Query 032230
Match_columns 145
No_of_seqs 269 out of 1361
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03136 Ferredoxin; Provision 100.0 2.3E-32 5E-37 203.5 13.3 145 1-145 1-148 (148)
2 CHL00134 petF ferredoxin; Vali 99.9 7.8E-27 1.7E-31 163.2 11.9 97 49-145 1-99 (99)
3 TIGR02008 fdx_plant ferredoxin 99.9 1.9E-26 4.1E-31 160.5 11.6 95 51-145 2-97 (97)
4 PTZ00038 ferredoxin; Provision 99.9 1.7E-25 3.6E-30 172.5 11.8 97 49-145 93-189 (191)
5 PRK10713 2Fe-2S ferredoxin Yfa 99.9 7.7E-23 1.7E-27 138.9 9.6 83 51-138 1-84 (84)
6 PRK10684 HCP oxidoreductase, N 99.9 6E-22 1.3E-26 163.2 10.3 106 24-137 227-332 (332)
7 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 3.1E-21 6.7E-26 159.7 11.5 115 24-138 231-351 (352)
8 PRK07609 CDP-6-deoxy-delta-3,4 99.8 1.9E-20 4E-25 154.4 11.2 90 52-143 3-94 (339)
9 cd00207 fer2 2Fe-2S iron-sulfu 99.8 4.1E-20 8.9E-25 123.5 9.4 77 61-137 8-84 (84)
10 COG0633 Fdx Ferredoxin [Energy 99.8 3.4E-20 7.3E-25 130.3 8.5 83 62-144 14-101 (102)
11 PRK11872 antC anthranilate dio 99.8 9.7E-20 2.1E-24 150.8 11.2 91 52-142 3-96 (340)
12 PLN02593 adrenodoxin-like ferr 99.8 7.7E-20 1.7E-24 131.4 7.9 91 52-142 1-104 (117)
13 PRK05713 hypothetical protein; 99.8 1.3E-19 2.8E-24 148.3 10.2 77 63-139 9-85 (312)
14 TIGR02007 fdx_isc ferredoxin, 99.8 2.8E-19 6E-24 127.1 9.3 83 59-142 13-103 (110)
15 TIGR01941 nqrF NADH:ubiquinone 99.8 3.3E-19 7.1E-24 150.8 9.9 92 49-140 27-122 (405)
16 PTZ00490 Ferredoxin superfamil 99.8 8.4E-19 1.8E-23 130.0 8.6 92 51-142 35-139 (143)
17 PRK05464 Na(+)-translocating N 99.7 7.1E-18 1.5E-22 142.9 10.1 89 51-140 35-126 (409)
18 PF00111 Fer2: 2Fe-2S iron-sul 99.7 3.8E-18 8.2E-23 113.1 6.3 69 62-131 7-78 (78)
19 COG2871 NqrF Na+-transporting 99.7 1.1E-16 2.4E-21 130.3 6.6 90 51-141 36-128 (410)
20 COG3894 Uncharacterized metal- 99.5 8.6E-15 1.9E-19 125.9 4.9 90 52-144 2-92 (614)
21 PRK07569 bidirectional hydroge 99.2 2.2E-11 4.9E-16 96.6 6.4 73 49-141 1-79 (234)
22 KOG3309 Ferredoxin [Energy pro 99.2 6.8E-11 1.5E-15 88.0 6.4 91 51-141 43-145 (159)
23 PF13510 Fer2_4: 2Fe-2S iron-s 99.2 5.4E-11 1.2E-15 80.4 4.8 69 51-140 3-81 (82)
24 PRK08166 NADH dehydrogenase su 99.0 3.7E-10 8E-15 103.6 6.7 75 52-141 2-82 (847)
25 PRK06259 succinate dehydrogena 98.8 9.4E-09 2E-13 88.9 7.3 60 63-140 23-88 (486)
26 PTZ00305 NADH:ubiquinone oxido 98.7 4.4E-08 9.4E-13 80.2 6.3 71 51-141 68-145 (297)
27 PRK12814 putative NADPH-depend 98.6 7.1E-08 1.5E-12 86.5 6.7 73 49-141 1-79 (652)
28 PRK09130 NADH dehydrogenase su 98.5 1.4E-07 3E-12 85.2 6.4 71 52-141 2-78 (687)
29 COG1034 NuoG NADH dehydrogenas 98.5 1.7E-07 3.6E-12 84.6 6.2 71 51-141 1-77 (693)
30 TIGR01973 NuoG NADH-quinone ox 98.4 3.2E-07 7E-12 81.5 5.6 64 63-141 6-75 (603)
31 PRK09129 NADH dehydrogenase su 98.4 6.2E-07 1.3E-11 81.7 5.9 70 52-141 2-77 (776)
32 PRK08493 NADH dehydrogenase su 98.4 7.9E-07 1.7E-11 81.7 6.6 68 52-141 2-75 (819)
33 PRK13552 frdB fumarate reducta 98.3 7.6E-07 1.7E-11 71.1 4.7 57 63-137 26-92 (239)
34 PF13085 Fer2_3: 2Fe-2S iron-s 98.3 7.4E-07 1.6E-11 63.5 4.0 53 62-132 20-78 (110)
35 PRK07860 NADH dehydrogenase su 98.3 1.4E-06 3E-11 79.9 6.7 69 51-139 4-78 (797)
36 PRK08640 sdhB succinate dehydr 98.3 1.1E-06 2.4E-11 70.6 4.8 57 63-137 25-97 (249)
37 PRK11433 aldehyde oxidoreducta 98.2 7.7E-06 1.7E-10 64.6 8.0 50 52-104 52-103 (217)
38 PRK12577 succinate dehydrogena 98.2 5.4E-06 1.2E-10 69.0 7.3 39 62-100 20-64 (329)
39 PRK12386 fumarate reductase ir 98.2 3.5E-06 7.7E-11 67.9 5.8 39 62-100 21-65 (251)
40 PRK12385 fumarate reductase ir 98.1 2.6E-06 5.6E-11 68.3 4.0 38 63-100 27-70 (244)
41 PRK07570 succinate dehydrogena 98.1 3.8E-06 8.3E-11 67.6 5.0 56 63-130 22-88 (250)
42 PRK09908 xanthine dehydrogenas 98.1 8.7E-06 1.9E-10 61.5 6.3 51 51-104 8-59 (159)
43 COG3383 Uncharacterized anaero 98.0 1.7E-05 3.7E-10 72.1 6.5 67 51-139 5-77 (978)
44 PRK12576 succinate dehydrogena 98.0 2.7E-05 5.8E-10 63.6 7.1 41 62-103 26-72 (279)
45 TIGR00384 dhsB succinate dehyd 97.9 6.3E-06 1.4E-10 64.8 2.8 41 62-103 16-62 (220)
46 PRK12575 succinate dehydrogena 97.9 2E-05 4.3E-10 62.9 5.6 55 65-137 27-90 (235)
47 PLN00129 succinate dehydrogena 97.9 1.6E-05 3.5E-10 64.9 4.9 50 64-131 63-121 (276)
48 TIGR03193 4hydroxCoAred 4-hydr 97.9 3.4E-05 7.4E-10 57.7 5.7 49 53-104 3-53 (148)
49 COG0479 FrdB Succinate dehydro 97.8 4.6E-05 9.9E-10 60.9 6.3 38 63-100 22-65 (234)
50 PRK05950 sdhB succinate dehydr 97.7 3.8E-05 8.2E-10 60.9 4.2 42 62-104 19-67 (232)
51 TIGR03198 pucE xanthine dehydr 97.5 0.00023 5.1E-09 53.3 5.6 50 52-104 4-55 (151)
52 COG2080 CoxS Aerobic-type carb 97.5 0.00032 7E-09 52.8 6.0 51 51-104 3-55 (156)
53 TIGR02963 xanthine_xdhA xanthi 96.9 0.0012 2.6E-08 57.5 4.8 45 54-100 3-50 (467)
54 PRK09800 putative hypoxanthine 96.8 0.0023 5E-08 60.2 6.0 50 52-104 3-54 (956)
55 TIGR03311 Se_dep_Molyb_1 selen 96.7 0.0034 7.3E-08 58.4 5.9 47 53-104 2-50 (848)
56 TIGR03313 Se_sel_red_Mo probab 96.3 0.006 1.3E-07 57.4 5.0 43 61-104 6-50 (951)
57 PLN00192 aldehyde oxidase 96.2 0.0089 1.9E-07 58.2 6.0 47 52-100 6-55 (1344)
58 TIGR02969 mam_aldehyde_ox alde 95.9 0.012 2.6E-07 57.2 4.9 37 65-101 15-53 (1330)
59 KOG2282 NADH-ubiquinone oxidor 95.8 0.016 3.6E-07 51.2 5.0 40 63-102 40-85 (708)
60 TIGR01372 soxA sarcosine oxida 94.5 0.17 3.7E-06 47.8 8.2 73 50-139 11-94 (985)
61 KOG3049 Succinate dehydrogenas 92.9 0.38 8.3E-06 38.4 6.2 46 70-133 76-127 (288)
62 COG4630 XdhA Xanthine dehydrog 92.4 0.3 6.5E-06 42.0 5.4 49 52-100 7-58 (493)
63 PLN02906 xanthine dehydrogenas 90.5 0.29 6.3E-06 47.8 3.8 32 70-101 1-33 (1319)
64 COG1018 Hmp Flavodoxin reducta 88.7 0.33 7.1E-06 39.4 2.3 57 13-78 207-266 (266)
65 PRK00054 dihydroorotate dehydr 88.1 0.31 6.7E-06 38.4 1.8 31 72-102 195-231 (250)
66 cd06219 DHOD_e_trans_like1 FAD 87.5 0.42 9E-06 37.7 2.2 30 73-103 195-230 (248)
67 cd06218 DHOD_e_trans FAD/NAD b 87.2 0.6 1.3E-05 36.8 3.0 31 72-102 194-230 (246)
68 PRK08364 sulfur carrier protei 84.9 3.2 7E-05 26.6 5.1 36 49-84 2-37 (70)
69 KOG0430 Xanthine dehydrogenase 84.7 1.5 3.2E-05 42.4 4.6 36 67-102 17-54 (1257)
70 PRK08345 cytochrome-c3 hydroge 84.1 0.58 1.2E-05 37.9 1.5 33 71-103 225-266 (289)
71 cd06220 DHOD_e_trans_like2 FAD 81.8 1.3 2.8E-05 34.5 2.6 31 71-101 180-216 (233)
72 PF10418 DHODB_Fe-S_bind: Iron 80.9 0.94 2E-05 26.4 1.2 18 86-103 4-21 (40)
73 PRK06222 ferredoxin-NADP(+) re 78.6 1.6 3.5E-05 35.1 2.3 28 73-100 196-229 (281)
74 cd06221 sulfite_reductase_like 77.8 1.5 3.2E-05 34.7 1.9 29 71-99 203-240 (253)
75 PRK05659 sulfur carrier protei 72.6 8 0.00017 24.1 3.9 28 53-84 2-29 (66)
76 PRK08221 anaerobic sulfite red 71.5 2.9 6.2E-05 33.4 2.0 28 72-99 206-242 (263)
77 cd01760 RBD Ubiquitin-like dom 71.4 8.6 0.00019 25.1 3.9 22 59-80 7-29 (72)
78 PRK05802 hypothetical protein; 71.1 2.8 6.1E-05 34.7 1.9 28 73-100 269-304 (320)
79 PRK12778 putative bifunctional 68.9 4.5 9.8E-05 37.1 2.9 28 73-100 196-229 (752)
80 PF03658 Ub-RnfH: RnfH family 67.8 11 0.00023 25.6 3.9 32 52-83 3-36 (84)
81 PRK01777 hypothetical protein; 67.5 21 0.00047 24.5 5.5 34 52-85 6-41 (95)
82 TIGR02911 sulfite_red_B sulfit 66.7 2.5 5.4E-05 33.7 0.7 27 73-99 205-240 (261)
83 PRK07440 hypothetical protein; 64.9 18 0.00038 23.3 4.4 29 52-84 5-33 (70)
84 cd06192 DHOD_e_trans_like FAD/ 63.7 4.2 9.1E-05 31.7 1.5 16 85-100 213-228 (243)
85 smart00455 RBD Raf-like Ras-bi 60.2 22 0.00048 22.9 4.2 21 59-79 7-28 (70)
86 PRK05863 sulfur carrier protei 60.0 23 0.0005 22.2 4.2 29 53-85 2-30 (65)
87 PRK06083 sulfur carrier protei 56.2 27 0.00059 23.4 4.2 31 49-83 16-46 (84)
88 COG2104 ThiS Sulfur transfer p 53.7 35 0.00075 22.0 4.3 29 52-84 3-31 (68)
89 PRK12779 putative bifunctional 52.3 14 0.00029 35.3 3.0 28 73-100 862-895 (944)
90 PRK06944 sulfur carrier protei 51.9 30 0.00066 21.2 3.8 27 53-83 2-28 (65)
91 PRK12775 putative trifunctiona 51.6 12 0.00027 35.8 2.7 28 73-100 196-229 (1006)
92 PRK06437 hypothetical protein; 50.8 40 0.00087 21.3 4.2 23 62-84 12-34 (67)
93 cd01816 Raf_RBD Ubiquitin doma 48.8 31 0.00067 22.9 3.5 35 59-102 7-46 (74)
94 PRK08053 sulfur carrier protei 46.8 51 0.0011 20.6 4.2 28 53-84 2-29 (66)
95 PRK06567 putative bifunctional 45.5 8.7 0.00019 37.0 0.6 19 84-103 970-989 (1028)
96 PF02196 RBD: Raf-like Ras-bin 45.3 51 0.0011 21.2 4.1 37 59-102 8-47 (71)
97 PF02824 TGS: TGS domain; Int 43.6 37 0.0008 21.0 3.1 33 53-88 2-34 (60)
98 PF10531 SLBB: SLBB domain; I 41.5 24 0.00051 21.6 2.0 23 64-86 13-35 (59)
99 PF03990 DUF348: Domain of unk 36.7 84 0.0018 18.0 3.9 17 68-84 15-31 (43)
100 PF11543 UN_NPL4: Nuclear pore 34.3 87 0.0019 20.6 4.0 28 51-78 4-31 (80)
101 cd00565 ThiS ThiaminS ubiquiti 32.2 93 0.002 19.1 3.7 22 63-84 7-28 (65)
102 PF01476 LysM: LysM domain; I 31.6 46 0.00099 18.4 2.0 19 66-84 2-20 (44)
103 PF04225 OapA: Opacity-associa 31.5 48 0.001 22.1 2.4 22 63-84 3-24 (85)
104 PF09012 FeoC: FeoC like trans 31.5 20 0.00043 22.7 0.5 27 71-98 32-62 (69)
105 PRK06549 acetyl-CoA carboxylas 30.9 42 0.0009 24.4 2.1 20 48-69 1-20 (130)
106 TIGR01683 thiS thiamine biosyn 30.5 82 0.0018 19.4 3.2 21 63-83 6-26 (64)
107 cd00118 LysM Lysin domain, fou 30.4 53 0.0012 17.0 2.1 21 64-84 2-22 (46)
108 cd01818 TIAM1_RBD Ubiquitin do 30.0 94 0.002 20.7 3.5 21 59-79 7-28 (77)
109 PRK07696 sulfur carrier protei 29.5 1.3E+02 0.0027 18.9 4.0 28 53-84 2-30 (67)
110 cd01813 UBP_N UBP ubiquitin pr 28.5 93 0.002 19.9 3.3 24 53-76 2-25 (74)
111 cd01817 RGS12_RBD Ubiquitin do 28.2 1.2E+02 0.0026 20.0 3.7 37 59-104 7-48 (73)
112 TIGR02899 spore_safA spore coa 27.8 43 0.00093 18.1 1.5 18 67-84 1-18 (44)
113 COG2914 Uncharacterized protei 25.6 2E+02 0.0044 20.1 4.6 32 52-83 6-39 (99)
114 PF11470 TUG-UBL1: GLUT4 regul 24.7 1.1E+02 0.0025 19.4 3.1 19 62-80 8-26 (65)
115 cd01812 BAG1_N Ubiquitin-like 24.1 1.3E+02 0.0027 18.4 3.3 26 53-78 2-27 (71)
116 cd01995 ExsB ExsB is a transcr 23.6 64 0.0014 23.4 2.1 28 70-97 126-158 (169)
117 TIGR00364 exsB protein. This p 23.2 65 0.0014 24.3 2.1 26 72-97 163-196 (201)
118 COG3061 OapA Cell envelope opa 23.0 79 0.0017 25.4 2.5 24 62-85 159-182 (242)
119 COG4070 Predicted peptidyl-pro 21.7 1.2E+02 0.0025 26.7 3.4 30 53-86 3-32 (512)
120 PRK11106 queuosine biosynthesi 21.3 77 0.0017 25.2 2.2 26 72-97 167-201 (231)
121 TIGR01877 cas_cas6 CRISPR-asso 21.2 1.2E+02 0.0026 22.2 3.2 31 63-93 167-198 (199)
122 cd01791 Ubl5 UBL5 ubiquitin-li 21.0 2.3E+02 0.005 18.0 4.1 34 52-85 2-40 (73)
123 cd01808 hPLIC_N Ubiquitin-like 20.9 2E+02 0.0042 17.8 3.7 24 53-76 2-25 (71)
124 PF14451 Ub-Mut7C: Mut7-C ubiq 20.3 2.2E+02 0.0048 18.8 4.0 23 63-85 25-47 (81)
125 smart00257 LysM Lysin motif. 20.1 1.4E+02 0.0029 15.0 2.5 20 65-84 2-21 (44)
No 1
>PLN03136 Ferredoxin; Provisional
Probab=100.00 E-value=2.3e-32 Score=203.51 Aligned_cols=145 Identities=72% Similarity=1.163 Sum_probs=125.3
Q ss_pred Cccc--ccCccccceeccCCccccccCCCCce-eeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHH
Q 032230 1 MAAL--SSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAA 77 (145)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal 77 (145)
||+. ++++.+++|...++++++++++.+.- .-+||.+....++|+++.|..++|+|..+++.++|++++|++|||++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~V~l~~~~~~~~~~~~~g~tILdAa 80 (148)
T PLN03136 1 MASTALSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA 80 (148)
T ss_pred CcchhhhhhhhhhhcccccccccccccccccccccccccccccccCcccceeeeEEEEEecCCCcEEEEeCCCCcHHHHH
Confidence 5555 66667777887777788887775443 66889887545567888899999999756665789999999999999
Q ss_pred HHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEEEeCCCCCCC
Q 032230 78 EDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145 (145)
Q Consensus 78 ~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~~e~~l~ 145 (145)
+++||++||+|+.|.||+|++++++|.+++.+...|++++.++||+|+||+++.+|++|++++|++|.
T Consensus 81 ~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~~l~ 148 (148)
T PLN03136 81 EEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAIM 148 (148)
T ss_pred HHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECCCcEEecCChhhcC
Confidence 99999999999999999999999999999887778999999999999999999999999999999874
No 2
>CHL00134 petF ferredoxin; Validated
Probab=99.95 E-value=7.8e-27 Score=163.17 Aligned_cols=97 Identities=70% Similarity=1.196 Sum_probs=87.6
Q ss_pred eeeeEEEEEC--CCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeE
Q 032230 49 MATYKVKLIT--PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTC 126 (145)
Q Consensus 49 m~~~~Vti~~--~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaC 126 (145)
|+.|+|+|.. .+..+.|++++|+|||++|+++||++||+|+.|.||+|++++++|.+++.+...|+.++.++||+|+|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C 80 (99)
T CHL00134 1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC 80 (99)
T ss_pred CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEe
Confidence 5668999953 23356799999999999999999999999999999999999999999887666789888999999999
Q ss_pred EeEECCCeEEEeCCCCCCC
Q 032230 127 VAYPTSDVTVETHKDEEMS 145 (145)
Q Consensus 127 q~~~~~dl~I~~~~e~~l~ 145 (145)
|++|.+|++|++++++++|
T Consensus 81 ~~~~~~d~~i~~~~~~~~~ 99 (99)
T CHL00134 81 VAYPTSDCTILTHQEEELY 99 (99)
T ss_pred eCEECCCeEEEeccccccC
Confidence 9999999999999999987
No 3
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.94 E-value=1.9e-26 Score=160.53 Aligned_cols=95 Identities=77% Similarity=1.329 Sum_probs=86.0
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY 129 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~ 129 (145)
.++|+|..+++ .++|.+++|+||||+++++|+++|++|++|.||+|+++|++|.+++.+...|+++++++||+|+||++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~ 81 (97)
T TIGR02008 2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAY 81 (97)
T ss_pred eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCE
Confidence 46788853443 57899999999999999999999999999999999999999999887666788888999999999999
Q ss_pred ECCCeEEEeCCCCCCC
Q 032230 130 PTSDVTVETHKDEEMS 145 (145)
Q Consensus 130 ~~~dl~I~~~~e~~l~ 145 (145)
+.+|++|++++++++|
T Consensus 82 ~~~di~v~~~~~~~~~ 97 (97)
T TIGR02008 82 PTSDCTIETHKEEDLY 97 (97)
T ss_pred ECCCeEEEeccccccC
Confidence 9999999999999987
No 4
>PTZ00038 ferredoxin; Provisional
Probab=99.93 E-value=1.7e-25 Score=172.47 Aligned_cols=97 Identities=56% Similarity=1.072 Sum_probs=88.9
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA 128 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~ 128 (145)
+..|+|+|..+++.+++++++|+||||+++++||++|+.|+.|.||+|++++++|++++.+...|+++++++||+|+||+
T Consensus 93 ~~~~~Vt~~~~~g~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa 172 (191)
T PTZ00038 93 PLFYNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTC 172 (191)
T ss_pred CceEEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeC
Confidence 34688998645556789999999999999999999999999999999999999999998888889999999999999999
Q ss_pred EECCCeEEEeCCCCCCC
Q 032230 129 YPTSDVTVETHKDEEMS 145 (145)
Q Consensus 129 ~~~~dl~I~~~~e~~l~ 145 (145)
++.+|++|+++++++++
T Consensus 173 ~p~sDi~Ie~p~e~~~~ 189 (191)
T PTZ00038 173 YPKSDCTIETHKEDELH 189 (191)
T ss_pred EECCCeEEecCChHHhc
Confidence 99999999999998764
No 5
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.89 E-value=7.7e-23 Score=138.94 Aligned_cols=83 Identities=29% Similarity=0.586 Sum_probs=69.9
Q ss_pred eeEEEEECCCCeEEEEecC-CCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230 51 TYKVKLITPEGEQEIECPD-DTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY 129 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~-g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~ 129 (145)
|++|+|. +.+ +.|++.+ ++|||++++++|+++||+|+.|.||+|++++++|++++.+.. ..+.++|++|+||++
T Consensus 1 ~~~v~~~-~~~-~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~~ 75 (84)
T PRK10713 1 MARVTLR-ITG-TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCCR 75 (84)
T ss_pred CCEEEEE-eCC-cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeCE
Confidence 3567775 343 6799986 599999999999999999999999999999999999875432 235678999999999
Q ss_pred ECCCeEEEe
Q 032230 130 PTSDVTVET 138 (145)
Q Consensus 130 ~~~dl~I~~ 138 (145)
|.+|++|++
T Consensus 76 p~sd~~ie~ 84 (84)
T PRK10713 76 AKGDIEIEM 84 (84)
T ss_pred ECCCEEEeC
Confidence 999999874
No 6
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.87 E-value=6e-22 Score=163.22 Aligned_cols=106 Identities=26% Similarity=0.415 Sum_probs=89.9
Q ss_pred cCCCCceeeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeC
Q 032230 24 KAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSG 103 (145)
Q Consensus 24 ~~~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G 103 (145)
.+.++||.|.|++...... ...++|++.. .++++.+++|+|||++++++|+++|++|+.|.||+|++++++|
T Consensus 227 v~~~~i~~E~F~~~~~~~~------~~~~~v~~~~--~~~~~~~~~~~~lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G 298 (332)
T PRK10684 227 VTADRFFKEKFFTPVAEAA------TSGLTFTKLQ--PAREFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSG 298 (332)
T ss_pred CCHHHeEeeccCCCCCCcC------CCceEEEEec--CCEEEEeCCCChHHHHHHHcCCCccCCCCCcCCCCCEEEEecC
Confidence 4568999999987532111 2246788864 3468999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCChhcccCCeEEeEEeEECCCeEEE
Q 032230 104 SVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVE 137 (145)
Q Consensus 104 ~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~ 137 (145)
.+++.....|+++++++|++|+||+++.+|++|+
T Consensus 299 ~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~ 332 (332)
T PRK10684 299 EYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332 (332)
T ss_pred cccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence 9998766779999999999999999999998873
No 7
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.86 E-value=3.1e-21 Score=159.70 Aligned_cols=115 Identities=37% Similarity=0.553 Sum_probs=89.0
Q ss_pred cCCCCceeeeeccccCCCCCCcc----cceeeeEEEEECCCCeEE-EEecCCCcHHHHHHHcCCCCCCCCCCccccCCeE
Q 032230 24 KAMPNMGQALFGLKANNNRGGRV----IAMATYKVKLITPEGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAG 98 (145)
Q Consensus 24 ~~~~~~~~e~F~~~~~~~~~~~~----~~m~~~~Vti~~~~~~~~-~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v 98 (145)
.+..+||.|.|++..++...+.. .....++|+|...+...+ +.+++|+|||++++++|++++|+|+.|.||+|++
T Consensus 231 v~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~~G~Cg~C~~ 310 (352)
T TIGR02160 231 VPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVTLDGRSTETSSLSRDESVLDAALRARPDLPFACKGGVCGTCRA 310 (352)
T ss_pred CCHHHEEEEeccCCCCCcccccccccccCCCceEEEEEECCceEEEEecCCCCcHHHHHHHcCCCCcCCCCCccCCCCEE
Confidence 45679999999974311100110 012346788764333332 5689999999999999999999999999999999
Q ss_pred EEEeCCccCCCCCCCChhcccCCeEEeEEeEECCC-eEEEe
Q 032230 99 KVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSD-VTVET 138 (145)
Q Consensus 99 ~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~ 138 (145)
++++|.+++.+...|++++.++|++|+||+++.+| ++|++
T Consensus 311 ~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~ 351 (352)
T TIGR02160 311 KVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY 351 (352)
T ss_pred EEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence 99999999877667898899999999999999987 77764
No 8
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.84 E-value=1.9e-20 Score=154.35 Aligned_cols=90 Identities=38% Similarity=0.729 Sum_probs=80.9
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCC--CCCCCChhcccCCeEEeEEeE
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVLTCVAY 129 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq~~ 129 (145)
++|+|. +. ++++++++|+||||+++++|++++++|+.|.||+|++++++|.+++. +...|++++.++|++|+||++
T Consensus 3 ~~v~~~-~~-~~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~ 80 (339)
T PRK07609 3 FQVTLQ-PS-GRQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAK 80 (339)
T ss_pred EEEEEe-cC-CeEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCE
Confidence 578886 34 46899999999999999999999999999999999999999999875 566788888999999999999
Q ss_pred ECCCeEEEeCCCCC
Q 032230 130 PTSDVTVETHKDEE 143 (145)
Q Consensus 130 ~~~dl~I~~~~e~~ 143 (145)
+.+|++|+++...+
T Consensus 81 ~~~d~~i~~~~~~~ 94 (339)
T PRK07609 81 PLSDLVLEAREVPA 94 (339)
T ss_pred ECCCEEEEeccccc
Confidence 99999999987654
No 9
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.83 E-value=4.1e-20 Score=123.54 Aligned_cols=77 Identities=49% Similarity=0.931 Sum_probs=70.2
Q ss_pred CeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEEE
Q 032230 61 GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVE 137 (145)
Q Consensus 61 ~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~ 137 (145)
.++++++++|+|||++++++|+++++.|+.|.||+|+++|.+|.+.+.....+...+..+++||+||+++.+|++|+
T Consensus 8 ~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~ 84 (84)
T cd00207 8 SGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84 (84)
T ss_pred CCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence 45789999999999999999999999999999999999999999988766667777788999999999999999874
No 10
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.82 E-value=3.4e-20 Score=130.33 Aligned_cols=83 Identities=28% Similarity=0.585 Sum_probs=66.2
Q ss_pred eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeC--CccCCC---CCCCChhcccCCeEEeEEeEECCCeEE
Q 032230 62 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSG--SVDQSD---GSFLEDDQIDAGYVLTCVAYPTSDVTV 136 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G--~~~~~e---~~~L~~~~~~~g~rLaCq~~~~~dl~I 136 (145)
...+.++.|+|||++++++||+++|+|+.|.||+|+|+|++| .+.+.+ ..+|.+.....++||+||+++.+|+.|
T Consensus 14 ~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i 93 (102)
T COG0633 14 DVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDI 93 (102)
T ss_pred ceEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcce
Confidence 344555669999999999999999999999999999999999 665542 234544456677999999999999988
Q ss_pred EeCCCCCC
Q 032230 137 ETHKDEEM 144 (145)
Q Consensus 137 ~~~~e~~l 144 (145)
++....+.
T Consensus 94 ~~~~~~~~ 101 (102)
T COG0633 94 EVVEEPEY 101 (102)
T ss_pred EEEeccCC
Confidence 76655443
No 11
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.82 E-value=9.7e-20 Score=150.85 Aligned_cols=91 Identities=33% Similarity=0.513 Sum_probs=76.7
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccC--CCCCCCChhcccCCeEEeEEe
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ--SDGSFLEDDQIDAGYVLTCVA 128 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq~ 128 (145)
++|+|..+++ ...|++++|+||||+++++|+.+|++|+.|.||+|++++++|.++. .+...|++++.++|++|+||+
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~ 82 (340)
T PRK11872 3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQT 82 (340)
T ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeC
Confidence 4555531223 4568899999999999999999999999999999999999999875 345568888889999999999
Q ss_pred EECCCeEEEeCCCC
Q 032230 129 YPTSDVTVETHKDE 142 (145)
Q Consensus 129 ~~~~dl~I~~~~e~ 142 (145)
++.+|++|+++.+.
T Consensus 83 ~~~~d~~i~~~~~~ 96 (340)
T PRK11872 83 RVKSDAAFYFDFDS 96 (340)
T ss_pred EECCceEEEecCcc
Confidence 99999999987654
No 12
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.81 E-value=7.7e-20 Score=131.45 Aligned_cols=91 Identities=21% Similarity=0.398 Sum_probs=73.1
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCcc-------CCCCCCCC-hhcccCC
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVD-------QSDGSFLE-DDQIDAG 121 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~-------~~e~~~L~-~~~~~~g 121 (145)
++|+|..++| .+++.+..|+|||++++++|+++++.|+ .|.||+|+|+|+++... ..|...|+ ..+..++
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 3688865665 5789999999999999999999999999 79999999999654321 12344566 4567789
Q ss_pred eEEeEEeEEC---CCeEEEeCCCC
Q 032230 122 YVLTCVAYPT---SDVTVETHKDE 142 (145)
Q Consensus 122 ~rLaCq~~~~---~dl~I~~~~e~ 142 (145)
+||+||+.+. .+++|++++++
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~ 104 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAAT 104 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchh
Confidence 9999999998 46999998765
No 13
>PRK05713 hypothetical protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=148.31 Aligned_cols=77 Identities=31% Similarity=0.637 Sum_probs=71.9
Q ss_pred EEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEEEeC
Q 032230 63 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETH 139 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~ 139 (145)
++|++++|+||||+++++||.+|++|+.|.||+|++++++|.++......|++++.++|+||+||+++.+|++|+++
T Consensus 9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~ 85 (312)
T PRK05713 9 RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVF 85 (312)
T ss_pred eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEec
Confidence 68999999999999999999999999999999999999999987655567888889999999999999999999986
No 14
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.80 E-value=2.8e-19 Score=127.10 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=67.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCC-----CCCChh-cccCCeEEeEEeEEC
Q 032230 59 PEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDG-----SFLEDD-QIDAGYVLTCVAYPT 131 (145)
Q Consensus 59 ~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~-----~~L~~~-~~~~g~rLaCq~~~~ 131 (145)
+. +++|++.+|+|||++++++|+++++.|+ .|.||+|+|+|.+|....... ..|+.. +..++|||+||+++.
T Consensus 13 p~-~~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~~ 91 (110)
T TIGR02007 13 PE-GAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVVA 91 (110)
T ss_pred CC-CeEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEEc
Confidence 44 4689999999999999999999999999 799999999999997544322 223221 346789999999988
Q ss_pred -CCeEEEeCCCC
Q 032230 132 -SDVTVETHKDE 142 (145)
Q Consensus 132 -~dl~I~~~~e~ 142 (145)
+|++|+++..+
T Consensus 92 ~~dl~v~~~~~~ 103 (110)
T TIGR02007 92 DEDLVVEIPKYT 103 (110)
T ss_pred CCCEEEEECchh
Confidence 59999998654
No 15
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.79 E-value=3.3e-19 Score=150.84 Aligned_cols=92 Identities=21% Similarity=0.449 Sum_probs=79.3
Q ss_pred eeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC--CCCCCChhcccCCeEE
Q 032230 49 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVL 124 (145)
Q Consensus 49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rL 124 (145)
|.+++|++..+++ ++++++++|+|||++++++|+++++.|+ .|.||+|+|++++|.+... +...|++++.++|+||
T Consensus 27 ~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rL 106 (405)
T TIGR01941 27 VSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL 106 (405)
T ss_pred cccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEE
Confidence 5666777664443 5789999999999999999999999999 6999999999999987643 4467888889999999
Q ss_pred eEEeEECCCeEEEeCC
Q 032230 125 TCVAYPTSDVTVETHK 140 (145)
Q Consensus 125 aCq~~~~~dl~I~~~~ 140 (145)
+||+.+.+|++|+++.
T Consensus 107 aCq~~~~~d~~i~~~~ 122 (405)
T TIGR01941 107 SCQVKVKQDMSIEIPE 122 (405)
T ss_pred EeeCEECCCEEEEECc
Confidence 9999999999999874
No 16
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.78 E-value=8.4e-19 Score=129.99 Aligned_cols=92 Identities=21% Similarity=0.346 Sum_probs=76.7
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHc-CCCCCCCCC-CccccCCeEEEEeCCccC------CCCCCCChh-cccC
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDA-GIDLPYSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLEDD-QIDA 120 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~-Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~~ 120 (145)
.++|+|+.++| .+++++++|+|||+++.++ ++.|+..|+ .|.||+|+|+|.+|..+. .|...|+.. +..+
T Consensus 35 ~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~ 114 (143)
T PTZ00490 35 KVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE 114 (143)
T ss_pred cEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCC
Confidence 47899987666 5789999999999999995 799999999 999999999999875332 244567765 6789
Q ss_pred CeEEeEEeEECC---CeEEEeCCCC
Q 032230 121 GYVLTCVAYPTS---DVTVETHKDE 142 (145)
Q Consensus 121 g~rLaCq~~~~~---dl~I~~~~e~ 142 (145)
++||+||..+.. +++|++++++
T Consensus 115 gsRLaCQi~v~~~ldgl~V~vp~~~ 139 (143)
T PTZ00490 115 TSRLACQVDLTPEMDGLEVELPSYV 139 (143)
T ss_pred CcEEeeeEEEecCCCCEEEEeCccc
Confidence 999999999985 5699998764
No 17
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.74 E-value=7.1e-18 Score=142.87 Aligned_cols=89 Identities=27% Similarity=0.464 Sum_probs=75.9
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC--CCCCCChhcccCCeEEeEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVLTCV 127 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq 127 (145)
.++|++. ++..+++++++|+||||+++++|+++++.|+ +|.||+|+|++++|.+... +...|++++.++|+||+||
T Consensus 35 ~~~i~~~-~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq 113 (409)
T PRK05464 35 DVTIKIN-GDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQ 113 (409)
T ss_pred cEEEEEc-CCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEee
Confidence 3566663 2224789999999999999999999999999 6999999999999987653 4556888888999999999
Q ss_pred eEECCCeEEEeCC
Q 032230 128 AYPTSDVTVETHK 140 (145)
Q Consensus 128 ~~~~~dl~I~~~~ 140 (145)
+++.+|++|+++.
T Consensus 114 ~~~~~d~~ie~~~ 126 (409)
T PRK05464 114 VKVKQDMKIEVPE 126 (409)
T ss_pred CEECCCEEEEECc
Confidence 9999999999874
No 18
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.74 E-value=3.8e-18 Score=113.14 Aligned_cols=69 Identities=43% Similarity=0.801 Sum_probs=59.4
Q ss_pred eEEEEecCCCc-HHHHHHHc-CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCe-EEeEEeEEC
Q 032230 62 EQEIECPDDTY-ILDAAEDA-GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY-VLTCVAYPT 131 (145)
Q Consensus 62 ~~~~~v~~g~t-LLeal~~~-Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~-rLaCq~~~~ 131 (145)
.++|++++|+| ||++++++ |++++|.|+.|.||+|+|+|++|++ +.....++.++..+++ ||+||++|+
T Consensus 7 ~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 7 GVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp EEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred EEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 57899999999 99999999 9999999998889999999999999 4345566666666665 799999874
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.66 E-value=1.1e-16 Score=130.33 Aligned_cols=90 Identities=22% Similarity=0.449 Sum_probs=78.8
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccC--CCCCCCChhcccCCeEEeEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQ--SDGSFLEDDQIDAGYVLTCV 127 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq 127 (145)
..+|+|+ .+.++++.++.|.+||.+|..+||.|++.|| .|.||.|+|+|.+|.-+. .|...++.++.++||||+||
T Consensus 36 d~ti~IN-~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ 114 (410)
T COG2871 36 DITIKIN-GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQ 114 (410)
T ss_pred ceEEEeC-CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEE
Confidence 3677775 3346789999999999999999999999999 999999999999987654 35667888899999999999
Q ss_pred eEECCCeEEEeCCC
Q 032230 128 AYPTSDVTVETHKD 141 (145)
Q Consensus 128 ~~~~~dl~I~~~~e 141 (145)
+.+..|+.|+++++
T Consensus 115 ~~Vk~dm~levpEe 128 (410)
T COG2871 115 VNVKHDMDLEVPEE 128 (410)
T ss_pred ecccccceeechHH
Confidence 99999999999864
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.52 E-value=8.6e-15 Score=125.89 Aligned_cols=90 Identities=27% Similarity=0.425 Sum_probs=72.4
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP 130 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 130 (145)
+-|+|. |.|+ ..+ ++|+|||+++++.|+.|.+.|| .|+||+|+|.|.+|.....+...-..-.++.||||+||+++
T Consensus 2 p~v~f~-psgk-r~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v 78 (614)
T COG3894 2 PLVTFM-PSGK-RGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQV 78 (614)
T ss_pred ceeEee-cCCC-cCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhh
Confidence 568886 6664 466 9999999999999999999999 99999999999999854321111122224569999999999
Q ss_pred CCCeEEEeCCCCCC
Q 032230 131 TSDVTVETHKDEEM 144 (145)
Q Consensus 131 ~~dl~I~~~~e~~l 144 (145)
.+|++|.+|++..|
T Consensus 79 ~gd~~i~ip~es~l 92 (614)
T COG3894 79 LGDLVIFIPPESRL 92 (614)
T ss_pred cCceEEEcCchhhH
Confidence 99999999998754
No 21
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.22 E-value=2.2e-11 Score=96.55 Aligned_cols=73 Identities=26% Similarity=0.552 Sum_probs=61.5
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCe
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY 122 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~ 122 (145)
|++++|+| +| ++|++++|+|||++++++|+.||+.|. .|.|+.|+|+| +|. .+.
T Consensus 1 m~~v~i~i---dg-~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~ 60 (234)
T PRK07569 1 MSVKTLTI---DD-QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKL 60 (234)
T ss_pred CceEEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------Ccc
Confidence 55677877 34 579999999999999999999999998 89999999998 331 245
Q ss_pred EEeEEeEECCCeEEEeCCC
Q 032230 123 VLTCVAYPTSDVTVETHKD 141 (145)
Q Consensus 123 rLaCq~~~~~dl~I~~~~e 141 (145)
+.||++.+..+|+|.+..+
T Consensus 61 ~~aC~t~v~~Gm~v~t~~~ 79 (234)
T PRK07569 61 LPACVTPVAEGMVVQTNTP 79 (234)
T ss_pred ccCcCCCCCCCCEEEECCH
Confidence 6799999999999988754
No 22
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.17 E-value=6.8e-11 Score=87.99 Aligned_cols=91 Identities=24% Similarity=0.395 Sum_probs=72.0
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccC------CCCCCCCh-hcccCC
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLED-DQIDAG 121 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~~g 121 (145)
.++|+|..++| ++.+....|+|||+++.++||.++..|. .-.|.+|+|.|..-..+. .|..+|+. -.+.+.
T Consensus 43 ~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t 122 (159)
T KOG3309|consen 43 DIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET 122 (159)
T ss_pred eEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence 48999998887 6668889999999999999999999999 999999999997654332 23334432 225678
Q ss_pred eEEeEEeEECCC---eEEEeCCC
Q 032230 122 YVLTCVAYPTSD---VTVETHKD 141 (145)
Q Consensus 122 ~rLaCq~~~~~d---l~I~~~~e 141 (145)
.||.||.....+ ++|.+|..
T Consensus 123 SRLGCQI~l~keldG~~v~vP~a 145 (159)
T KOG3309|consen 123 SRLGCQIVLTKELDGMRVAVPEA 145 (159)
T ss_pred cccceEEEeccccCCcEEECccc
Confidence 999999998754 78888864
No 23
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.15 E-value=5.4e-11 Score=80.39 Aligned_cols=69 Identities=33% Similarity=0.582 Sum_probs=47.3
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCC----------ccccCCeEEEEeCCccCCCCCCCChhcccC
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRA----------GSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~----------G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~ 120 (145)
+++|+| +| +++++.+|+|||++++++|+.||+.|.. |.|+.|.|+|- | .
T Consensus 3 ~v~i~i---dG-~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~ 61 (82)
T PF13510_consen 3 MVTITI---DG-KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------E 61 (82)
T ss_dssp EEEEEE---TT-EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------E
T ss_pred EEEEEE---CC-EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------C
Confidence 466777 34 6899999999999999999999999986 99999999982 1 1
Q ss_pred CeEEeEEeEECCCeEEEeCC
Q 032230 121 GYVLTCVAYPTSDVTVETHK 140 (145)
Q Consensus 121 g~rLaCq~~~~~dl~I~~~~ 140 (145)
..+.||++.+..+|+|+...
T Consensus 62 ~~v~AC~t~v~~GM~V~T~s 81 (82)
T PF13510_consen 62 PNVRACSTPVEDGMVVETQS 81 (82)
T ss_dssp EEEETTT-B--TTEEEE---
T ss_pred cceEcccCCCcCCcEEEEeE
Confidence 23699999999999998653
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.04 E-value=3.7e-10 Score=103.56 Aligned_cols=75 Identities=27% Similarity=0.546 Sum_probs=63.4
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT 125 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 125 (145)
.+|+| +| +++++++|+|||++++++||.||+.|. .|.|+.|+|+|.+|..+ ...+++++
T Consensus 2 ~~i~i---dg-~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~-----------~~~~~~~a 66 (847)
T PRK08166 2 ATIHV---DG-KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPED-----------TRGRLVMS 66 (847)
T ss_pred eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCcc-----------CCCCcccC
Confidence 56777 34 579999999999999999999999998 69999999999988431 23468899
Q ss_pred EEeEECCCeEEEeCCC
Q 032230 126 CVAYPTSDVTVETHKD 141 (145)
Q Consensus 126 Cq~~~~~dl~I~~~~e 141 (145)
|++.+..+|+|++..+
T Consensus 67 C~~~v~~gm~v~t~~~ 82 (847)
T PRK08166 67 CMTPATDGTFISIDDP 82 (847)
T ss_pred cCCCCCCCCEEEeCCH
Confidence 9999999999988654
No 25
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.82 E-value=9.4e-09 Score=88.92 Aligned_cols=60 Identities=33% Similarity=0.578 Sum_probs=50.6
Q ss_pred EEEEecCCCcHHHHHHH------cCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEE
Q 032230 63 QEIECPDDTYILDAAED------AGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTV 136 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I 136 (145)
.++++++|+||||+|++ .++.++++|+.|.||+|.+++ +|. .+|+|++.+.++++|
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i 84 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII 84 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence 45566799999999995 667789999999999999995 553 478999999999999
Q ss_pred EeCC
Q 032230 137 ETHK 140 (145)
Q Consensus 137 ~~~~ 140 (145)
+...
T Consensus 85 ~~~~ 88 (486)
T PRK06259 85 EPLD 88 (486)
T ss_pred EecC
Confidence 8653
No 26
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.67 E-value=4.4e-08 Score=80.20 Aligned_cols=71 Identities=24% Similarity=0.530 Sum_probs=58.1
Q ss_pred eeEEEEECCCCeEEEEe-cCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeE
Q 032230 51 TYKVKLITPEGEQEIEC-PDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYV 123 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v-~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~r 123 (145)
..+|+| +| +++++ ++|+||||+++++||.||+-|. .|.|+.|.|+| +|. .+..
T Consensus 68 ~~~I~I---DG-k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~lv 127 (297)
T PTZ00305 68 RAIMFV---NK-RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNLV 127 (297)
T ss_pred ceEEEE---CC-EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCcc
Confidence 355555 34 68999 9999999999999999999998 38899999998 222 2456
Q ss_pred EeEEeEECCCeEEEeCCC
Q 032230 124 LTCVAYPTSDVTVETHKD 141 (145)
Q Consensus 124 LaCq~~~~~dl~I~~~~e 141 (145)
-+|.+.+...|+|.+..+
T Consensus 128 ~AC~tpV~eGM~V~T~Se 145 (297)
T PTZ00305 128 VSCATVALPGMSIITDSR 145 (297)
T ss_pred cccCCcCCCCCEEEeCCH
Confidence 799999999999998654
No 27
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.62 E-value=7.1e-08 Score=86.45 Aligned_cols=73 Identities=30% Similarity=0.589 Sum_probs=60.7
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCe
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY 122 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~ 122 (145)
|.+++|+| +| +++++++|+|||++++++|+.||..|. .|.|+.|.|+| +|. .+.
T Consensus 1 ~~~v~~~i---dg-~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~ 60 (652)
T PRK12814 1 MNTISLTI---NG-RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRF 60 (652)
T ss_pred CCeEEEEE---CC-EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cce
Confidence 44577887 34 689999999999999999999999997 69999999998 221 135
Q ss_pred EEeEEeEECCCeEEEeCCC
Q 032230 123 VLTCVAYPTSDVTVETHKD 141 (145)
Q Consensus 123 rLaCq~~~~~dl~I~~~~e 141 (145)
.++|++.+..+|+|.+..+
T Consensus 61 ~~aC~t~~~~Gm~v~t~~~ 79 (652)
T PRK12814 61 VPACSTAVSEGMVIETENA 79 (652)
T ss_pred ecCcCCCCCCCCEEEeCcH
Confidence 7899999999999988654
No 28
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.54 E-value=1.4e-07 Score=85.22 Aligned_cols=71 Identities=34% Similarity=0.595 Sum_probs=58.5
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT 125 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 125 (145)
++|+| +| +++++++|+|||++++++||.||+-|. .|.|+.|.|+|..+. ....-+
T Consensus 2 ~~~~I---dg-~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~s 62 (687)
T PRK09130 2 VKLKV---DG-KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVAS 62 (687)
T ss_pred eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcccc
Confidence 57887 34 689999999999999999999999997 699999999984211 123568
Q ss_pred EEeEECCCeEEEeCCC
Q 032230 126 CVAYPTSDVTVETHKD 141 (145)
Q Consensus 126 Cq~~~~~dl~I~~~~e 141 (145)
|.+.+...|+|.+..+
T Consensus 63 C~~~v~~gm~v~T~s~ 78 (687)
T PRK09130 63 CAMPVGEGMVIFTNTP 78 (687)
T ss_pred cCCCCCCCCEEEeCCH
Confidence 9999999999988654
No 29
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.52 E-value=1.7e-07 Score=84.60 Aligned_cols=71 Identities=32% Similarity=0.658 Sum_probs=58.3
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL 124 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 124 (145)
|.||+| || +++++++|+|||++++++||+||+-|. .|.|..|.|++..+. ..+-
T Consensus 1 m~tI~I---DG-~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~ 60 (693)
T COG1034 1 MVTITI---DG-KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVA 60 (693)
T ss_pred CeEEEE---CC-EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------cccc
Confidence 357887 34 689999999999999999999999997 399999999984322 3567
Q ss_pred eEEeEECCCeEEEeCCC
Q 032230 125 TCVAYPTSDVTVETHKD 141 (145)
Q Consensus 125 aCq~~~~~dl~I~~~~e 141 (145)
+|.+.+..+++|.+..+
T Consensus 61 SC~tpv~dGM~I~T~s~ 77 (693)
T COG1034 61 SCATPVTDGMVISTNSE 77 (693)
T ss_pred ccccccCCCeEEecCCH
Confidence 89998888899887654
No 30
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.43 E-value=3.2e-07 Score=81.46 Aligned_cols=64 Identities=31% Similarity=0.552 Sum_probs=54.6
Q ss_pred EEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEE
Q 032230 63 QEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTV 136 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I 136 (145)
+++++++|+|||++++++||.||+-|. .|.|..|.|+|. |.. ...+.+|.+.+..+|+|
T Consensus 6 ~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~-g~~--------------~~~~~aC~~~~~~gm~v 70 (603)
T TIGR01973 6 KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE-KFP--------------DKPVASCATPVTDGMKI 70 (603)
T ss_pred EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC-CCC--------------CCcccccCCCCCCCCEE
Confidence 689999999999999999999999997 799999999982 210 01478999999999999
Q ss_pred EeCCC
Q 032230 137 ETHKD 141 (145)
Q Consensus 137 ~~~~e 141 (145)
.+..+
T Consensus 71 ~t~~~ 75 (603)
T TIGR01973 71 STNSE 75 (603)
T ss_pred EeCCH
Confidence 88654
No 31
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.36 E-value=6.2e-07 Score=81.72 Aligned_cols=70 Identities=26% Similarity=0.572 Sum_probs=58.3
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT 125 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 125 (145)
++|+| || +++++++|+|||++++++|+.||+-|. .|.|..|.|+| +|. ...+.+
T Consensus 2 ~~~~i---dg-~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~a 61 (776)
T PRK09129 2 VEIEI---DG-KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPA 61 (776)
T ss_pred eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCcc
Confidence 57777 34 689999999999999999999999998 49999999998 221 124679
Q ss_pred EEeEECCCeEEEeCCC
Q 032230 126 CVAYPTSDVTVETHKD 141 (145)
Q Consensus 126 Cq~~~~~dl~I~~~~e 141 (145)
|.+.+..+|+|.+..+
T Consensus 62 C~~~~~~gm~v~t~~~ 77 (776)
T PRK09129 62 CATPVTDGMKVFTRSE 77 (776)
T ss_pred cCCCCCCCCEEEcCCH
Confidence 9999999999988654
No 32
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.36 E-value=7.9e-07 Score=81.72 Aligned_cols=68 Identities=25% Similarity=0.522 Sum_probs=56.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT 125 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 125 (145)
++|+| +| +++++++|+|||++++++|+.||+-|. .|.|+.|.|+| +|. ..+|
T Consensus 2 v~i~I---dG-~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~A 59 (819)
T PRK08493 2 ITITI---NG-KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYS 59 (819)
T ss_pred eEEEE---CC-EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Eecc
Confidence 57777 34 689999999999999999999998774 59999999998 221 1679
Q ss_pred EEeEECCCeEEEeCCC
Q 032230 126 CVAYPTSDVTVETHKD 141 (145)
Q Consensus 126 Cq~~~~~dl~I~~~~e 141 (145)
|++.+...|+|++..+
T Consensus 60 C~t~v~dGM~V~T~s~ 75 (819)
T PRK08493 60 CNTKAKEGMNILTNTP 75 (819)
T ss_pred ccCCCCCCCEEEecCH
Confidence 9999999999988654
No 33
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.31 E-value=7.6e-07 Score=71.14 Aligned_cols=57 Identities=23% Similarity=0.492 Sum_probs=43.1
Q ss_pred EEEEecCCCcHHHHHHHc------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC----
Q 032230 63 QEIECPDDTYILDAAEDA------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS---- 132 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~---- 132 (145)
++++++++.||||+|..- -+.+.++|+.|.||+|.++| .|. -+|||++.+..
T Consensus 26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~~~~~ 87 (239)
T PRK13552 26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR-----------------PTLACRTLTSDYPDG 87 (239)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe-----------------EhhhhhccHhhcCCC
Confidence 456667999999999863 25678999999999999998 333 37888887653
Q ss_pred CeEEE
Q 032230 133 DVTVE 137 (145)
Q Consensus 133 dl~I~ 137 (145)
.++|+
T Consensus 88 ~i~ie 92 (239)
T PRK13552 88 VITLM 92 (239)
T ss_pred cEEEE
Confidence 35554
No 34
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.30 E-value=7.4e-07 Score=63.50 Aligned_cols=53 Identities=30% Similarity=0.603 Sum_probs=39.1
Q ss_pred eEEEEecCCCcHHHHHHH------cCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC
Q 032230 62 EQEIECPDDTYILDAAED------AGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS 132 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~ 132 (145)
.+++++.++.|+||+|.. .-+...++|+.|.||+|.++| .|. -+|||.+.+..
T Consensus 20 ~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~ 78 (110)
T PF13085_consen 20 EYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDD 78 (110)
T ss_dssp EEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGG
T ss_pred EEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchh
Confidence 356788899999999975 255688999999999999998 332 37888887654
No 35
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.30 E-value=1.4e-06 Score=79.94 Aligned_cols=69 Identities=29% Similarity=0.572 Sum_probs=58.0
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL 124 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 124 (145)
+++|+| || +++++++|+|||++++++||.||+-|. .|.|..|.|+| +|. ...+-
T Consensus 4 ~v~~~i---dg-~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~ 63 (797)
T PRK07860 4 LVTLTI---DG-VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQA 63 (797)
T ss_pred eEEEEE---CC-EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------ccccc
Confidence 467777 34 689999999999999999999999997 69999999998 221 12456
Q ss_pred eEEeEECCCeEEEeC
Q 032230 125 TCVAYPTSDVTVETH 139 (145)
Q Consensus 125 aCq~~~~~dl~I~~~ 139 (145)
+|.+.+..+|+|++.
T Consensus 64 aC~t~v~~gm~V~t~ 78 (797)
T PRK07860 64 SCTTTVTDGMVVKTQ 78 (797)
T ss_pred ccCCCCCCCcEEEeC
Confidence 999999999999986
No 36
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.27 E-value=1.1e-06 Score=70.63 Aligned_cols=57 Identities=18% Similarity=0.347 Sum_probs=42.4
Q ss_pred EEEEecCCCcHHHHHHHc-------------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230 63 QEIECPDDTYILDAAEDA-------------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY 129 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~-------------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~ 129 (145)
++|++.++.||||+|..- -+...++|+.|.||+|.++| .|. -+|||+++
T Consensus 25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~ 86 (249)
T PRK08640 25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK-----------------PRQACTAL 86 (249)
T ss_pred EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc-----------------cchhhhCh
Confidence 456667899999999843 15678999999999999998 433 36888887
Q ss_pred EC---CCeEEE
Q 032230 130 PT---SDVTVE 137 (145)
Q Consensus 130 ~~---~dl~I~ 137 (145)
+. +.++|+
T Consensus 87 v~~~~~~i~ie 97 (249)
T PRK08640 87 IDQLEQPIRLE 97 (249)
T ss_pred HHHcCCcEEEE
Confidence 63 345555
No 37
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.20 E-value=7.7e-06 Score=64.58 Aligned_cols=50 Identities=24% Similarity=0.509 Sum_probs=39.1
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
++++| ++..++++++++++||++|+++ |+ ..+++|+.|.||.|.| +++|.
T Consensus 52 i~~~V--NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~ 103 (217)
T PRK11433 52 VTLKV--NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGR 103 (217)
T ss_pred EEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCE
Confidence 44555 2336678999999999999975 54 4889999999999999 44663
No 38
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.19 E-value=5.4e-06 Score=69.04 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=34.5
Q ss_pred eEEEEecCCCcHHHHHHHcCCCCC------CCCCCccccCCeEEE
Q 032230 62 EQEIECPDDTYILDAAEDAGIDLP------YSCRAGSCSTCAGKV 100 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~Gi~i~------~~C~~G~CgtC~v~v 100 (145)
.+++++++|+||||+|.+.++.++ .+|+.|.||+|.|+|
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i 64 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI 64 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE
Confidence 367888999999999999999874 568899999999998
No 39
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.17 E-value=3.5e-06 Score=67.87 Aligned_cols=39 Identities=21% Similarity=0.652 Sum_probs=34.0
Q ss_pred eEEEEecCCCcHHHHHHHcCC------CCCCCCCCccccCCeEEE
Q 032230 62 EQEIECPDDTYILDAAEDAGI------DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~Gi------~i~~~C~~G~CgtC~v~v 100 (145)
.++++++++.|||++|..-+. ...++|+.|.||+|.+.|
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I 65 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI 65 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE
Confidence 356778899999999999664 678999999999999998
No 40
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.12 E-value=2.6e-06 Score=68.27 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=31.1
Q ss_pred EEEEecCCCcHHHHHHHc------CCCCCCCCCCccccCCeEEE
Q 032230 63 QEIECPDDTYILDAAEDA------GIDLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~------Gi~i~~~C~~G~CgtC~v~v 100 (145)
++++++++.|||++|... .+...++|+.|.||+|.++|
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I 70 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV 70 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE
Confidence 456677999999999653 34566899999999999998
No 41
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.12 E-value=3.8e-06 Score=67.60 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=39.7
Q ss_pred EEEE-ecCCCcHHHHHHHc----------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230 63 QEIE-CPDDTYILDAAEDA----------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP 130 (145)
Q Consensus 63 ~~~~-v~~g~tLLeal~~~----------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 130 (145)
++|+ +.++.|||++|..- .+.+.++|+.|+||+|.++| .|..... ..-+|||++.+
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p~~~-----------~~~~LAC~t~~ 88 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRPHGP-----------DRGTTTCQLHM 88 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCccCCC-----------Ccccchhhhhh
Confidence 3444 45799999999742 36789999999999999997 5543211 11278888765
No 42
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=98.10 E-value=8.7e-06 Score=61.48 Aligned_cols=51 Identities=18% Similarity=0.414 Sum_probs=41.9
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCC-CCCCCCCCccccCCeEEEEeCC
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGI-DLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi-~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
.+++++ ++..++++++++++||+.|++.|+ ....+|+.|.||.|.|.| +|.
T Consensus 8 ~i~~~v--NG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~ 59 (159)
T PRK09908 8 TIECTI--NGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT 59 (159)
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence 345555 344667889999999999999987 699999999999999997 554
No 43
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.97 E-value=1.7e-05 Score=72.09 Aligned_cols=67 Identities=34% Similarity=0.639 Sum_probs=51.8
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCC------ccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRA------GSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL 124 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~------G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 124 (145)
+++|+| +| +++++++|+|||++++++||.||+-|.. +.|.+|.|.+ +|. ..-
T Consensus 5 ~i~vti---dg-~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~-----------------l~r 62 (978)
T COG3383 5 MITVTI---DG-RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGK-----------------LVR 62 (978)
T ss_pred eEEEEE---CC-eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCc-----------------eec
Confidence 467777 34 6899999999999999999999999983 8999999995 554 234
Q ss_pred eEEeEECCCeEEEeC
Q 032230 125 TCVAYPTSDVTVETH 139 (145)
Q Consensus 125 aCq~~~~~dl~I~~~ 139 (145)
+|-+.+...++|.+.
T Consensus 63 sCsT~v~dGm~v~t~ 77 (978)
T COG3383 63 SCSTPVEDGMVVRTN 77 (978)
T ss_pred cccccccCCcEEecc
Confidence 566656556666554
No 44
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.96 E-value=2.7e-05 Score=63.57 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=34.5
Q ss_pred eEEEEecCCCcHHHHHHHcCCCC------CCCCCCccccCCeEEEEeC
Q 032230 62 EQEIECPDDTYILDAAEDAGIDL------PYSCRAGSCSTCAGKVVSG 103 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~G 103 (145)
.+++++++|+|||++|.+.+..+ .++|+.|.||+|.|+| +|
T Consensus 26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG 72 (279)
T PRK12576 26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NG 72 (279)
T ss_pred EEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CC
Confidence 35678899999999999976543 5889999999999998 44
No 45
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.93 E-value=6.3e-06 Score=64.79 Aligned_cols=41 Identities=32% Similarity=0.604 Sum_probs=33.8
Q ss_pred eEEEEecCCCcHHHHHHHcC------CCCCCCCCCccccCCeEEEEeC
Q 032230 62 EQEIECPDDTYILDAAEDAG------IDLPYSCRAGSCSTCAGKVVSG 103 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~G------i~i~~~C~~G~CgtC~v~v~~G 103 (145)
.+++++++|+|||++|.+.+ +....+|+.|.||+|.|+| +|
T Consensus 16 ~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG 62 (220)
T TIGR00384 16 SYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NG 62 (220)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CC
Confidence 35677889999999999855 3457899999999999987 45
No 46
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.93 E-value=2e-05 Score=62.95 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=39.5
Q ss_pred EEecC-CCcHHHHHHHc-----CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC---CCeE
Q 032230 65 IECPD-DTYILDAAEDA-----GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT---SDVT 135 (145)
Q Consensus 65 ~~v~~-g~tLLeal~~~-----Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~dl~ 135 (145)
+++.+ +.||||+|..- -+...++|+.|.||+|.++| .|. -+|||++++. +.++
T Consensus 27 v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~~~~~~i~ 88 (235)
T PRK12575 27 IAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQALPREIV 88 (235)
T ss_pred ecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHhHcCCCEE
Confidence 33334 56899999753 24568999999999999998 332 5788888776 4456
Q ss_pred EE
Q 032230 136 VE 137 (145)
Q Consensus 136 I~ 137 (145)
|+
T Consensus 89 ie 90 (235)
T PRK12575 89 LR 90 (235)
T ss_pred Ee
Confidence 55
No 47
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.91 E-value=1.6e-05 Score=64.90 Aligned_cols=50 Identities=26% Similarity=0.570 Sum_probs=37.7
Q ss_pred EEEec--C-CCcHHHHHHHc------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230 64 EIECP--D-DTYILDAAEDA------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT 131 (145)
Q Consensus 64 ~~~v~--~-g~tLLeal~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 131 (145)
+|+++ + +.||||+|..- -+.+.++|+.|+||+|.++| .|. -+|+|++++.
T Consensus 63 ~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~v~ 121 (276)
T PLN00129 63 SYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK-----------------NTLACLTKID 121 (276)
T ss_pred EEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc-----------------ccccccccHh
Confidence 44554 3 79999999862 24578999999999999997 333 4788888765
No 48
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.87 E-value=3.4e-05 Score=57.67 Aligned_cols=49 Identities=22% Similarity=0.486 Sum_probs=39.9
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
+++++ +..++++++++++||++|++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 3 ~~~vN--G~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~ 53 (148)
T TIGR03193 3 RLTVN--GRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR 53 (148)
T ss_pred EEEEC--CEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence 45553 345678899999999999974 76 689999999999999998 553
No 49
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.84 E-value=4.6e-05 Score=60.88 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=31.3
Q ss_pred EEEEecCCCcHHHHHHH------cCCCCCCCCCCccccCCeEEE
Q 032230 63 QEIECPDDTYILDAAED------AGIDLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~------~Gi~i~~~C~~G~CgtC~v~v 100 (145)
++++..+|.||||+|.. .-+.+.++|+.|+||+|.+.|
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I 65 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI 65 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE
Confidence 44555699999999975 234678999999999999997
No 50
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.72 E-value=3.8e-05 Score=60.87 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=34.8
Q ss_pred eEEEEec-CCCcHHHHHHHcC-CC-----CCCCCCCccccCCeEEEEeCC
Q 032230 62 EQEIECP-DDTYILDAAEDAG-ID-----LPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 62 ~~~~~v~-~g~tLLeal~~~G-i~-----i~~~C~~G~CgtC~v~v~~G~ 104 (145)
.++++++ +|+|||++|.+.+ .. ..++|+.|.||+|.|+| +|.
T Consensus 19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~ 67 (232)
T PRK05950 19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGK 67 (232)
T ss_pred EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCc
Confidence 3567888 9999999999987 33 36889999999999998 554
No 51
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.51 E-value=0.00023 Score=53.33 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=39.8
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
++++|+ +..+++.+.++++|++.|++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 4 i~f~vN--G~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 4 FRFTVN--GQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred EEEEEC--CEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 456663 335667788999999999974 77 588899999999999998 553
No 52
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.48 E-value=0.00032 Score=52.76 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=41.2
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEEEeCC
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
.++++++ +..+++++.++++||++|++ .|+ ...++|+.|.||.|.|.+ +|+
T Consensus 3 ~i~ltvN--G~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~ 55 (156)
T COG2080 3 PITLTVN--GEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGE 55 (156)
T ss_pred cEEEEEC--CeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCe
Confidence 3566663 44678999999999999995 566 589999999999999987 554
No 53
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.94 E-value=0.0012 Score=57.50 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=37.1
Q ss_pred EEEECCCCeEEE-EecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230 54 VKLITPEGEQEI-ECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 54 Vti~~~~~~~~~-~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v 100 (145)
++++ +..+++ +++++++||+.+++. |+ ....+|+.|.||.|.|.|
T Consensus 3 ~~~N--g~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 3 FFLN--GETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred EEEC--CEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 4552 335567 588999999999974 87 699999999999999998
No 54
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.83 E-value=0.0023 Score=60.18 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=39.2
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCC-CCCCC-CCCccccCCeEEEEeCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGI-DLPYS-CRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi-~i~~~-C~~G~CgtC~v~v~~G~ 104 (145)
++++++ +..++++++++++||+.|++.|+ ..... |+.|.||.|.|.| +|.
T Consensus 3 i~~~vN--g~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~ 54 (956)
T PRK09800 3 IHFTLN--GAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGN 54 (956)
T ss_pred EEEEEC--CEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCe
Confidence 455553 44667889999999999999777 46665 7899999999998 554
No 55
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=96.68 E-value=0.0034 Score=58.40 Aligned_cols=47 Identities=19% Similarity=0.544 Sum_probs=39.5
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEEEeCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
+++++ | ++++++++++||+.|++ .|+ ....+|+.|.||.|.|.| +|.
T Consensus 2 ~~~~n---g-~~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~ 50 (848)
T TIGR03311 2 EFIVN---G-REVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGK 50 (848)
T ss_pred EEEEC---C-EEeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCe
Confidence 56663 4 47899999999999996 587 799999999999999998 554
No 56
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=96.28 E-value=0.006 Score=57.41 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=36.4
Q ss_pred CeEEEEecCCCcHHHHHHHcCCC-CCC-CCCCccccCCeEEEEeCC
Q 032230 61 GEQEIECPDDTYILDAAEDAGID-LPY-SCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 61 ~~~~~~v~~g~tLLeal~~~Gi~-i~~-~C~~G~CgtC~v~v~~G~ 104 (145)
..++++++++++||+.|++.|+. +.. .|+.|.||.|.|.| +|.
T Consensus 6 ~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~ 50 (951)
T TIGR03313 6 APQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGV 50 (951)
T ss_pred EEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCe
Confidence 35678899999999999998874 777 69999999999998 554
No 57
>PLN00192 aldehyde oxidase
Probab=96.25 E-value=0.0089 Score=58.16 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=37.9
Q ss_pred eEEEEECCCCeEEE-EecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230 52 YKVKLITPEGEQEI-ECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 52 ~~Vti~~~~~~~~~-~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v 100 (145)
+++++ ++..+++ ++++++|||+.|++. |+ .....|+.|.||.|.|-|
T Consensus 6 i~~~v--Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v 55 (1344)
T PLN00192 6 LVFAV--NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLL 55 (1344)
T ss_pred EEEEE--CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence 44555 2335566 588999999999975 77 689999999999999999
No 58
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=95.86 E-value=0.012 Score=57.23 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=33.0
Q ss_pred EEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230 65 IECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 65 ~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~ 101 (145)
.+++++++||+.|++. |+ ....+|+.|.||.|.|.|-
T Consensus 15 ~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 15 KNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred ccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 4789999999999974 76 6899999999999999984
No 59
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=95.79 E-value=0.016 Score=51.22 Aligned_cols=40 Identities=33% Similarity=0.628 Sum_probs=36.9
Q ss_pred EEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEe
Q 032230 63 QEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVS 102 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~ 102 (145)
+.+.+++|.|+|++....|++||--|. .|.|..|.|+|..
T Consensus 40 ~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 40 QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 679999999999999999999999998 3999999999854
No 60
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.54 E-value=0.17 Score=47.83 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=52.9
Q ss_pred eeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCC-----C------CCCCccccCCeEEEEeCCccCCCCCCCChhcc
Q 032230 50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLP-----Y------SCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQI 118 (145)
Q Consensus 50 ~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~-----~------~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~ 118 (145)
..++|+| +| +.+++.+|+||..||+.+|+.+- + -|..|.|--|.|.|-.|...
T Consensus 11 ~~~~~~~---dg-~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~------------ 74 (985)
T TIGR01372 11 RPLRFTF---DG-KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR------------ 74 (985)
T ss_pred CeEEEEE---CC-EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCC------------
Confidence 3456666 34 68999999999999999998531 2 37778899999999433110
Q ss_pred cCCeEEeEEeEECCCeEEEeC
Q 032230 119 DAGYVLTCVAYPTSDVTVETH 139 (145)
Q Consensus 119 ~~g~rLaCq~~~~~dl~I~~~ 139 (145)
..-+.+|++.+..+|+|+..
T Consensus 75 -~~~~~ac~~~~~~gm~~~~~ 94 (985)
T TIGR01372 75 -EPNTRATTQELYDGLVATSQ 94 (985)
T ss_pred -CCCccceeEEcccCCEEecc
Confidence 11356899888888888764
No 61
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=92.90 E-value=0.38 Score=38.44 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=33.6
Q ss_pred CCcHHHHHHH--cCC----CCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCC
Q 032230 70 DTYILDAAED--AGI----DLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSD 133 (145)
Q Consensus 70 g~tLLeal~~--~Gi----~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d 133 (145)
|--+||++.+ +.+ -+.-+|+.|+||+|...+- ..-.|+|.+.+..+
T Consensus 76 GpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~------------------G~NtLACi~kId~n 127 (288)
T KOG3049|consen 76 GPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIN------------------GTNTLACICKIDQN 127 (288)
T ss_pred chHHHHHHHHhhcccCCceehhhhhhccccccceeccC------------------CCceeEEEEeeccC
Confidence 6679999985 333 3577999999999999872 22467887777653
No 62
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=92.41 E-value=0.3 Score=42.04 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=36.4
Q ss_pred eEEEEECCCCeEE-EEecCCCcHHHHHH-HcCC-CCCCCCCCccccCCeEEE
Q 032230 52 YKVKLITPEGEQE-IECPDDTYILDAAE-DAGI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 52 ~~Vti~~~~~~~~-~~v~~g~tLLeal~-~~Gi-~i~~~C~~G~CgtC~v~v 100 (145)
.+|.|..++..+. -.+++..||||.|+ +.++ .-.-+|..|-||.|.|-|
T Consensus 7 ~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV 58 (493)
T COG4630 7 NTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV 58 (493)
T ss_pred ceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence 4455543333222 35789999999999 6677 478899999999999977
No 63
>PLN02906 xanthine dehydrogenase
Probab=90.47 E-value=0.29 Score=47.84 Aligned_cols=32 Identities=25% Similarity=0.587 Sum_probs=28.5
Q ss_pred CCcHHHHHHHcCC-CCCCCCCCccccCCeEEEE
Q 032230 70 DTYILDAAEDAGI-DLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 70 g~tLLeal~~~Gi-~i~~~C~~G~CgtC~v~v~ 101 (145)
+++||+.|++.|+ ....+|+.|.||.|.|.|-
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 4689999998776 5899999999999999985
No 64
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=88.68 E-value=0.33 Score=39.40 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=35.5
Q ss_pred eeccCCccc--cccCCCCceeeeeccccCCCCCCcccceeeeEEE-EECCCCeEEEEecCCCcHHHHHH
Q 032230 13 FIRNKPTVT--SLKAMPNMGQALFGLKANNNRGGRVIAMATYKVK-LITPEGEQEIECPDDTYILDAAE 78 (145)
Q Consensus 13 ~~~~~~~~~--~~~~~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vt-i~~~~~~~~~~v~~g~tLLeal~ 78 (145)
|....+... ..++.+++|.|.|++.......+ .... +.. . .+++.+.+|+||||+++
T Consensus 207 fm~av~~~l~~~g~~~~~vh~E~F~~~~~~~~~~-------~~~~~~~~-s-~~~~~~~~g~t~lea~~ 266 (266)
T COG1018 207 FMQAVRLALEALGVPDDRVHLEGFGPMLKDTAAL-------LPFTTLAR-S-GKEVRVPPGQTLLEAAE 266 (266)
T ss_pred HHHHHHHHHHHcCCChhcEEEeecCCCCcccccc-------ccchhhcc-c-cceEecCCCchHHHhhC
Confidence 444334433 55778999999999886321111 1111 322 2 36799999999999874
No 65
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=88.09 E-value=0.31 Score=38.44 Aligned_cols=31 Identities=13% Similarity=0.492 Sum_probs=23.3
Q ss_pred cHHHHHHHcCCCC------CCCCCCccccCCeEEEEe
Q 032230 72 YILDAAEDAGIDL------PYSCRAGSCSTCAGKVVS 102 (145)
Q Consensus 72 tLLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~ 102 (145)
.+.+.+.++|++. ...||.|.||+|.+.+..
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~ 231 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET 231 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence 3556677788753 557999999999999643
No 66
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=87.49 E-value=0.42 Score=37.71 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCC------CCCCCCccccCCeEEEEeC
Q 032230 73 ILDAAEDAGIDL------PYSCRAGSCSTCAGKVVSG 103 (145)
Q Consensus 73 LLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~G 103 (145)
+.+.+.+.|++. ...||.|.|+.|.++. .|
T Consensus 195 ~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~-~~ 230 (248)
T cd06219 195 VSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV-GG 230 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCccceeeeEEEEe-CC
Confidence 456667788863 6689999999999996 44
No 67
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=87.18 E-value=0.6 Score=36.82 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=24.6
Q ss_pred cHHHHHHHcCCCC------CCCCCCccccCCeEEEEe
Q 032230 72 YILDAAEDAGIDL------PYSCRAGSCSTCAGKVVS 102 (145)
Q Consensus 72 tLLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~ 102 (145)
.+.+.+++.|++. +..|+.|.||.|+....+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence 4566677888863 667999999999999854
No 68
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.86 E-value=3.2 Score=26.62 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=27.3
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
|.+.+|++......++++++++.|+.+.+.+.|++.
T Consensus 2 ~~mm~v~vng~~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKVIGRGIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred ceEEEEEEeccccceEEEcCCCCcHHHHHHHcCCCC
Confidence 556788886322245788899999999999998754
No 69
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=84.72 E-value=1.5 Score=42.40 Aligned_cols=36 Identities=19% Similarity=0.474 Sum_probs=30.8
Q ss_pred ecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEEEe
Q 032230 67 CPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKVVS 102 (145)
Q Consensus 67 v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v~~ 102 (145)
++++.||++.|++ .|+ ...+.|+.|.||.|.|-|-.
T Consensus 17 vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 17 LPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSK 54 (1257)
T ss_pred CCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEec
Confidence 6889999999986 466 58999999999999998843
No 70
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=84.07 E-value=0.58 Score=37.94 Aligned_cols=33 Identities=15% Similarity=0.464 Sum_probs=25.8
Q ss_pred CcHHHHHHHcCCC---------CCCCCCCccccCCeEEEEeC
Q 032230 71 TYILDAAEDAGID---------LPYSCRAGSCSTCAGKVVSG 103 (145)
Q Consensus 71 ~tLLeal~~~Gi~---------i~~~C~~G~CgtC~v~v~~G 103 (145)
+.+.+.+.+.|++ -...||.|.||.|+|....|
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCc
Confidence 4577778888885 25579999999999997554
No 71
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=81.79 E-value=1.3 Score=34.49 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=23.6
Q ss_pred CcHHHHHHHcCCC------CCCCCCCccccCCeEEEE
Q 032230 71 TYILDAAEDAGID------LPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 71 ~tLLeal~~~Gi~------i~~~C~~G~CgtC~v~v~ 101 (145)
+.+.+.+++.|++ --..|+.|.||.|.|...
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence 3466677788883 235799999999999974
No 72
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=80.86 E-value=0.94 Score=26.40 Aligned_cols=18 Identities=33% Similarity=0.861 Sum_probs=14.0
Q ss_pred CCCCCccccCCeEEEEeC
Q 032230 86 YSCRAGSCSTCAGKVVSG 103 (145)
Q Consensus 86 ~~C~~G~CgtC~v~v~~G 103 (145)
-.|+.|.|+.|.+...++
T Consensus 4 M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDG 21 (40)
T ss_dssp -SSSSSSS-TTEEECSST
T ss_pred ccCCCcEeCCcEeeeecC
Confidence 469999999999998654
No 73
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=78.56 E-value=1.6 Score=35.15 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCC------CCCCCCccccCCeEEE
Q 032230 73 ILDAAEDAGIDL------PYSCRAGSCSTCAGKV 100 (145)
Q Consensus 73 LLeal~~~Gi~i------~~~C~~G~CgtC~v~v 100 (145)
+.+.+.+.|+++ .-.||.|.|+.|.++.
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 556677788853 5579999999999985
No 74
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=77.81 E-value=1.5 Score=34.68 Aligned_cols=29 Identities=17% Similarity=0.552 Sum_probs=22.8
Q ss_pred CcHHHHHHHcCCC---C------CCCCCCccccCCeEE
Q 032230 71 TYILDAAEDAGID---L------PYSCRAGSCSTCAGK 99 (145)
Q Consensus 71 ~tLLeal~~~Gi~---i------~~~C~~G~CgtC~v~ 99 (145)
+.+.++|++.|++ + .-.|+.|.||.|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 3567788888986 3 445889999999987
No 75
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=72.61 E-value=8 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=22.6
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
+|+++ | +.+++++|.||.+++...|++.
T Consensus 2 ~i~vN---G-~~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 2 NIQLN---G-EPRELPDGESVAALLAREGLAG 29 (66)
T ss_pred EEEEC---C-eEEEcCCCCCHHHHHHhcCCCC
Confidence 57773 4 5788999999999999988753
No 76
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=71.47 E-value=2.9 Score=33.38 Aligned_cols=28 Identities=21% Similarity=0.492 Sum_probs=21.5
Q ss_pred cHHHHHHHcCCC---------CCCCCCCccccCCeEE
Q 032230 72 YILDAAEDAGID---------LPYSCRAGSCSTCAGK 99 (145)
Q Consensus 72 tLLeal~~~Gi~---------i~~~C~~G~CgtC~v~ 99 (145)
.+.+.+++.|++ -.-.|+.|.||+|++.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 356677788885 2456999999999987
No 77
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=71.44 E-value=8.6 Score=25.15 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=17.6
Q ss_pred CCC-eEEEEecCCCcHHHHHHHc
Q 032230 59 PEG-EQEIECPDDTYILDAAEDA 80 (145)
Q Consensus 59 ~~~-~~~~~v~~g~tLLeal~~~ 80 (145)
|+| ...+.+.+|+||.|++...
T Consensus 7 Png~~t~V~vrpg~ti~d~L~~~ 29 (72)
T cd01760 7 PNGQRTVVPVRPGMSVRDVLAKA 29 (72)
T ss_pred cCCCeEEEEECCCCCHHHHHHHH
Confidence 555 5568999999999998753
No 78
>PRK05802 hypothetical protein; Provisional
Probab=71.11 E-value=2.8 Score=34.72 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=21.2
Q ss_pred HHHHHHH--cCCCC------CCCCCCccccCCeEEE
Q 032230 73 ILDAAED--AGIDL------PYSCRAGSCSTCAGKV 100 (145)
Q Consensus 73 LLeal~~--~Gi~i------~~~C~~G~CgtC~v~v 100 (145)
+.+.+.+ .||++ .-.||.|.||.|.++.
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVRY 304 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCcCccCCeeEEEE
Confidence 4455555 67755 5679999999999996
No 79
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=68.91 E-value=4.5 Score=37.14 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCC------CCCCCCccccCCeEEE
Q 032230 73 ILDAAEDAGIDL------PYSCRAGSCSTCAGKV 100 (145)
Q Consensus 73 LLeal~~~Gi~i------~~~C~~G~CgtC~v~v 100 (145)
+.+.+.+.|++. .-.||.|.||.|.++.
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCcccccCcceeEe
Confidence 456777788876 6789999999999964
No 80
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=67.83 E-value=11 Score=25.60 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=22.6
Q ss_pred eEEEEECCCC--eEEEEecCCCcHHHHHHHcCCC
Q 032230 52 YKVKLITPEG--EQEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 52 ~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~ 83 (145)
++|....++. ...+++++|.|+.+|+++.|+.
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCch
Confidence 3444444444 3457899999999999999995
No 81
>PRK01777 hypothetical protein; Validated
Probab=67.53 E-value=21 Score=24.50 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=24.6
Q ss_pred eEEEEECCCC--eEEEEecCCCcHHHHHHHcCCCCC
Q 032230 52 YKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLP 85 (145)
Q Consensus 52 ~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~i~ 85 (145)
++|....++. ..++++++|.|+-|++...||...
T Consensus 6 v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 6 VEVVYALPERQYLQRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCcc
Confidence 4444444443 246789999999999999999654
No 82
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=66.74 E-value=2.5 Score=33.71 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCC---------CCCCCCccccCCeEE
Q 032230 73 ILDAAEDAGIDL---------PYSCRAGSCSTCAGK 99 (145)
Q Consensus 73 LLeal~~~Gi~i---------~~~C~~G~CgtC~v~ 99 (145)
+.+.+.+.|++- .-.|+.|.||.|+|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 456677788852 346999999999887
No 83
>PRK07440 hypothetical protein; Provisional
Probab=64.94 E-value=18 Score=23.28 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=23.3
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
.+|+++ | +.++++++.||.+.+.+.+++.
T Consensus 5 m~i~vN---G-~~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 5 ITLQVN---G-ETRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred eEEEEC---C-EEEEcCCCCCHHHHHHHcCCCC
Confidence 567773 4 5788999999999999988854
No 84
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=63.74 E-value=4.2 Score=31.67 Aligned_cols=16 Identities=31% Similarity=0.901 Sum_probs=14.3
Q ss_pred CCCCCCccccCCeEEE
Q 032230 85 PYSCRAGSCSTCAGKV 100 (145)
Q Consensus 85 ~~~C~~G~CgtC~v~v 100 (145)
...|+.|.||.|.+..
T Consensus 213 ~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 213 PMCCGIGICGACTIET 228 (243)
T ss_pred cccCccccccceEEEe
Confidence 5679999999999985
No 85
>smart00455 RBD Raf-like Ras-binding domain.
Probab=60.16 E-value=22 Score=22.90 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCC-eEEEEecCCCcHHHHHHH
Q 032230 59 PEG-EQEIECPDDTYILDAAED 79 (145)
Q Consensus 59 ~~~-~~~~~v~~g~tLLeal~~ 79 (145)
|++ ...+.+.+|+||.|++..
T Consensus 7 P~~~~~~V~vrpg~tl~e~L~~ 28 (70)
T smart00455 7 PDNQRTVVKVRPGKTVRDALAK 28 (70)
T ss_pred CCCCEEEEEECCCCCHHHHHHH
Confidence 555 556889999999999875
No 86
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=59.98 E-value=23 Score=22.20 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=22.8
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGIDLP 85 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~ 85 (145)
+|+++ | ..++++++.||.+.+...|++..
T Consensus 2 ~i~vN---G-~~~~~~~~~tl~~ll~~l~~~~~ 30 (65)
T PRK05863 2 IVVVN---E-EQVEVDEQTTVAALLDSLGFPEK 30 (65)
T ss_pred EEEEC---C-EEEEcCCCCcHHHHHHHcCCCCC
Confidence 57773 3 46888899999999999888543
No 87
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=56.15 E-value=27 Score=23.41 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=24.5
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCC
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~ 83 (145)
|.+.+|+++ | +..+++++.||.+.+...+++
T Consensus 16 ~~~m~I~VN---G-~~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITISIN---D-QSIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEEEC---C-eEEEcCCCCcHHHHHHHcCCC
Confidence 456788884 4 478899999999999987764
No 88
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=53.65 E-value=35 Score=22.02 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=24.0
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
++|.++ + ++++++++.|+.|.+.+.|++.
T Consensus 3 m~i~~n---g-~~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 3 MTIQLN---G-KEVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred EEEEEC---C-EEEEcCCCCcHHHHHHHhCCCC
Confidence 466663 3 6899999999999999999986
No 89
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=52.29 E-value=14 Score=35.33 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCC------CCCCCCccccCCeEEE
Q 032230 73 ILDAAEDAGIDL------PYSCRAGSCSTCAGKV 100 (145)
Q Consensus 73 LLeal~~~Gi~i------~~~C~~G~CgtC~v~v 100 (145)
+.+.+++.|++. ...|+-|.|+.|.|.+
T Consensus 862 v~~~l~~~Gv~~~vSlE~~M~CG~G~C~~C~v~~ 895 (944)
T PRK12779 862 VSDLTKPYGVKTVASLNSIMVDATGMCGACMVPV 895 (944)
T ss_pred HHHHHHHcCCCeEEeecccccCCCeeeCeeeeee
Confidence 456667788864 5679999999999985
No 90
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=51.93 E-value=30 Score=21.23 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.9
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~ 83 (145)
+|+|+ + ..++++++.||.+.+...++.
T Consensus 2 ~i~vN---g-~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 2 DIQLN---Q-QTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEEC---C-EEEECCCCCcHHHHHHhhCCC
Confidence 57773 3 578899999999999998875
No 91
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=51.64 E-value=12 Score=35.78 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=21.0
Q ss_pred HHHHHHHcCCC------CCCCCCCccccCCeEEE
Q 032230 73 ILDAAEDAGID------LPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 73 LLeal~~~Gi~------i~~~C~~G~CgtC~v~v 100 (145)
+.+.++..|++ -...||.|.||.|+|.+
T Consensus 196 v~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHCCCcEEECChhheeCccceeCCCEeee
Confidence 34555667874 25679999999999985
No 92
>PRK06437 hypothetical protein; Provisional
Probab=50.80 E-value=40 Score=21.32 Aligned_cols=23 Identities=26% Similarity=0.396 Sum_probs=20.0
Q ss_pred eEEEEecCCCcHHHHHHHcCCCC
Q 032230 62 EQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
+++++++++.|+.+.+.+.|++.
T Consensus 12 ~~~~~i~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 12 NKTIEIDHELTVNDIIKDLGLDE 34 (67)
T ss_pred ceEEEcCCCCcHHHHHHHcCCCC
Confidence 47899999999999999998853
No 93
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=48.78 E-value=31 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCC-eEEEEecCCCcHHHHHHHc----CCCCCCCCCCccccCCeEEEEe
Q 032230 59 PEG-EQEIECPDDTYILDAAEDA----GIDLPYSCRAGSCSTCAGKVVS 102 (145)
Q Consensus 59 ~~~-~~~~~v~~g~tLLeal~~~----Gi~i~~~C~~G~CgtC~v~v~~ 102 (145)
|++ ...+++.+|++|-|++.++ |+. .-.|.|....
T Consensus 7 PnqQrT~V~vrpG~tl~daL~KaLk~R~l~---------pe~C~V~~~~ 46 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKALKVRGLQ---------PECCAVFRLG 46 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCC---------hhHeEEEEcC
Confidence 443 4568999999999988764 332 4457777663
No 94
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=46.79 E-value=51 Score=20.58 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=22.1
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
+|+++ | +.++++++.||.+.+...++..
T Consensus 2 ~i~vN---g-~~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 2 QILFN---D-QPMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred EEEEC---C-eEEEcCCCCCHHHHHHHcCCCC
Confidence 57773 3 5788999999999999887754
No 95
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=45.47 E-value=8.7 Score=37.01 Aligned_cols=19 Identities=37% Similarity=0.831 Sum_probs=16.0
Q ss_pred CCCCCC-CccccCCeEEEEeC
Q 032230 84 LPYSCR-AGSCSTCAGKVVSG 103 (145)
Q Consensus 84 i~~~C~-~G~CgtC~v~v~~G 103 (145)
-+-.|. .|.||.|++++ .|
T Consensus 970 s~M~c~m~giC~qC~~~~-~G 989 (1028)
T PRK06567 970 SSMQCMMKGICGQCIQKV-KG 989 (1028)
T ss_pred cHHHHHhhhhhhhheEEe-cC
Confidence 366799 99999999998 44
No 96
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=45.33 E-value=51 Score=21.18 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=22.7
Q ss_pred CCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC--CccccCCeEEEEe
Q 032230 59 PEG-EQEIECPDDTYILDAAEDAGIDLPYSCR--AGSCSTCAGKVVS 102 (145)
Q Consensus 59 ~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~--~G~CgtC~v~v~~ 102 (145)
|++ ...+.+.+|+||-|++... |. .=....|.++...
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~-------~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKA-------CKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHH-------HHTTT--CCCEEEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHH-------HHHcCCCHHHEEEEEcC
Confidence 666 4458899999999988753 22 2233456666654
No 97
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=43.59 E-value=37 Score=20.95 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=23.4
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSC 88 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C 88 (145)
+|++ |+|. ..+++.|.|.+|++..-+-.+...|
T Consensus 2 ~v~l--pdG~-~~~~~~g~T~~d~A~~I~~~l~~~~ 34 (60)
T PF02824_consen 2 RVYL--PDGS-IKELPEGSTVLDVAYSIHSSLAKRA 34 (60)
T ss_dssp EEEE--TTSC-EEEEETTBBHHHHHHHHSHHHHHCE
T ss_pred EEEC--CCCC-eeeCCCCCCHHHHHHHHCHHHHhhe
Confidence 3454 6663 5789999999999998765444433
No 98
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=41.50 E-value=24 Score=21.58 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=17.8
Q ss_pred EEEecCCCcHHHHHHHcCCCCCC
Q 032230 64 EIECPDDTYILDAAEDAGIDLPY 86 (145)
Q Consensus 64 ~~~v~~g~tLLeal~~~Gi~i~~ 86 (145)
.+++..|.||+|++..+|-..+.
T Consensus 13 ~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 13 TYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEECCCCcHHHHHHHhCCCCCC
Confidence 58888899999999988765544
No 99
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=36.74 E-value=84 Score=17.97 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.9
Q ss_pred cCCCcHHHHHHHcCCCC
Q 032230 68 PDDTYILDAAEDAGIDL 84 (145)
Q Consensus 68 ~~g~tLLeal~~~Gi~i 84 (145)
....|+-++|.++||.+
T Consensus 15 T~a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 15 TTASTVGDALKELGITL 31 (43)
T ss_pred eCCCCHHHHHHhCCCCC
Confidence 56789999999999986
No 100
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=34.27 E-value=87 Score=20.62 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=19.4
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHH
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAE 78 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~ 78 (145)
...|+|..++|...|+++++.|+-+...
T Consensus 4 ~milRvrS~dG~~Rie~~~~~t~~~L~~ 31 (80)
T PF11543_consen 4 SMILRVRSKDGMKRIEVSPSSTLSDLKE 31 (80)
T ss_dssp --EEEEE-SSEEEEEEE-TTSBHHHHHH
T ss_pred cEEEEEECCCCCEEEEcCCcccHHHHHH
Confidence 3567787788877899999999876654
No 101
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=32.23 E-value=93 Score=19.14 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHcCCCC
Q 032230 63 QEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i 84 (145)
+.++++++.|+.+.+...+++.
T Consensus 7 ~~~~~~~~~tv~~ll~~l~~~~ 28 (65)
T cd00565 7 EPREVEEGATLAELLEELGLDP 28 (65)
T ss_pred eEEEcCCCCCHHHHHHHcCCCC
Confidence 5788999999999999998753
No 102
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=31.63 E-value=46 Score=18.44 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=12.6
Q ss_pred EecCCCcHHHHHHHcCCCC
Q 032230 66 ECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 66 ~v~~g~tLLeal~~~Gi~i 84 (145)
.+.+|+|+-..+.+.|+.+
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 5788999999999988753
No 103
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=31.52 E-value=48 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=13.2
Q ss_pred EEEEecCCCcHHHHHHHcCCCC
Q 032230 63 QEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i 84 (145)
+++.|+.|+||-....+.|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 3688999999999999999864
No 104
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=31.48 E-value=20 Score=22.66 Aligned_cols=27 Identities=30% Similarity=0.642 Sum_probs=16.6
Q ss_pred CcHHHHHHHcCCC----CCCCCCCccccCCeE
Q 032230 71 TYILDAAEDAGID----LPYSCRAGSCSTCAG 98 (145)
Q Consensus 71 ~tLLeal~~~Gi~----i~~~C~~G~CgtC~v 98 (145)
+.+|+.+.+.|.- .+..| .|.|+.|.-
T Consensus 32 e~mL~~l~~kG~I~~~~~~~~~-~~~C~~C~~ 62 (69)
T PF09012_consen 32 EAMLEQLIRKGYIRKVDMSSCC-GGSCSSCGP 62 (69)
T ss_dssp HHHHHHHHCCTSCEEEEEE--S-SSSSSS-SS
T ss_pred HHHHHHHHHCCcEEEecCCCCC-CCCCCCCCC
Confidence 4577788888873 23334 788998863
No 105
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=30.89 E-value=42 Score=24.43 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=14.2
Q ss_pred ceeeeEEEEECCCCeEEEEecC
Q 032230 48 AMATYKVKLITPEGEQEIECPD 69 (145)
Q Consensus 48 ~m~~~~Vti~~~~~~~~~~v~~ 69 (145)
||+.|+||++ +..+++++++
T Consensus 1 mmk~~~itvn--g~~y~V~vee 20 (130)
T PRK06549 1 MLRKFKITID--GKEYLVEMEE 20 (130)
T ss_pred CCceEEEEEC--CEEEEEEEEE
Confidence 5778999994 3366677766
No 106
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=30.49 E-value=82 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHcCCC
Q 032230 63 QEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~ 83 (145)
++++++++.||.+.+...+++
T Consensus 6 ~~~~~~~~~tv~~ll~~l~~~ 26 (64)
T TIGR01683 6 EPVEVEDGLTLAALLESLGLD 26 (64)
T ss_pred eEEEcCCCCcHHHHHHHcCCC
Confidence 578899999999999998876
No 107
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=30.37 E-value=53 Score=17.02 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=16.4
Q ss_pred EEEecCCCcHHHHHHHcCCCC
Q 032230 64 EIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 64 ~~~v~~g~tLLeal~~~Gi~i 84 (145)
.+.+..|+|+-..+.+.|+..
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 356788899999988887753
No 108
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=30.03 E-value=94 Score=20.75 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.6
Q ss_pred CCC-eEEEEecCCCcHHHHHHH
Q 032230 59 PEG-EQEIECPDDTYILDAAED 79 (145)
Q Consensus 59 ~~~-~~~~~v~~g~tLLeal~~ 79 (145)
|+| ...+.+.+|+|++|.|..
T Consensus 7 Pn~~~~~v~vrp~~tv~dvLe~ 28 (77)
T cd01818 7 PDNQPVLTYLRPGMSVEDFLES 28 (77)
T ss_pred CCCceEEEEECCCCCHHHHHHH
Confidence 344 567889999999999875
No 109
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=29.48 E-value=1.3e+02 Score=18.95 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEECCCCeEEEEecCC-CcHHHHHHHcCCCC
Q 032230 53 KVKLITPEGEQEIECPDD-TYILDAAEDAGIDL 84 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g-~tLLeal~~~Gi~i 84 (145)
+|+++ | +.++++++ .||.+.+...|++.
T Consensus 2 ~I~vN---G-~~~~~~~~~~tv~~lL~~l~~~~ 30 (67)
T PRK07696 2 NLKIN---G-NQIEVPESVKTVAELLTHLELDN 30 (67)
T ss_pred EEEEC---C-EEEEcCCCcccHHHHHHHcCCCC
Confidence 56773 3 46788888 68999999888853
No 110
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=28.47 E-value=93 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=16.2
Q ss_pred EEEEECCCCeEEEEecCCCcHHHH
Q 032230 53 KVKLITPEGEQEIECPDDTYILDA 76 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLea 76 (145)
+|++...+..+++++++..|+.+.
T Consensus 2 ~i~vk~~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVKWGGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEEECCEEEEEEECCCCCHHHH
Confidence 344443344677889999998754
No 111
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=28.25 E-value=1.2e+02 Score=20.02 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCC-eEEEEecCCCcHHHHHHH----cCCCCCCCCCCccccCCeEEEEeCC
Q 032230 59 PEG-EQEIECPDDTYILDAAED----AGIDLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 59 ~~~-~~~~~v~~g~tLLeal~~----~Gi~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
|+| ...+.+.+|+||-|++.+ .|+. ...|.+.+..|+
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllekRgl~---------~~~~~vf~~g~~ 48 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEKRGIN---------YAAVDLFLVGGD 48 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHcCCC---------hhHEEEEEecCC
Confidence 555 456889999999888765 3443 334677777544
No 112
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=27.85 E-value=43 Score=18.11 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=14.2
Q ss_pred ecCCCcHHHHHHHcCCCC
Q 032230 67 CPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 67 v~~g~tLLeal~~~Gi~i 84 (145)
+.+|+||.+.+.+.|+.+
T Consensus 1 v~~gdtl~~IA~~~~~~~ 18 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDF 18 (44)
T ss_pred CCCCCCHHHHHHHHCcCH
Confidence 457889999999887764
No 113
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.59 E-value=2e+02 Score=20.05 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=24.1
Q ss_pred eEEEEECCCC--eEEEEecCCCcHHHHHHHcCCC
Q 032230 52 YKVKLITPEG--EQEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 52 ~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~ 83 (145)
+.|.+..|+. -.++++.+|.|+-||.+..|+.
T Consensus 6 VevvyAlPerq~l~~v~v~egatV~dAi~~Sgll 39 (99)
T COG2914 6 VEVVYALPERQYLCRVQLQEGATVEDAILASGLL 39 (99)
T ss_pred EEEEEEcCCcceEEEEEeccCcCHHHHHHhcchh
Confidence 4444445554 3468899999999999999985
No 114
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=24.68 E-value=1.1e+02 Score=19.42 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=12.5
Q ss_pred eEEEEecCCCcHHHHHHHc
Q 032230 62 EQEIECPDDTYILDAAEDA 80 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~ 80 (145)
...|.+.++.+|.++++++
T Consensus 8 r~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp EEEE---TTSBHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 5668888999998888764
No 115
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=24.12 E-value=1.3e+02 Score=18.37 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=17.3
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHH
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAE 78 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~ 78 (145)
+|++...+...++++.+..|+-+.-.
T Consensus 2 ~i~vk~~g~~~~i~v~~~~tv~~lK~ 27 (71)
T cd01812 2 RVRVKHGGESHDLSISSQATFGDLKK 27 (71)
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHH
Confidence 45555444456788899999876543
No 116
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=23.59 E-value=64 Score=23.44 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=20.7
Q ss_pred CCcHHHHHHHcCCC--CCCCCCC---ccccCCe
Q 032230 70 DTYILDAAEDAGID--LPYSCRA---GSCSTCA 97 (145)
Q Consensus 70 g~tLLeal~~~Gi~--i~~~C~~---G~CgtC~ 97 (145)
-.-|++.+.+.|++ ..++|.. .-||+|.
T Consensus 126 K~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~ 158 (169)
T cd01995 126 KAEIVRLGGELGVPLELTWSCYNGGEKHCGECD 158 (169)
T ss_pred HHHHHHHHhHcCCChhheeeccCCCCCCCCCCH
Confidence 35688888899996 5788983 3688774
No 117
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=23.17 E-value=65 Score=24.31 Aligned_cols=26 Identities=38% Similarity=0.883 Sum_probs=18.6
Q ss_pred cHHHHHHHcC---C--CCCCCCCC---ccccCCe
Q 032230 72 YILDAAEDAG---I--DLPYSCRA---GSCSTCA 97 (145)
Q Consensus 72 tLLeal~~~G---i--~i~~~C~~---G~CgtC~ 97 (145)
=|++.+++.| + ...++|.. ..||+|.
T Consensus 163 eI~~la~~~g~~~~~~~~t~sC~~~~~~~CG~C~ 196 (201)
T TIGR00364 163 EIVQLADELGVLDLVIKLTYSCYAGGGEGCGKCP 196 (201)
T ss_pred HHHHHHHHcCCccccHhhCCcCCCcCCCCCCCCh
Confidence 4778888899 5 46788983 3577774
No 118
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=22.98 E-value=79 Score=25.41 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.6
Q ss_pred eEEEEecCCCcHHHHHHHcCCCCC
Q 032230 62 EQEIECPDDTYILDAAEDAGIDLP 85 (145)
Q Consensus 62 ~~~~~v~~g~tLLeal~~~Gi~i~ 85 (145)
-+++.|+.|.||....+++++++.
T Consensus 159 wqsy~V~~G~TLaQlFRdn~Lpit 182 (242)
T COG3061 159 WQSYTVPQGKTLAQLFRDNNLPIT 182 (242)
T ss_pred ceeEEecCCccHHHHHhccCCChH
Confidence 468999999999999999999863
No 119
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=1.2e+02 Score=26.74 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=24.2
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGIDLPY 86 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~ 86 (145)
.|.++ | .+++++.|.||-||++..|...+-
T Consensus 3 ~V~Vn---G-eev~lp~gsTlrdalea~ga~y~e 32 (512)
T COG4070 3 SVEVN---G-EEVTLPAGSTLRDALEASGASYIE 32 (512)
T ss_pred EEEEC---C-eEecCCCcchHHHHHHhcCCcccC
Confidence 45652 4 589999999999999999987654
No 120
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=21.26 E-value=77 Score=25.15 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=17.0
Q ss_pred cHHHHHHHcC-CC----CCCCCCCc----cccCCe
Q 032230 72 YILDAAEDAG-ID----LPYSCRAG----SCSTCA 97 (145)
Q Consensus 72 tLLeal~~~G-i~----i~~~C~~G----~CgtC~ 97 (145)
-|.+.+.+.| ++ .-++|..| .||+|-
T Consensus 167 eI~~l~~~lg~v~~~~~~T~SCy~g~~g~~CG~C~ 201 (231)
T PRK11106 167 ETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCA 201 (231)
T ss_pred HHHHHHHHcCCcccccCceeeccCcCCCCCCCCCH
Confidence 3666777888 54 46789853 566664
No 121
>TIGR01877 cas_cas6 CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.
Probab=21.20 E-value=1.2e+02 Score=22.24 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=26.4
Q ss_pred EEEEecCCC-cHHHHHHHcCCCCCCCCCCccc
Q 032230 63 QEIECPDDT-YILDAAEDAGIDLPYSCRAGSC 93 (145)
Q Consensus 63 ~~~~v~~g~-tLLeal~~~Gi~i~~~C~~G~C 93 (145)
..+.+.... .||+.+...|+....+.|.|.|
T Consensus 167 ~~~~l~g~~~~ll~~~~~~GlG~kts~GfG~v 198 (199)
T TIGR01877 167 GVFRIKGDPEKLLKFAYYAGLGEKTSLGFGMV 198 (199)
T ss_pred EEEEEcCCHHHHHHHHHHhCCCcccCCCCccc
Confidence 356777777 7999999999999999998876
No 122
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=21.04 E-value=2.3e+02 Score=18.04 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHHH----HHcCCCCC
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDAA----EDAGIDLP 85 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLeal----~~~Gi~i~ 85 (145)
++|+|....| ...+++++..|+.+.= .+.|++..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~ 40 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPE 40 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChH
Confidence 4677765434 5557889999987643 33455543
No 123
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=20.93 E-value=2e+02 Score=17.81 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=17.0
Q ss_pred EEEEECCCCeEEEEecCCCcHHHH
Q 032230 53 KVKLITPEGEQEIECPDDTYILDA 76 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLea 76 (145)
+|+|....+..++++++..|+-+.
T Consensus 2 ~i~vk~~~g~~~l~v~~~~TV~~l 25 (71)
T cd01808 2 KVTVKTPKDKEEIEIAEDASVKDF 25 (71)
T ss_pred EEEEEcCCCCEEEEECCCChHHHH
Confidence 455555556567899999998864
No 124
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=20.28 E-value=2.2e+02 Score=18.79 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHcCCCCC
Q 032230 63 QEIECPDDTYILDAAEDAGIDLP 85 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i~ 85 (145)
..+.+.++.||-+..++.|++..
T Consensus 25 ~~~~~~~~~tvkd~IEsLGVP~t 47 (81)
T PF14451_consen 25 FTHPFDGGATVKDVIESLGVPHT 47 (81)
T ss_pred eEEecCCCCcHHHHHHHcCCChH
Confidence 45678899999999999999864
No 125
>smart00257 LysM Lysin motif.
Probab=20.12 E-value=1.4e+02 Score=15.02 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.2
Q ss_pred EEecCCCcHHHHHHHcCCCC
Q 032230 65 IECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 65 ~~v~~g~tLLeal~~~Gi~i 84 (145)
+.+.+|+|+-..+.+.|+..
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~ 21 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISV 21 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCH
Confidence 45778889998888877653
Done!