Query 032230
Match_columns 145
No_of_seqs 269 out of 1361
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1czp_A Ferredoxin I; [2Fe-2S] 99.9 9.6E-27 3.3E-31 160.5 11.0 95 51-145 2-98 (98)
2 1frr_A Ferredoxin I; electron 99.9 1.4E-26 4.7E-31 158.4 10.4 94 52-145 2-95 (95)
3 1awd_A Ferredoxin; electron tr 99.9 8.3E-27 2.8E-31 159.7 9.3 94 52-145 1-94 (94)
4 1a70_A Ferredoxin; iron-sulfur 99.9 1E-26 3.4E-31 160.3 9.1 95 51-145 2-96 (97)
5 1iue_A Ferredoxin; electron tr 99.9 1.1E-26 3.9E-31 160.2 7.3 95 51-145 2-96 (98)
6 1frd_A Heterocyst [2Fe-2S] fer 99.9 4.3E-26 1.5E-30 157.0 10.1 94 51-144 2-97 (98)
7 1wri_A Ferredoxin II, ferredox 99.9 5.5E-26 1.9E-30 155.4 9.1 92 52-144 2-93 (93)
8 1jq4_A Methane monooxygenase c 99.9 6.7E-25 2.3E-29 151.1 5.3 91 51-141 4-97 (98)
9 1doi_A 2Fe-2S ferredoxin; halo 99.9 3.9E-24 1.3E-28 154.8 5.0 113 26-140 3-117 (128)
10 2pia_A Phthalate dioxygenase r 99.9 4.4E-23 1.5E-27 167.3 11.2 106 24-138 215-321 (321)
11 3lxf_A Ferredoxin; iron, iron- 99.9 5.4E-24 1.8E-28 148.7 3.6 90 53-142 2-104 (104)
12 3hui_A Ferredoxin; cytochrome 99.9 9.1E-24 3.1E-28 152.6 4.2 95 49-143 19-126 (126)
13 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 8.7E-23 3E-27 143.9 7.8 92 52-143 2-105 (113)
14 2y5c_A Adrenodoxin-like protei 99.9 1.6E-23 5.3E-28 147.0 3.2 92 51-142 5-108 (109)
15 1xlq_A Putidaredoxin, PDX; [2F 99.9 4E-23 1.4E-27 144.0 5.0 90 53-142 2-105 (106)
16 2bt6_A Adrenodoxin 1; rutheniu 99.9 3.9E-23 1.3E-27 144.7 3.5 89 51-139 6-108 (108)
17 1uwm_A Ferredoxin VI, FDVI; el 99.9 4.7E-23 1.6E-27 143.7 3.7 90 53-142 2-105 (106)
18 1b9r_A Protein (terpredoxin); 99.9 2E-23 6.9E-28 145.3 1.5 89 53-141 2-104 (105)
19 1krh_A Benzoate 1,2-dioxygenas 99.9 8.4E-22 2.9E-26 160.2 10.3 93 49-141 1-98 (338)
20 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 9E-22 3.1E-26 138.4 7.7 91 52-142 2-104 (111)
21 2wlb_A ETP1-FD, electron trans 99.9 4.8E-22 1.6E-26 137.9 5.8 89 51-139 3-103 (103)
22 3zyy_X Iron-sulfur cluster bin 99.8 2E-21 6.8E-26 171.0 10.4 94 49-144 1-95 (631)
23 1l5p_A Ferredoxin; [2Fe-2S] cl 99.8 1.7E-20 5.9E-25 128.1 4.8 82 54-137 3-92 (93)
24 3n9z_C Adrenodoxin; cytochrome 99.8 1.2E-21 4E-26 140.9 -2.8 94 49-142 3-110 (123)
25 3i9v_3 NADH-quinone oxidoreduc 99.0 6.2E-10 2.1E-14 100.0 6.2 86 52-141 2-98 (783)
26 1t3q_A Quinoline 2-oxidoreduct 98.9 3.7E-09 1.3E-13 79.1 6.4 67 51-137 11-81 (168)
27 1kf6_B Fumarate reductase iron 98.8 8E-09 2.7E-13 80.5 5.9 58 63-138 26-92 (243)
28 3c8y_A Iron hydrogenase 1; dit 98.7 1.9E-08 6.6E-13 87.6 6.7 68 52-140 2-76 (574)
29 2bs2_B Quinol-fumarate reducta 98.6 4E-08 1.4E-12 76.5 5.6 52 63-132 26-83 (241)
30 3hrd_D Nicotinate dehydrogenas 98.5 2.6E-07 8.8E-12 68.8 6.7 47 52-100 6-54 (160)
31 1rm6_C 4-hydroxybenzoyl-COA re 98.4 3.2E-07 1.1E-11 68.2 6.4 61 52-132 5-67 (161)
32 1n62_A Carbon monoxide dehydro 98.4 4.5E-07 1.5E-11 67.8 7.0 47 52-100 6-54 (166)
33 1ffv_A CUTS, iron-sulfur prote 98.4 5.3E-07 1.8E-11 67.2 7.1 47 52-100 6-54 (163)
34 2wdq_B Succinate dehydrogenase 98.3 4.5E-07 1.5E-11 70.3 4.3 41 63-104 23-70 (238)
35 2h88_B Succinate dehydrogenase 98.1 1.7E-06 5.9E-11 67.8 4.6 57 63-137 33-100 (252)
36 3vr8_B Iron-sulfur subunit of 97.8 3.7E-05 1.3E-09 61.7 6.1 41 63-104 57-104 (282)
37 3nvw_A Xanthine dehydrogenase/ 97.5 9.7E-05 3.3E-09 55.0 4.4 48 52-101 5-55 (164)
38 2w3s_A Xanthine dehydrogenase; 97.5 0.00016 5.4E-09 61.6 5.9 47 52-100 3-51 (462)
39 1vlb_A Aldehyde oxidoreductase 97.4 0.00023 8E-09 65.0 7.0 48 51-100 3-52 (907)
40 1dgj_A Aldehyde oxidoreductase 97.3 0.00028 9.7E-09 64.5 6.0 48 51-100 3-52 (907)
41 1y56_A Hypothetical protein PH 96.6 0.0029 9.8E-08 53.4 5.7 46 51-100 15-66 (493)
42 3unc_A Xanthine dehydrogenase/ 95.9 0.0078 2.7E-07 57.1 5.0 36 66-101 19-56 (1332)
43 2gag_A Heterotetrameric sarcos 95.2 0.042 1.4E-06 50.2 7.2 53 45-101 16-79 (965)
44 3zyv_A AOH1; oxidoreductase, m 93.4 0.085 2.9E-06 50.1 5.2 35 67-101 24-60 (1335)
45 3u7z_A Putative metal binding 86.1 1.4 4.9E-05 29.8 5.1 32 49-81 6-40 (101)
46 2l32_A Small archaeal modifier 73.1 4.6 0.00016 25.4 3.9 33 52-85 3-35 (74)
47 1ep3_B Dihydroorotate dehydrog 71.1 2.4 8.3E-05 32.1 2.7 27 73-100 206-238 (262)
48 1ryj_A Unknown; beta/alpha pro 65.8 15 0.0005 22.4 5.1 32 52-83 5-36 (70)
49 3ny5_A Serine/threonine-protei 64.8 8.5 0.00029 25.8 3.9 49 49-102 11-60 (96)
50 1c1y_B Proto-onkogene serine/t 60.3 13 0.00043 23.9 4.0 44 54-102 4-48 (77)
51 2k02_A Ferrous iron transport 57.6 4.7 0.00016 26.4 1.7 26 72-97 35-65 (87)
52 1wxm_A A-RAF proto-oncogene se 54.7 13 0.00046 24.3 3.5 44 53-101 9-53 (86)
53 1xn7_A Hypothetical protein YH 52.0 8.3 0.00028 24.5 2.1 26 72-97 35-65 (78)
54 2l05_A Serine/threonine-protei 51.6 20 0.00069 23.9 4.0 40 53-101 19-63 (95)
55 2hj1_A Hypothetical protein; s 51.0 17 0.00057 24.1 3.6 35 49-83 12-48 (97)
56 3kdv_A DDRB, DNA damage respon 49.7 17 0.00057 26.7 3.6 31 51-81 7-38 (184)
57 2al3_A TUG long isoform; TUG U 49.4 18 0.00061 23.9 3.5 31 53-83 11-46 (90)
58 1rrb_A RAF-1 RBD, RAF proto-on 47.2 28 0.00094 23.7 4.2 40 53-101 20-64 (107)
59 2kmm_A Guanosine-3',5'-BIS(dip 45.2 23 0.00078 21.1 3.4 30 52-84 3-32 (73)
60 1e0g_A Membrane-bound lytic mu 44.8 16 0.00055 19.8 2.4 21 64-84 4-24 (48)
61 1wx7_A Ubiquilin 3; ubiquitin- 44.3 55 0.0019 21.1 5.5 27 51-77 17-43 (106)
62 1tyg_B YJBS; alpha beta barrel 44.0 19 0.00066 23.3 3.0 29 51-83 20-49 (87)
63 1wx8_A Riken cDNA 4931431F19; 43.9 58 0.002 20.4 5.4 35 50-84 16-54 (96)
64 2k5p_A THis protein, thiamine- 43.2 24 0.00083 22.1 3.3 27 53-83 2-30 (78)
65 1uh6_A Ubiquitin-like 5; beta- 41.6 68 0.0023 21.2 5.5 38 49-86 26-68 (100)
66 3hvz_A Uncharacterized protein 41.2 39 0.0013 21.2 4.1 31 53-84 7-37 (78)
67 3kwl_A Uncharacterized protein 41.0 36 0.0012 28.8 5.0 37 63-107 45-81 (514)
68 3plu_A Ubiquitin-like modifier 38.7 48 0.0016 21.8 4.3 35 50-84 20-59 (93)
69 2kl0_A Putative thiamin biosyn 37.2 36 0.0012 21.0 3.4 27 53-84 2-28 (73)
70 1v86_A DNA segment, CHR 7, way 35.5 78 0.0027 20.0 5.0 35 51-85 17-55 (95)
71 3p42_A Predicted protein; beta 33.1 24 0.00082 26.9 2.4 34 49-82 1-34 (236)
72 2uyz_B Small ubiquitin-related 32.8 71 0.0024 19.0 4.3 36 49-84 1-41 (79)
73 1wf9_A NPL4 family protein; be 32.8 87 0.003 20.3 5.0 34 52-85 8-46 (107)
74 2djp_A Hypothetical protein SB 32.1 24 0.00082 21.5 1.9 22 63-84 16-37 (77)
75 1f0z_A THis protein; ubiquitin 31.8 33 0.0011 20.4 2.5 27 53-83 2-28 (66)
76 1wwt_A Threonyl-tRNA synthetas 31.3 49 0.0017 20.6 3.4 32 52-86 12-44 (88)
77 2wtp_A ORF131 protein, CZCE; m 29.3 3.2 0.00011 29.4 -2.9 33 32-73 49-81 (131)
78 1v2y_A 3300001G02RIK protein; 28.3 87 0.003 20.7 4.3 25 52-76 8-33 (105)
79 1wgd_A Homocysteine-responsive 27.6 72 0.0025 19.9 3.8 28 49-76 5-35 (93)
80 1v6e_A Cytoskeleton-associated 27.1 87 0.003 19.7 4.1 28 49-76 5-34 (95)
81 2klc_A Ubiquilin-1; ubiquitin- 25.1 1.1E+02 0.0037 19.6 4.3 36 49-84 23-62 (101)
82 2bwf_A Ubiquitin-like protein 24.8 1E+02 0.0034 18.0 3.9 26 52-77 5-30 (77)
83 3mtn_B UBA80, ubcep1, ubiquiti 24.7 1.2E+02 0.004 18.0 4.4 68 52-130 4-76 (85)
84 1wh3_A 59 kDa 2'-5'-oligoadeny 24.1 1.1E+02 0.0037 18.5 4.0 70 51-131 7-81 (87)
85 2pg3_A Queuosine biosynthesis 23.4 38 0.0013 24.8 2.0 26 71-96 167-201 (232)
86 2hj8_A Interferon-induced 17 k 23.1 1.1E+02 0.0038 18.8 4.0 68 52-131 5-78 (88)
87 2kan_A Uncharacterized protein 22.9 1.3E+02 0.0046 18.9 4.4 25 52-76 16-40 (94)
88 1yqb_A Ubiquilin 3; structural 22.5 1.3E+02 0.0044 19.2 4.3 33 51-83 22-58 (100)
89 4a1k_A Putative L, D-transpept 22.4 75 0.0026 22.5 3.3 21 63-83 3-23 (165)
90 3phx_B Ubiquitin-like protein 22.2 1.3E+02 0.0045 17.7 4.4 33 52-84 5-42 (79)
91 1wgg_A Ubiquitin carboxyl-term 22.1 91 0.0031 19.8 3.4 35 51-85 7-46 (96)
92 3j21_O 50S ribosomal protein L 21.8 42 0.0014 25.3 1.9 19 71-89 118-136 (203)
93 2wyq_A HHR23A, UV excision rep 20.9 1.4E+02 0.0049 17.7 4.2 25 52-76 6-31 (85)
No 1
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.94 E-value=9.6e-27 Score=160.51 Aligned_cols=95 Identities=72% Similarity=1.208 Sum_probs=87.9
Q ss_pred eeEEEEECCCC--eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230 51 TYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA 128 (145)
Q Consensus 51 ~~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~ 128 (145)
.++|+|..+++ +++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 81 (98)
T 1czp_A 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeC
Confidence 47889875554 5899999999999999999999999999999999999999999998888889988888999999999
Q ss_pred EECCCeEEEeCCCCCCC
Q 032230 129 YPTSDVTVETHKDEEMS 145 (145)
Q Consensus 129 ~~~~dl~I~~~~e~~l~ 145 (145)
++.+|++|+++++++||
T Consensus 82 ~~~~d~~v~~~~~~~~~ 98 (98)
T 1czp_A 82 YPTSDVVIQTHKEEDLY 98 (98)
T ss_dssp EESSCEEEECCCTTTTC
T ss_pred EECCCEEEEeccccccC
Confidence 99999999999999987
No 2
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.94 E-value=1.4e-26 Score=158.37 Aligned_cols=94 Identities=63% Similarity=1.108 Sum_probs=86.5
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT 131 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 131 (145)
++|+|..+++.++|++++|+|||++++++|+++|+.|+.|.||+|+|+|.+|.+++.+...|++++.++|+||+||+++.
T Consensus 2 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~ 81 (95)
T 1frr_A 2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE 81 (95)
T ss_dssp EEEEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred eEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEEC
Confidence 67888634444789999999999999999999999999999999999999999998888899998889999999999999
Q ss_pred CCeEEEeCCCCCCC
Q 032230 132 SDVTVETHKDEEMS 145 (145)
Q Consensus 132 ~dl~I~~~~e~~l~ 145 (145)
+|++|++++++++|
T Consensus 82 ~~~~v~~~~~~~~~ 95 (95)
T 1frr_A 82 SDLVIETHKEEELF 95 (95)
T ss_dssp SCEEEECCCTTTTC
T ss_pred CCEEEEEcchhhcC
Confidence 99999999999887
No 3
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.94 E-value=8.3e-27 Score=159.70 Aligned_cols=94 Identities=71% Similarity=1.225 Sum_probs=86.0
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT 131 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 131 (145)
|+|+|..+++.++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++.
T Consensus 1 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~ 80 (94)
T 1awd_A 1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT 80 (94)
T ss_dssp CEEEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES
T ss_pred CEEEEEeCCCcEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEEC
Confidence 46777644544789999999999999999999999999999999999999999998888899988889999999999999
Q ss_pred CCeEEEeCCCCCCC
Q 032230 132 SDVTVETHKDEEMS 145 (145)
Q Consensus 132 ~dl~I~~~~e~~l~ 145 (145)
+|++|++++++++|
T Consensus 81 ~d~~i~~~~~~~~~ 94 (94)
T 1awd_A 81 SDVTILTHQEAALY 94 (94)
T ss_dssp SCEEEECCCGGGGC
T ss_pred CCEEEEecchhccC
Confidence 99999999998887
No 4
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.94 E-value=1e-26 Score=160.25 Aligned_cols=95 Identities=71% Similarity=1.258 Sum_probs=86.9
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP 130 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 130 (145)
.++|+|..+++.++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~ 81 (97)
T 1a70_A 2 AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYP 81 (97)
T ss_dssp EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEE
T ss_pred eEEEEEEeCCceEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEE
Confidence 47888864454478999999999999999999999999999999999999999999888889998888899999999999
Q ss_pred CCCeEEEeCCCCCCC
Q 032230 131 TSDVTVETHKDEEMS 145 (145)
Q Consensus 131 ~~dl~I~~~~e~~l~ 145 (145)
.+|++|++++++++|
T Consensus 82 ~~d~~v~~~~~~~~~ 96 (97)
T 1a70_A 82 VSDVTIETHKKEELT 96 (97)
T ss_dssp SSCEEEECCCGGGCC
T ss_pred CCCEEEEeCchhhcc
Confidence 999999999988876
No 5
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.93 E-value=1.1e-26 Score=160.25 Aligned_cols=95 Identities=53% Similarity=1.039 Sum_probs=85.8
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP 130 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 130 (145)
.++|+|..+++.++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~ 81 (98)
T 1iue_A 2 FYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYP 81 (98)
T ss_dssp EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred cEEEEEEeCCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEE
Confidence 47888875454478999999999999999999999999999999999999999999888889998888999999999999
Q ss_pred CCCeEEEeCCCCCCC
Q 032230 131 TSDVTVETHKDEEMS 145 (145)
Q Consensus 131 ~~dl~I~~~~e~~l~ 145 (145)
.+|++|++++++.+|
T Consensus 82 ~~d~~i~~~~~~~~~ 96 (98)
T 1iue_A 82 KSDCVIETHKEDELH 96 (98)
T ss_dssp SSCEEEECCCHHHHH
T ss_pred CCCeEEEeCChHhhc
Confidence 999999998876554
No 6
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.93 E-value=4.3e-26 Score=156.97 Aligned_cols=94 Identities=50% Similarity=0.975 Sum_probs=86.2
Q ss_pred eeEEEEECCCC--eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230 51 TYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA 128 (145)
Q Consensus 51 ~~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~ 128 (145)
.++|+|..+++ +++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|++++.++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~ 81 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence 47888875454 6899999999999999999999999999999999999999999998888899988888999999999
Q ss_pred EECCCeEEEeCCCCCC
Q 032230 129 YPTSDVTVETHKDEEM 144 (145)
Q Consensus 129 ~~~~dl~I~~~~e~~l 144 (145)
++.+|++|+++.+++|
T Consensus 82 ~~~~d~~v~~~~~~~~ 97 (98)
T 1frd_A 82 YPRSNCTIKTHQEPYL 97 (98)
T ss_dssp EESSSEEEECCCGGGC
T ss_pred EECCCEEEEecchhhc
Confidence 9999999999988766
No 7
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.93 E-value=5.5e-26 Score=155.42 Aligned_cols=92 Identities=55% Similarity=1.044 Sum_probs=84.2
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT 131 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 131 (145)
++|+|..+++.++|++++|+|||++++++| .+++.|+.|.||+|+|+|++|.+++.+...|++++.++||||+||+++.
T Consensus 2 ~~V~~~~~~~~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~ 80 (93)
T 1wri_A 2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE 80 (93)
T ss_dssp EEEEEEETTEEEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred EEEEEEECCCeEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEEC
Confidence 678886455457899999999999999999 9999999999999999999999998888899988889999999999999
Q ss_pred CCeEEEeCCCCCC
Q 032230 132 SDVTVETHKDEEM 144 (145)
Q Consensus 132 ~dl~I~~~~e~~l 144 (145)
+|++|+++++++|
T Consensus 81 ~d~~v~~~~~~~~ 93 (93)
T 1wri_A 81 SDVVIETHKEDEL 93 (93)
T ss_dssp SCEEEECCCGGGC
T ss_pred CCEEEEecccccC
Confidence 9999999988765
No 8
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.91 E-value=6.7e-25 Score=151.11 Aligned_cols=91 Identities=30% Similarity=0.539 Sum_probs=80.8
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccC--CCCCCCChhcccCCeEEeEE
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ--SDGSFLEDDQIDAGYVLTCV 127 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq 127 (145)
+++|+|..+++ +++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++ .+...|++.++++|+||+||
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq 83 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCR 83 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTT
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEee
Confidence 57888863333 6789999999999999999999999999999999999999999876 46678888888899999999
Q ss_pred eEECCCeEEEeCCC
Q 032230 128 AYPTSDVTVETHKD 141 (145)
Q Consensus 128 ~~~~~dl~I~~~~e 141 (145)
+++.+|++|+++.+
T Consensus 84 ~~~~~d~~v~~~~~ 97 (98)
T 1jq4_A 84 TYPKTDLEIELPYT 97 (98)
T ss_dssp CCSSCCSEEECSCC
T ss_pred CEECCCEEEEecCC
Confidence 99999999999764
No 9
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.89 E-value=3.9e-24 Score=154.79 Aligned_cols=113 Identities=29% Similarity=0.526 Sum_probs=88.1
Q ss_pred CCCceeeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCc
Q 032230 26 MPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSV 105 (145)
Q Consensus 26 ~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~ 105 (145)
...||+|.|+........++... ++++|+|. .++..++++++|+|||++++++|+++|+.|+.|.||+|+++|++|.+
T Consensus 3 ~~~~~~e~~~~~~~~~~~~~~f~-~m~~i~i~-~~g~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v 80 (128)
T 1doi_A 3 VEYLNYEVVDDNGWDMYDDDVFG-EASDMDLD-DEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDI 80 (128)
T ss_dssp EEEEEHHHHHHHTCCTTTSCHHH-HHHHSCCC-TTTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCE
T ss_pred eeEEEEEEecccccccccccccc-cccEEEEE-eCCcEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCc
Confidence 34689999966553211111111 13455663 45533899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChhc-ccCCeEEeEEeEECCC-eEEEeCC
Q 032230 106 DQSDGSFLEDDQ-IDAGYVLTCVAYPTSD-VTVETHK 140 (145)
Q Consensus 106 ~~~e~~~L~~~~-~~~g~rLaCq~~~~~d-l~I~~~~ 140 (145)
++.+...|++++ .++|+||+||+++.+| ++|++..
T Consensus 81 ~~~e~~~L~~~e~~~~g~rLaCq~~~~~d~i~i~~~~ 117 (128)
T 1doi_A 81 DMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNA 117 (128)
T ss_dssp EECCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEECG
T ss_pred CchhhccCCHhHhccCCEEEEEEeEEcCCeEEEEecC
Confidence 888888898755 6899999999999999 8887643
No 10
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.89 E-value=4.4e-23 Score=167.35 Aligned_cols=106 Identities=27% Similarity=0.540 Sum_probs=89.4
Q ss_pred cCCCCceeeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeC
Q 032230 24 KAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSG 103 (145)
Q Consensus 24 ~~~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G 103 (145)
++..+||+|.|+++..... . ...++|+|. +.+ ++|++++|+||||+++++|++++++|+.|.||+|+++|++|
T Consensus 215 ~~~~~i~~E~F~~~~~~~~-~----~~~~~v~~~-~~~-~~~~~~~~~~ll~a~~~~g~~~~~~C~~G~Cg~C~~~v~~G 287 (321)
T 2pia_A 215 WPSGTVHFESFGATNTNAR-E----NTPFTVRLS-RSG-TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSG 287 (321)
T ss_dssp SCTTCEEEECCCCCCCCCS-C----CCCEEEEET-TTC-CEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEES
T ss_pred CCHhhEEEEecCCCCCCCC-C----CccEEEEEe-CCC-eEEEECCCCcHHHHHHHcCCCCCCCCCCCCCCCCEEEEecC
Confidence 6688999999987642111 1 235889985 344 58999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCChhcccCCeEEeEEeEECCC-eEEEe
Q 032230 104 SVDQSDGSFLEDDQIDAGYVLTCVAYPTSD-VTVET 138 (145)
Q Consensus 104 ~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~ 138 (145)
++++.+ ..|++++. +|++|+||+++.+| ++|++
T Consensus 288 ~~~~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l 321 (321)
T 2pia_A 288 EADHRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL 321 (321)
T ss_dssp CEECCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred cccccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence 999876 57888777 99999999999998 88864
No 11
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.88 E-value=5.4e-24 Score=148.70 Aligned_cols=90 Identities=27% Similarity=0.448 Sum_probs=77.9
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccCC------CCCCCCh-hcccCCe
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQS------DGSFLED-DQIDAGY 122 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g~ 122 (145)
+|+|..++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|.++.. |...|+. +++++||
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~ 81 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHS 81 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTE
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCc
Confidence 678876666 5789999999999999999999 999999 9999999999999976531 3345665 6788999
Q ss_pred EEeEEeEECCC---eEEEeCCCC
Q 032230 123 VLTCVAYPTSD---VTVETHKDE 142 (145)
Q Consensus 123 rLaCq~~~~~d---l~I~~~~e~ 142 (145)
||+||+++.+| ++|++|+++
T Consensus 82 rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 82 RLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp EEGGGCBCCGGGTTCEEEECCCC
T ss_pred EEEeeCEEccCCCCEEEEecCCC
Confidence 99999999998 999999764
No 12
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.88 E-value=9.1e-24 Score=152.57 Aligned_cols=95 Identities=18% Similarity=0.344 Sum_probs=80.6
Q ss_pred eeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCcc------CCCCCCCC-hhcc
Q 032230 49 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVD------QSDGSFLE-DDQI 118 (145)
Q Consensus 49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~-~~~~ 118 (145)
..|++|+|..+++ .++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|++|+++ ..|...|+ .+++
T Consensus 19 ~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e~ 98 (126)
T 3hui_A 19 SHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV 98 (126)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSSC
T ss_pred CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhhc
Confidence 4568999985555 4789999999999999999999 999998 99999999999999743 12344676 3678
Q ss_pred cCCeEEeEEeEECCC---eEEEeCCCCC
Q 032230 119 DAGYVLTCVAYPTSD---VTVETHKDEE 143 (145)
Q Consensus 119 ~~g~rLaCq~~~~~d---l~I~~~~e~~ 143 (145)
++||||+||+++.+| ++|++|+++.
T Consensus 99 ~~g~RLaCQ~~~~~dldgl~V~lp~~~r 126 (126)
T 3hui_A 99 RPNSRLSCQIKVSNELDGLIVTTPERQR 126 (126)
T ss_dssp CTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred cCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence 899999999999998 9999998753
No 13
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.88 E-value=8.7e-23 Score=143.89 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=75.9
Q ss_pred eEEEEECCC----CeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC-----CCCCCChh-cccC
Q 032230 52 YKVKLITPE----GEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS-----DGSFLEDD-QIDA 120 (145)
Q Consensus 52 ~~Vti~~~~----~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~-----e~~~L~~~-~~~~ 120 (145)
++|+|...+ .+++|++++|+|||++++++||+||+.|+ .|.||+|+|+|++|..... +...|+.. ++++
T Consensus 2 ~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~ 81 (113)
T 3ah7_A 2 PLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLEA 81 (113)
T ss_dssp CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCCT
T ss_pred CEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccCC
Confidence 578886433 24789999999999999999999999998 7999999999999974432 22346654 6788
Q ss_pred CeEEeEEeEEC-CCeEEEeCCCCC
Q 032230 121 GYVLTCVAYPT-SDVTVETHKDEE 143 (145)
Q Consensus 121 g~rLaCq~~~~-~dl~I~~~~e~~ 143 (145)
|+||+||+++. +|++|+++.++.
T Consensus 82 g~rLaCq~~~~~~dl~v~~~~~~~ 105 (113)
T 3ah7_A 82 QSRLGCQVFVADEDLTIEIPKYSL 105 (113)
T ss_dssp TEEEGGGCBCCSSCEEEECCSCCC
T ss_pred CcEEeeeCEEeCCCEEEEECchhh
Confidence 99999999998 899999987643
No 14
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.87 E-value=1.6e-23 Score=147.01 Aligned_cols=92 Identities=21% Similarity=0.310 Sum_probs=76.1
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC------CCCCCCh-hcccCC
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS------DGSFLED-DQIDAG 121 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g 121 (145)
+++|+|..+++ .++|++++|+|||++++++||++|+.|+ .|.||+|+|+|.+|.++.. |...|+. .++++|
T Consensus 5 m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 84 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQEN 84 (109)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCTT
T ss_pred cEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCCC
Confidence 57899875555 4579999999999999999999999999 5999999999999964431 2345553 567899
Q ss_pred eEEeEEeEECCC---eEEEeCCCC
Q 032230 122 YVLTCVAYPTSD---VTVETHKDE 142 (145)
Q Consensus 122 ~rLaCq~~~~~d---l~I~~~~e~ 142 (145)
|||+||+++.+| ++|++++++
T Consensus 85 ~rLaCq~~~~~d~~~~~v~ip~~~ 108 (109)
T 2y5c_A 85 SRLGCQIVLTPELEGAEFTLPKIT 108 (109)
T ss_dssp EEEGGGCBCCGGGTTCEEECCSCC
T ss_pred cEeeEEeEEecCCCeEEEEecCCC
Confidence 999999999986 999998654
No 15
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.87 E-value=4e-23 Score=144.04 Aligned_cols=90 Identities=24% Similarity=0.406 Sum_probs=74.1
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCcc------CCCCCCCChhc-c-cCC
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVD------QSDGSFLEDDQ-I-DAG 121 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~~~~-~-~~g 121 (145)
+|+|..+++ .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|..+ ..+...|+..+ . ++|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN 81 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 678854444 4789999999999999999999 999996 89999999999999543 22334566554 6 889
Q ss_pred eEEeEEeEECC---CeEEEeCCCC
Q 032230 122 YVLTCVAYPTS---DVTVETHKDE 142 (145)
Q Consensus 122 ~rLaCq~~~~~---dl~I~~~~e~ 142 (145)
+||+||+++.+ |++|+++.++
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 82 SRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEeeeeeEeecCCCCEEEEecCcc
Confidence 99999999998 6999998764
No 16
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.87 E-value=3.9e-23 Score=144.66 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=73.9
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCC--CCCC-CccccCCeEEEEeCCccC------CCCCCCCh-hccc
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLP--YSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLED-DQID 119 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~ 119 (145)
+++|+|..+++ .++|++++|+|||++++++||+|+ +.|+ .|.||+|+|+|.+|.++. .|...|+. .+++
T Consensus 6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 85 (108)
T 2bt6_A 6 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 85 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccCC
Confidence 57899874554 568999999999999999999999 9998 699999999999995432 13345664 5678
Q ss_pred CCeEEeEEeEECC---CeEEEeC
Q 032230 120 AGYVLTCVAYPTS---DVTVETH 139 (145)
Q Consensus 120 ~g~rLaCq~~~~~---dl~I~~~ 139 (145)
+||||+||+++.+ |++|++|
T Consensus 86 ~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 86 DRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp TTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCcEeeEEEEecCCCCCEEEEcC
Confidence 9999999999998 5999875
No 17
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.87 E-value=4.7e-23 Score=143.65 Aligned_cols=90 Identities=28% Similarity=0.464 Sum_probs=74.5
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccC------CCCCCCChh-ccc-CC
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLEDD-QID-AG 121 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~-~g 121 (145)
+|+|..+++ .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|.++. .+...|+.. +++ +|
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT 81 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCCC
Confidence 678854454 3789999999999999999999 999996 899999999999995432 233466665 577 89
Q ss_pred eEEeEEeEECC---CeEEEeCCCC
Q 032230 122 YVLTCVAYPTS---DVTVETHKDE 142 (145)
Q Consensus 122 ~rLaCq~~~~~---dl~I~~~~e~ 142 (145)
+||+||+++.+ +++|+++.++
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 82 SRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEecccCEEccCCCCEEEEecCCC
Confidence 99999999998 6999998764
No 18
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.86 E-value=2e-23 Score=145.31 Aligned_cols=89 Identities=18% Similarity=0.436 Sum_probs=74.6
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCC------ccCCCCCCCC--hhcccCC
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGS------VDQSDGSFLE--DDQIDAG 121 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~------~~~~e~~~L~--~~~~~~g 121 (145)
+|+|..+++ .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|. ++..+...|+ ..++++|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG 81 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 678843444 4789999999999999999999 999999 799999999999994 3333445676 5678899
Q ss_pred eEEeEEeEECC---CeEEEeCCC
Q 032230 122 YVLTCVAYPTS---DVTVETHKD 141 (145)
Q Consensus 122 ~rLaCq~~~~~---dl~I~~~~e 141 (145)
|||+||+++.+ |++|+++.+
T Consensus 82 ~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 82 TRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp BSCGGGCCCCTTSTTEEEECCSC
T ss_pred cEeeeeCEecCCCCcEEEEecCC
Confidence 99999999998 799999864
No 19
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.86 E-value=8.4e-22 Score=160.15 Aligned_cols=93 Identities=30% Similarity=0.475 Sum_probs=82.4
Q ss_pred eeeeEEEEECCC-CeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccC----CCCCCCChhcccCCeE
Q 032230 49 MATYKVKLITPE-GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ----SDGSFLEDDQIDAGYV 123 (145)
Q Consensus 49 m~~~~Vti~~~~-~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~----~e~~~L~~~~~~~g~r 123 (145)
|++++|+|...+ .+++|++++|+||||+++++|+++++.|+.|.||+|+|+|++|+++. .+...|+++++++|+|
T Consensus 1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~ 80 (338)
T 1krh_A 1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV 80 (338)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence 557899997433 36789999999999999999999999999999999999999998876 3677899888999999
Q ss_pred EeEEeEECCCeEEEeCCC
Q 032230 124 LTCVAYPTSDVTVETHKD 141 (145)
Q Consensus 124 LaCq~~~~~dl~I~~~~e 141 (145)
|+||+++.+|++|+++.+
T Consensus 81 LaCq~~~~~~~~v~~~~~ 98 (338)
T 1krh_A 81 LACQCRPTSDAVFQIQAS 98 (338)
T ss_dssp ETTTCEESSSEEEEESSC
T ss_pred EEEeCEECCCeEEEEecc
Confidence 999999999999999765
No 20
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.85 E-value=9e-22 Score=138.39 Aligned_cols=91 Identities=25% Similarity=0.405 Sum_probs=73.8
Q ss_pred eEEEEECCC----CeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCC-----CCCCh-hcccC
Q 032230 52 YKVKLITPE----GEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDG-----SFLED-DQIDA 120 (145)
Q Consensus 52 ~~Vti~~~~----~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~-----~~L~~-~~~~~ 120 (145)
++|+|..++ .+++|++++|+|||++++++|+.+|+.|+ .|.||+|+|+|++|.+.+... ..|+. .+..+
T Consensus 2 ~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~ 81 (111)
T 1i7h_A 2 PKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEP 81 (111)
T ss_dssp CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCT
T ss_pred CEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccCC
Confidence 577776432 24789999999999999999999999995 999999999999998776432 22332 24568
Q ss_pred CeEEeEEeEEC-CCeEEEeCCCC
Q 032230 121 GYVLTCVAYPT-SDVTVETHKDE 142 (145)
Q Consensus 121 g~rLaCq~~~~-~dl~I~~~~e~ 142 (145)
|+||+||+++. +|++|+++.++
T Consensus 82 g~rLaCq~~~~~~dl~v~~~~~~ 104 (111)
T 1i7h_A 82 ESRLSCQARVTDEDLVVEIPRYT 104 (111)
T ss_dssp TEEETTTCBCCSSCEEEECCSCC
T ss_pred CcEEEEEEEEeCCCEEEEEChHH
Confidence 99999999996 89999998654
No 21
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=4.8e-22 Score=137.87 Aligned_cols=89 Identities=30% Similarity=0.405 Sum_probs=74.2
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC------CCCCCCh-hcccCC
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS------DGSFLED-DQIDAG 121 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g 121 (145)
.++|+|..+++ .++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|.+++. |...|+. .+.++|
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~g 82 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEET 82 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCTT
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCCC
Confidence 36888873344 4789999999999999999999999999 8999999999999976543 2224554 457889
Q ss_pred eEEeEEeEECCC---eEEEeC
Q 032230 122 YVLTCVAYPTSD---VTVETH 139 (145)
Q Consensus 122 ~rLaCq~~~~~d---l~I~~~ 139 (145)
+||+||+++.+| ++|++|
T Consensus 83 ~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 83 SRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp EEEGGGCBCCGGGTTEEEECC
T ss_pred cEeeEeeEeCCCCCcEEEEcC
Confidence 999999999999 999875
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.85 E-value=2e-21 Score=171.01 Aligned_cols=94 Identities=35% Similarity=0.673 Sum_probs=85.9
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEE
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCV 127 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq 127 (145)
|.|++|+|. +++ ++|++++|+|||++++++|++++++|+ .|.||+|+++|++|++++.+...|+++++++|+||+||
T Consensus 1 M~m~~V~~~-~sg-~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCq 78 (631)
T 3zyy_X 1 MAEYKVLFK-PDQ-KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQ 78 (631)
T ss_dssp --CEEEEEE-TTT-EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTT
T ss_pred CCceEEEEe-cCC-eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeee
Confidence 567999997 454 689999999999999999999999999 99999999999999999888888999899999999999
Q ss_pred eEECCCeEEEeCCCCCC
Q 032230 128 AYPTSDVTVETHKDEEM 144 (145)
Q Consensus 128 ~~~~~dl~I~~~~e~~l 144 (145)
+++.+|++|+++.++++
T Consensus 79 a~~~sDl~Ielp~~~~~ 95 (631)
T 3zyy_X 79 TYPESDLIIEIPFDSRL 95 (631)
T ss_dssp EEECSSEEEECCTTSSC
T ss_pred CEECCCEEEEecchhhh
Confidence 99999999999988764
No 23
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.81 E-value=1.7e-20 Score=128.08 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=66.7
Q ss_pred EEEECCCCeEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccCC---CCCCCChhcccCCeEEeEEe
Q 032230 54 VKLITPEGEQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQS---DGSFLEDDQIDAGYVLTCVA 128 (145)
Q Consensus 54 Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~---e~~~L~~~~~~~g~rLaCq~ 128 (145)
|+|...+..++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|.+.+. +...|+ +.++|+||+||+
T Consensus 3 v~i~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaCq~ 80 (93)
T 1l5p_A 3 ITAVKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLACAI 80 (93)
T ss_dssp EEEEETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGGGC
T ss_pred EEEEeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEeeEC
Confidence 444422335689999999999999999999 999999 9999999999999987643 334555 678999999999
Q ss_pred EECCC---eEEE
Q 032230 129 YPTSD---VTVE 137 (145)
Q Consensus 129 ~~~~d---l~I~ 137 (145)
++.+| ++|+
T Consensus 81 ~~~~d~~g~~v~ 92 (93)
T 1l5p_A 81 TLSGENDGAVFE 92 (93)
T ss_dssp EECGGGTTCEEE
T ss_pred EECCCCCceEEE
Confidence 99886 4554
No 24
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.80 E-value=1.2e-21 Score=140.92 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred eeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCC--CCCC-CccccCCeEEEEeCCcc-C-----CCCCCCCh-hc
Q 032230 49 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLP--YSCR-AGSCSTCAGKVVSGSVD-Q-----SDGSFLED-DQ 117 (145)
Q Consensus 49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~-~-----~e~~~L~~-~~ 117 (145)
+.+++|+|..++| .++|++++|+|||++++++||+++ +.|+ .|.||+|+|+|.+|..+ . .|..+|+. .+
T Consensus 3 ~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~ 82 (123)
T 3n9z_C 3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82 (123)
T ss_dssp ----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC---
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhccccc
Confidence 4568899876655 568999999999999999999999 9998 89999999999975322 1 13345553 45
Q ss_pred ccCCeEEeEEeEECC---CeEEEeCCCC
Q 032230 118 IDAGYVLTCVAYPTS---DVTVETHKDE 142 (145)
Q Consensus 118 ~~~g~rLaCq~~~~~---dl~I~~~~e~ 142 (145)
+.+++||+||+++.+ |++|++|.+.
T Consensus 83 ~~~~~RLaCQ~~v~~~ld~l~V~ip~~~ 110 (123)
T 3n9z_C 83 LTDRSRLGCQICLTKSMDNMTVRVPETV 110 (123)
T ss_dssp -----CBCC-------------------
T ss_pred ccCCeEEeeEeEEccCCCCEEEEECccc
Confidence 778999999999998 7999998764
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.96 E-value=6.2e-10 Score=100.02 Aligned_cols=86 Identities=24% Similarity=0.463 Sum_probs=60.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCC------CCccccCCeEEEEeCCccCCCCCCCChhc-----ccC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSC------RAGSCSTCAGKVVSGSVDQSDGSFLEDDQ-----IDA 120 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C------~~G~CgtC~v~v~~G~~~~~e~~~L~~~~-----~~~ 120 (145)
++|+| +| +++++++|+|||++++++|+.||+.| ..|.|+.|.|+|..+..+......++++. ...
T Consensus 2 v~i~i---dg-~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~ 77 (783)
T 3i9v_3 2 VRVKV---ND-RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQP 77 (783)
T ss_dssp EEEEC---SS-CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCS
T ss_pred eEEEE---CC-EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCC
Confidence 56666 34 57999999999999999999999999 58999999999953322111111111110 124
Q ss_pred CeEEeEEeEECCCeEEEeCCC
Q 032230 121 GYVLTCVAYPTSDVTVETHKD 141 (145)
Q Consensus 121 g~rLaCq~~~~~dl~I~~~~e 141 (145)
+.+++|++.+..+|+|++..+
T Consensus 78 ~~~~aC~t~v~~gm~v~t~~~ 98 (783)
T 3i9v_3 78 KLAASCVTAVADGMVVDTLSD 98 (783)
T ss_dssp SCEETTTCBCCSSEEEESSSH
T ss_pred CcccccCCCCCCCCEEEECCH
Confidence 678999999999999998643
No 26
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.86 E-value=3.7e-09 Score=79.07 Aligned_cols=67 Identities=15% Similarity=0.382 Sum_probs=51.3
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHc-CCC-CCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDA-GID-LPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA 128 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi~-i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~ 128 (145)
.++|+|+ +..+++++++|+|||++|+++ |+. ++++|+.|.||+|.|.| +|. .+++|..
T Consensus 11 ~i~~~in--g~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~~ 70 (168)
T 1t3q_A 11 RISATIN--GKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCLT 70 (168)
T ss_dssp EEEEEET--TEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred eEEEEEC--CEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechhh
Confidence 3566662 335677789999999999996 997 89999999999999998 542 3677777
Q ss_pred EECC--CeEEE
Q 032230 129 YPTS--DVTVE 137 (145)
Q Consensus 129 ~~~~--dl~I~ 137 (145)
.+.. +..|.
T Consensus 71 ~~~~~~G~~v~ 81 (168)
T 1t3q_A 71 LAVQAEGCSIE 81 (168)
T ss_dssp BGGGGTTCEEE
T ss_pred HHHHhCCCeEE
Confidence 6654 44444
No 27
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.77 E-value=8e-09 Score=80.51 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=47.8
Q ss_pred EEEEecCCCcHHHHHHHcCC------CCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCC---
Q 032230 63 QEIECPDDTYILDAAEDAGI------DLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSD--- 133 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi------~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d--- 133 (145)
+++++++|+|||++|++.|+ ...++|+.|.||+|.|+| +|. .+|+|++.+...
T Consensus 26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~~ 87 (243)
T 1kf6_B 26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTDG 87 (243)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTTC
T ss_pred EEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCCc
Confidence 67888999999999999983 467789999999999996 553 388999888776
Q ss_pred eEEEe
Q 032230 134 VTVET 138 (145)
Q Consensus 134 l~I~~ 138 (145)
++|+-
T Consensus 88 ~~i~~ 92 (243)
T 1kf6_B 88 MKVEA 92 (243)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77753
No 28
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.70 E-value=1.9e-08 Score=87.61 Aligned_cols=68 Identities=25% Similarity=0.489 Sum_probs=57.3
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL 124 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 124 (145)
++|+| +| +++++++|+|||++++++|+.+|+.|+ .|.||.|.|+| +|. . .++
T Consensus 2 v~~~i---ng-~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~ 60 (574)
T 3c8y_A 2 KTIII---NG-VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVT 60 (574)
T ss_dssp EEEEE---TT-EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEE
T ss_pred eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-ccc
Confidence 45666 34 679999999999999999999999998 89999999998 221 2 789
Q ss_pred eEEeEECCCeEEEeCC
Q 032230 125 TCVAYPTSDVTVETHK 140 (145)
Q Consensus 125 aCq~~~~~dl~I~~~~ 140 (145)
+|++.+.++++|.+..
T Consensus 61 aC~t~v~~gm~V~T~~ 76 (574)
T 3c8y_A 61 ACDTLIEDGMIINTNS 76 (574)
T ss_dssp GGGCBCCTTCEEESSC
T ss_pred cCCCCcccceeEEecc
Confidence 9999999999998654
No 29
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.62 E-value=4e-08 Score=76.53 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=41.9
Q ss_pred EEEEecCCCcHHHHHHHcC------CCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC
Q 032230 63 QEIECPDDTYILDAAEDAG------IDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS 132 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~ 132 (145)
+++++++|+||||+|++.| +...++|+.|.||+|.|+| +|.. +|+|++.+..
T Consensus 26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~-----------------~~aC~~~~~~ 83 (241)
T 2bs2_B 26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLTKD 83 (241)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBGGG
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe-----------------ecchhCcHhH
Confidence 5677889999999999864 4567799999999999999 6643 4788877654
No 30
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.49 E-value=2.6e-07 Score=68.77 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=39.1
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v 100 (145)
++++| ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.|
T Consensus 6 i~~~v--NG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v 54 (160)
T 3hrd_D 6 INLNL--NGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF 54 (160)
T ss_dssp EEEEE--TTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE
Confidence 44554 3335678899999999999985 87 689999999999999998
No 31
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.45 E-value=3.2e-07 Score=68.16 Aligned_cols=61 Identities=23% Similarity=0.486 Sum_probs=46.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY 129 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~ 129 (145)
++++| ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.| +|. .+++|+..
T Consensus 5 i~~~v--NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~~ 64 (161)
T 1rm6_C 5 LRLTL--NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACSTL 64 (161)
T ss_dssp EEEEE--TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGSB
T ss_pred EEEEE--CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHHH
Confidence 45555 3335567778999999999986 76 589999999999999998 442 36777776
Q ss_pred ECC
Q 032230 130 PTS 132 (145)
Q Consensus 130 ~~~ 132 (145)
+..
T Consensus 65 ~~~ 67 (161)
T 1rm6_C 65 AHQ 67 (161)
T ss_dssp GGG
T ss_pred HHH
Confidence 654
No 32
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.44 E-value=4.5e-07 Score=67.80 Aligned_cols=47 Identities=11% Similarity=0.308 Sum_probs=38.3
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v 100 (145)
++++| ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.|
T Consensus 6 i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v 54 (166)
T 1n62_A 6 IELTI--NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL 54 (166)
T ss_dssp EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE
Confidence 45555 3445677889999999999984 66 479999999999999998
No 33
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.43 E-value=5.3e-07 Score=67.23 Aligned_cols=47 Identities=15% Similarity=0.368 Sum_probs=38.2
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v 100 (145)
++++| ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.|
T Consensus 6 i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v 54 (163)
T 1ffv_A 6 ITVNV--NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI 54 (163)
T ss_dssp EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE
Confidence 45555 3345677889999999999984 66 479999999999999998
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.30 E-value=4.5e-07 Score=70.29 Aligned_cols=41 Identities=27% Similarity=0.509 Sum_probs=35.2
Q ss_pred EEEEecC--CCcHHHHHHHcC-----CCCCCCCCCccccCCeEEEEeCC
Q 032230 63 QEIECPD--DTYILDAAEDAG-----IDLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 63 ~~~~v~~--g~tLLeal~~~G-----i~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
+++++++ |+|||++|++.| +...++|+.|.||+|.|+| +|.
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~ 70 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK 70 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE
Confidence 5677888 999999999987 5678899999999999998 443
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.14 E-value=1.7e-06 Score=67.83 Aligned_cols=57 Identities=25% Similarity=0.505 Sum_probs=43.5
Q ss_pred EEEEecC-CCcHHHHHHHcC------CCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC---
Q 032230 63 QEIECPD-DTYILDAAEDAG------IDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS--- 132 (145)
Q Consensus 63 ~~~~v~~-g~tLLeal~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~--- 132 (145)
+++++++ |+||||+|++.| +...++|+.|.||+|.|+| +|. .+|+|++.+..
T Consensus 33 ~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~~~g 94 (252)
T 2h88_B 33 YEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDPDLS 94 (252)
T ss_dssp EEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCCCTT
T ss_pred EEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhHcCC
Confidence 4567777 999999999986 2356689999999999996 443 47888887764
Q ss_pred -CeEEE
Q 032230 133 -DVTVE 137 (145)
Q Consensus 133 -dl~I~ 137 (145)
.++|+
T Consensus 95 ~~~~ie 100 (252)
T 2h88_B 95 KTTKIY 100 (252)
T ss_dssp SCEEEE
T ss_pred CceEEe
Confidence 25555
No 36
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.77 E-value=3.7e-05 Score=61.72 Aligned_cols=41 Identities=29% Similarity=0.576 Sum_probs=32.5
Q ss_pred EEEEecC-CCcHHHHHHHcCC------CCCCCCCCccccCCeEEEEeCC
Q 032230 63 QEIECPD-DTYILDAAEDAGI------DLPYSCRAGSCSTCAGKVVSGS 104 (145)
Q Consensus 63 ~~~~v~~-g~tLLeal~~~Gi------~i~~~C~~G~CgtC~v~v~~G~ 104 (145)
+++++++ |+|||++|++.+. ....+|+.|.||+|.|.| +|.
T Consensus 57 ~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~ 104 (282)
T 3vr8_B 57 FDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE 104 (282)
T ss_pred EEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence 5567777 9999999998654 345789999999999987 443
No 37
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=97.49 E-value=9.7e-05 Score=55.01 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=37.9
Q ss_pred eEEEEECCCCeE-EEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230 52 YKVKLITPEGEQ-EIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 52 ~~Vti~~~~~~~-~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~ 101 (145)
++++|+ +..+ +++++++++||++|++. |+ ....+|+.|.||.|.|.|-
T Consensus 5 i~~~vN--G~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd 55 (164)
T 3nvw_A 5 LVFFVN--GKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 55 (164)
T ss_dssp EEEEET--TEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEEEEC--CEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence 556662 2222 34688999999999985 87 6899999999999999985
No 38
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.46 E-value=0.00016 Score=61.64 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=37.9
Q ss_pred eEEEEECCCCeEEE-EecCCCcHHHHHHHcCC-CCCCCCCCccccCCeEEE
Q 032230 52 YKVKLITPEGEQEI-ECPDDTYILDAAEDAGI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 52 ~~Vti~~~~~~~~~-~v~~g~tLLeal~~~Gi-~i~~~C~~G~CgtC~v~v 100 (145)
+++++ ++..+++ +++++++||++|++.|+ ....+|+.|.||.|.|.|
T Consensus 3 ~~~~v--Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v 51 (462)
T 2w3s_A 3 IAFLL--NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMI 51 (462)
T ss_dssp EEEEE--TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence 45555 2335556 56899999999997687 589999999999999998
No 39
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.43 E-value=0.00023 Score=65.03 Aligned_cols=48 Identities=17% Similarity=0.403 Sum_probs=39.6
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v 100 (145)
++++++ ++..++++++++++||++|++ .|+ ...++|+.|.||.|.|.|
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v 52 (907)
T 1vlb_A 3 QKVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL 52 (907)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred eEEEEE--CCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE
Confidence 345555 344677888999999999998 477 789999999999999998
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=97.30 E-value=0.00028 Score=64.48 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=39.8
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKV 100 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v 100 (145)
++++++ ++..++++++++++||++|++ .|+ ...++|+.|.||.|.|.|
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v 52 (907)
T 1dgj_A 3 TKTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL 52 (907)
T ss_dssp EEECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE
Confidence 345555 344667899999999999998 477 689999999999999998
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.0029 Score=53.37 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=34.3
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCC---C-Ccc--ccCCeEEE
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSC---R-AGS--CSTCAGKV 100 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C---~-~G~--CgtC~v~v 100 (145)
+++++| +| +++++.+|+||+++++++|+++...| + .|. |+.|.|+|
T Consensus 15 ~v~~~~---dg-~~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v 66 (493)
T 1y56_A 15 KVTIYF---EG-KELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTV 66 (493)
T ss_dssp EEEEEE---TT-EEEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBS
T ss_pred eEEEEE---CC-EEEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEE
Confidence 466666 34 67999999999999999999652111 3 455 88899976
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=95.86 E-value=0.0078 Score=57.13 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=32.3
Q ss_pred EecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230 66 ECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 66 ~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~ 101 (145)
+++++++||+.|++. |+ ....+|+.|.||.|.|.|-
T Consensus 19 ~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~ 56 (1332)
T 3unc_A 19 NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 56 (1332)
T ss_dssp TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred cCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence 478999999999984 87 5899999999999999984
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=95.17 E-value=0.042 Score=50.23 Aligned_cols=53 Identities=9% Similarity=0.084 Sum_probs=41.0
Q ss_pred cccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCC-----------CCCccccCCeEEEE
Q 032230 45 RVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYS-----------CRAGSCSTCAGKVV 101 (145)
Q Consensus 45 ~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~-----------C~~G~CgtC~v~v~ 101 (145)
++..+.+++++| +| +++++.+|+||+++|+.+|+.+... |..|.|..|.+.+.
T Consensus 16 ~~~~~~~~~~~~---dG-~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~ 79 (965)
T 2gag_A 16 RINREEALSLTV---DG-AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS 79 (965)
T ss_dssp SSEEEEEEEEEE---TT-EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred ccCCCCeEEEEE---CC-EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence 333355666666 34 6899999999999999999975443 45688999999996
No 44
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=93.38 E-value=0.085 Score=50.11 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=31.0
Q ss_pred ecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230 67 CPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 67 v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~ 101 (145)
+++..|||+.|+.+ |+ .-...|+.|-||.|.|-|-
T Consensus 24 ~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~ 60 (1335)
T 3zyv_A 24 ADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS 60 (1335)
T ss_dssp CCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred CCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence 56899999999974 77 5889999999999999984
No 45
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=86.15 E-value=1.4 Score=29.79 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=24.9
Q ss_pred eeeeEEEEECCCC---eEEEEecCCCcHHHHHHHcC
Q 032230 49 MATYKVKLITPEG---EQEIECPDDTYILDAAEDAG 81 (145)
Q Consensus 49 m~~~~Vti~~~~~---~~~~~v~~g~tLLeal~~~G 81 (145)
++.++|+|...++ ...|. +++++|+++|..+.
T Consensus 6 ~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 5678899887655 23455 78999999999987
No 46
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=73.05 E-value=4.6 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=25.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLP 85 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~ 85 (145)
.+|++. .....++++++|.|+.|.+.+.|++..
T Consensus 3 v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 3 VTVEVV-GEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEECS-SSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEEe-CccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 566664 223556899999999999999999865
No 47
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=71.11 E-value=2.4 Score=32.09 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCC------CCCCCCccccCCeEEE
Q 032230 73 ILDAAEDAGIDL------PYSCRAGSCSTCAGKV 100 (145)
Q Consensus 73 LLeal~~~Gi~i------~~~C~~G~CgtC~v~v 100 (145)
+.+ +.+.|++. ...||.|.||.|.+..
T Consensus 206 v~~-l~~~gv~~~vs~e~~m~CG~G~C~~C~~~~ 238 (262)
T 1ep3_B 206 VAK-KYDQLERLYISMESRMACGIGACYACVEHD 238 (262)
T ss_dssp HHH-HTTTCSSEEEECCCCCSSSSSSSCTTEEEE
T ss_pred HHH-HHhCCCCEEEEecccccCcccccccCCccc
Confidence 444 55667753 3579999999999986
No 48
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=65.81 E-value=15 Score=22.44 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=24.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~ 83 (145)
.+|+++...+.++++++++.|+.+.+...|++
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~ 36 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGELEIP 36 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHHTTCC
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHHhCCC
Confidence 47888643335568899999999999998875
No 49
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=64.79 E-value=8.5 Score=25.80 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=32.2
Q ss_pred eeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEe
Q 032230 49 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVS 102 (145)
Q Consensus 49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~ 102 (145)
|+.-.|.+..|++ ...+++.+|.||-|++.++=- . ++-.+-.|.|....
T Consensus 11 ~~~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk-~----R~L~pe~C~Vy~~~ 60 (96)
T 3ny5_A 11 MQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALM-M----RGLIPECCAVYRIQ 60 (96)
T ss_dssp CSSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHH-T----TTCCGGGEEEEECC
T ss_pred hhhCEEEEECCCCceEEEEecCCcCHHHHHHHHHH-H----cCCChHHeEEEEcc
Confidence 5555666665776 456899999999998875400 0 12266778888653
No 50
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=60.32 E-value=13 Score=23.95 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=28.3
Q ss_pred EEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEe
Q 032230 54 VKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVS 102 (145)
Q Consensus 54 Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~ 102 (145)
|.+..|++ ...+++.+|+||-|++.++=-- ++=.+-.|.|....
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~-----R~L~pe~C~V~~~~ 48 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKV-----RGLQPECCAVFRLL 48 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHT-----TTCCGGGEEEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHH-----cCCCHHHeEEEEec
Confidence 33333666 4568999999999988754000 12367778888663
No 51
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.61 E-value=4.7 Score=26.39 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=19.9
Q ss_pred cHHHHHHHcCCC-----CCCCCCCccccCCe
Q 032230 72 YILDAAEDAGID-----LPYSCRAGSCSTCA 97 (145)
Q Consensus 72 tLLeal~~~Gi~-----i~~~C~~G~CgtC~ 97 (145)
..|+.+++.|.- .+.+|..|.|++|.
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~sgsC~sC~ 65 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCLSGSCKSCP 65 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSCSSSSSSCS
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCCCCC
Confidence 467888888883 24689888899883
No 52
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=54.67 E-value=13 Score=24.33 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=28.1
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEE
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~ 101 (145)
.|.++.|++ ...+++.+|+||-|++.++=- . ++-.+-.|.|...
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk-~----R~L~pe~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALK-V----RGLNQDCCVVYRL 53 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHH-T----TTCCSSSEEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHH-H----cCCCHHHeEEEEc
Confidence 344444665 556899999999988875400 0 1224677888765
No 53
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=52.02 E-value=8.3 Score=24.48 Aligned_cols=26 Identities=35% Similarity=0.742 Sum_probs=19.7
Q ss_pred cHHHHHHHcCCC-----CCCCCCCccccCCe
Q 032230 72 YILDAAEDAGID-----LPYSCRAGSCSTCA 97 (145)
Q Consensus 72 tLLeal~~~Gi~-----i~~~C~~G~CgtC~ 97 (145)
.-|+.+++.|.- -...|..|.|+.|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCLSGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCCCSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCCCCCCCCCC
Confidence 457888888884 34678888899994
No 54
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=51.62 E-value=20 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=28.1
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHHc----CCCCCCCCCCccccCCeEEEE
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAEDA----GIDLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~----Gi~i~~~C~~G~CgtC~v~v~ 101 (145)
.|.+..|++ ...+++.+|+||-|++.++ |+ .+-.|.|...
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L---------~pe~C~Vy~~ 63 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL---------IPECCAVYRI 63 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC---------CGGGEEEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHcEEEEc
Confidence 344444666 4568999999999988654 44 6777888865
No 55
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=50.97 E-value=17 Score=24.11 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=25.0
Q ss_pred eeeeEEEEECCCC--eEEEEecCCCcHHHHHHHcCCC
Q 032230 49 MATYKVKLITPEG--EQEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 49 m~~~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~ 83 (145)
|..+.|....++. ...+++++|.|+.+++++.|+.
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC
Confidence 3345555555553 2346788999999999999984
No 56
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=49.66 E-value=17 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.5
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHHHcC
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAG 81 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~G 81 (145)
|..|.|..+-| ..+++++.++.||+.++..|
T Consensus 7 ml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG 38 (184)
T 3kdv_A 7 MLHIEFITDLGAKVTVDVESADKLLDVQRQYG 38 (184)
T ss_dssp CEEEEEECTTCCEEEEEESSGGGHHHHHHHHH
T ss_pred eEEEEEecCCCceEEEecCCHHHHHHHHHHhh
Confidence 57888887766 66788899999999999754
No 57
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=49.37 E-value=18 Score=23.86 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=22.2
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHH----cCCC
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAED----AGID 83 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~----~Gi~ 83 (145)
.|++..+++ .+.+.+.++.+|.|++++ .|++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 455555555 677889999999987765 4664
No 58
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=47.20 E-value=28 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=28.6
Q ss_pred EEEEECCCC-eEEEEecCCCcHHHHHHHc----CCCCCCCCCCccccCCeEEEE
Q 032230 53 KVKLITPEG-EQEIECPDDTYILDAAEDA----GIDLPYSCRAGSCSTCAGKVV 101 (145)
Q Consensus 53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~----Gi~i~~~C~~G~CgtC~v~v~ 101 (145)
.|.+..|++ ...++|.+|.||-|++.++ |+ .+-.|.|...
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 64 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL---------QPECCAVFRL 64 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTC---------CTTTEEEEEC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHceeEEc
Confidence 355554665 5579999999999888654 44 4677888866
No 59
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=45.20 E-value=23 Score=21.12 Aligned_cols=30 Identities=33% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
++|++ ++|. .++++.|.|+++.+.+.+..+
T Consensus 3 i~i~~--p~g~-~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 3 VMVFT--PKGE-IKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp EEEEC--TTCC-EEEECTTCBHHHHHHHHCSHH
T ss_pred EEEEc--CCCC-EEEcCCCCcHHHHHHHHhhcc
Confidence 45555 4553 588999999999998765443
No 60
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=44.80 E-value=16 Score=19.84 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=18.4
Q ss_pred EEEecCCCcHHHHHHHcCCCC
Q 032230 64 EIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 64 ~~~v~~g~tLLeal~~~Gi~i 84 (145)
.+.+.+|+||-..+.+.|+.+
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp EEEECTTCCHHHHHHHHTCCH
T ss_pred EEEEcCCCcHHHHHHHHCcCH
Confidence 577899999999999998864
No 61
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.30 E-value=55 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=19.1
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHH
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAA 77 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal 77 (145)
+++|+|...++...+++....||.+.-
T Consensus 17 ~m~I~Vk~~~g~~~l~v~~~~TV~~LK 43 (106)
T 1wx7_A 17 LIKVTVKTPKDKEDFSVTDTCTIQQLK 43 (106)
T ss_dssp EEEEEEECSSCEEEEEEETTCCHHHHH
T ss_pred eEEEEEEeCCCcEEEEECCCCcHHHHH
Confidence 356666655556788999999987643
No 62
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=43.95 E-value=19 Score=23.26 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=22.1
Q ss_pred eeEEEEECCCCeEEEEecCC-CcHHHHHHHcCCC
Q 032230 51 TYKVKLITPEGEQEIECPDD-TYILDAAEDAGID 83 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g-~tLLeal~~~Gi~ 83 (145)
+++|+++ + ++++++++ .||.+.+...+++
T Consensus 20 ~M~I~vN---G-e~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 20 RHMLQLN---G-KDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp --CEEET---T-EEECCSSSCCBHHHHHHHTTCT
T ss_pred ceEEEEC---C-EEEECCCCCCcHHHHHHHhCCC
Confidence 3578883 4 57888998 9999999998875
No 63
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.90 E-value=58 Score=20.41 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=22.7
Q ss_pred eeeEEEEECCCCeEEEEecCCCcHHHHH----HHcCCCC
Q 032230 50 ATYKVKLITPEGEQEIECPDDTYILDAA----EDAGIDL 84 (145)
Q Consensus 50 ~~~~Vti~~~~~~~~~~v~~g~tLLeal----~~~Gi~i 84 (145)
.+++|+|...+...++++++..|+.+.= ...|++.
T Consensus 16 ~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 54 (96)
T 1wx8_A 16 RIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNA 54 (96)
T ss_dssp CEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCT
T ss_pred CcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 3466777655446778999999987643 2345553
No 64
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=43.15 E-value=24 Score=22.14 Aligned_cols=27 Identities=4% Similarity=0.122 Sum_probs=22.1
Q ss_pred EEEEECCCCeEEEEec--CCCcHHHHHHHcCCC
Q 032230 53 KVKLITPEGEQEIECP--DDTYILDAAEDAGID 83 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~--~g~tLLeal~~~Gi~ 83 (145)
+|+++ | ..++++ ++.||.+.+.+.|++
T Consensus 2 ~I~vN---G-e~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 2 NLTVN---G-KPSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp EEEET---T-EEEECSSCSCEEHHHHHHHHTCS
T ss_pred EEEEC---C-EEEEcCCCCCCcHHHHHHHcCCC
Confidence 57773 4 468888 899999999999987
No 65
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.59 E-value=68 Score=21.16 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=25.4
Q ss_pred eeeeEEEEECCCC-eEEEEecCCCcHHHH----HHHcCCCCCC
Q 032230 49 MATYKVKLITPEG-EQEIECPDDTYILDA----AEDAGIDLPY 86 (145)
Q Consensus 49 m~~~~Vti~~~~~-~~~~~v~~g~tLLea----l~~~Gi~i~~ 86 (145)
+.+++|+|+...| ..++++++..|+.+. ..+.|++..-
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~q 68 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNK 68 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGG
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH
Confidence 3456777775534 677999999998764 3345766443
No 66
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.21 E-value=39 Score=21.24 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=22.7
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
+|.+..|+|. .++.+.|.|.+|.+.+-+-.+
T Consensus 7 ~i~v~tP~G~-~~~lp~GaT~~D~A~~Ih~~l 37 (78)
T 3hvz_A 7 EVFVFTPKGD-VISLPIGSTVIDFAYAIHSAV 37 (78)
T ss_dssp EEEEECTTSC-EEEEETTCBHHHHHHHHCHHH
T ss_pred eEEEECCCCC-EEEecCCCCHHHHHHHhhhhh
Confidence 3455557774 689999999999998754444
No 67
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=41.04 E-value=36 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=26.1
Q ss_pred EEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccC
Q 032230 63 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~ 107 (145)
+++++.++.|+||+|..-. ...|+. +|.++| .|....
T Consensus 45 y~v~~~~~~~vLd~L~~ik---~l~fr~----sCam~I-NG~~~l 81 (514)
T 3kwl_A 45 YFLEYQEDQYLLDLLKQLK---GVSYSE----NIALKI-NQIAVF 81 (514)
T ss_dssp EEEECCTTCBHHHHHTTST---TCCCCS----SCCEEE-TTEEEC
T ss_pred EEEeCCCCCcHHHHHHHhh---hCeeec----cceEEE-CCEehh
Confidence 3466678999999998754 555666 787776 665543
No 68
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=38.65 E-value=48 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=23.7
Q ss_pred eeeEEEEECCCC-eEEEEecCCCcHHHH----HHHcCCCC
Q 032230 50 ATYKVKLITPEG-EQEIECPDDTYILDA----AEDAGIDL 84 (145)
Q Consensus 50 ~~~~Vti~~~~~-~~~~~v~~g~tLLea----l~~~Gi~i 84 (145)
.++.|.++...| ...+.+.+..||.+. +.+.|++.
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 346777775555 667899999999864 23456554
No 69
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=37.21 E-value=36 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=21.1
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i 84 (145)
+|+++ | ..+++ ++.||.+.+.+.|++.
T Consensus 2 ~I~vN---G-~~~e~-~~~Tl~~LL~~l~~~~ 28 (73)
T 2kl0_A 2 LVTIN---G-EQREV-QSASVAALMTELDCTG 28 (73)
T ss_dssp CEEET---T-EEECC-CCSBHHHHHHHTTCCS
T ss_pred EEEEC---C-EEEEc-CCCcHHHHHHHcCCCC
Confidence 46773 3 46778 8899999999999873
No 70
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.50 E-value=78 Score=20.04 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=22.3
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHH----HcCCCCC
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAE----DAGIDLP 85 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~----~~Gi~i~ 85 (145)
+++|+|...+..+++++++..|+.+.=. ..|++..
T Consensus 17 ~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~ 55 (95)
T 1v86_A 17 LVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPA 55 (95)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCST
T ss_pred eEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 3556665444466789999999876533 3566543
No 71
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=33.07 E-value=24 Score=26.92 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=25.8
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCC
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGI 82 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi 82 (145)
|..-+|++..++...++.+..|++|-+.+.++|+
T Consensus 1 ~~~~~v~v~~~g~~~~~~i~~~eRLsdll~ra~~ 34 (236)
T 3p42_A 1 MAQGMVTIYLPGEQQTLSVGPVENVAQLVTQPQL 34 (236)
T ss_dssp --CEEEEEECTTSSCEEEEEEESBHHHHHTCTTT
T ss_pred CCceeEEEEECCCceeEeeCCCCcHHHHHhhccC
Confidence 3345666665666667999999999999999994
No 72
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=32.84 E-value=71 Score=19.02 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=23.1
Q ss_pred eeeeEEEEECCCC-eEEEEecCCCcHHHHHH----HcCCCC
Q 032230 49 MATYKVKLITPEG-EQEIECPDDTYILDAAE----DAGIDL 84 (145)
Q Consensus 49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~----~~Gi~i 84 (145)
|..++|++...++ ...+++.+.+|+.+.-. +.|++.
T Consensus 1 m~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~ 41 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 41 (79)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 3446777775444 56788999999876433 356553
No 73
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.82 E-value=87 Score=20.33 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=23.5
Q ss_pred eEEEEECCCCeEEEEec-CCCcHHHHHH----HcCCCCC
Q 032230 52 YKVKLITPEGEQEIECP-DDTYILDAAE----DAGIDLP 85 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~-~g~tLLeal~----~~Gi~i~ 85 (145)
+.|+|..++|...++++ +..||.+.-. ..|++..
T Consensus 8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~ 46 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIH 46 (107)
T ss_dssp EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTT
T ss_pred EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcc
Confidence 45777767776679999 9999876543 3566543
No 74
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.07 E-value=24 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHcCCCC
Q 032230 63 QEIECPDDTYILDAAEDAGIDL 84 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~i 84 (145)
..+.|.+|+||...+.+.|+.+
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~ 37 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTM 37 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCH
T ss_pred EEEEECCCCcHHHHHHHHCcCH
Confidence 3577899999999999998865
No 75
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=31.80 E-value=33 Score=20.37 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=21.3
Q ss_pred EEEEECCCCeEEEEecCCCcHHHHHHHcCCC
Q 032230 53 KVKLITPEGEQEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~ 83 (145)
+|+++ + ++++++++.||.+.+...+++
T Consensus 2 ~i~vN---g-~~~~~~~~~tv~~ll~~l~~~ 28 (66)
T 1f0z_A 2 QILFN---D-QAMQCAAGQTVHELLEQLDQR 28 (66)
T ss_dssp CEEES---S-CEECCCTTCCHHHHHHHHTCC
T ss_pred EEEEC---C-EEEEcCCCCcHHHHHHHcCCC
Confidence 46773 3 468889999999999998865
No 76
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=31.29 E-value=49 Score=20.55 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=22.2
Q ss_pred eEEEEECCCCeEEEEecC-CCcHHHHHHHcCCCCCC
Q 032230 52 YKVKLITPEGEQEIECPD-DTYILDAAEDAGIDLPY 86 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~-g~tLLeal~~~Gi~i~~ 86 (145)
++|++ ++|. ..+++. |.|++|.+...+-.+..
T Consensus 12 i~I~l--pdG~-~~~~~~~~~T~~dia~~i~~~l~~ 44 (88)
T 1wwt_A 12 IKVTL--PDGK-QVDAESWKTTPYQIACGISQGLAD 44 (88)
T ss_dssp EEEEC--TTSC-EEEEETTTCCHHHHHHHSSTTTGG
T ss_pred EEEEE--CCCC-EEEcccCCCCHHHHHHHhhhcccc
Confidence 55666 5553 467777 89999999887555443
No 77
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=29.27 E-value=3.2 Score=29.45 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=16.2
Q ss_pred eeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcH
Q 032230 32 ALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYI 73 (145)
Q Consensus 32 e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tL 73 (145)
..||-..+.... .-+|.+. ++. +-|+|+.|||+
T Consensus 49 ~~fG~pa~aa~a-------sRTI~V~-m~~-k~InV~~GETV 81 (131)
T 2wtp_A 49 TLYGDPAGQSQA-------SRIIDVK-PGM-RYVNVDSGETV 81 (131)
T ss_dssp HTTEEEECGGGC-------SCEEECC-TTC-CEEEEETTCEE
T ss_pred cccCCcCCcccC-------ceEEEEc-cCC-eEEEecCCCEE
Confidence 358776532211 2245553 332 33677777663
No 78
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.30 E-value=87 Score=20.72 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=17.6
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHH
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDA 76 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLea 76 (145)
++|+|...++ ..++++++..|+.+.
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred EEEEEEecCCCEEEEEECCCChHHHH
Confidence 4666654444 667889999998753
No 79
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.64 E-value=72 Score=19.87 Aligned_cols=28 Identities=7% Similarity=0.015 Sum_probs=18.0
Q ss_pred eeeeEEEEECCCCe---EEEEecCCCcHHHH
Q 032230 49 MATYKVKLITPEGE---QEIECPDDTYILDA 76 (145)
Q Consensus 49 m~~~~Vti~~~~~~---~~~~v~~g~tLLea 76 (145)
|..++|+|...++. .++++++..|+.+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 44567777655442 45666699998764
No 80
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.06 E-value=87 Score=19.74 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=20.8
Q ss_pred eeeeEEEEECCCC--eEEEEecCCCcHHHH
Q 032230 49 MATYKVKLITPEG--EQEIECPDDTYILDA 76 (145)
Q Consensus 49 m~~~~Vti~~~~~--~~~~~v~~g~tLLea 76 (145)
|.+++|+|..... ..++++++..|+.+.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~l 34 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEF 34 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHH
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHH
Confidence 5567887775444 478999999998764
No 81
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=25.10 E-value=1.1e+02 Score=19.55 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=23.4
Q ss_pred eeeeEEEEECCCCeEEEEecCCCcHHHHHH----HcCCCC
Q 032230 49 MATYKVKLITPEGEQEIECPDDTYILDAAE----DAGIDL 84 (145)
Q Consensus 49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~----~~Gi~i 84 (145)
+..++|+|...+...++++++..|+.+.-. ..|++.
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 62 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHT 62 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 344677776554466789999999876432 346553
No 82
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=24.82 E-value=1e+02 Score=17.99 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=17.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHHH
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDAA 77 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLeal 77 (145)
++|+|...+...++++++..|+.+.-
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK 30 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFK 30 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHH
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHH
Confidence 56666652335678899999987643
No 83
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=24.67 E-value=1.2e+02 Score=18.03 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=35.8
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHHH----HHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeE
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDAA----EDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTC 126 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLeal----~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaC 126 (145)
++|.|...++ ...+++++..|+.+.- ...|+++... .-+..|.. ..+...|.+-.+.++..+-+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q----------rL~~~g~~-L~d~~tL~~~~i~~~~~l~l 72 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ----------RLIFAGKQ-LEDGRTLSDYNIQKWSTLFL 72 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC----------EEEETTEE-CCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHE----------EEEECCEE-CCCCCCHHHcCCCCCCEEEE
Confidence 4566654444 5678899999988643 3356554321 11123322 22334455545556666655
Q ss_pred EeEE
Q 032230 127 VAYP 130 (145)
Q Consensus 127 q~~~ 130 (145)
..+.
T Consensus 73 ~~r~ 76 (85)
T 3mtn_B 73 LLRL 76 (85)
T ss_dssp ECCC
T ss_pred EEEC
Confidence 5443
No 84
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.08 E-value=1.1e+02 Score=18.47 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=35.9
Q ss_pred eeEEEEECCCC-eEEEEecCCCcHHHHHH----HcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230 51 TYKVKLITPEG-EQEIECPDDTYILDAAE----DAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT 125 (145)
Q Consensus 51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~----~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 125 (145)
.++|++...++ ..++++++..|+.+.-. ..|++.... .-+..|.. ..+...|.+-.+.++..|-
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q----------rL~~~Gk~-L~d~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQ----------QLEFQGQV-LQDWLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTE----------EEEETTEE-CCSSSBHHHHTCCTTEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHE----------EEEECCEE-ccCCCCHHHCCCCCCCEEE
Confidence 34566654444 55788999999876433 345543211 11123322 2233345544455666665
Q ss_pred EEeEEC
Q 032230 126 CVAYPT 131 (145)
Q Consensus 126 Cq~~~~ 131 (145)
...+..
T Consensus 76 l~~~~~ 81 (87)
T 1wh3_A 76 LSKKKG 81 (87)
T ss_dssp EEECSC
T ss_pred EEEecc
Confidence 554443
No 85
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=23.44 E-value=38 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=18.2
Q ss_pred CcHHHHHHHcCC-C----CCCCCCCc----cccCC
Q 032230 71 TYILDAAEDAGI-D----LPYSCRAG----SCSTC 96 (145)
Q Consensus 71 ~tLLeal~~~Gi-~----i~~~C~~G----~CgtC 96 (145)
.-|++.+.+.|+ + ..++|..| .||.|
T Consensus 167 ~ei~~~a~~~gl~~~~~~~t~sC~~~~~~~~CG~C 201 (232)
T 2pg3_A 167 AETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQC 201 (232)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCCTTSCCTTTTSCS
T ss_pred HHHHHHHHHcCCCcccccccCCCcCCCCCCcCCcC
Confidence 348889999998 4 57889632 45555
No 86
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=23.15 E-value=1.1e+02 Score=18.75 Aligned_cols=68 Identities=9% Similarity=-0.029 Sum_probs=34.5
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHHHH----HcCCCCCCCCCCccccCCeEEEE-eCCccCCCCCCCChhcccCCeEEe
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDAAE----DAGIDLPYSCRAGSCSTCAGKVV-SGSVDQSDGSFLEDDQIDAGYVLT 125 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLeal~----~~Gi~i~~~C~~G~CgtC~v~v~-~G~~~~~e~~~L~~~~~~~g~rLa 125 (145)
++|.|...+| ...+++++..|+.+.-. ..|++... .+++ .|.. ..+...|.+-.+.+|..|-
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~-----------qrL~~~Gk~-L~D~~tL~~~~I~~g~~i~ 72 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL-----------FWLTFEGKP-LEDQLPLGEYGLKPLSTVF 72 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTT-----------EEEESSSSC-CCTTSBHHHHHCSTTCEEE
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhH-----------EEEEECCEE-CCCCCcHHHcCCCCCCEEE
Confidence 4566654333 56788999999876433 34554321 2222 3322 2233445544456666665
Q ss_pred EEeEEC
Q 032230 126 CVAYPT 131 (145)
Q Consensus 126 Cq~~~~ 131 (145)
...+..
T Consensus 73 l~~~~~ 78 (88)
T 2hj8_A 73 MNLRLR 78 (88)
T ss_dssp EEEC--
T ss_pred EEEEcC
Confidence 554433
No 87
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=22.94 E-value=1.3e+02 Score=18.86 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=18.7
Q ss_pred eEEEEECCCCeEEEEecCCCcHHHH
Q 032230 52 YKVKLITPEGEQEIECPDDTYILDA 76 (145)
Q Consensus 52 ~~Vti~~~~~~~~~~v~~g~tLLea 76 (145)
++|.|...++..++++++..|+.+.
T Consensus 16 ~~I~Vk~~~~~~~l~v~~~~TV~~L 40 (94)
T 2kan_A 16 IHVTVKFPSKQFTVEVDRTETVSSL 40 (94)
T ss_dssp EEEEEECSSCEEEEEECTTCBHHHH
T ss_pred EEEEEEcCCcEEEEEECCCCcHHHH
Confidence 5677765555678999999998764
No 88
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.49 E-value=1.3e+02 Score=19.22 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=22.2
Q ss_pred eeEEEEECCCCeEEEEecCCCcHHHHHH----HcCCC
Q 032230 51 TYKVKLITPEGEQEIECPDDTYILDAAE----DAGID 83 (145)
Q Consensus 51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~----~~Gi~ 83 (145)
+++|+|...++..++++++..|+.+.-. ..|++
T Consensus 22 ~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip 58 (100)
T 1yqb_A 22 LIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH 58 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred eEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3567766556667889999999876433 34655
No 89
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=22.40 E-value=75 Score=22.54 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHcCCC
Q 032230 63 QEIECPDDTYILDAAEDAGID 83 (145)
Q Consensus 63 ~~~~v~~g~tLLeal~~~Gi~ 83 (145)
.++.|++|+||.+.+++.++.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g 23 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRIS 23 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCC
T ss_pred EEEEECCCCCHHHHHHHhCCC
Confidence 457789999999999987774
No 90
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=22.23 E-value=1.3e+02 Score=17.74 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=21.4
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHHHH----HcCCCC
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDAAE----DAGIDL 84 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLeal~----~~Gi~i 84 (145)
++|.+...+| ...+++++..|+.+.=. ..|+++
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 4566665444 56788999999885433 356654
No 91
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.06 E-value=91 Score=19.83 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=22.1
Q ss_pred eeEEEEECCCCeE-EEEecCCCcHHHHHH----HcCCCCC
Q 032230 51 TYKVKLITPEGEQ-EIECPDDTYILDAAE----DAGIDLP 85 (145)
Q Consensus 51 ~~~Vti~~~~~~~-~~~v~~g~tLLeal~----~~Gi~i~ 85 (145)
+++|+|...+..+ ++++++..|+.+.=. ..|++..
T Consensus 7 ~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 7 GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp EEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred EEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 3456665444466 588999999876433 4676643
No 92
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.78 E-value=42 Score=25.31 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=16.3
Q ss_pred CcHHHHHHHcCCCCCCCCC
Q 032230 71 TYILDAAEDAGIDLPYSCR 89 (145)
Q Consensus 71 ~tLLeal~~~Gi~i~~~C~ 89 (145)
.-+++++.++|+.||++=.
T Consensus 118 ~Ala~gAre~GL~iPhs~~ 136 (203)
T 3j21_O 118 FAVLKGAVDAGLNVPHSPE 136 (203)
T ss_dssp HHHHHHHHHHTCCCCCCSS
T ss_pred hhhhhhcccCCeecccCCc
Confidence 4689999999999999854
No 93
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=20.88 E-value=1.4e+02 Score=17.72 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=16.7
Q ss_pred eEEEEECCCC-eEEEEecCCCcHHHH
Q 032230 52 YKVKLITPEG-EQEIECPDDTYILDA 76 (145)
Q Consensus 52 ~~Vti~~~~~-~~~~~v~~g~tLLea 76 (145)
++|++...++ ..++++++..|+.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHH
Confidence 4555554333 567899999998764
Done!