Query 032229
Match_columns 145
No_of_seqs 96 out of 98
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 11:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12023 DUF3511: Domain of un 100.0 2E-30 4.3E-35 171.7 1.4 46 88-133 1-46 (47)
2 PF12388 Peptidase_M57: Dual-a 20.0 41 0.00088 28.1 0.4 13 3-16 150-162 (211)
3 PF07849 DUF1641: Protein of u 14.7 77 0.0017 19.9 0.6 9 90-98 20-28 (42)
4 cd07402 MPP_GpdQ Enterobacter 13.4 88 0.0019 23.6 0.8 39 74-112 200-239 (240)
5 PF02486 Rep_trans: Replicatio 11.1 1E+02 0.0022 23.3 0.5 38 100-137 129-166 (182)
6 PF01372 Melittin: Melittin; 11.1 77 0.0017 19.2 -0.1 9 120-128 16-24 (26)
7 PF01552 Pico_P2B: Picornaviru 10.9 91 0.002 23.5 0.1 14 119-132 77-90 (99)
8 PF13243 Prenyltrans_1: Prenyl 10.1 71 0.0015 21.4 -0.6 18 110-127 41-58 (109)
9 PF15625 CC2D2AN-C2: CC2D2A N- 10.0 1.5E+02 0.0033 22.8 1.1 17 91-107 24-40 (168)
10 COG4702 Uncharacterized conser 9.9 1.3E+02 0.0029 24.9 0.8 18 122-139 74-91 (168)
No 1
>PF12023 DUF3511: Domain of unknown function (DUF3511); InterPro: IPR021899 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.
Probab=99.96 E-value=2e-30 Score=171.65 Aligned_cols=46 Identities=61% Similarity=1.095 Sum_probs=45.2
Q ss_pred ccCCChhHhhhhhhheeeeeeeecceehhhcccchhhhcchhhhHh
Q 032229 88 WSLADPEFQRKKRVASYKMYSVEGKVKGSFRKSVRWLKDRSDLGIC 133 (145)
Q Consensus 88 w~~~dpE~kRkkRVA~Yk~Y~vEGKvK~S~R~sfrWiK~k~s~iv~ 133 (145)
|+|+|||+|||||||+||+|+||||||+|||+||||||++|++||+
T Consensus 1 w~~~dpE~kRkkRVA~Yk~y~vEGKvK~S~R~sfrWiK~k~s~iv~ 46 (47)
T PF12023_consen 1 WGFNDPEMKRKKRVASYKVYAVEGKVKGSLRKSFRWIKNKCSRIVY 46 (47)
T ss_pred CCCCCHHHHHHHHHHhhheeeeehHHHHHHHhhhHHHHHHhhHhhc
Confidence 8999999999999999999999999999999999999999999986
No 2
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=20.00 E-value=41 Score=28.14 Aligned_cols=13 Identities=62% Similarity=1.027 Sum_probs=10.5
Q ss_pred hhhhhhccCCCCCc
Q 032229 3 QDYYNRSKSYGPGM 16 (145)
Q Consensus 3 ~~~~~RSkSy~~gr 16 (145)
-||++|| ||+-+-
T Consensus 150 TD~~~R~-SCG~~~ 162 (211)
T PF12388_consen 150 TDYFNRS-SCGSGG 162 (211)
T ss_pred cCcCCcc-cccccC
Confidence 4899999 996554
No 3
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=14.71 E-value=77 Score=19.92 Aligned_cols=9 Identities=56% Similarity=0.918 Sum_probs=7.6
Q ss_pred CCChhHhhh
Q 032229 90 LADPEFQRK 98 (145)
Q Consensus 90 ~~dpE~kRk 98 (145)
+.|||++|=
T Consensus 20 l~Dpdvqrg 28 (42)
T PF07849_consen 20 LRDPDVQRG 28 (42)
T ss_pred HcCHHHHHH
Confidence 599999984
No 4
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=13.37 E-value=88 Score=23.64 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCccccCCCCCcCcccCCChhHhhhhhhheeeeeee-ecc
Q 032229 74 KGKITSGSSSSSKSWSLADPEFQRKKRVASYKMYSV-EGK 112 (145)
Q Consensus 74 KgKs~~~~~ss~~sw~~~dpE~kRkkRVA~Yk~Y~v-EGK 112 (145)
.|.-.-.+.+.+-.|...+|+..|--+.++|+.|.+ |++
T Consensus 200 ~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 200 GGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred CCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEecCC
Confidence 444433344444677779999999999999999998 664
No 5
>PF02486 Rep_trans: Replication initiation factor; InterPro: IPR003491 Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50 [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006270 DNA-dependent DNA replication initiation
Probab=11.12 E-value=1e+02 Score=23.27 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=29.6
Q ss_pred hhheeeeeeeecceehhhcccchhhhcchhhhHhhhhh
Q 032229 100 RVASYKMYSVEGKVKGSFRKSVRWLKDRSDLGICFLKS 137 (145)
Q Consensus 100 RVA~Yk~Y~vEGKvK~S~R~sfrWiK~k~s~iv~~l~~ 137 (145)
.+...++-...-.++.++-+.++|++..|...+..|..
T Consensus 129 ~~~~~~~~~~~~~~~~~~e~~~~wl~~q~~~~l~~l~~ 166 (182)
T PF02486_consen 129 DVEKIRLSTKKKQKKLSLERSLRWLKRQVGPTLAMLKE 166 (182)
T ss_pred ccccccccccceeccccHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665566667889999999999999988877754
No 6
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=11.10 E-value=77 Score=19.22 Aligned_cols=9 Identities=22% Similarity=0.951 Sum_probs=6.7
Q ss_pred cchhhhcch
Q 032229 120 SVRWLKDRS 128 (145)
Q Consensus 120 sfrWiK~k~ 128 (145)
-+.|||+|-
T Consensus 16 lISWIK~kr 24 (26)
T PF01372_consen 16 LISWIKNKR 24 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 367999874
No 7
>PF01552 Pico_P2B: Picornavirus 2B protein; InterPro: IPR002527 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0000166 nucleotide binding, 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0008233 peptidase activity, 0008234 cysteine-type peptidase activity, 0016740 transferase activity, 0016779 nucleotidyltransferase activity, 0016787 hydrolase activity, 0018144 RNA-protein covalent cross-linking, 0019012 virion
Probab=10.88 E-value=91 Score=23.52 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=10.5
Q ss_pred ccchhhhcchhhhH
Q 032229 119 KSVRWLKDRSDLGI 132 (145)
Q Consensus 119 ~sfrWiK~k~s~iv 132 (145)
.=|+|+|.|..+.+
T Consensus 77 sPw~~LK~Kvc~~l 90 (99)
T PF01552_consen 77 SPWRWLKSKVCKWL 90 (99)
T ss_pred CHHHHHHHHHHhHh
Confidence 35889998877664
No 8
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=10.05 E-value=71 Score=21.40 Aligned_cols=18 Identities=22% Similarity=0.649 Sum_probs=14.1
Q ss_pred ecceehhhcccchhhhcc
Q 032229 110 EGKVKGSFRKSVRWLKDR 127 (145)
Q Consensus 110 EGKvK~S~R~sfrWiK~k 127 (145)
++.+...|++++.||.+.
T Consensus 41 ~~~~~~ai~ka~~~l~~~ 58 (109)
T PF13243_consen 41 DAAVDEAIKKAIDWLLSH 58 (109)
T ss_dssp TS-SSBSSHHHHHHHHH-
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 458899999999999875
No 9
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=9.96 E-value=1.5e+02 Score=22.78 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=15.0
Q ss_pred CChhHhhhhhhheeeee
Q 032229 91 ADPEFQRKKRVASYKMY 107 (145)
Q Consensus 91 ~dpE~kRkkRVA~Yk~Y 107 (145)
.-.|.+||++|.+++.|
T Consensus 24 p~~E~~RR~~~~~~~~~ 40 (168)
T PF15625_consen 24 PRAEQNRRQRVQKTRYY 40 (168)
T ss_pred ChhHhhhHHHhhheeEE
Confidence 44799999999999988
No 10
>COG4702 Uncharacterized conserved protein [Function unknown]
Probab=9.85 E-value=1.3e+02 Score=24.85 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=11.6
Q ss_pred hhhhcchhhhHhhhhhhh
Q 032229 122 RWLKDRSDLGICFLKSTY 139 (145)
Q Consensus 122 rWiK~k~s~iv~~l~~~~ 139 (145)
-||+.|+.-+..|..|+|
T Consensus 74 ~WirRK~ntV~Rf~~SSy 91 (168)
T COG4702 74 DWIRRKRNTVRRFGHSSY 91 (168)
T ss_pred HHHHHHHHHHHHHhhhHH
Confidence 466666666666666666
Done!