Query 032229
Match_columns 145
No_of_seqs 96 out of 98
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 18:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmwa2 b.1.1.4 (A:113-178) CD 23.3 10 0.00075 24.3 0.5 23 105-127 3-25 (66)
2 d1hd7a_ d.151.1.1 (A:) DNA rep 12.1 11 0.00078 24.8 -1.6 31 100-134 20-51 (275)
3 d1zs4a1 a.35.1.9 (A:4-81) Regu 10.9 29 0.0021 22.9 0.3 18 87-104 56-74 (78)
4 d1uvqa2 d.19.1.1 (A:2-84) Clas 10.1 25 0.0018 23.2 -0.3 47 44-90 7-56 (83)
5 d1xiwb_ b.1.1.4 (B:) CD3 delta 7.6 48 0.0035 21.4 0.4 24 105-128 4-27 (74)
6 d2ih2a2 d.287.1.1 (A:244-413) 7.5 58 0.0042 24.0 0.8 17 127-143 124-140 (170)
7 d1qb2a_ a.36.1.1 (A:) SRP54M { 7.1 51 0.0038 21.6 0.3 7 97-103 77-83 (107)
8 d1dula_ a.36.1.1 (A:) Signal s 6.0 61 0.0044 20.3 0.2 8 96-103 36-43 (69)
9 d1iaka2 d.19.1.1 (A:1-81) Clas 5.4 51 0.0037 21.5 -0.5 47 44-90 6-55 (82)
10 d2gtsa1 a.25.5.1 (A:4-80) Hypo 4.8 1E+02 0.0075 19.8 0.7 16 125-140 44-59 (77)
No 1
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=23.32 E-value=10 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred eeeeeecceehhhcccchhhhcc
Q 032229 105 KMYSVEGKVKGSFRKSVRWLKDR 127 (145)
Q Consensus 105 k~Y~vEGKvK~S~R~sfrWiK~k 127 (145)
+|+..|+||--+--.++.|||+.
T Consensus 3 ~v~e~edkV~L~Cn~sI~w~k~~ 25 (66)
T d1xmwa2 3 EVLEAEDKVILKCNSSITLLQGT 25 (66)
T ss_dssp EEEEETTEEEEECSSSCEEEEEC
T ss_pred ceEecCceEEEEccCeEEEccCc
Confidence 68899999988888899999995
No 2
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.05 E-value=11 Score=24.84 Aligned_cols=31 Identities=19% Similarity=0.702 Sum_probs=18.8
Q ss_pred hhheeeeeeeecceehhhcc-cchhhhcchhhhHhh
Q 032229 100 RVASYKMYSVEGKVKGSFRK-SVRWLKDRSDLGICF 134 (145)
Q Consensus 100 RVA~Yk~Y~vEGKvK~S~R~-sfrWiK~k~s~iv~~ 134 (145)
||++|+| .| ++..+++ -+.||+..=-+||+.
T Consensus 20 ki~S~Nv---nG-lr~~~~~~~~~~i~~~~pDIi~L 51 (275)
T d1hd7a_ 20 KICSWNV---DG-LRAWIKKKGLDWVKEEAPDILCL 51 (275)
T ss_dssp EEEEEEC---SS-HHHHHHTTHHHHHHHHCCSEEEE
T ss_pred EEEEEEe---cc-HHhhhhccHHHHHHhCCCCEEEE
Confidence 7999998 23 1223333 357888776666653
No 3
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=10.89 E-value=29 Score=22.87 Aligned_cols=18 Identities=28% Similarity=0.700 Sum_probs=14.8
Q ss_pred cccCCChhHhhh-hhhhee
Q 032229 87 SWSLADPEFQRK-KRVASY 104 (145)
Q Consensus 87 sw~~~dpE~kRk-kRVA~Y 104 (145)
-|+..|.||-|- ||||.|
T Consensus 56 E~GV~D~ema~Lak~vA~~ 74 (78)
T d1zs4a1 56 EWGVVDDDMARLARQVAAI 74 (78)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHH
Confidence 588999999886 788865
No 4
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=10.06 E-value=25 Score=23.15 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=24.9
Q ss_pred cccccccccccccccCCCCCCCCccc---ccccCCccccCCCCCcCcccC
Q 032229 44 LRCYSASYAQSQMSNFDNNFNYNVKD---FNTKKGKITSGSSSSSKSWSL 90 (145)
Q Consensus 44 LRsYSaSYa~S~~~~~~~~~~~~~kd---~k~KKgKs~~~~~ss~~sw~~ 90 (145)
+=+|.+++.+|+.+..++-..+.+.+ +-++|++..+.-+..+..-+|
T Consensus 7 v~~yg~~~yqs~~psGey~~~fDGdE~fyvDl~kKetVw~lPeF~~~~~F 56 (83)
T d1uvqa2 7 VASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLERKETAWRWPEFSKFGGF 56 (83)
T ss_dssp EEEEEEEEEETTTTEEEEEEEETTEEEEEEETTTTEEECSSGGGGGGCBC
T ss_pred eeeccceEEEecCCCccEeeccCCcEEEEEEccCCeEEEeCCCcccCcCc
Confidence 34677777777765444433334443 556666655544433333333
No 5
>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.63 E-value=48 Score=21.37 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=19.7
Q ss_pred eeeeeecceehhhcccchhhhcch
Q 032229 105 KMYSVEGKVKGSFRKSVRWLKDRS 128 (145)
Q Consensus 105 k~Y~vEGKvK~S~R~sfrWiK~k~ 128 (145)
.+...||+|--+--.+|.|+|+.-
T Consensus 4 ~v~e~e~~V~L~Cn~si~W~k~~~ 27 (74)
T d1xiwb_ 4 PIEELEDRVFVNCNTSITWVEGTV 27 (74)
T ss_dssp CEEEETTEEEEECSSCEEEEEECC
T ss_pred eeeecCCeEEEEccCeeEEecCCc
Confidence 356788999888889999999874
No 6
>d2ih2a2 d.287.1.1 (A:244-413) DNA methylase TaqI, C-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=7.52 E-value=58 Score=23.99 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.6
Q ss_pred chhhhHhhhhhhhhhhc
Q 032229 127 RSDLGICFLKSTYLQSA 143 (145)
Q Consensus 127 k~s~iv~~l~~~~~~~~ 143 (145)
.-..||.+|||.++|--
T Consensus 124 ~~~eVV~~LNSe~iqry 140 (170)
T d2ih2a2 124 DPSSLVQWLNSEAMQKH 140 (170)
T ss_dssp CHHHHHHHHTSHHHHHH
T ss_pred CHHHHHHHHhHHHHHHH
Confidence 34678999999998853
No 7
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.06 E-value=51 Score=21.57 Aligned_cols=7 Identities=57% Similarity=0.686 Sum_probs=6.2
Q ss_pred hhhhhhe
Q 032229 97 RKKRVAS 103 (145)
Q Consensus 97 RkkRVA~ 103 (145)
|++|||.
T Consensus 77 R~~RIA~ 83 (107)
T d1qb2a_ 77 RIQRVAR 83 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999984
No 8
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=6.03 E-value=61 Score=20.29 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.5
Q ss_pred hhhhhhhe
Q 032229 96 QRKKRVAS 103 (145)
Q Consensus 96 kRkkRVA~ 103 (145)
-|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T d1dula_ 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHc
Confidence 59999984
No 9
>d1iaka2 d.19.1.1 (A:1-81) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=5.41 E-value=51 Score=21.52 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=23.7
Q ss_pred cccccccccccccccCCCCCCCCccc---ccccCCccccCCCCCcCcccC
Q 032229 44 LRCYSASYAQSQMSNFDNNFNYNVKD---FNTKKGKITSGSSSSSKSWSL 90 (145)
Q Consensus 44 LRsYSaSYa~S~~~~~~~~~~~~~kd---~k~KKgKs~~~~~ss~~sw~~ 90 (145)
+=+|.+.+.+|+.+..++-..+.+.+ +-++|++..+.-...++.-+|
T Consensus 6 v~~yg~~~yqs~~psGe~~~efDGdE~fyvDl~kKetVw~lPeF~~~~~F 55 (82)
T d1iaka2 6 VGSYGITVYQSPGDIGQYTFEFDGDELFYVDLDKKETVWMLPEFAQLRRF 55 (82)
T ss_dssp EEEEEEEEEEETTTEEEEEEEETTEEEEEEETTTTEEEESSGGGGGTCBC
T ss_pred eeecceeEEEecCCCccEeeeeCCcEEEEEEcCCceEEEECCCcccCcCc
Confidence 34676666677655443333334443 456666655544433333333
No 10
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=4.81 E-value=1e+02 Score=19.81 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.0
Q ss_pred hcchhhhHhhhhhhhh
Q 032229 125 KDRSDLGICFLKSTYL 140 (145)
Q Consensus 125 K~k~s~iv~~l~~~~~ 140 (145)
.+++|.++.-|++|+-
T Consensus 44 rd~fsevldnlk~tfn 59 (77)
T d2gtsa1 44 RDKFSEVLDNLKSTFN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 4788999999998873
Done!