BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032230
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
Length = 97
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 79/96 (82%)
Query: 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXX 108
MA+Y VKLITP+GE IEC DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK
Sbjct: 1 MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 60
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct: 61 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96
>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|1DOY|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|2KAJ|A Chain A, Nmr Structure Of Gallium Substituted Ferredoxin
Length = 96
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 78/95 (82%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
A+Y VKLITP+GE IEC DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK
Sbjct: 1 ASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct: 61 QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95
>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin
And Ferredoxin:thioredoxin Reductase
pdb|2PVO|D Chain D, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 96
Score = 142 bits (358), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/95 (69%), Positives = 78/95 (82%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
A+Y VKLITP+GE IEC DDTYILDAAE+AG++LPYSCRAG+CSTCAGK
Sbjct: 1 ASYTVKLITPDGESSIECSDDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct: 61 QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95
>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
pdb|3P63|B Chain B, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
Length = 96
Score = 139 bits (349), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/95 (69%), Positives = 74/95 (77%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
ATYKV LI P G + IE PDD YILDAAE+AGIDLPYSCRAG+CSTCAGK
Sbjct: 1 ATYKVTLINPTGNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSD +ETHK+EE+
Sbjct: 61 QSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 95
>pdb|1A70|A Chain A, Spinach Ferredoxin
Length = 97
Score = 135 bits (341), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 71/94 (75%)
Query: 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
YKV L+TP G E +CPDD YILDAAE+ GIDLPYSCRAGSCS+CAGK
Sbjct: 3 YKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQS 62
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
FL+DDQID G+VLTC AYP SDVT+ETHK EE++
Sbjct: 63 FLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELT 96
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 74/95 (77%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
ATY VKLITP+GE E +C DD Y+LD AE+ GID+PYSCRAGSCS+CAGK
Sbjct: 1 ATYNVKLITPDGEVEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+D+Q+DAGYVLTC AYPTSDV +ETHK+EE+
Sbjct: 61 QSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEI 95
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 73/96 (76%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
ATY VKLITPEGE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK
Sbjct: 1 ATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
+L+D QI G+VLTC AYPTSDV +ETHK+EE++
Sbjct: 61 QSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELT 96
>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
pdb|1RFK|B Chain B, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
Length = 98
Score = 129 bits (323), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
ATYKV LI EG + IE PDD YILDAAE+AGIDLPYSCRAG+CSTCAGK
Sbjct: 1 ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSD +ETHK+EE+
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 97
>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca
Length = 94
Score = 125 bits (315), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
YKV L TP GE+ IECP+DTYILDAAE+AG+DLPYSCRAG+CS+CAGK
Sbjct: 1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKD 141
FL+D Q+ G+VLTCVAYPTSDVT+ TH++
Sbjct: 61 FLDDAQMGKGFVLTCVAYPTSDVTILTHQE 90
>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k
pdb|1QOB|B Chain B, Ferredoxin Mutation D62k
Length = 98
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61 SKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1FXA|A Chain A, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1FXA|B Chain B, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1QT9|A Chain A, Oxidized [2fe-2s] Ferredoxin From Anabaena Pcc7119
pdb|1CZP|A Chain A, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1CZP|B Chain B, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1EWY|C Chain C, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 98
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k
Length = 98
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 73/97 (75%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSDV ++THK E++
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKKEDL 97
>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a
pdb|1QOG|B Chain B, Ferredoxin Mutation S47a
Length = 98
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+C+TCAGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k
Length = 98
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSDV ++THK++++
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEKDL 97
>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina
Platensis Refined At 2.5 Angstroms Resolution:
Structural Comparisons Of Plant-Type Ferredoxins And An
Electrostatic Potential Analysis
Length = 98
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLIT-PEGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
ATYKV LI EG E I+C DDTYILDAAE+AG+DLPYSCRAG+CSTCAG
Sbjct: 1 ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSD T++TH++E +
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 97
>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k
pdb|1QOF|B Chain B, Ferredoxin Mutation Q70k
Length = 98
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DD+I+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61 SDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|B Chain B, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|C Chain C, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|D Chain D, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
Length = 96
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 69/95 (72%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
A+YKV L TP+G+ I PDD YILD AE+ G+DLPYSCRAG+CSTCAGK
Sbjct: 1 ASYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDED 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI AGY+LTCVAYPT D +ETHK+E +
Sbjct: 61 QSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 95
>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant
Length = 98
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 73/97 (75%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+ DQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61 SDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s
pdb|1QOA|B Chain B, Ferredoxin Mutation C49s
Length = 98
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 73/97 (75%), Gaps = 2/97 (2%)
Query: 50 ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
AT+KV LI EG + EIE PDD YILDAAE+ G DLP+SCRAG+CST AGK
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|B Chain B, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|C Chain C, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|D Chain D, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
Length = 97
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXX-XXXXXX 108
A+YKV L TP+G+ I PDD YILD AE+ G+DLPYSCRAG+CSTCAGK
Sbjct: 1 ASYKVTLKTPDGDNVITVPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQS 60
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI AGY+LTCVAYPT D +ETHK+E +
Sbjct: 61 DQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96
>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin
pdb|3B2G|B Chain B, Leptolyngbya Boryana Ferredoxin
Length = 98
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 51 TYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXX 108
++KV LI EG IE PDD YILDAAE+ GIDLPYSCRAG+CSTCAGK
Sbjct: 2 SFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQS 61
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI AGYVLTCVAYPTSD T+ TH++E++
Sbjct: 62 DQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 97
>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus
pdb|2CJN|A Chain A, Structure Of Ferredoxin, Nmr, Minimized Average Structure
pdb|2CJO|A Chain A, Structure Of Ferredoxin, Nmr, 10 Structures
Length = 97
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 50 ATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXX 108
ATYKV L+ P+G E I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK
Sbjct: 1 ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+DDQI+ G+VLTCVAYP SD + T+++EE+
Sbjct: 61 DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96
>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
pdb|3AB5|B Chain B, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
Length = 97
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Query: 52 YKVKLIT-PEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
YK++L+ EG + I+C D YILDAAE+ G+DLPYSCRAG+CSTCAGK
Sbjct: 2 YKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSD 61
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL++DQI G++LTCVAYPTSD ++TH++E +
Sbjct: 62 QSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEAL 96
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
YK L TP GE ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GK
Sbjct: 2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct: 62 FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%)
Query: 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
A Y + L T +GE++IEC +D YILDA+E ++LPYSCR GSCSTCA K
Sbjct: 1 AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
+L+++QI Y+L C YP SD +ETHK++E+
Sbjct: 61 QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95
>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense
Length = 93
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
YKV L TP+G+ + ++D + DLP SC+AG+CSTC GK
Sbjct: 2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct: 61 FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93
>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
Determined To 1.7 Angstroms Resolution
Length = 98
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 2/94 (2%)
Query: 50 ATYKVKLITPEGEQE--IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
A+Y+V+LI + + + IE ++T ILD AE+ GI+LP+SC +GSCS+C GK
Sbjct: 1 ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 141
FL+D+Q+ G+ L CV YP S+ T++TH++
Sbjct: 61 SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 94
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKXXXXXXXX 107
MA YKV L P+ ++E+ ++T +++A AGI++ C AG+C C +
Sbjct: 1 MAEYKV-LFKPD-QKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRV 58
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
L+ ++I GYVL C YP SD+ +E D ++
Sbjct: 59 ESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRLT 96
>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 65 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYV- 123
+E + YIL+AAE G D P+SCRAG+C+ CA L D++++ V
Sbjct: 40 MEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVR 99
Query: 124 LTCVAYPTSD 133
LTC+ P +D
Sbjct: 100 LTCIGSPAAD 109
>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 65 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYV- 123
+E + YIL+AAE G D P+SCRAG+C+ CA L D++++ V
Sbjct: 40 MEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVR 99
Query: 124 LTCVAYPTSD 133
LTC+ P +D
Sbjct: 100 LTCIGSPAAD 109
>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
Length = 128
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 65 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQI-DAGYV 123
+E + YIL+AAE G D P+SCRAG+C+ CA L D+++ D
Sbjct: 40 LEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVR 99
Query: 124 LTCVAYPTSD 133
LTC+ P +D
Sbjct: 100 LTCIGSPDAD 109
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 49 MATYKVKLITPEGEQEIECPDDTYIL-DAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
M+ ++V L +G C L DAA I++P CR G C TC
Sbjct: 1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDM 60
Query: 108 XXXXFLED----DQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
++ED ++ GYVL C PTSD + E+
Sbjct: 61 PEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEV 101
>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
Methylococcus Capsulatus (Bath)
Length = 98
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 52 YKVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAG--KXXXXXXXXX 108
+ + +T +GE EC D ++ AA I L SCR G C+TC
Sbjct: 5 HTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGC 64
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVE 137
L ++ + G VL C YP +D+ +E
Sbjct: 65 SVQALPPEEEEEGLVLLCRTYPKTDLEIE 93
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 65 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTC 96
E P + IL+ DA + +P SC +G+C +C
Sbjct: 249 FEIPANRSILEVLRDANVRVPSSCESGTCGSC 280
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Reduced, 2 MolASU, WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Reduced, 2 MolASU, WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of
Respiratory Complex I From Thermus Thermophilus,
Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I
From Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I
From Thermus Thermophilus
Length = 783
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 65 IECPDDTYILDAAEDAGIDLPYSCRA------GSCSTC 96
+E P T ++DA AG D+P C G+C C
Sbjct: 11 VEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMC 48
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 1 MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRG 43
++ LS MVS S + P L A P G ++ GLK + G
Sbjct: 484 LSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNG 526
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 1 MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRG 43
++ LS MVS S + P L A P G ++ GLK + G
Sbjct: 484 LSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNG 526
>pdb|2L3U|A Chain A, Solution Structure Of Domain Iv From The Ybbr Family
Protein Of Desulfitobacterium Hafniense: Northeast
Structural Genomics Consortium Target Dhr29a
Length = 98
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 44 GRVIAMATYKVKLITPEGEQEIECPDDTYILDAAED 79
G+ + T K+ P G + + PD TY L A ED
Sbjct: 54 GKAVGEHTVKIYWQLPAGIEMVSIPDVTYTLKAKED 89
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 73 ILDAAEDAGIDLPYSC-RAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGY------VLT 125
ILDAA GI++ ++C ++ +C+TC EDD +D + L+
Sbjct: 27 ILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLS 86
Query: 126 CVAYPT-SDVTVE 137
C A T D+ VE
Sbjct: 87 CQARVTDEDLVVE 99
>pdb|3GAH|A Chain A, Structure Of A F112h Variant Pduo-Type Atp:corrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Cobalamin And Atp
Length = 194
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 10 STSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEI 65
S F + +PTV + + N Q + +K + GG +A A + + IT E++I
Sbjct: 89 SFKFKQEQPTVWLEEKIDNYTQVVPAVKKHILPGGTQLASALHVARTITRRAERQI 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,685,958
Number of Sequences: 62578
Number of extensions: 122031
Number of successful extensions: 260
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 42
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)