCcccccCHhHEe--CCCEEEEEEEEEECCCCEEEEE
Confidence 455677665 688998 8888876 77764 799999999 2 3322 223 9999999999888888888554
No 20
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=86.44 E-value=2.6 Score=32.41 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=48.2
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEe--CCCCEEEEEecc----cccc-eEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 29 KEDG-QEYAQVLRMLGNGRCEAMC--IDGAKRLCHIRG----KMHK-KVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 29 p~e~-q~ig~Vv~~lG~~~~~V~~--~dG~~~la~IpG----K~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
|..| .+.|+|+.+...+.| |.+ .+|..=|+|++- +++. +=.++.||.|.|.....+..+++|..-+
T Consensus 13 p~~G~iv~G~V~~I~~fGaF-V~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSl 86 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAY-VSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSK 86 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEE-EEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEES
T ss_pred CCCCCEEEEEEEEEeccEEE-EEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEE
Confidence 4555 478999999988877 788 578888999874 3333 4468999999999999888889987655
No 21
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=83.72 E-value=1.6 Score=30.21 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=48.0
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeCCCCEEEEEeccccc----c-eEEEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 29 KEDG-QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMH----K-KVWIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 29 p~e~-q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~R----k-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
+..| .+.|+|+.+...+.| |.+.+|..=|++++-=.. . .-.++.||.|.|.....+..+++|...+.
T Consensus 29 ~~~G~iv~G~V~~v~~~G~f-V~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k 101 (109)
T 2khj_A 29 NKKGAIVTGKVTAVDAKGAT-VELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 101 (109)
T ss_dssp CCSSSEEEEEEEEECSSCEE-EECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETT
T ss_pred CCCCCEEEEEEEEEECCeEE-EEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 3445 478999999988876 888888776666653211 1 22588999999999988777777766543
No 22
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=80.50 E-value=7.2 Score=28.80 Aligned_cols=47 Identities=17% Similarity=0.012 Sum_probs=32.1
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEccCCEEEEEe
Q 032228 33 QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHK-KVWIGAGDIILVGL 81 (145)
Q Consensus 33 q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk-~IwIk~GD~VlVe~ 81 (145)
=--|+|++.+|+++|+|.+.||.+..+. +|+-- .=-|-.|--|+...
T Consensus 21 yYpG~V~~~~~~~ky~V~FdDg~~~~v~--~k~iiv~d~ip~g~~V~A~t 68 (123)
T 2g3r_A 21 FYSGKITRDVGAGKYKLLFDDGYECDVL--GKDILLCDPIPLDTEVTALS 68 (123)
T ss_dssp EEEEEEEEEEETTEEEEEETTSCEEEEE--GGGEECCSSCCTTCEEEEEC
T ss_pred CcccEEEEeccCCeEEEEEcCCCeeEee--cceEEEecccCCCcEEEEee
Confidence 4568999999999999999999987654 22211 00233466666554
No 23
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=80.15 E-value=6.7 Score=29.78 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=50.2
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccc-eEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 28 FKEDG-QEYAQVLRMLGNGRCEAMCI--DGAKRLCHIRG----KMHK-KVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 28 ~p~e~-q~ig~Vv~~lG~~~~~V~~~--dG~~~la~IpG----K~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
+|..| .+.|+|+.+...+.| |.+. +|..=|+|++- +.+. +=.++.||.|.|.....+..+++|..-+
T Consensus 12 ~p~~G~iv~G~V~~i~~fGaF-V~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSl 86 (175)
T 2a19_A 12 YPEIDDIVMVNVQQIAEMGAY-VKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSK 86 (175)
T ss_dssp SCCTTCEEEEEEEEEETTEEE-EEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEES
T ss_pred CCCCCCEEEEEEEEEecceEE-EEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEE
Confidence 45445 578999999888877 7774 78899999874 2222 3458899999999998888888887655
No 24
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=77.97 E-value=3.9 Score=25.24 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=38.1
Q ss_pred CCeEEEEEEEeC-CCceEEEEe--CCCCEEEEEecccccceEEEccCCEEEEEec
Q 032228 31 DGQEYAQVLRML-GNGRCEAMC--IDGAKRLCHIRGKMHKKVWIGAGDIILVGLR 82 (145)
Q Consensus 31 e~q~ig~Vv~~l-G~~~~~V~~--~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~ 82 (145)
.|++-|+|.++. ++...+|.+ .+|....|.|+..--...-+.+|+.|.+...
T Consensus 6 rN~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 6 RNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVK 60 (68)
T ss_dssp SCEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEECC
T ss_pred ceEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEEEe
Confidence 478889998874 444455554 5688899999866556777899999988754
No 25
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=75.98 E-value=13 Score=26.50 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=37.3
Q ss_pred EEEEEEeCCC-ceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCCCCceEEEEEcChhHHHHH
Q 032228 35 YAQVLRMLGN-GRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 103 (145)
Q Consensus 35 ig~Vv~~lG~-~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~deik~L 103 (145)
-++|+++.++ +.-.|.. .|.++.+++.== -- -++.||||||.. |-.+.++.+++++..
T Consensus 27 P~kVveI~~~~~~A~Vd~-~Gv~reV~l~Lv--~e-~~~vGDyVLVHv-------GfAi~kIDeeeA~et 85 (103)
T 3d3r_A 27 PSQVVAVDNERQSVTVDT-LGVRRDVSSHLM--TE-PLAIGDYVLIHI-------GFVMNKIDRNDALQS 85 (103)
T ss_dssp CEEEEEEETTTTEEEEEE-TTEEEEEECTTB--SS-CCCTTCEEEEEE-------EEEEEEECHHHHHHH
T ss_pred CEEEEEEeCCCCEEEEEc-CCEEEEEEEEee--cC-CCCCCCEEEEee-------chhhhhCCHHHHHHH
Confidence 4778888654 4444433 477766654310 00 156799999986 567888888888764
No 26
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=75.82 E-value=8.1 Score=31.45 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=52.1
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC--CCCEEEEEecccccc-----eEEEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 28 FKEDG-QEYAQVLRMLGNGRCEAMCI--DGAKRLCHIRGKMHK-----KVWIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 28 ~p~e~-q~ig~Vv~~lG~~~~~V~~~--dG~~~la~IpGK~Rk-----~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
.|..| .+.|+|+.+...+.| |.+. +|..=|+|++-=... .-.++.||.|.|.....+..+++|..-+.
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaF-V~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk 83 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAF-LELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLR 83 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEE-EEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCCEEEEEEEEEECcEEE-EEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 35444 589999999888877 7776 699999998753222 23589999999999998888888866653
No 27
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=73.91 E-value=17 Score=24.26 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=36.7
Q ss_pred EEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCCCCceEEEEEcChhHHHHH
Q 032228 35 YAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 103 (145)
Q Consensus 35 ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~deik~L 103 (145)
-++|+++ .++.-.|.. .|.++.+++.== -- ++.||||||.. |-.+.++.+++++..
T Consensus 6 P~kVvei-~~~~A~vd~-~Gv~r~V~l~Lv--~~--~~vGD~VLVH~-------GfAi~~ideeeA~et 61 (75)
T 2z1c_A 6 PGKVIEV-NGPVAVVDF-GGVKREVRLDLM--PD--TKPGDWVIVHT-------GFAIEKLDEKKAMEI 61 (75)
T ss_dssp CEEEEEE-ETTEEEEEE-TTEEEEEECTTS--TT--CCTTCEEEEET-------TEEEEEECHHHHHHH
T ss_pred cEEEEEE-CCCEEEEEc-CCEEEEEEEEEe--CC--CCCCCEEEEec-------chhhhhCCHHHHHHH
Confidence 3678887 555555544 677776654311 11 47899999985 566788888887654
No 28
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=73.69 E-value=5.1 Score=24.34 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=36.7
Q ss_pred CCeEEEEEEEeC-CCceEEEEeC-CCCEEEEEecccccceEEEccCCEEEEEecc
Q 032228 31 DGQEYAQVLRML-GNGRCEAMCI-DGAKRLCHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 31 e~q~ig~Vv~~l-G~~~~~V~~~-dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
.|++-|+|+.+. ++...+|.+. .|....|.++..--...-+.+|+.|.+...+
T Consensus 6 ~N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~ika 60 (67)
T 1fr3_A 6 RNKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKA 60 (67)
T ss_dssp CEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEECG
T ss_pred ceEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEEec
Confidence 477888888874 4455666553 3337888887655556778999999887643
No 29
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=73.30 E-value=5.2 Score=28.52 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=26.5
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecc
Q 032228 34 EYAQVLRMLGNGRCEAMCIDGAKRLCHIRG 63 (145)
Q Consensus 34 ~ig~Vv~~lG~~~~~V~~~dG~~~la~IpG 63 (145)
++|+|++..| +.+.+.|.||..+.+.++.
T Consensus 23 ivGkV~~~~g-~~~~l~s~d~~~Vtv~l~~ 51 (114)
T 4gop_A 23 IVGKVHKVTG-NTLLMQTSDLGNVEIAMTP 51 (114)
T ss_dssp EEEEEEEEET-TEEEEECTTSCEEEEECCS
T ss_pred EEEEEeeeCC-CEEEEEeCCCCEEEEEeCC
Confidence 7999999998 8999999999999988874
No 30
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=69.35 E-value=16 Score=32.95 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=49.8
Q ss_pred eEEEEEEEeCCCceEEEEe-CCCCEEEEEecc------cc-----------cceEEEccCCEEEEEeccCCCCceEEEEE
Q 032228 33 QEYAQVLRMLGNGRCEAMC-IDGAKRLCHIRG------KM-----------HKKVWIGAGDIILVGLRDYQDDKADVILK 94 (145)
Q Consensus 33 q~ig~Vv~~lG~~~~~V~~-~dG~~~la~IpG------K~-----------Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~r 94 (145)
...|+|+.+...+.| |++ ..|..-++|++. .+ +..-.++.||.|.|.....+..++.|.+.
T Consensus 563 ~f~g~V~~V~~~G~f-V~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~ 641 (644)
T 2id0_A 563 RFAAEIVDISRGGMR-VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 (644)
T ss_dssp CEEEEEEEEETTEEE-EEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEE
T ss_pred eEEEEEEEEeCCceE-EEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 588999999999888 777 579999999942 21 22346899999999999888888898876
Q ss_pred c
Q 032228 95 Y 95 (145)
Q Consensus 95 y 95 (145)
+
T Consensus 642 l 642 (644)
T 2id0_A 642 P 642 (644)
T ss_dssp E
T ss_pred E
Confidence 5
No 31
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=66.50 E-value=7.1 Score=29.73 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=34.7
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEec
Q 032228 34 EYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLR 82 (145)
Q Consensus 34 ~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~ 82 (145)
+.|+|++. +++.+.+....|.-.++.+..=.+-+=|++.|.||.|--.
T Consensus 63 mQG~VV~~-~~g~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G~ 110 (150)
T 3mxn_B 63 MQGRVVMA-DRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGV 110 (150)
T ss_dssp EEEEEEEE-ETTEEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEEE
T ss_pred EEeEEEEe-CCCeEEEECCCceEEEeeccccCCCCcccCCCCEEEEEEE
Confidence 67999996 7788888887775444444433344789999999998643
No 32
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=66.44 E-value=6.7 Score=29.41 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=36.9
Q ss_pred CeEEEEEEEeCC------Cc----eEEEEeCCCCEEEEEecccccceEEEccCCEEEEEec
Q 032228 32 GQEYAQVLRMLG------NG----RCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLR 82 (145)
Q Consensus 32 ~q~ig~Vv~~lG------~~----~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~ 82 (145)
-|.-|.|++..+ |+ ..+|.+.||.+++|.|||== -.+.+.|.|||.--
T Consensus 31 Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL~ngk~VtAyIPG~G---hnlqEhs~VLVrGg 88 (135)
T 2vqe_L 31 PFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEG---HNLQEHSVVLIRGG 88 (135)
T ss_dssp SEEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSC---CCCCTTCEEEEEEC
T ss_pred CCcCeEEEEEEecCCCCCchhheeEEEEEcCCCCEEEEEcCCCC---CccCcCCEEEEcCC
Confidence 466677766653 22 35789999999999999976 56899999999844
No 33
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=65.27 E-value=8.7 Score=31.87 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=49.9
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccc-eEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 28 FKEDG-QEYAQVLRMLGNGRCEAMCI--DGAKRLCHIRG----KMHK-KVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 28 ~p~e~-q~ig~Vv~~lG~~~~~V~~~--dG~~~la~IpG----K~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
.|..| .+.|+|+.+...+.| |.+. +|..=|+|++- +.++ .-.++.||.|.|.....+..+++|..-+
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaF-V~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSl 84 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAY-VSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSK 84 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEE-EESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEE-EEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 34444 589999999988876 7776 68888888763 2222 3358899999999998888888886544
No 34
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=64.75 E-value=16 Score=29.03 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCceEEEEeCC-CCEEEEEeccccc-ceEEEccCCEEEEE
Q 032228 34 EYAQVLRMLGNGRCEAMCID-GAKRLCHIRGKMH-KKVWIGAGDIILVG 80 (145)
Q Consensus 34 ~ig~Vv~~lG~~~~~V~~~d-G~~~la~IpGK~R-k~IwIk~GD~VlVe 80 (145)
+.|+|++..+ +.|.|.+.+ |....+.+.|+|. ...---.||.|.+.
T Consensus 11 ~~g~v~~~~~-~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~ 58 (301)
T 1u0l_A 11 RRGIVVSFHS-NMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYT 58 (301)
T ss_dssp EEEEEEEEET-TEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEE
T ss_pred eeEEEEEeeC-CEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEE
Confidence 4799998776 677888776 8999999999998 44434467777654
No 35
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=64.28 E-value=12 Score=24.56 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=26.0
Q ss_pred CCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEe
Q 032228 30 EDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCHI 61 (145)
Q Consensus 30 ~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~I 61 (145)
.++. --|+|+++.+++.|.|...||.+..+..
T Consensus 18 ~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~ 50 (67)
T 3p8d_A 18 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKH 50 (67)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEG
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeH
Confidence 3444 6799999999999999999988776653
No 36
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=63.68 E-value=13 Score=26.71 Aligned_cols=30 Identities=3% Similarity=-0.125 Sum_probs=26.9
Q ss_pred EEEEEEEeCC-CceEEEEeCCCCEEEEEecc
Q 032228 34 EYAQVLRMLG-NGRCEAMCIDGAKRLCHIRG 63 (145)
Q Consensus 34 ~ig~Vv~~lG-~~~~~V~~~dG~~~la~IpG 63 (145)
++|+|+++.+ +..+.+.|.||.++.+.++.
T Consensus 27 ivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~ 57 (121)
T 3kdf_A 27 FVGRLEKIHPTGKMFILSDGEGKNGTIELME 57 (121)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSS
T ss_pred EEEEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Confidence 7899999985 66999999999999999985
No 37
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=63.51 E-value=4.4 Score=29.16 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=25.7
Q ss_pred ccceEEEccCCEEEEEeccCCCCceEEEEEcChhH
Q 032228 65 MHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDE 99 (145)
Q Consensus 65 ~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~de 99 (145)
|+..+.|+.||.|.|---.+-...|.|+..|.+.+
T Consensus 1 ~~~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ 35 (110)
T 3v2d_Y 1 MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKY 35 (110)
T ss_dssp CCCCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGT
T ss_pred CCcccccCCCCEEEEeEcCCCCeEeEEEEEECCCC
Confidence 44567799999999976555456788888886543
No 38
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=62.77 E-value=14 Score=25.55 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCCe-EEEEEEEeCCCceEEEEeCCCCEEEEE
Q 032228 30 EDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCH 60 (145)
Q Consensus 30 ~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~ 60 (145)
.+++ .-|+|+.+.+++.|.|.+.||.+.++.
T Consensus 33 ~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk 64 (85)
T 3qii_A 33 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVK 64 (85)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCCeEEec
Confidence 3444 679999999999999999998877654
No 39
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=61.80 E-value=9.2 Score=26.22 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=36.5
Q ss_pred CeEEEEEEEeC-CCc--eEEEEeCCCCEEEEEecccccceEEEccCCEEEEEecc
Q 032228 32 GQEYAQVLRML-GNG--RCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 32 ~q~ig~Vv~~l-G~~--~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
+.+-|+|..+. ++. .+.|.+.+|....+.++..-....-+.+|+.|.+...+
T Consensus 82 N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~~l~l~~G~~V~~~~k~ 136 (145)
T 1h9m_A 82 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAVIKA 136 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHTTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHhhcCCCCCCEEEEEEcc
Confidence 67889988864 333 45566668899999988554344457789999887644
No 40
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=59.85 E-value=25 Score=24.29 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=46.6
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeC-CCCEEEEEecccc----c--c-eEEEccCCEEEEEeccCCCCceEEEEEcChh
Q 032228 29 KEDG-QEYAQVLRMLGNGRCEAMCI-DGAKRLCHIRGKM----H--K-KVWIGAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 29 p~e~-q~ig~Vv~~lG~~~~~V~~~-dG~~~la~IpGK~----R--k-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~d 98 (145)
+..| .+.|+|+.+...+.| |.+. .+.. +.++..-+ + . .=.++.||.|.|.....+..+++|...+...
T Consensus 19 l~~G~i~~G~V~~v~~fG~f-V~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 19 LKPGMLLTGTVSSLEDHGYL-VDIGVDGTR-AFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp CCTTCEEEEEEEEECSSEEE-EECCCSSCE-EEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred CCCCCEEEEEEEEEeCceEE-EEECCCCeE-EEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchh
Confidence 3444 589999999887766 7776 4554 44433221 1 1 2358899999999999888888887776543
No 41
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.54 E-value=35 Score=23.11 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeCC---CCEEEEEecccc-----cc-eEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 29 KEDG-QEYAQVLRMLGNGRCEAMCID---GAKRLCHIRGKM-----HK-KVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 29 p~e~-q~ig~Vv~~lG~~~~~V~~~d---G~~~la~IpGK~-----Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
+..| .+.|+|+.+...+.| |.+.+ +..=|+|++-=. ++ .-.++.||.|.|.....+. ++|...+
T Consensus 10 ~~vG~i~~G~V~~v~~fG~F-V~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 10 PTIGDIYNGKVTSIMQFGCF-VQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCTTCEEEEEEEEECSSCEE-EEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred CCCCCEEEEEEEEEeccEEE-EEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 4444 589999999998877 77775 888999987531 11 2348899999999887654 4665544
No 42
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=58.45 E-value=17 Score=27.74 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=36.2
Q ss_pred EEEEEEEeC-----CCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEE
Q 032228 34 EYAQVLRML-----GNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVG 80 (145)
Q Consensus 34 ~ig~Vv~~l-----G~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe 80 (145)
--|.++... ++.+|.|...|+.+- .+...--|++-++.||.|.|+
T Consensus 24 YPATcvg~~~~~~~~~~~y~VrFdDs~~~--~V~~~~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 24 YPATLVAPVHSAVTSSIMYKVQFDDATMS--TVNSNQIKRFFLKKGDVVQST 73 (153)
T ss_dssp EEEEEEEEECCSSCCBCEEEEEETTSCEE--EEETTSEEESCCCTTCEEEET
T ss_pred cceEEEccCCCcccCCeEEEEEEcCCCCC--ccChhhceeeeeecCCEEEEC
Confidence 345555555 789999999999777 666666789999999999998
No 43
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=57.93 E-value=17 Score=25.89 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=41.3
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEe
Q 032228 33 QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGL 81 (145)
Q Consensus 33 q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~ 81 (145)
.+.|.+++.+|+..|......| ++.+.|+-+.-.-.-|.+.|.|.+.-
T Consensus 41 ~L~G~Iv~~~~~d~Y~F~D~TG-~I~VeId~~~w~g~~v~p~~~Vri~G 88 (109)
T 1nnx_A 41 TLRGNIVERISDDLYVFKDASG-TINVDIDHKRWNGVTVTPKDTVEIQG 88 (109)
T ss_dssp EEEEEEEEEEETTEEEEEETTE-EEEEECCGGGSTTCCCCTTSCEEEEE
T ss_pred EEEEEEEEEeCCCeEEEECCCc-cEEEEEChhhcCCcccCCCCEEEEEE
Confidence 4789999999999999999999 78899998876667788888888764
No 44
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=57.14 E-value=22 Score=27.60 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=38.4
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC-----------CCCEEEEEecccccceE----EEccCCEEEEEeccCCCCceEE
Q 032228 28 FKEDG-QEYAQVLRMLGNGRCEAMCI-----------DGAKRLCHIRGKMHKKV----WIGAGDIILVGLRDYQDDKADV 91 (145)
Q Consensus 28 ~p~e~-q~ig~Vv~~lG~~~~~V~~~-----------dG~~~la~IpGK~Rk~I----wIk~GD~VlVe~~~~~~~Kg~I 91 (145)
.|..| -++|+|+++...+-| |.+. .|...+-.++.....++ .+++||.|.+.....++..+.|
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~-V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAK-VHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEE-EEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEEEEECceEE-EEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 45655 589999998776544 5531 35444444443332222 2899999998887765544443
No 45
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.64 E-value=37 Score=23.75 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=46.7
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeCC-CCEEEEEeccc----ccc-eEEEccCCEEEEEeccCCCC--ceEEEEEcC
Q 032228 29 KEDG-QEYAQVLRMLGNGRCEAMCID-GAKRLCHIRGK----MHK-KVWIGAGDIILVGLRDYQDD--KADVILKYM 96 (145)
Q Consensus 29 p~e~-q~ig~Vv~~lG~~~~~V~~~d-G~~~la~IpGK----~Rk-~IwIk~GD~VlVe~~~~~~~--Kg~Ii~ry~ 96 (145)
|..| .+.|+|+.+...+.| |.+.+ +..=|+|++-= ..+ .-.++.||.|.|.....+.. +++|..-+.
T Consensus 20 ~~vG~iv~G~V~~I~~fGaF-V~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk 95 (119)
T 2cqo_A 20 PALYTIFQGEVAMVTDYGAF-IKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMK 95 (119)
T ss_dssp CCTTCEEEEEEEEEETTEEE-EECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEEST
T ss_pred cCCCCEEEEEEEEEeCceEE-EEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEe
Confidence 4444 589999999988876 67754 35788887632 122 22488999999998877654 478876553
No 46
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.60 E-value=15 Score=31.59 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=43.8
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEecc
Q 032228 30 EDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 30 ~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
+-++++|.|++++..+.+-|....|..+++.+.+.+-.. -+++|+.|.+....
T Consensus 100 ~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~-~l~~g~~v~~~~~~ 152 (437)
T 4b4t_L 100 SIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRS-KLKKGVRVTLDITT 152 (437)
T ss_dssp SCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTT-SCCTTCEEEECSSS
T ss_pred cCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHh-hcCCCceeeEcccc
Confidence 457899999999999999999999999999998887542 35778888776543
No 47
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=55.97 E-value=39 Score=24.37 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=46.5
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 34 EYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 34 ~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
.-|+|..+..++...|.+.+....+ .+...+=-.|-=+.|+.|+|-.-+|-...|.++.+-
T Consensus 35 ~KgvV~~V~~~~~c~V~l~~~g~~v-~v~q~~LETViP~~g~~V~Iv~G~~rG~~g~L~~id 95 (127)
T 2ckk_A 35 KKAIVKEVIDKYTAVVKMIDSGDKL-KLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESIN 95 (127)
T ss_dssp CEEEEEEEETTTEEEEEETTTCCEE-EEEGGGEEECCCCTTCEEEECSSTTTTCEEEEEEEE
T ss_pred ceEEEEEecCCCeEEEEECCCCCEE-EEchHHcEEecCCCCCEEEEEecccCCcEEEEEEEe
Confidence 5688888888899999995444444 777777666666899999998877777778777663
No 48
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=55.97 E-value=8.8 Score=29.14 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=26.1
Q ss_pred ceEEEccCCEEEEEeccCCCCceEEEEEcChh
Q 032228 67 KKVWIGAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 67 k~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~d 98 (145)
+++.|+.||.|.|-.-.+-...|.|+.+|.+.
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk 76 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRRR 76 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETTT
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcCC
Confidence 37999999999998766656789998888654
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.94 E-value=30 Score=29.68 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCC
Q 032228 29 KEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQ 85 (145)
Q Consensus 29 p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~ 85 (145)
.+.++.+|.|+++++.+.+-|....|..+++.+...+... -+++|+.|.+....+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~-~l~~~~~v~l~~~~~~ 121 (405)
T 4b4t_J 66 QEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVK-DLKASQRVCLRSDSYM 121 (405)
T ss_dssp CCCCEEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTT-TCCSSCEEEEETTTCS
T ss_pred cCCCceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHh-hCCCcceeeeecccce
Confidence 3457899999999999999999999999999998777652 3579999988766553
No 50
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=55.86 E-value=11 Score=27.51 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.5
Q ss_pred ceEEEccCCEEEEEeccCCCCceEEEEEcChhH
Q 032228 67 KKVWIGAGDIILVGLRDYQDDKADVILKYMPDE 99 (145)
Q Consensus 67 k~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~de 99 (145)
+++.|+.||.|.|---.+-...|.|+..|...+
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~ 71 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKA 71 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTTT
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEECCCC
Confidence 468899999999987666667899998886543
No 51
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=55.70 E-value=33 Score=23.64 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEeccc--ccceEEEccCCEEEEEeccCCCCceEEEEEcChhHHHHH
Q 032228 34 EYAQVLRMLGNGRCEAMCIDGAKRLCHIRGK--MHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 103 (145)
Q Consensus 34 ~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK--~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~deik~L 103 (145)
+-++|+++.++. -.| -..|.++-+++.== --..=-++.||||||.. |-.+.++.+++++..
T Consensus 5 IP~kVvei~~~~-A~V-d~~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH~-------GfAi~~ideeeA~et 67 (90)
T 2ot2_A 5 VPGQIRTIDGNQ-AKV-DVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHV-------GFAMSVINEAEARDT 67 (90)
T ss_dssp EEEEEEEECSSE-EEE-ECSSSEEEEECTTTCSBCTTSCBCTTCEEEEET-------TEEEEEECHHHHHHH
T ss_pred cceEEEEEcCCc-EEE-EcCCeEEEEEEeeeeccCCCCCCCCCCEEEEec-------ChhhhhCCHHHHHHH
Confidence 458899987763 333 24577777665410 00000156899999985 456788888887654
No 52
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=55.01 E-value=11 Score=27.77 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=26.1
Q ss_pred ceEEEccCCEEEEEeccCCCCceEEEEEcChh
Q 032228 67 KKVWIGAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 67 k~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~d 98 (145)
+++.|+.||.|.|-.-.+-...|.|+.+|.+.
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 77 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLK 77 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGGG
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECCC
Confidence 37999999999998766656789999888654
No 53
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=53.07 E-value=22 Score=28.34 Aligned_cols=76 Identities=8% Similarity=0.129 Sum_probs=48.9
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceE--------EEccCCEEEEEeccCCCC-----------
Q 032228 28 FKEDG-QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKV--------WIGAGDIILVGLRDYQDD----------- 87 (145)
Q Consensus 28 ~p~e~-q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~I--------wIk~GD~VlVe~~~~~~~----------- 87 (145)
.|..| -++|+|+.+... .+.|.+..+..=+.|++.=.-+++ .+++||.|.+.....+..
T Consensus 71 ~p~~GDiV~G~V~~v~~~-ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~~ 149 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIY-GWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKD 149 (251)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCSTT
T ss_pred CCCCCCEEEEEEEEEeCc-eEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcccc
Confidence 46665 489999998765 667888766666666543221233 789999999776654321
Q ss_pred ce----EEEEEcChhHHHHHH
Q 032228 88 KA----DVILKYMPDEARLLK 104 (145)
Q Consensus 88 Kg----~Ii~ry~~deik~Lr 104 (145)
-| =+++..++.-++.|.
T Consensus 150 lG~L~~G~v~~vs~~~v~rl~ 170 (251)
T 2je6_I 150 LGRVSNGIVIDIMPVKVPRVI 170 (251)
T ss_dssp CEECCSSCEEECCGGGHHHHH
T ss_pred CCcccCCEEEEECHHHhHHHh
Confidence 12 246677777777664
No 54
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=52.49 E-value=13 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=26.2
Q ss_pred ceEEEccCCEEEEEeccCCCCceEEEEEcChh
Q 032228 67 KKVWIGAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 67 k~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~d 98 (145)
+++.|+.||.|.|-.-.+-...|.|+.+|.+.
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 76 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKK 76 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcCC
Confidence 37999999999998766656789999888654
No 55
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=52.27 E-value=14 Score=29.83 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=48.7
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC--CCCEEEEEecccc----cc-eEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 28 FKEDG-QEYAQVLRMLGNGRCEAMCI--DGAKRLCHIRGKM----HK-KVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 28 ~p~e~-q~ig~Vv~~lG~~~~~V~~~--dG~~~la~IpGK~----Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
.|..| .+.|+|+.+...+.| |.+. +|..=|+|++--- +. +=.++.||.|.|.....+..+++|..-+
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaF-V~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSl 82 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSY-VSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSL 82 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBE-EEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEES
T ss_pred cCCCCCEEEEEEEEEeccEEE-EEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEE
Confidence 34545 489999999998887 6775 7877777776432 22 2348899999999998877677775443
No 56
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.90 E-value=10 Score=27.60 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=28.6
Q ss_pred EEeccccc-----ceEEEccCCEEEEEeccCCCCceEEEEEcChh
Q 032228 59 CHIRGKMH-----KKVWIGAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 59 a~IpGK~R-----k~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~d 98 (145)
|.|+--+| +++.|+.||.|.|---.+-...|.|+.+|.+.
T Consensus 29 a~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 29 APLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKR 73 (121)
T ss_dssp EEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTT
T ss_pred CcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecC
Confidence 44554444 36999999999998655545678998888654
No 57
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=50.23 E-value=34 Score=25.20 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=40.6
Q ss_pred ccCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecc---ccc----ceE--E------EccCCEEEEEeccCCC
Q 032228 27 IFKEDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCHIRG---KMH----KKV--W------IGAGDIILVGLRDYQD 86 (145)
Q Consensus 27 ~~p~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~IpG---K~R----k~I--w------Ik~GD~VlVe~~~~~~ 86 (145)
..|..|+ +.|+|+.+..-+.| |++.. ..-|.|++- .++ ..+ | ++.||.|.|.....+.
T Consensus 79 ~~~~~Gev~~G~V~~v~~fG~F-V~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 152 (171)
T 1y14_B 79 FKPFKGEVVDGTVVSCSQHGFE-VQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCIS 152 (171)
T ss_dssp ECCCTTCEEEEEEEEEETTEEE-EEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEecCEEE-EEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEc
Confidence 4466665 78999999988888 77766 888888873 222 232 2 8889999888776543
No 58
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.19 E-value=27 Score=30.37 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=43.7
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEecc
Q 032228 30 EDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 30 ~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
....++|.|++++..+++-|..+.|..+++.+.+.+-+. -+++|+.|.+....
T Consensus 101 ~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~-~l~~~~~v~l~~~~ 153 (437)
T 4b4t_I 101 GNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKE-LLEPGCSVLLHHKT 153 (437)
T ss_dssp CSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGG-GCCTTCEEEECTTT
T ss_pred CCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHh-HccCCcEEEEeccC
Confidence 346789999999999999999999999999998877652 35788888876543
No 59
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=45.02 E-value=16 Score=25.69 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=37.9
Q ss_pred EEEEeCCCceEEEEe-CCC-CEEEEEecccccceEEEccCCEEEEEec
Q 032228 37 QVLRMLGNGRCEAMC-IDG-AKRLCHIRGKMHKKVWIGAGDIILVGLR 82 (145)
Q Consensus 37 ~Vv~~lG~~~~~V~~-~dG-~~~la~IpGK~Rk~IwIk~GD~VlVe~~ 82 (145)
+|....++..|+-.+ +.| -..+-.|...+|+.+=+..||.|.|.+.
T Consensus 55 ~V~~tI~g~~~~tsL~p~g~G~~~Lpvk~~vRka~g~~~GD~V~V~L~ 102 (104)
T 2d9r_A 55 RVNATFDGYPYTGYIVRMGLPCHILGLRQDIRRAIGKQPGDSVYVTLL 102 (104)
T ss_dssp EEEEEETTEEEEEEEEESSTTCEEEEECHHHHHHHTCCTTSEEEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCCcEEEEecHHHHHHcCCCCCCEEEEEEE
Confidence 777778888888776 455 4788889999999999999999999875
No 60
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=44.75 E-value=39 Score=24.95 Aligned_cols=45 Identities=9% Similarity=-0.094 Sum_probs=32.6
Q ss_pred EEEEEEEeC-CCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEec
Q 032228 34 EYAQVLRML-GNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLR 82 (145)
Q Consensus 34 ~ig~Vv~~l-G~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~ 82 (145)
++|+|+++- .++.+.+.|.||.++.+.++.-+ +--.+.+|-|-=.
T Consensus 48 iVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL----~~~~~~~VEViG~ 93 (142)
T 2pi2_E 48 FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPL----DEEISGIVEVVGR 93 (142)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSSCC----SSCCCSEEEEEEE
T ss_pred EEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCC----CccCCCEEEEEEE
Confidence 789999873 46888999999999999987532 2223556665544
No 61
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=44.25 E-value=42 Score=26.18 Aligned_cols=60 Identities=12% Similarity=-0.045 Sum_probs=42.8
Q ss_pred ccCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecc---ccc----ceEE--------EccCCEEEEEeccCCCCc
Q 032228 27 IFKEDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCHIRG---KMH----KKVW--------IGAGDIILVGLRDYQDDK 88 (145)
Q Consensus 27 ~~p~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~IpG---K~R----k~Iw--------Ik~GD~VlVe~~~~~~~K 88 (145)
..|..|+ +.|+|+.+..-+.| |++.. ..-|.|++- .++ .++| ++.||.|.|.....+..+
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~F-Velg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~ 154 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFE-VQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQV 154 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEE-EECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEET
T ss_pred eccCCCCEEEEEEEEEecceEE-EEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCC
Confidence 4466676 68999999988888 77765 888888872 222 1322 889999999887665433
No 62
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.23 E-value=14 Score=27.71 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred eEEEccCCEEEEEeccCCCCc-eEEEEEcChh
Q 032228 68 KVWIGAGDIILVGLRDYQDDK-ADVILKYMPD 98 (145)
Q Consensus 68 ~IwIk~GD~VlVe~~~~~~~K-g~Ii~ry~~d 98 (145)
.+.|+.||.|.|---.+-... |.|+.+|...
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETTT
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECCC
Confidence 567889999888776655567 8888877554
No 63
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.67 E-value=33 Score=27.96 Aligned_cols=60 Identities=12% Similarity=0.229 Sum_probs=41.8
Q ss_pred CCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccc-----cc--eEEEccCCEEEEEeccCCCCceEE
Q 032228 29 KEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKM-----HK--KVWIGAGDIILVGLRDYQDDKADV 91 (145)
Q Consensus 29 p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~-----Rk--~IwIk~GD~VlVe~~~~~~~Kg~I 91 (145)
...-..||+|+++...+...|. ..|..+++.++..+ +- +|.+. -.+++|+.-+++ ..|+|
T Consensus 95 ~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E-~~Gev 161 (251)
T 3m9b_A 95 GQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFE-AVGEI 161 (251)
T ss_dssp HSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCC-CCSEE
T ss_pred cCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCC-CcccE
Confidence 4457899999999999999998 57788888887744 32 55554 355566666554 34554
No 64
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=43.48 E-value=31 Score=23.47 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=21.8
Q ss_pred CCeEEEEEEEeCCCc---eEEEEeCCCCEEEEEe
Q 032228 31 DGQEYAQVLRMLGNG---RCEAMCIDGAKRLCHI 61 (145)
Q Consensus 31 e~q~ig~Vv~~lG~~---~~~V~~~dG~~~la~I 61 (145)
.|.+.|+|+....++ ...+.+..|....+.|
T Consensus 9 ~N~l~g~V~~~~~~~~~~~v~l~~~~~~~l~~~i 42 (145)
T 1h9m_A 9 RNVFKGTVSALKEGAVNAEVDILLGGGDKLAAVV 42 (145)
T ss_dssp SEEEEEEEEEEEECSSEEEEEEEESSSCEEEEEE
T ss_pred ceEEEEEEEEEEcCCceEEEEEEECCCCEEEEEe
Confidence 467889998865543 6677777777777764
No 65
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=42.91 E-value=31 Score=28.28 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=48.2
Q ss_pred ccCCCC-eEEEEEEEeCCCceEEEEeCC---CCEEEEEecccccc-eEEEccCCEEEEEeccCCC------C------c-
Q 032228 27 IFKEDG-QEYAQVLRMLGNGRCEAMCID---GAKRLCHIRGKMHK-KVWIGAGDIILVGLRDYQD------D------K- 88 (145)
Q Consensus 27 ~~p~e~-q~ig~Vv~~lG~~~~~V~~~d---G~~~la~IpGK~Rk-~IwIk~GD~VlVe~~~~~~------~------K- 88 (145)
..|..| -++|+|+.+. ...|.|.... +.-.+-.++|--++ +=.+++||+|......... . |
T Consensus 123 YiP~vGDiVIG~Vt~v~-~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc~~~~~k~ 201 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKS-GDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRA 201 (289)
T ss_dssp CCCCSSEEEEEEEEEEE-TTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSCCEEECSBTTTTB
T ss_pred CCCCCCCEEEEEEEEEe-CcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcCCCCceEEEeccccccc
Confidence 357765 4899999975 4668888753 22222234443333 5568999999966654321 1 1
Q ss_pred ---eEE-----EEEcChhHHHHHHH
Q 032228 89 ---ADV-----ILKYMPDEARLLKA 105 (145)
Q Consensus 89 ---g~I-----i~ry~~deik~Lrk 105 (145)
|.| ++..+..-++.|..
T Consensus 202 ~~lG~L~~~G~l~~Vs~~lvrrl~~ 226 (289)
T 2nn6_G 202 NGMGVIGQDGLLFKVTLGLIRKLLA 226 (289)
T ss_dssp CCCCSCCSSCEEECCCHHHHHHHHC
T ss_pred ccCCEecCCeEEEEEChHHhhhhhc
Confidence 334 67777777777764
No 66
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=42.55 E-value=83 Score=28.19 Aligned_cols=88 Identities=13% Similarity=-0.057 Sum_probs=50.6
Q ss_pred eeccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceE--EEccCCEEEEEeccCCC----C-ceEEEEEcC-
Q 032228 25 ELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKV--WIGAGDIILVGLRDYQD----D-KADVILKYM- 96 (145)
Q Consensus 25 el~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~I--wIk~GD~VlVe~~~~~~----~-Kg~Ii~ry~- 96 (145)
.+......+++|++... + +.+.|.-.|-.... .||-+-.... -.+.||+|+|++..|.. - .|.|+.++-
T Consensus 77 ~iler~~~~~vg~~~~~-~-~~~~v~pdd~~~~~-~i~~~~~~~~~~~~~~g~~v~v~i~~~p~~~~~p~~g~i~~~LG~ 153 (644)
T 2id0_A 77 ELVEPFLTRFVGKVQGK-N-DRLAIVPDHPLLKD-AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITF 153 (644)
T ss_dssp EEEECSCSEEEEEEEEE-T-TEEEEEESSTTCCS-CEECCBCSSCCCCCCSSCEEEEEEEECGGGTCSSCEEEEEEEEEC
T ss_pred EEEecCCCEEEEEEEEe-C-CEEEEEECCCCccc-cccccccccccccCCCCCEEEEEEecCcCCCCCCceEEEEEEeCC
Confidence 34445556677776653 2 22233333322111 4544433322 33789999998876642 3 799999993
Q ss_pred ----hhHHHHHHHcCCCCccccc
Q 032228 97 ----PDEARLLKAYGELPETTRL 115 (145)
Q Consensus 97 ----~deik~Lrk~g~wP~~f~~ 115 (145)
..++..+..+.-+|.+|..
T Consensus 154 ~~d~~~e~~~~l~~~~l~~~fp~ 176 (644)
T 2id0_A 154 GDDHFVPWWVTLARHNLEKEAPD 176 (644)
T ss_dssp TTCTTHHHHHHHHHTTCCCSCCC
T ss_pred CCCccchHHHHHHHcCCCCCCCh
Confidence 3456666666668888865
No 67
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=40.96 E-value=1.1e+02 Score=22.58 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=47.0
Q ss_pred ccCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccc----c-----------c-eEEEccCCEEEEEeccCCCC--
Q 032228 27 IFKEDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKM----H-----------K-KVWIGAGDIILVGLRDYQDD-- 87 (145)
Q Consensus 27 ~~p~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~----R-----------k-~IwIk~GD~VlVe~~~~~~~-- 87 (145)
..|..|+ +.|+|+++...+.| |.+. +..-|+|++--. . + .-.++.||.|.|.....+..
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~f-V~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSF-VRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEE-EECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EccCCCCEEEEEEEEEeCcEEE-EEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 3466665 78999999888765 6774 378888876432 1 2 45689999999988766543
Q ss_pred ---ceEEEEEcCh
Q 032228 88 ---KADVILKYMP 97 (145)
Q Consensus 88 ---Kg~Ii~ry~~ 97 (145)
.++|..-...
T Consensus 155 ~p~~~~I~lS~k~ 167 (187)
T 1go3_E 155 RKRGSKIALTMRQ 167 (187)
T ss_dssp ----CEEEEECCS
T ss_pred CCCccEEEEEEcC
Confidence 4577655443
No 68
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=40.29 E-value=33 Score=23.26 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeCCCCEEEEEeccc-cc------------ceEEEccCCEEEEEe
Q 032228 29 KEDG-QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGK-MH------------KKVWIGAGDIILVGL 81 (145)
Q Consensus 29 p~e~-q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK-~R------------k~IwIk~GD~VlVe~ 81 (145)
|..+ -..|.|+++-+ +..+|.+.+|.+.. |+.. |+ -+--+++||+|.|..
T Consensus 31 ~~~~~~~~AvV~~v~~-~~~~v~~~~g~~~~--l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 31 GNSDDILAAVVLSATP-GAVEAFRKNGETIR--ITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp CTTTTCEEEEEEEEET-TEEEEEETTSCEEE--ECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEEE
T ss_pred CccCCeEEEEEEEeCC-CeEEEEEcCCCeEE--EcHHHChhhhhcccccccchhccCCCCCEEEEEE
Confidence 3334 46688887654 56899999987765 5542 22 112377888888874
No 69
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=38.13 E-value=75 Score=25.69 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=51.1
Q ss_pred CCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEeccCCCCceEEEEEc
Q 032228 29 KEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 29 p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry 95 (145)
+....+.|+|.++...+.|-..+.+|..=|+|++--++ .++.||.|-|-....+...++|.--+
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~---~l~~Gd~v~~~V~~id~~d~kI~LSl 214 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA---EPRLGQVLDARVIGFREVDRTLNLSL 214 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS---CCCTTCEEEEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc---cCCCCCEEEEEEEEEECCCCeEEEEe
Confidence 34567999999998888773288899999999887765 38999999999988877778885554
No 70
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=37.93 E-value=14 Score=26.52 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=25.3
Q ss_pred ceEEEccCCEEEEEeccCCCCceEEEEEcChhH
Q 032228 67 KKVWIGAGDIILVGLRDYQDDKADVILKYMPDE 99 (145)
Q Consensus 67 k~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~de 99 (145)
+++.|+.||.|.|---.+-...|.|+..+.+.+
T Consensus 12 rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ 44 (115)
T 2zjr_R 12 DKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQ 44 (115)
T ss_dssp SCCSSCTTSEEECCSSSSTTCEEEEEEEETTTT
T ss_pred eeCcccCCCEEEEeEcCCCCcEEEEEEEECCCC
Confidence 456899999999976665567899988885543
No 71
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=36.16 E-value=85 Score=24.45 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=50.0
Q ss_pred cCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccc----cc--eEEEccCCEEEEEeccCCCC-----------ce
Q 032228 28 FKEDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKM----HK--KVWIGAGDIILVGLRDYQDD-----------KA 89 (145)
Q Consensus 28 ~p~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~----Rk--~IwIk~GD~VlVe~~~~~~~-----------Kg 89 (145)
.|..|+ ++|+|+.+... .+.|.+.....=+.+++.=. .+ +=.+++||.|.+.....++. -|
T Consensus 54 ~p~~GDiV~G~V~~v~~~-~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~lG 132 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAAN-GWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICR 132 (229)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCE
T ss_pred cCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEccccCC
Confidence 466664 89999998766 67788876666666654322 11 33589999999777654321 12
Q ss_pred E----EEEEcChhHHHHHH
Q 032228 90 D----VILKYMPDEARLLK 104 (145)
Q Consensus 90 ~----Ii~ry~~deik~Lr 104 (145)
. +++..++.-++.|.
T Consensus 133 ~L~~G~v~~vs~~~v~rl~ 151 (229)
T 2ba0_A 133 PIRFGRIVAINPARVPRVI 151 (229)
T ss_dssp EESSSEEEECCGGGHHHHH
T ss_pred cccCCEEEEECHHHhHHHh
Confidence 2 46677777777765
No 72
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=35.04 E-value=97 Score=20.43 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=29.9
Q ss_pred eEEEEEEEeCC-----CceE--EEEeC--CCCEEEEEecccccceEEEccCCEEEEEecc
Q 032228 33 QEYAQVLRMLG-----NGRC--EAMCI--DGAKRLCHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 33 q~ig~Vv~~lG-----~~~~--~V~~~--dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
-..|+|++++| +... +|++. .|..++..+.|- |+.||++.+.-++
T Consensus 7 ~~~A~VikVlGRtGs~G~~tQVrv~~l~d~~r~i~RnVkGP------VR~GDIl~L~EtE 60 (67)
T 3u5c_c 7 VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGP------VRENDILVLMESE 60 (67)
T ss_dssp CEEEEEEEEEEEESSSCCEEEEEEEESSSCSCEEEEECSSC------CCTTCEEEESSSS
T ss_pred cEEEEEEEEecCCcCcccEEEEEEEEecCCCcEEEecccCC------cccCCEEEEehhh
Confidence 36899999997 3344 44442 466776666665 5689988876554
No 73
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=34.85 E-value=71 Score=25.81 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCeEEEEEEEeC-CCceEEEEeCC-CCEEEEEecc-cccceEEEccCCEEEEEeccCCCCceEEEEEcCh
Q 032228 31 DGQEYAQVLRML-GNGRCEAMCID-GAKRLCHIRG-KMHKKVWIGAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 31 e~q~ig~Vv~~l-G~~~~~V~~~d-G~~~la~IpG-K~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~ 97 (145)
..-+.++|+.+. ..+.| |...- |...++|++- ...+..|.+.||.|.|.+ ..+. +++|+--+-.
T Consensus 70 G~~~~g~V~~v~~~~GaF-VdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l-~iD~-~~Ri~ls~k~ 136 (285)
T 3go5_A 70 DQFGWGRVTEVRKDLGVF-VDTGLPDKEIVVSLDILPELKELWPKKGDQLYIRL-EVDK-KDRIWGLLAY 136 (285)
T ss_dssp SSCEEEEEEEEETTTEEE-EECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEE-EECT-TSCEEEEECC
T ss_pred CCEEEEEEEEEccCceEE-EEECCCCcEEEEEHHHCCcccccccCCCCEEEEEE-EECC-CCcEEEEehh
Confidence 345889999997 45555 34443 5678888774 233467999999999886 4555 7899877643
No 74
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=34.55 E-value=48 Score=25.07 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=47.9
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeCC-CCEEEEE---ecccccc-eEEEccCCEEEEEeccCCC-------------Cc-
Q 032228 29 KEDG-QEYAQVLRMLGNGRCEAMCID-GAKRLCH---IRGKMHK-KVWIGAGDIILVGLRDYQD-------------DK- 88 (145)
Q Consensus 29 p~e~-q~ig~Vv~~lG~~~~~V~~~d-G~~~la~---IpGK~Rk-~IwIk~GD~VlVe~~~~~~-------------~K- 88 (145)
|..| -++|+|+.+.+ ..|.|.... -..-+-+ ++|.-++ +=.++.||+|......... .|
T Consensus 5 P~~gDvViG~V~~v~~-~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~~~~~r~ 83 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFS-DSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRD 83 (175)
T ss_dssp CCTTCEEEEEEEEECS-SEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCTTTCSC
T ss_pred CCCcCEEEEEEEEEEC-cEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecCCCceEEEecccccccc
Confidence 5554 58999999865 567888764 2322323 2333333 5669999999865543221 11
Q ss_pred ---eE----EEEEcChhHHHHHHHc
Q 032228 89 ---AD----VILKYMPDEARLLKAY 106 (145)
Q Consensus 89 ---g~----Ii~ry~~deik~Lrk~ 106 (145)
|. .+...++.-++.|..+
T Consensus 84 ~~lG~L~~G~l~~v~~~~v~rl~~~ 108 (175)
T 2ja9_A 84 AGFGILEDGMIIDVNLNFARQLLFN 108 (175)
T ss_dssp TTCEEECSCEEEECCHHHHHHHHHC
T ss_pred cCCcCcCCCEEEEEcHHHhhHHhcC
Confidence 33 3677888888888764
No 75
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=33.78 E-value=78 Score=29.02 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=42.6
Q ss_pred CeEEEEEEEeCCCceEEEEeCC-CCEEEEEeccc-----c------------cc-----eEEEccCCEEEEEeccCCCC-
Q 032228 32 GQEYAQVLRMLGNGRCEAMCID-GAKRLCHIRGK-----M------------HK-----KVWIGAGDIILVGLRDYQDD- 87 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~d-G~~~la~IpGK-----~------------Rk-----~IwIk~GD~VlVe~~~~~~~- 87 (145)
....|+|+.+..++.| |.+++ |..-++|++.- . ++ ...++.||.|.|.....+..
T Consensus 671 ~~~~g~V~~V~~~G~f-V~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~ 749 (760)
T 2vnu_D 671 STETGYVIKVFNNGIV-VLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 749 (760)
T ss_dssp SEEEEEEEEEETTEEE-EEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC------
T ss_pred eEEEEEEEEEECCeEE-EEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECcc
Confidence 4789999999887766 77776 99999998632 1 12 36789999999999877655
Q ss_pred --ceEEEE
Q 032228 88 --KADVIL 93 (145)
Q Consensus 88 --Kg~Ii~ 93 (145)
+++|-.
T Consensus 750 ~~~~kI~l 757 (760)
T 2vnu_D 750 TSKRKAEL 757 (760)
T ss_dssp --CCEEEC
T ss_pred ccCCcEEE
Confidence 577743
No 76
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=33.54 E-value=9.1 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.5
Q ss_pred EEecccccceEEEccCCEEEEEecc
Q 032228 59 CHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 59 a~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
..||..+|+.+=|++||.|.+...+
T Consensus 14 i~IPk~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 14 VTIPAKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp BCCCHHHHHHSCCCTTCEEEEEECS
T ss_pred EEeCHHHHHHcCcCCCCEEEEEEEC
Confidence 3588999999999999999998754
No 77
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=33.04 E-value=9.3 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.8
Q ss_pred EEecccccceEEEccCCEEEEEecc
Q 032228 59 CHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 59 a~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
..||..+|+.+-|++||.|.+...+
T Consensus 24 ItIPkeiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 24 VVIPIELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp EECCHHHHHHTTCCTTCEEEEEEET
T ss_pred EEeCHHHHHHcCCCCCCEEEEEEEC
Confidence 4589999999999999999998753
No 78
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=32.77 E-value=35 Score=26.09 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred eEEEccCCEEEEEeccCC-CCceEEEEEcC
Q 032228 68 KVWIGAGDIILVGLRDYQ-DDKADVILKYM 96 (145)
Q Consensus 68 ~IwIk~GD~VlVe~~~~~-~~Kg~Ii~ry~ 96 (145)
.+-|+.||+|||+..+-+ +-=|+|.+-|.
T Consensus 36 ~~~i~vGd~VLI~~~D~~~PyVAki~~lye 65 (163)
T 4dov_A 36 EIHIKVGQFVLIQGEDNKKPYVAKLIELFQ 65 (163)
T ss_dssp EEEEETTCEEEECCSSSSCCEEEEEEEEEE
T ss_pred CeEEeeCCEEEEeCCcccCChhHHHHHHHh
Confidence 678999999999887643 33566666654
No 79
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=32.48 E-value=1.1e+02 Score=23.25 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=32.2
Q ss_pred CCCeEEEEEEEeC---CCceEEEEeCCC----CEEEEEecccccceEEEccCCEEEEE
Q 032228 30 EDGQEYAQVLRML---GNGRCEAMCIDG----AKRLCHIRGKMHKKVWIGAGDIILVG 80 (145)
Q Consensus 30 ~e~q~ig~Vv~~l---G~~~~~V~~~dG----~~~la~IpGK~Rk~IwIk~GD~VlVe 80 (145)
.+++.+|+|+.++ .|..+.|..++| .++|.-.-..|=..|=+..| ++.|.
T Consensus 126 ~~g~~lG~V~~v~~~ganDvlvV~~~~g~~~~ke~LIPfv~~~V~~VDle~~-~I~V~ 182 (187)
T 2f1l_A 126 QGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAG-EMRVD 182 (187)
T ss_dssp TTSCEEEEEEEEECCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEETTTT-EEEEC
T ss_pred CCCCEEEEEEEEccCCCcEEEEEEeCCCCCCCcEEEEechHHhcCEEeCCCC-EEEEe
Confidence 3577899999876 378888888887 66665554444344444333 44444
No 80
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.29 E-value=75 Score=27.12 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=41.9
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEe
Q 032228 30 EDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGL 81 (145)
Q Consensus 30 ~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~ 81 (145)
.....+|.|++++..+.+-|....|..+++.+.+.+-+.. +++|+.|.+..
T Consensus 91 ~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~-~~~~~~v~~~~ 141 (428)
T 4b4t_K 91 SVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDREL-LKPSMSVALHR 141 (428)
T ss_dssp CSCEEEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTT-CCTTCEEEECS
T ss_pred CCCceeeEEEEEccCCeeEEecCCCCEEEEeccccccHhh-CCCCceeeeec
Confidence 3567899999999999999999999999999999886522 56777776653
No 81
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=31.88 E-value=64 Score=25.14 Aligned_cols=57 Identities=7% Similarity=0.010 Sum_probs=37.9
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc---------eEEEccCCEEEEEeccCC
Q 032228 28 FKEDG-QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHK---------KVWIGAGDIILVGLRDYQ 85 (145)
Q Consensus 28 ~p~e~-q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk---------~IwIk~GD~VlVe~~~~~ 85 (145)
.|..| -++|+|+.+... .+.|.+..+..=+.|++.=.-+ +=.+++||.|.+.....+
T Consensus 63 ~p~~GDiV~G~V~~v~~~-~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~ 129 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIM-NWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFD 129 (235)
T ss_dssp CCCTTCCEEEEEEEECSS-EEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEEC
T ss_pred CCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEEC
Confidence 56665 489999998765 6678887666555554322111 116899999998776554
No 82
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=31.19 E-value=28 Score=23.69 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=5.2
Q ss_pred EccCCEEEEE
Q 032228 71 IGAGDIILVG 80 (145)
Q Consensus 71 Ik~GD~VlVe 80 (145)
+..||+|++.
T Consensus 47 ~~~Gdivv~~ 56 (109)
T 1kca_A 47 VEPGDFCIAR 56 (109)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 4555555554
No 83
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=30.66 E-value=23 Score=24.79 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=10.7
Q ss_pred EEccCCEEEEEeccCCCCceEEE
Q 032228 70 WIGAGDIILVGLRDYQDDKADVI 92 (145)
Q Consensus 70 wIk~GD~VlVe~~~~~~~Kg~Ii 92 (145)
-|..||+|+|++.. ....|+|+
T Consensus 63 ~i~~Gd~v~vd~~~-~~~~Gdiv 84 (133)
T 2hnf_A 63 SFPDGMLILVDPEQ-AVEPGDFC 84 (133)
T ss_dssp CCCTTCEEEEETTS-CCCTTSEE
T ss_pred ccCCCCEEEEccCC-CCCCCCEE
Confidence 45556666655542 23344443
No 84
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=29.97 E-value=44 Score=25.40 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=37.1
Q ss_pred CCCeEEEEEEEeCC-Cc--eEEEEeCCCCEEEEEecccccceEEEccCCEEEEEec
Q 032228 30 EDGQEYAQVLRMLG-NG--RCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLR 82 (145)
Q Consensus 30 ~e~q~ig~Vv~~lG-~~--~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~ 82 (145)
..|+..|+|+.+.- +. ...+.+.+|....|.|+..- ..-+.+|+.|.+...
T Consensus 202 ~rN~l~g~V~~i~~~~~~~~v~l~l~~~~~l~a~it~~s--~l~L~~G~~v~a~ik 255 (265)
T 1b9m_A 202 ADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNE--ATSLQQGQNVTAYFN 255 (265)
T ss_dssp SSEEEEEEEEEEEECSSEEEEEEECTTSCEEEEEEEHHH--HTTCCTTCEEEEEEC
T ss_pred CCcEEEEEEEEEEECCceEEEEEEeCCCCEEEEEECChh--hcCCCCCCEEEEEEc
Confidence 35789999988743 33 34555668899999998665 667888888877654
No 85
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=28.44 E-value=1e+02 Score=22.87 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=36.1
Q ss_pred ccCCCCeEEEEEEEeCCCceEEEEeCC----------CCEEEEEecc----cccc-eEEEccCCEEEEEecc
Q 032228 27 IFKEDGQEYAQVLRMLGNGRCEAMCID----------GAKRLCHIRG----KMHK-KVWIGAGDIILVGLRD 83 (145)
Q Consensus 27 ~~p~e~q~ig~Vv~~lG~~~~~V~~~d----------G~~~la~IpG----K~Rk-~IwIk~GD~VlVe~~~ 83 (145)
..|+.+-++|+|+++... .+.|.+.. +..=+.|++- +..+ +=.++.||.|.+....
T Consensus 54 y~p~GdiV~G~V~~V~~~-ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 54 EIVKGDVVLGRVVDLRNS-IALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeCC-cEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 456633589999998754 44566544 5666666653 1111 3458999999998775
No 86
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=28.37 E-value=1.6e+02 Score=21.01 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=36.7
Q ss_pred CCCEEEEEeccccc-----ceEEEccCCEEEEEeccC------CCCceEEEEEc----------ChhHHHHHHHcCCC
Q 032228 53 DGAKRLCHIRGKMH-----KKVWIGAGDIILVGLRDY------QDDKADVILKY----------MPDEARLLKAYGEL 109 (145)
Q Consensus 53 dG~~~la~IpGK~R-----k~IwIk~GD~VlVe~~~~------~~~Kg~Ii~ry----------~~deik~Lrk~g~w 109 (145)
...+.+.-+.|++. +..-+.+||.|.+.+... +.....+++.+ +++++..|++...+
T Consensus 63 ~~~E~~~Vl~G~~~v~v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~~d~p~~~~~~~l~~L~~~~~~ 140 (156)
T 3kgz_A 63 AHVHAVMIHRGHGQCLVGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAARDRPQLPTADDLAELRKDERI 140 (156)
T ss_dssp SSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESSCCCCBCCCHHHHHHHHTSHHH
T ss_pred CCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCCCCcccCCCHHHHHHHHhCcch
Confidence 34566667777775 267789999999876522 12344444443 56788888876544
No 87
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=27.69 E-value=1.6e+02 Score=27.98 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=44.9
Q ss_pred CeEEEEEEEeCCCceEEEEeCC-CCEEEEEecccc-----------------cc-----eEEEccCCEEEEEeccCCCC-
Q 032228 32 GQEYAQVLRMLGNGRCEAMCID-GAKRLCHIRGKM-----------------HK-----KVWIGAGDIILVGLRDYQDD- 87 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~d-G~~~la~IpGK~-----------------Rk-----~IwIk~GD~VlVe~~~~~~~- 87 (145)
....|+|+.+..++.| |.+++ |..-++|++.-- ++ ...++.||.|.|.....+..
T Consensus 888 e~~~g~V~~V~~~G~f-V~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 888 STETGYVIKVFNNGIV-VLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp CEEEEEEEEECSSEEE-EECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred eEEEEEEEEEcCCeEE-EEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 4688999999887765 88887 999999987521 11 36789999999999876542
Q ss_pred --ceEEE
Q 032228 88 --KADVI 92 (145)
Q Consensus 88 --Kg~Ii 92 (145)
+++|-
T Consensus 967 ~~~~kI~ 973 (977)
T 2wp8_J 967 TSKRKAE 973 (977)
T ss_dssp SCCCCCC
T ss_pred cCCCceE
Confidence 35553
No 88
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=27.56 E-value=44 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=20.7
Q ss_pred EEccCCEEEEEeccCCCCceEEEEEcCh
Q 032228 70 WIGAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 70 wIk~GD~VlVe~~~~~~~Kg~Ii~ry~~ 97 (145)
.|+.||.|.|---.+--..|.|+..|..
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC
Confidence 4788999988755544567888888865
No 89
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=26.76 E-value=1.3e+02 Score=22.52 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=29.8
Q ss_pred CCeEEEEEEEeC--C-CceEEEEe---CCC-CEEEEEecc-cccceEEEccCCEEEEE
Q 032228 31 DGQEYAQVLRML--G-NGRCEAMC---IDG-AKRLCHIRG-KMHKKVWIGAGDIILVG 80 (145)
Q Consensus 31 e~q~ig~Vv~~l--G-~~~~~V~~---~dG-~~~la~IpG-K~Rk~IwIk~GD~VlVe 80 (145)
+++.+|+|+.++ | |..+.|.. ++| .++|.-. - .|=..|=+..| ++.|.
T Consensus 122 ~g~~lG~V~~v~~~gandvl~V~~~~~~~g~ke~LIPf-~~~~V~~VDl~~~-~I~v~ 177 (182)
T 2qgg_A 122 QEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPW-HKDVVQRVDLEAG-RIYVN 177 (182)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEECCSSSSSSCCEEEEC-CTTTEEEEETTTT-EEEES
T ss_pred CCcEEEEEEEEccCCCcEEEEEEeccCCCCCeEEEeec-ChhhEeEEECCCC-EEEEe
Confidence 578899999876 4 67788877 666 6666554 3 34334444333 44444
No 90
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=26.15 E-value=32 Score=23.30 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=19.4
Q ss_pred EEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEe
Q 032228 38 VLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGL 81 (145)
Q Consensus 38 Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~ 81 (145)
++.+.|++..-..+.+|..+++.-.. .++.||+|++..
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~~------~~~~gdivv~~~ 66 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSAI------TASHGDIVIAAV 66 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETTS------CCCTTCEEEEEE
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcCC------CCCCCCEEEEEE
Confidence 44455555443344566666554221 256666666654
No 91
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=25.76 E-value=61 Score=25.10 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=29.9
Q ss_pred cccccc-eEEEccCCEEEEEeccCCCCceEEEEEcChhHHHHHHHcCCCCcccccc
Q 032228 62 RGKMHK-KVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLN 116 (145)
Q Consensus 62 pGK~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~deik~Lrk~g~wP~~f~~~ 116 (145)
|.|+.+ .|+|. .|+++|..- + +.++.|+.-|+..|.=|.+|...
T Consensus 142 ptki~~G~I~i~-~d~~v~k~G-------~---~v~~~~A~lL~~l~i~p~~~~l~ 186 (213)
T 3jsy_A 142 PAAIEKGKIAIK-EDKVVVKKG-------E---VVSPKLAAVLDRLGIKPIKVGLN 186 (213)
T ss_dssp CEEEETTEEEEC-SCEEEECTT-------S---BCCHHHHHHHHHTTCCCEEESCE
T ss_pred ceEeecCeEEEc-cceEEEecC-------C---CcCHHHHHHHHHcCCCcEEEEEE
Confidence 333444 55553 355555432 2 46899999999999999999763
No 92
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=25.28 E-value=1.5e+02 Score=19.40 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=46.2
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEeccccc-----ceEEEccCCEEEEEeccC----CCC-ceEEEEEcChhHHHH
Q 032228 33 QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMH-----KKVWIGAGDIILVGLRDY----QDD-KADVILKYMPDEARL 102 (145)
Q Consensus 33 q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~R-----k~IwIk~GD~VlVe~~~~----~~~-Kg~Ii~ry~~deik~ 102 (145)
.+....+.+..+..+....-.+.+.+.-+.|++. ...-+.+||.+.+.+... ... .+.++..+.+..-.+
T Consensus 40 ~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~~p~~~d~ 119 (126)
T 4e2g_A 40 NLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEETRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIFSPPREDY 119 (126)
T ss_dssp SCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEEEEECTTEEEEECTTCCEEEECCTTCEEEEEEEESCCHHH
T ss_pred CeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEEEEeCCCCEEEECCCCcEEeEECCCCEEEEEEECCCCcch
Confidence 3444555555566665555566788888999997 478899999998876521 112 477777776544444
Q ss_pred H
Q 032228 103 L 103 (145)
Q Consensus 103 L 103 (145)
|
T Consensus 120 ~ 120 (126)
T 4e2g_A 120 A 120 (126)
T ss_dssp H
T ss_pred h
Confidence 3
No 93
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.72 E-value=85 Score=20.56 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCe-EEEEEEEeCCCceEEEEeCCCCE
Q 032228 31 DGQ-EYAQVLRMLGNGRCEAMCIDGAK 56 (145)
Q Consensus 31 e~q-~ig~Vv~~lG~~~~~V~~~dG~~ 56 (145)
+|+ --|+|+++.+++.|.|...|+.+
T Consensus 22 Dg~~Y~A~I~~v~~~~~~~V~f~Dyn~ 48 (74)
T 2equ_A 22 DCRYYPAKIEAINKEGTFTVQFYDGVI 48 (74)
T ss_dssp SSSEEEEEEEEESTTSSEEEEETTSCE
T ss_pred CCCEEEEEEEEECCCCEEEEEEecCCe
Confidence 454 67999999988899999999843
No 94
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=24.58 E-value=22 Score=23.16 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=25.6
Q ss_pred CCCEEEEEecccccceEEEccCCEEEEEec
Q 032228 53 DGAKRLCHIRGKMHKKVWIGAGDIILVGLR 82 (145)
Q Consensus 53 dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~ 82 (145)
.|...-.+||..+++.+=|.+||.|.|...
T Consensus 9 ~Gns~~v~iPk~~~~~lgl~~gd~v~i~~~ 38 (82)
T 1mvf_D 9 WGNSPAVRIPATLMQALNLNIDDEVKIDLV 38 (82)
T ss_dssp ETTEEEEECCHHHHHHTTCCTTCBEEEEEE
T ss_pred ECCccEEEECHHHHHHcCCCCCCEEEEEEE
Confidence 355678899999999999999999999874
No 95
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=24.54 E-value=1.5e+02 Score=21.11 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecc--------cc----cc--eEEEccCCEEEEEecc--CCCCceEE---E
Q 032228 32 GQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRG--------KM----HK--KVWIGAGDIILVGLRD--YQDDKADV---I 92 (145)
Q Consensus 32 ~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpG--------K~----Rk--~IwIk~GD~VlVe~~~--~~~~Kg~I---i 92 (145)
....|+|+.+.-+..+.|.+ +|+....+|.| .+ +. +-.+..|..|.|+... ..+.-|++ |
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~-~g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~v 86 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY-KGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAYI 86 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE-TTEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEEE
T ss_pred ceeeEEEEEEECCCEEEEEe-CCcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEEE
Confidence 45679999999999999987 67655555533 11 11 1223347777777532 11233554 2
Q ss_pred EEcChhHHHHHHHcCC
Q 032228 93 LKYMPDEARLLKAYGE 108 (145)
Q Consensus 93 ~ry~~deik~Lrk~g~ 108 (145)
|.=..+=-.+|.++|+
T Consensus 87 ~~~g~~vn~~lv~~Gl 102 (143)
T 4eqp_A 87 YADGKMVNEALVRQGL 102 (143)
T ss_dssp EETTEEHHHHHHHTTS
T ss_pred EECCchHHHHHHHCCC
Confidence 2222233456777776
No 96
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=24.41 E-value=37 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=18.0
Q ss_pred EEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 70 WIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 70 wIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
.|..||+|+|++.. ....|+|+....
T Consensus 159 ~i~~Gd~v~vd~~~-~~~~g~ivv~~~ 184 (236)
T 3bdn_A 159 SFPDGMLILVDPEQ-AVEPGDFCIARL 184 (236)
T ss_dssp CCCSSCEEEECCSS-CCCTTSEEEEES
T ss_pred cCCCCCEEEECCCC-CCCCCcEEEEEE
Confidence 37888888888765 456677655544
No 97
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=24.19 E-value=1.3e+02 Score=29.46 Aligned_cols=70 Identities=7% Similarity=0.024 Sum_probs=54.5
Q ss_pred CC-eEEEEEEEeCCCceEEEEeCCCCEEEEEecc---cc-cc--eEEEccCCEEEEEeccCCCCceEEEEEcChhHHH
Q 032228 31 DG-QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRG---KM-HK--KVWIGAGDIILVGLRDYQDDKADVILKYMPDEAR 101 (145)
Q Consensus 31 e~-q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpG---K~-Rk--~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~deik 101 (145)
.| .+.|+|+.+...+.| |.+..|..=|+|++- .+ -+ .=-++.||.|.|.....+..+++|..-+...+++
T Consensus 902 ~G~iv~G~V~~V~~fGaF-V~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~ 978 (1219)
T 3psi_A 902 KGSIIPVRVERFWHNDII-CTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVK 978 (1219)
T ss_dssp TTCEEEEEEEEECSSCEE-EECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHHHC
T ss_pred CCCEEEEEEEEEecceEE-EEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHHhc
Confidence 44 578999999887766 778889998998763 22 11 2238999999999998888899998888887775
No 98
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=24.15 E-value=57 Score=24.51 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=36.1
Q ss_pred CeEEEEEEEeCC------Cc----eEEEEe-CCCCEEEEEecccccceEEEccCCEEEEEe
Q 032228 32 GQEYAQVLRMLG------NG----RCEAMC-IDGAKRLCHIRGKMHKKVWIGAGDIILVGL 81 (145)
Q Consensus 32 ~q~ig~Vv~~lG------~~----~~~V~~-~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~ 81 (145)
-|.-|.|++..+ |+ ..+|++ .||.+++|.|||==.- -.|.+.|.|||.-
T Consensus 46 pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg~G~l-~~lqEh~~VLVrG 105 (142)
T 2xzm_L 46 SHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCL-NFLAENDEVLVAG 105 (142)
T ss_dssp SEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCSSSGG-GTCCTTCEEEEEE
T ss_pred CccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCCCCcc-cccccCCEEEEEe
Confidence 477777776653 22 457888 5999999999986541 1378999999986
No 99
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=23.98 E-value=51 Score=27.19 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=35.2
Q ss_pred cCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecc-----cc-cce---------EEEccCCEEEEEecc
Q 032228 28 FKEDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCHIRG-----KM-HKK---------VWIGAGDIILVGLRD 83 (145)
Q Consensus 28 ~p~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~IpG-----K~-Rk~---------IwIk~GD~VlVe~~~ 83 (145)
.|..|+ ++|+|+.+.+ ..+.|.+.....-+++++. -. |++ =.+++||+|.+....
T Consensus 92 ~P~vGDvViG~Vt~V~~-~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVis 162 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQ-KRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQA 162 (308)
T ss_dssp CCCSSBCCCEEEEEEET-TEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEE
T ss_pred CCCCCCEEEEEEEEEeC-ceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEE
Confidence 577665 8999999865 4566888765555667642 21 222 258999999865543
No 100
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=23.67 E-value=1.3e+02 Score=19.72 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCCe-EEEEEEEeCC-CceEEEEeCCCCEEEEE
Q 032228 30 EDGQ-EYAQVLRMLG-NGRCEAMCIDGAKRLCH 60 (145)
Q Consensus 30 ~e~q-~ig~Vv~~lG-~~~~~V~~~dG~~~la~ 60 (145)
++|. ..|+|+++.. .+.+.|+..||.++.++
T Consensus 25 tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~ 57 (66)
T 2eqj_A 25 SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVL 57 (66)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEE
Confidence 4553 6799999998 49999999999998775
No 101
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=23.46 E-value=39 Score=24.95 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=24.9
Q ss_pred EEEEEecccccceEEEccCCEEEEEeccCCCCceEEEEEcC
Q 032228 56 KRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 56 ~~la~IpGK~Rk~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~ 96 (145)
.++.++.|-=...--|..||+|+|++.. ....|+|+....
T Consensus 109 ~f~l~v~GdSM~~p~i~~GD~viv~~~~-~~~~G~ivv~~~ 148 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICDGDLVLVRRQD-WAQNGDIVAAMV 148 (196)
T ss_dssp EEEEECCSSTTGGGTCCTTCEEEEEECS-CCCTTCEEEEEE
T ss_pred EEEEEEeCCCcCCCCCCCCCEEEEeccC-cCCCCCEEEEEE
Confidence 5555555543322358899999999874 345677654443
No 102
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=23.21 E-value=28 Score=27.03 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=8.7
Q ss_pred EccCCEEEEEe
Q 032228 71 IGAGDIILVGL 81 (145)
Q Consensus 71 Ik~GD~VlVe~ 81 (145)
+++||+|++..
T Consensus 50 ~~rGDIvvf~~ 60 (248)
T 1b12_A 50 PKRGDIVVFKY 60 (248)
T ss_dssp CCTTCEEEEEC
T ss_pred CCCCcEEEEEe
Confidence 67888888875
No 103
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=23.15 E-value=15 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.0
Q ss_pred EEecccccceEEEccCCEEEEEeccC
Q 032228 59 CHIRGKMHKKVWIGAGDIILVGLRDY 84 (145)
Q Consensus 59 a~IpGK~Rk~IwIk~GD~VlVe~~~~ 84 (145)
..||-.+|+.+=|++||.|.+...++
T Consensus 62 itIPkeiR~~lgi~~Gd~l~~~~~~~ 87 (92)
T 2glw_A 62 VIIPKALRDVIGIKPGEVIEVLLLGH 87 (92)
T ss_dssp EECCHHHHHHHTCCTTCEEEEEEEEE
T ss_pred EECcHHHHHHcCCCCCCEEEEEEeCc
Confidence 35899999999999999999987643
No 104
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=22.42 E-value=60 Score=20.05 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=17.1
Q ss_pred ceEEEEEcChhHHHHHHHcCCCCcc
Q 032228 88 KADVILKYMPDEARLLKAYGELPET 112 (145)
Q Consensus 88 Kg~Ii~ry~~deik~Lrk~g~wP~~ 112 (145)
.--++.|+++||+..|+. ..|..
T Consensus 13 tkpvvvrlypdeiealks--rvpan 35 (53)
T 2kke_A 13 TKPVVVRLYPDEIEALKS--RVPAN 35 (53)
T ss_dssp SEEEEEEECHHHHHHHHT--TCCSS
T ss_pred CCceEEEeChhHHHHHHh--cCCCc
Confidence 456889999999999853 34543
No 105
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.32 E-value=64 Score=24.34 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=35.6
Q ss_pred CeEEEEEEEeCC------Cc----eEEEEeC-CCCEEEEEecccccceEEEccCCEEEEEe
Q 032228 32 GQEYAQVLRMLG------NG----RCEAMCI-DGAKRLCHIRGKMHKKVWIGAGDIILVGL 81 (145)
Q Consensus 32 ~q~ig~Vv~~lG------~~----~~~V~~~-dG~~~la~IpGK~Rk~IwIk~GD~VlVe~ 81 (145)
-|.-|+|++..+ |+ ..+|++. ||.+++|.|||==.- -.|.+.|.|||.-
T Consensus 48 pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~Ghl-n~lqEh~~VLV~G 107 (147)
T 3j20_N 48 PQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAI-KFIDEHDEVIIEG 107 (147)
T ss_dssp SCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEEEECCSSSGG-GTCCTTCEEEEEE
T ss_pred CccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEEEEcCCchhh-cccccCCEEEEee
Confidence 466666666553 32 3568885 999999999986441 1488999999986
No 106
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=22.21 E-value=67 Score=27.68 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=33.2
Q ss_pred eEEEEEEEe---CCCce--EEEEeCCCCEEEEEec--ccccceE-EEccCCEEEEEec
Q 032228 33 QEYAQVLRM---LGNGR--CEAMCIDGAKRLCHIR--GKMHKKV-WIGAGDIILVGLR 82 (145)
Q Consensus 33 q~ig~Vv~~---lG~~~--~~V~~~dG~~~la~Ip--GK~Rk~I-wIk~GD~VlVe~~ 82 (145)
-+.|+|... .-+++ |++....+....+... ++||+.+ +..+||.|.|-=+
T Consensus 288 ~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 288 RLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp EEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred EEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 367788755 34444 4444444455566666 7899955 7799999999755
No 107
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.78 E-value=75 Score=26.41 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=31.5
Q ss_pred ecccccc-eEEEccCCEEEEEeccCCCCceEEEEEcChhHHHHHHHcCCCCcccccc
Q 032228 61 IRGKMHK-KVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLN 116 (145)
Q Consensus 61 IpGK~Rk-~IwIk~GD~VlVe~~~~~~~Kg~Ii~ry~~deik~Lrk~g~wP~~f~~~ 116 (145)
||.|+.+ +|||. -|+++|..- + ++++.|..-|+..|.=|.+|...
T Consensus 145 iptki~~G~I~i~-~d~~v~k~G-------~---~v~~~~A~lL~~l~i~p~~~~l~ 190 (339)
T 3j21_k 145 IPARIERGKVTIQ-KDTVVLKAG-------E---EITPELANILNALGIQPLEVGLD 190 (339)
T ss_dssp CCEEEETTEEEEC-SCEEEECTT-------S---BCCHHHHHHHHHHTCCCSCCSCE
T ss_pred CCeEeccCeEEEc-cceEEEecC-------C---CcCHHHHHHHHHcCCCcEEeeee
Confidence 4445555 66663 356666543 2 46899999999999999998763
No 108
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=21.70 E-value=1.5e+02 Score=25.85 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecc
Q 032228 29 KEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRG 63 (145)
Q Consensus 29 p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpG 63 (145)
....+..|+|+++.-+..+.|...+|.++..+|.|
T Consensus 20 ~~~~~~~~~V~~V~DGDTi~v~~~~g~~~~VRL~g 54 (570)
T 3bdl_A 20 HMDKQFVAKVMQVLNADAIVVKLNSGDYKTIHLSS 54 (570)
T ss_dssp -CCSEEEEEEEEEETTTEEEEECTTSCEEEEEETT
T ss_pred cCCcEEEEEEEEEccCCEEEEECCCCCEEEEEEEE
Confidence 34567899999999999999998899766666654
No 109
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=21.57 E-value=20 Score=33.12 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-----eEEEccCCEEEEEeccCCCCceEEEEE
Q 032228 29 KEDGQ-EYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHK-----KVWIGAGDIILVGLRDYQDDKADVILK 94 (145)
Q Consensus 29 p~e~q-~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk-----~IwIk~GD~VlVe~~~~~~~Kg~Ii~r 94 (145)
+..|+ +.|+|+++...+.| |.+.+|..=|+|++---.. .=.++.||.|.|.....+. +|+|-..
T Consensus 625 ~~vG~i~~G~V~~i~~fGaF-Vel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS 694 (723)
T 3cdi_A 625 IEVGRVYTGKVTRIVDFGAF-VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLS 694 (723)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hhcCcEEEEEEEEEecceEE-EEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEE
Confidence 33443 68999999888877 6777788888888753222 2258999999999988776 7877543
No 110
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=21.18 E-value=2.2e+02 Score=23.09 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=43.2
Q ss_pred CcccccCC--Ccccccceee-ccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEE
Q 032228 9 GKNRKRGK--NEADDEKREL-IFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVG 80 (145)
Q Consensus 9 ~kn~rr~~--~~~~~~~~el-~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe 80 (145)
|-||.|+- -.++.....+ -.+..|++-.....--|+....+..++|.++.-.||.=- .+-|++||.|.+.
T Consensus 152 GgNRGRGQvYP~G~KSNN~v~~as~~G~I~~I~~~ekgg~~vtI~~~~G~~v~~~iP~Gp--~LiV~~G~~v~~~ 224 (249)
T 1ci3_M 152 GANRGRGQIYPTGEKSNNAVYNASAAGVITAIAKADDGSAEVKIRTEDGTTIVDKIPAGP--ELIVSEGEEVAAG 224 (249)
T ss_dssp EEEESCCSBCTTSCBCSSSCCBCSSCEEEEEEEECTTSCEEEEEECTTSCEEEEEECSSS--CBCCCTTCEECTT
T ss_pred eccccccccCCCCccccCceecccCCeEEEEEEEcCCCCEEEEEECCCCCEEEEecCCCC--eEEEecCCEEecC
Confidence 34666653 1222223333 334455555555545667777777789999998888422 6668999988765
No 111
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=21.11 E-value=71 Score=24.06 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCeEEEEEEEeCC------C----ceEEEEeC-CCCEEEEEecccccceEEEccCCEEEEEe
Q 032228 31 DGQEYAQVLRMLG------N----GRCEAMCI-DGAKRLCHIRGKMHKKVWIGAGDIILVGL 81 (145)
Q Consensus 31 e~q~ig~Vv~~lG------~----~~~~V~~~-dG~~~la~IpGK~Rk~IwIk~GD~VlVe~ 81 (145)
.-|.-|.|++..+ | -..+|++. ||.+++|.|||==.- -.|.+.|.|||.-
T Consensus 46 ~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~G~l-~~lqEh~~VLV~G 106 (145)
T 3u5c_X 46 SSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCL-NFVDENDEVLLAG 106 (145)
T ss_dssp SSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECCSSSCG-GGCCTTCEEEEEC
T ss_pred CCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeCCCCcc-ccCCcCCEEEEEe
Confidence 4577888887765 2 35788995 999999999986441 1378999999986
No 112
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.64 E-value=1.8e+02 Score=18.64 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCCe-EEEEEEEeCCCc-eEEEEeCCCCEEEEEe
Q 032228 30 EDGQ-EYAQVLRMLGNG-RCEAMCIDGAKRLCHI 61 (145)
Q Consensus 30 ~e~q-~ig~Vv~~lG~~-~~~V~~~dG~~~la~I 61 (145)
++|. ..|+|+++-... .+.|+..|+.+.-|..
T Consensus 15 sDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~ 48 (58)
T 4hcz_A 15 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLW 48 (58)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred cCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEh
Confidence 3444 568888887766 8999999999887764
No 113
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=20.57 E-value=1.5e+02 Score=23.22 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=24.0
Q ss_pred eEEEEeCCCCEEEEEecccccceEEEccCCEEEEEecc
Q 032228 46 RCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRD 83 (145)
Q Consensus 46 ~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~~~ 83 (145)
..-|..+||....+....=++...-|.+||.|+|-...
T Consensus 167 ~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~ 204 (236)
T 3p42_A 167 NVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSA 204 (236)
T ss_dssp EEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBCT
T ss_pred cEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCCc
Confidence 44566677777666655333345667788887776543
Done!