Query 032229
Match_columns 145
No_of_seqs 96 out of 98
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 18:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ifp_A PF3 inovirus, major coa 20.4 19 0.00064 23.0 -0.3 13 116-128 31-43 (44)
2 4g6v_B CDII; tRNAse, toxin, im 19.9 21 0.00071 26.7 -0.2 8 42-49 3-10 (111)
3 1dul_A Signal recognition part 14.0 54 0.0018 22.0 0.8 8 96-103 36-43 (69)
4 1mfq_C SRP54, signal recogniti 11.2 73 0.0025 23.7 0.8 11 93-103 81-96 (129)
5 3u3g_D Ribonuclease H, RNAse H 10.5 86 0.0029 20.5 0.9 27 119-145 114-140 (140)
6 1hq1_A Signal recognition part 10.4 80 0.0027 22.5 0.8 13 91-103 62-77 (105)
7 3c01_A Surface presentation of 10.2 99 0.0034 19.6 1.1 11 91-101 15-25 (48)
8 1w8x_N Protein P31, protein C, 9.6 1.3E+02 0.0043 22.8 1.6 27 19-48 5-31 (126)
9 1zuh_A Shikimate kinase; alpha 9.3 87 0.003 21.0 0.6 17 19-35 3-19 (168)
10 3qrx_B Melittin; calcium-bindi 8.7 71 0.0024 18.5 -0.1 9 120-128 16-24 (26)
No 1
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=20.36 E-value=19 Score=22.99 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=9.2
Q ss_pred hhcccchhhhcch
Q 032229 116 SFRKSVRWLKDRS 128 (145)
Q Consensus 116 S~R~sfrWiK~k~ 128 (145)
.+--++||||..+
T Consensus 31 avvlgirwikaqf 43 (44)
T 1ifp_A 31 AVVLGIRWIKAQF 43 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHhHhhc
Confidence 3445899999754
No 2
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=19.91 E-value=21 Score=26.67 Aligned_cols=8 Identities=50% Similarity=0.961 Sum_probs=6.5
Q ss_pred Cccccccc
Q 032229 42 YDLRCYSA 49 (145)
Q Consensus 42 ~DLRsYSa 49 (145)
-|||||++
T Consensus 3 IDlrCY~t 10 (111)
T 4g6v_B 3 IDLFCYLS 10 (111)
T ss_dssp CEEEEEES
T ss_pred eeEEEEEe
Confidence 49999984
No 3
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=14.01 E-value=54 Score=21.98 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.8
Q ss_pred hhhhhhhe
Q 032229 96 QRKKRVAS 103 (145)
Q Consensus 96 kRkkRVA~ 103 (145)
.||+|||.
T Consensus 36 SR~~RIA~ 43 (69)
T 1dul_A 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 4
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=11.20 E-value=73 Score=23.70 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=9.3
Q ss_pred hhHh-----hhhhhhe
Q 032229 93 PEFQ-----RKKRVAS 103 (145)
Q Consensus 93 pE~k-----RkkRVA~ 103 (145)
|++= ||+|||.
T Consensus 81 P~ii~~~~SRk~RIA~ 96 (129)
T 1mfq_C 81 AKVFSKQPGRIQRVAR 96 (129)
T ss_dssp HHHHHHCTHHHHHHHH
T ss_pred cccccCChHHHHHHHc
Confidence 8876 9999985
No 5
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=10.48 E-value=86 Score=20.48 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=20.8
Q ss_pred ccchhhhcchhhhHhhhhhhhhhhccC
Q 032229 119 KSVRWLKDRSDLGICFLKSTYLQSAVS 145 (145)
Q Consensus 119 ~sfrWiK~k~s~iv~~l~~~~~~~~~~ 145 (145)
=.|.||+..+.+..+.|-..-+..++|
T Consensus 114 v~~~~V~~~~N~~AD~LA~~a~~~~~~ 140 (140)
T 3u3g_D 114 LVFVHIPREKNARADELVNEAIDKALS 140 (140)
T ss_dssp CEEEECCGGGGHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCchhhHHHHHHHHHHHHhccC
Confidence 368999999999999887666665543
No 6
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=10.39 E-value=80 Score=22.53 Aligned_cols=13 Identities=54% Similarity=0.953 Sum_probs=9.2
Q ss_pred CChhH---hhhhhhhe
Q 032229 91 ADPEF---QRKKRVAS 103 (145)
Q Consensus 91 ~dpE~---kRkkRVA~ 103 (145)
.+|++ .||+|||.
T Consensus 62 ~~P~ii~~SR~~RIA~ 77 (105)
T 1hq1_A 62 AKPEIIKGSRKRRIAA 77 (105)
T ss_dssp HCGGGCCHHHHHHHHH
T ss_pred hChhhcCHHHHHHHHc
Confidence 34554 69999984
No 7
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=10.17 E-value=99 Score=19.56 Aligned_cols=11 Identities=36% Similarity=0.727 Sum_probs=8.6
Q ss_pred CChhHhhhhhh
Q 032229 91 ADPEFQRKKRV 101 (145)
Q Consensus 91 ~dpE~kRkkRV 101 (145)
+||++|-++|=
T Consensus 15 GdP~iK~~~R~ 25 (48)
T 3c01_A 15 GNPEVKSKRRE 25 (48)
T ss_pred CCHHHHHHHHH
Confidence 79999977663
No 8
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=9.55 E-value=1.3e+02 Score=22.80 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=19.2
Q ss_pred cCCccccccccCCCCCCCCCCCCCcccccc
Q 032229 19 NHNHMEITGYYDPPPPRAPAAASYDLRCYS 48 (145)
Q Consensus 19 ~~~~mqie~Y~gg~~~~~~~~~~~DLRsYS 48 (145)
|-|+|-+.+-|.|.-+. .+++.+|+|=
T Consensus 5 ~pn~mtvtp~YNG~~~~---~GP~sv~~~~ 31 (126)
T 1w8x_N 5 NPNQMTVTPVYNGCDSG---EGPQSVRGYF 31 (126)
T ss_dssp CCCCCCCCCCCTTCCSS---CCEECCEEES
T ss_pred CCCceEEeccccCccCC---CCchhhhhhh
Confidence 45778888777666443 6788899884
No 9
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=9.31 E-value=87 Score=21.05 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=8.5
Q ss_pred cCCccccccccCCCCCC
Q 032229 19 NHNHMEITGYYDPPPPR 35 (145)
Q Consensus 19 ~~~~mqie~Y~gg~~~~ 35 (145)
.|.|||+-...|+.+++
T Consensus 3 ~~~~~~~i~l~G~~GsG 19 (168)
T 1zuh_A 3 HHHHMQHLVLIGFMGSG 19 (168)
T ss_dssp -----CEEEEESCTTSS
T ss_pred cccccceEEEECCCCCC
Confidence 47899977777766554
No 10
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=8.71 E-value=71 Score=18.50 Aligned_cols=9 Identities=22% Similarity=0.859 Sum_probs=6.5
Q ss_pred cchhhhcch
Q 032229 120 SVRWLKDRS 128 (145)
Q Consensus 120 sfrWiK~k~ 128 (145)
-+.|||+|-
T Consensus 16 liSWiK~kr 24 (26)
T 3qrx_B 16 LISWIKRKR 24 (26)
T ss_pred HHHHHHHHh
Confidence 367999874
Done!