BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032229
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28295|VWF_CANFA von Willebrand factor OS=Canis familiaris GN=VWF PE=1 SV=2
Length = 2813
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 62 NFN-YNVKDFNTKKGKITSGSSSSSKSWSLADPEFQRKKRVA 102
NFN + DF T++G +TS + SW+L+ E QR KRV+
Sbjct: 164 NFNIFAEDDFRTQEGTLTSDPYDFANSWALSSGE-QRCKRVS 204
>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 GN=rep PE=3 SV=1
Length = 7095
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 30 DPPPPRAPAAASYDLR--CYSASYAQSQM---SNFDNNFNYNVKDFNTKKGKITSGSSSS 84
DP A A+A YDLR C+S + S + + NFN + DF KG + GSS
Sbjct: 4742 DPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFVLSKGLLKEGSSVD 4801
Query: 85 SKSW 88
K +
Sbjct: 4802 LKHF 4805
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec)
GN=rep PE=3 SV=1
Length = 7059
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 30 DPPPPRAPAAASYDLR--CYSASYAQSQM---SNFDNNFNYNVKDFNTKKGKITSGSSSS 84
DP A A+A YDLR C+S + S + + NFN + DF KG + GSS
Sbjct: 4742 DPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFILSKGLLKEGSSVD 4801
Query: 85 SKSW 88
K +
Sbjct: 4802 LKHF 4805
>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) GN=rep
PE=3 SV=1
Length = 7094
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 30 DPPPPRAPAAASYDLR--CYSASYAQSQM---SNFDNNFNYNVKDFNTKKGKITSGSSSS 84
DP A A+A YDLR C+S + S + + NFN + DF KG + GSS
Sbjct: 4742 DPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFILSKGLLKEGSSVD 4801
Query: 85 SKSW 88
K +
Sbjct: 4802 LKHF 4805
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain
98TXSF-110-LUN) GN=rep PE=3 SV=1
Length = 7094
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 30 DPPPPRAPAAASYDLR--CYSASYAQSQM---SNFDNNFNYNVKDFNTKKGKITSGSSSS 84
DP A A+A YDLR C+S + S + + NFN + DF KG + GSS
Sbjct: 4742 DPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFILSKGLLKEGSSVD 4801
Query: 85 SKSW 88
K +
Sbjct: 4802 LKHF 4805
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain
98TXSF-110-ENT) GN=rep PE=3 SV=1
Length = 7094
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 30 DPPPPRAPAAASYDLR--CYSASYAQSQM---SNFDNNFNYNVKDFNTKKGKITSGSSSS 84
DP A A+A YDLR C+S + S + + NFN + DF KG + GSS
Sbjct: 4742 DPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFILSKGLLKEGSSVD 4801
Query: 85 SKSW 88
K +
Sbjct: 4802 LKHF 4805
>sp|P38092|HEM1_EMENI 5-aminolevulinate synthase, mitochondrial OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=hemA PE=3 SV=2
Length = 648
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1 MEQDYYNRSKSYGPGMMR-NHNHMEITGYYDPPPPRAPAAASYDLRCYSASY-AQSQMSN 58
M +++ ++ PG+ +H+ + P PRAP AA +D Y A Y A+ Q +
Sbjct: 108 MSTEFHKGAQQIHPGLSNATRSHVGASATVSGPTPRAPVAAPFD---YDAFYNAELQKKH 164
Query: 59 FDNNFNY 65
D ++ Y
Sbjct: 165 QDKSYRY 171
>sp|P05788|FM2_BORPE Serotype 2 fimbrial subunit OS=Bordetella pertussis (strain Tohama
I / ATCC BAA-589 / NCTC 13251) GN=fim2 PE=3 SV=1
Length = 207
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 25 ITGYYDPPPPRAPAAASYDLRCYSASYA---QSQMSNFDNNF---NYNVKDFNTKKGKIT 78
+ Y++P P ++ DLR Y YA Q+Q+SN V+ N KIT
Sbjct: 93 VKAYFEPGP--TTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKIT 150
Query: 79 SGSSSSSKSWSLADPEFQ 96
G++ +++ + DPE Q
Sbjct: 151 MGANEATQQAAGFDPEVQ 168
>sp|Q9P0L2|MARK1_HUMAN Serine/threonine-protein kinase MARK1 OS=Homo sapiens GN=MARK1 PE=1
SV=2
Length = 795
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 34 PRAPAAASYDLRCYSASYAQSQMSNFDNNFNYNVKDFNTKKGKITSGSSSSSKSWSLADP 93
P P A SY R + S Q +D KD K G T GS S + L P
Sbjct: 428 PSIPPAVSYTKRPQANSVESEQKEEWD-------KDVARKLGSTTVGSKSEMTASPLVGP 480
Query: 94 EFQRKKRVASYKMYS 108
E ++ + S +YS
Sbjct: 481 ERKKSSTIPSNNVYS 495
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana
GN=CAS PE=1 SV=1
Length = 387
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 34 PRAPAAASYDLRCYSASYAQSQMSNFDNNFNYNVKDFNTKKGKITSGSSSSSKSWSLADP 93
P +A S++ R Y +Q + NY + D ++K K +G P
Sbjct: 204 PPVFSAISFNFRGYKGDLTPAQTLDLLCTKNYLMVDIRSEKDKEKAGI-----------P 252
Query: 94 EF--QRKKRVASYKMYSVEGKVKGSFRKSVRWLKDRSDLGICFLK 136
K RV S + + KVKG R S R + + L I +LK
Sbjct: 253 RLPSNAKNRVISIPLEELPNKVKGIVRNSKRVEAEIAALKISYLK 297
>sp|Q80Y19|RHGBA_MOUSE Rho GTPase-activating protein 11A OS=Mus musculus GN=Arhgap11a PE=1
SV=2
Length = 987
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 90 LADPEFQRKKRVASYKMYSVEGKVKGSFRKSV-RWLKDRSDLGICF 134
L E +R KR+AS K+Y VE G F V R K R L + F
Sbjct: 392 LVSTELRRSKRIASKKVYRVESGKAGCFSPKVSRKEKTRRSLRLKF 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,567,351
Number of Sequences: 539616
Number of extensions: 2189848
Number of successful extensions: 5454
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5439
Number of HSP's gapped (non-prelim): 45
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)