BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032231
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940S5|COPZ1_ARATH Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2
SV=1
Length = 177
Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 117/130 (90%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M+ P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+ L
Sbjct: 1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EAL+NLDLI
Sbjct: 61 ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120
Query: 121 LCLDEIVDGG 130
L DEI+DGG
Sbjct: 121 LSFDEIIDGG 130
>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2
SV=1
Length = 179
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/129 (80%), Positives = 117/129 (90%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+
Sbjct: 4 DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 64 SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123
Query: 122 CLDEIVDGG 130
CLDE+VD G
Sbjct: 124 CLDEMVDQG 132
>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2
SV=1
Length = 181
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 116/129 (89%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct: 6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 66 SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125
Query: 122 CLDEIVDGG 130
CLDE+VD G
Sbjct: 126 CLDEMVDQG 134
>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1
PE=2 SV=1
Length = 177
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/130 (77%), Positives = 117/130 (90%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK A EAEI M
Sbjct: 1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
+G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ ALENLDLIL
Sbjct: 61 DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLIL 120
Query: 121 LCLDEIVDGG 130
LCLDEIVDGG
Sbjct: 121 LCLDEIVDGG 130
>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2
PE=2 SV=1
Length = 182
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/129 (75%), Positives = 119/129 (92%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +
Sbjct: 7 ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ ALENLDLILL
Sbjct: 67 GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 126
Query: 122 CLDEIVDGG 130
C+DEIVDGG
Sbjct: 127 CIDEIVDGG 135
>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0838800 PE=2 SV=1
Length = 177
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 115/130 (88%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M
Sbjct: 1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMF 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
+ +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+ LLR V ++ ALENLDLI
Sbjct: 61 DSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIF 120
Query: 121 LCLDEIVDGG 130
LCLDE+VDGG
Sbjct: 121 LCLDEVVDGG 130
>sp|P35604|COPZ1_BOVIN Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2
Length = 177
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 88/125 (70%), Gaps = 4/125 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L TVL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGG 130
IVDGG
Sbjct: 128 IVDGG 132
>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1
Length = 177
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 87/125 (69%), Gaps = 4/125 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGG 130
IVDGG
Sbjct: 128 IVDGG 132
>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1
Length = 177
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 87/125 (69%), Gaps = 4/125 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGG 130
IVDGG
Sbjct: 128 IVDGG 132
>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1
Length = 177
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 87/125 (69%), Gaps = 4/125 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGG 130
IVDGG
Sbjct: 128 IVDGG 132
>sp|Q9JHH9|COPZ2_MOUSE Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1
Length = 205
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
+IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA L G I
Sbjct: 40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTI 95
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK D+ +V G ENEL+L +VL FD++ +LR NV+K+ LEN+D L LDE
Sbjct: 96 VYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDE 155
Query: 126 IVDGG 130
VDGG
Sbjct: 156 TVDGG 160
>sp|Q9P299|COPZ2_HUMAN Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1
Length = 210
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
+IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA G I
Sbjct: 45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTI 100
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL +V G ENEL+L +VL F+++ +LR NV+K+ LEN+D L LDE
Sbjct: 101 VYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDE 160
Query: 126 IVDGG 130
IVDGG
Sbjct: 161 IVDGG 165
>sp|O17901|COPZ_CAEEL Probable coatomer subunit zeta OS=Caenorhabditis elegans
GN=F59E10.3 PE=3 SV=1
Length = 184
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 8/134 (5%)
Query: 2 DTCP----SIKNILLLDSEGKRVAVKYY-SNDWPTNSAKEAFEKAVFTKTQKTNARTEAE 56
DT P SIK I++LD +G RV KYY + T ++AFEK++F+KT + T A+
Sbjct: 5 DTNPTSLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN---TSAD 61
Query: 57 IAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENL 116
I +L+G +Y+ DL+F+V G ENEL L L +DAV ++LR NV+KK ++++
Sbjct: 62 ILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSM 121
Query: 117 DLILLCLDEIVDGG 130
D I+L +DEI D G
Sbjct: 122 DTIMLIIDEICDEG 135
>sp|Q54HD4|COPZA_DICDI Probable coatomer subunit zeta-A OS=Dictyostelium discoideum
GN=copZa PE=3 SV=1
Length = 175
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 6 SIKNILLLDS-EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNV 64
++ + +LDS +G+RV KYY+ND+ T ++AFEK VF KT K N EI +L+ +
Sbjct: 7 TVTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFEKKVFDKTSKVNFG--GEITLLDNYL 64
Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKKEALENLDLILLCL 123
+VYK ++ ++ G +++NE+ L VL F D + L ++KK L+ ++ LL L
Sbjct: 65 VVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTL 124
Query: 124 DEIVDGG 130
DEI+DGG
Sbjct: 125 DEIIDGG 131
>sp|O74891|COPZ_SCHPO Probable coatomer subunit zeta OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ret3 PE=3 SV=1
Length = 190
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 3 TCPSIKNILLLDSEGKRVAVKYYSNDWPT-------NSAKE--AFEKAVFTKTQKTNART 53
T ++ L+LDS GKR+ KYY+ NS KE FEK +F KT KT
Sbjct: 4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKT---- 59
Query: 54 EAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
+ +I +G ++V V D+ F++ GG +ENE++L L+ DA+ LL + DK+ L
Sbjct: 60 QNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLL 119
Query: 114 ENLDLILLCLDEIVDGG 130
EN D +++ +DE +D G
Sbjct: 120 ENYDQLVIVVDETIDDG 136
>sp|P53600|COPZ_YEAST Coatomer subunit zeta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET3 PE=1 SV=1
Length = 189
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 14/135 (10%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPT--------NSAKEA--FEKAVFTKTQKTNARTEA 55
+++ +L+LD +G+R+ KYY + NS K+ FEK ++ KT K ++
Sbjct: 8 TVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQDS---- 63
Query: 56 EIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
EI + E ++++YK D+ ++ +ENE++L A+ L+L +DKK EN
Sbjct: 64 EILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQEN 123
Query: 116 LDLILLCLDEIVDGG 130
D++LL +DE +D G
Sbjct: 124 YDMVLLAIDETIDNG 138
>sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B OS=Dictyostelium discoideum
GN=copZb PE=3 SV=1
Length = 178
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 16/139 (11%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTN-----SAKEAFEKAVFTKTQKTNARTEAE 56
+T IK I++LD+ GKR+ +Y D P + K+ FEK +F K + +N E
Sbjct: 3 ETVYQIKAIIVLDNNGKRLCSCFY--DPPGTPITPLTEKDKFEKLIFEKCKTSNC----E 56
Query: 57 IAMLEGNVIVYKFVQDLHFFVTGGE-DENEL----ILATVLQGFFDAVGLLLRGNVDKKE 111
+ +++ V++ D+ FV G + NEL +L T++ F A + KK
Sbjct: 57 LEIIDNKVVIGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKT 116
Query: 112 ALENLDLILLCLDEIVDGG 130
LEN LI L +DEIV G
Sbjct: 117 FLENYALIRLYIDEIVSDG 135
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN--V 64
I+ IL+++ +G+ +YY +W T + A E + +K AR + + + +E
Sbjct: 3 IRFILMVNKQGQTRLAQYY--EWLTLEERRALEGEI---VRKCLARNDQQCSFVEHRNYK 57
Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
IVY+ L F V +DENEL + + + + GNV + + + +L+ L+
Sbjct: 58 IVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHF-GNVCELDIMFHLEKAHFMLE 116
Query: 125 EIVDGG 130
E+V G
Sbjct: 117 EMVMNG 122
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTK--TQKTNARTEAEIAMLEG-- 62
IK +++++++GK K+Y D+ ++ + VF+ ++ N EI L G
Sbjct: 2 IKAVMMMNTQGKPRLAKFY--DYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPD 59
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLC 122
+ +VYK L+F + ENEL + ++Q + + NV + + + N +
Sbjct: 60 SRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCF-SNVCELDIVFNYSKMHAV 118
Query: 123 LDEIVDGG 130
LDEIV GG
Sbjct: 119 LDEIVFGG 126
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE-GN-- 63
IK+IL++++ GK +K+Y + + ++ + +F K RTE LE GN
Sbjct: 2 IKSILIINNHGKPRLIKFY--EHYSEEKQQQIIRELFLLVSK---RTERSCNFLEIGNNS 56
Query: 64 -------VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENL 116
I+Y+ L F E+EL + ++Q F +++ NV + + + ++
Sbjct: 57 NIFDKDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFE-NVCELDLIFHI 115
Query: 117 DLILLCLDEIVDGG 130
D + LDE+V GG
Sbjct: 116 DKVHYILDEMVMGG 129
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 10 ILLLDSEGKRVAVKYYSNDWP-TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK 68
+LLL +GK K+YS P TN K F + + + + E +I +K
Sbjct: 6 LLLLSRQGKTRLTKWYS---PFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKII-FK 61
Query: 69 FVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVD 128
L+F V ++NELI+ ++ F + + GNV + + + N LDE++
Sbjct: 62 RYASLYFVVCCDREDNELIVLEIIHHFVEILDRYF-GNVCELDLIFNFHKAYYILDELIM 120
Query: 129 GG 130
G
Sbjct: 121 AG 122
>sp|F1QH17|MCA3A_DANRE Protein-methionine sulfoxide oxidase mical3a OS=Danio rerio
GN=mical3a PE=2 SV=2
Length = 1994
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
N++ YK D H+FV + ++ L +L + D LL R NVD+K L
Sbjct: 292 NIVYYK--DDTHYFVMTAKKQSLLEKGVILHDYADTEMLLSRANVDQKALL 340
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
SIK LL+ +GK K+++ AK + + T+K E +G I
Sbjct: 2 SIKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVE---YKGEKI 58
Query: 66 VYKFVQDLHFFVTGGE-DENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
VY+ L FFV G E D+NELI+ V+ F + + GNV + + + N + ++
Sbjct: 59 VYRRYASL-FFVCGIEQDDNELIILEVIHKFVECLDKYF-GNVCELDLIFNFEKAYYVME 116
Query: 125 EIVDGG 130
E++ G
Sbjct: 117 ELLLAG 122
>sp|Q8CJ19|MICA3_MOUSE Protein-methionine sulfoxide oxidase MICAL3 OS=Mus musculus
GN=Mical3 PE=1 SV=2
Length = 1993
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
N++ YK D H+FV + ++ L +L + D LL R NVD +EAL N
Sbjct: 288 NIVYYK--DDTHYFVMTAKKQSLLDKGVILHDYTDTELLLSRENVD-QEALLN 337
>sp|E7F9T0|MICA1_DANRE Protein-methionine sulfoxide oxidase mical1 OS=Danio rerio
GN=mical1 PE=3 SV=1
Length = 1214
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 EAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
++EI + N++ YK D H+FV + + L + Q F DA LL NV+ +EAL
Sbjct: 273 QSEIGVDLENIVYYK--DDTHYFVMTAKKASLLKKGVIKQDFSDADKLLAPSNVN-QEAL 329
Query: 114 EN 115
++
Sbjct: 330 QD 331
>sp|F1QWK4|MCA3B_DANRE Protein-methionine sulfoxide oxidase mical3b OS=Danio rerio
GN=mical3b PE=2 SV=2
Length = 1673
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
N++ YK D H+FV + ++ L +L+ + D LL R NVD+ L
Sbjct: 286 NIVYYK--DDTHYFVMTAKKQSLLEKGVILRDYADTEMLLSRHNVDQNALL 334
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKA-VFTKTQKTNARTEAEIAMLEGNVI 65
I+ IL+ + GK KYY P + ++ KA + + N + +A E + +
Sbjct: 2 IQFILIQNRHGKNRLSKYYV---PFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKL 58
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VY+ L+F +N+L + ++ F + + GNV + + + N + LDE
Sbjct: 59 VYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFF-GNVCELDLIFNFYKVSAILDE 117
Query: 126 IVDGG 130
I+ GG
Sbjct: 118 IILGG 122
>sp|Q7RTP6|MICA3_HUMAN Protein-methionine sulfoxide oxidase MICAL3 OS=Homo sapiens
GN=MICAL3 PE=1 SV=2
Length = 2002
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
N++ YK D H+FV + ++ L +L + D LL R NVD++ L
Sbjct: 288 NIVYYK--DDTHYFVMTAKKQSLLDKGVILHDYADTELLLSRENVDQEALL 336
>sp|G3MWR8|MICA3_BOVIN Protein-methionine sulfoxide oxidase MICAL3 OS=Bos taurus GN=MICAL3
PE=3 SV=1
Length = 1960
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
N++ YK D H+FV + ++ L +L + D LL R NVD++ L
Sbjct: 288 NIVYYK--DDTHYFVMTAKKQSLLDKGVILHDYADTELLLSRENVDQEALL 336
>sp|Q6L9T8|FA72D_HUMAN Protein FAM72D OS=Homo sapiens GN=FAM72D PE=2 SV=1
Length = 149
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE-GNVI 65
+K +LL D+E + +S D P +A + + FTK K + +IA L+ GN++
Sbjct: 30 MKAVLLADTE-----IDLFSTDIPPTNAVDFTGRCYFTKICKCKLK---DIACLKCGNIV 81
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFD-------AVGLLLRGNVDKKEALENLDL 118
Y + + + + + + Q +D V +LLRGN+ + E + D+
Sbjct: 82 GYHVIVPCSSCLLSCNNRHFWMFHS--QAVYDINRLDSTGVNVLLRGNLPEIEESTDEDV 139
Query: 119 ILLCLDEIV 127
+ + +E +
Sbjct: 140 LNISAEECI 148
>sp|Q9WYH0|PYRC_THEMA Dihydroorotase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=pyrC PE=3 SV=1
Length = 376
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 11/65 (16%)
Query: 61 EGNVIVYKFVQDLHFFV--TGGEDENELILATVLQGFFDAVGLLLRGN----VDKKEALE 114
+G V + FV DLH V GGED + L A+++ GFF V ++ N +D KE LE
Sbjct: 23 KGLVATFPFV-DLHVHVRLNGGEDYSSLEEASLVGGFFKVV---VQPNTKPLIDSKEVLE 78
Query: 115 -NLDL 118
+LDL
Sbjct: 79 RHLDL 83
>sp|Q8R2W9|PANK3_MOUSE Pantothenate kinase 3 OS=Mus musculus GN=Pank3 PE=2 SV=1
Length = 370
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 61 EGNVIVYKF-VQDLHFFVTGGEDENELILATVLQGF----------FDAVGLLLRGNVDK 109
GN+ +F QDL F+ G D+N L TVL F +G L ++ K
Sbjct: 79 RGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLSATGGGAYKFEKDFRTIGNL---HLHK 135
Query: 110 KEALENLDLILLCLDEIVDGGYATCYSF 137
+ L+ L LL +D + G A CY F
Sbjct: 136 LDELDCLVKGLLYIDSVSFNGQAECYYF 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,806,799
Number of Sequences: 539616
Number of extensions: 1902962
Number of successful extensions: 5029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 4987
Number of HSP's gapped (non-prelim): 59
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)