Query 032231
Match_columns 145
No_of_seqs 110 out of 617
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 100.0 1.8E-45 6.2E-50 272.6 17.8 138 2-143 8-145 (153)
2 1w63_Q Adapter-related protein 100.0 2.8E-39 9.7E-44 240.2 17.7 134 6-143 1-134 (158)
3 2vgl_S AP-2 complex subunit si 100.0 6.7E-39 2.3E-43 234.1 18.2 134 6-143 1-134 (142)
4 2vgl_M AP-2 complex subunit MU 100.0 8E-32 2.7E-36 227.0 15.3 131 6-142 1-131 (435)
5 1w63_M Adaptor-related protein 100.0 6.3E-32 2.2E-36 226.9 13.9 133 6-143 2-134 (423)
6 3cpt_A Mitogen-activated prote 97.1 0.01 3.6E-07 42.7 11.2 99 3-102 34-136 (143)
7 2nut_C Vesicle-trafficking pro 95.9 0.34 1.2E-05 35.9 13.3 97 6-105 2-102 (196)
8 3bw6_A Synaptobrevin homolog Y 94.8 0.71 2.4E-05 32.6 11.6 99 6-105 6-111 (144)
9 2vx8_A Nucleoporin-like protei 93.2 0.78 2.7E-05 33.5 9.2 83 16-105 53-135 (169)
10 4b93_A Vesicle-associated memb 92.3 1.8 6.3E-05 31.8 10.3 82 16-104 11-92 (189)
11 4afi_A AP-3 complex subunit de 89.8 2.9 9.9E-05 30.5 9.2 83 16-105 63-145 (173)
12 3kyq_A YKT6, synaptobrevin hom 84.8 10 0.00035 28.1 12.9 98 7-104 4-107 (199)
13 2j3t_C Trafficking protein par 81.7 11 0.00039 26.4 11.1 94 6-101 2-107 (145)
14 2j3w_A Sedlin, trafficking pro 74.8 18 0.00063 25.0 12.3 97 7-104 6-113 (142)
15 3cue_C Transport protein parti 70.4 26 0.00089 24.9 9.5 94 6-101 2-113 (159)
16 2fh5_A Signal recognition part 34.2 1.4E+02 0.0046 21.9 10.8 92 5-104 9-104 (185)
17 3cue_A Transport protein parti 33.6 1.5E+02 0.0052 22.3 12.6 23 6-28 2-24 (219)
18 1vet_B P14, late endosomal/lys 32.8 1.1E+02 0.0038 20.5 13.1 98 4-104 16-120 (125)
19 1j3w_A Giding PROTEIN-MGLB; gl 28.8 1.5E+02 0.0053 20.8 11.5 100 4-104 26-134 (163)
20 2hz5_A Dynein light chain 2A, 27.8 52 0.0018 21.9 3.1 20 4-23 24-43 (106)
21 3or5_A Thiol:disulfide interch 27.3 1E+02 0.0034 20.2 4.7 39 4-45 114-152 (165)
22 3me7_A Putative uncharacterize 24.5 87 0.003 21.3 4.0 19 8-27 128-146 (170)
23 3a0s_A Sensor protein; PAS-fol 23.4 58 0.002 17.9 2.5 15 8-22 3-17 (96)
24 2iay_A Hypothetical protein; s 21.7 49 0.0017 22.5 2.0 20 114-133 93-112 (114)
25 1nkl_A NK-lysin; saposin fold, 21.2 1.4E+02 0.0049 18.0 4.1 34 90-123 5-38 (78)
26 2hgc_A YJCQ protein; SR346, st 20.8 1.1E+02 0.0036 20.3 3.6 31 106-136 20-50 (102)
27 3msh_A Hepatitis B virus X-int 20.5 1.9E+02 0.0065 19.0 8.2 74 2-80 13-89 (99)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=1.8e-45 Score=272.63 Aligned_cols=138 Identities=43% Similarity=0.707 Sum_probs=130.0
Q ss_pred CCccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecC
Q 032231 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE 81 (145)
Q Consensus 2 ~~~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~ 81 (145)
.|++||+|++|+|++|++|++|||++++++.++|++||+.+++++.+ .++|++.+++++++||++++|||+++++.
T Consensus 8 ~sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~ 83 (153)
T 3tjz_C 8 PSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR----TDSEIALLEGLTVVYKSSIDLYFYVIGSS 83 (153)
T ss_dssp CCSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS----CCCCEEEETTEEEEEEECSSCEEEEEEET
T ss_pred ccHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCCCEEEECCEEEEEEEECCEEEEEEEcC
Confidence 47999999999999999999999998766778899999999999853 24799999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231 82 DENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF 143 (145)
Q Consensus 82 ~eNEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~ 143 (145)
++||++++++||+++++|+.||++++||++|++||+++|++||||+|+|+||||+++.|+++
T Consensus 84 ~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~ 145 (153)
T 3tjz_C 84 YENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHR 145 (153)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHH
Confidence 99999999999999999999995589999999999999999999999999999999999875
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.8e-39 Score=240.20 Aligned_cols=134 Identities=17% Similarity=0.251 Sum_probs=125.5
Q ss_pred ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (145)
Q Consensus 6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE 85 (145)
||+|++|+|++|++|++|||++. +.+.|+++++.+++++.++++ ..+|++.+++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~--~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKP-KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC--CHHHHHHHHHHHHHHHHTSCS-SSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCC--CHHHHHHHHHHHHHHHhccCC-CCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 79999999999999999999986 556889999999999887643 258999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231 86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF 143 (145)
Q Consensus 86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~ 143 (145)
++++++||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||+++.|.++
T Consensus 78 l~~le~L~~~vevl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~ 134 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKA 134 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-cCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHH
Confidence 9999999999999999998 79999999999999999999999999999999998753
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=6.7e-39 Score=234.10 Aligned_cols=134 Identities=18% Similarity=0.251 Sum_probs=124.4
Q ss_pred ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (145)
Q Consensus 6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE 85 (145)
||+|++|+|++|++|++|||++. +.+.++++++.++++..++++ ..+|++.+++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~--~~~~~~~~~~~f~~~v~~~~~-~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQF--DDDEKQKLIEEVHAVVTVRDA-KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCC--CHHHHHHHHHHHHHHHHTCCT-TSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCC--ChhhhHHHHHHHHHHHhcCCC-CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 79999999999999999999974 556889999999998886543 368999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231 86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF 143 (145)
Q Consensus 86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~ 143 (145)
++++++||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||++..++++
T Consensus 78 l~~le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~ 134 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHH
Confidence 9999999999999999998 79999999999999999999999999999998887764
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.98 E-value=8e-32 Score=226.96 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=116.8
Q ss_pred ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (145)
Q Consensus 6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE 85 (145)
||+|++|+|++|++|++|||++..+ ....++|++.+..+.. +..+|++.+++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~~----~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 75 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHARQ----QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA 75 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCC-HHHHHHHHHHTTTCSS----CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCC-hhHHHHHHHHHhcccc----CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 7999999999999999999998654 3355677666554321 1257999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhcc
Q 032231 86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLIN 142 (145)
Q Consensus 86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~ 142 (145)
++++|+||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||+++.|-+
T Consensus 76 l~~le~L~~~v~vl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~ 131 (435)
T 2vgl_M 76 AMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKT 131 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHH
Confidence 9999999999999999999 7999999999999999999999999999999997654
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.97 E-value=6.3e-32 Score=226.90 Aligned_cols=133 Identities=19% Similarity=0.277 Sum_probs=121.3
Q ss_pred ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (145)
Q Consensus 6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE 85 (145)
||+|++|+|++|+++++|||++..+.. ..++|++.+.++.... ..+|++.+++++++|+++++|||+++++.++||
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~-~~~~f~~~v~~~~~~~---~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 77 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMS-EVEHFMPILMEKEEEG---MLSPILAHGGVRFMWIKHNNLYLVATSKKNACV 77 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTT-THHHHHHHHHHHHHTS---CCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChH-HHHHHHHHHhhccccC---CCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 899999999999999999999865543 5788999988765411 157999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231 86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF 143 (145)
Q Consensus 86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~ 143 (145)
++++++||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||+++.|.++
T Consensus 78 l~~le~L~~~v~~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~ 134 (423)
T 1w63_M 78 SLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEF 134 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSS-CCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHh
Confidence 9999999999999999997 89999999999999999999999999999999988654
No 6
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=97.10 E-value=0.01 Score=42.67 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=72.7
Q ss_pred CccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcC---C-cccccceeeecCeEEEEEEeCcEEEEEE
Q 032231 3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKT---N-ARTEAEIAMLEGNVIVYKFVQDLHFFVT 78 (145)
Q Consensus 3 ~~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~---~-~~~~~~i~~~~~~~ivy~~~~dl~~~~v 78 (145)
+...+.+|+|.|++|-+++.-..+.. |..+-+..|....-..+.+. + +++.+=+..|+++.+|.-...-+++.++
T Consensus 34 rv~Gl~aI~ItDrDGVpi~kv~~~~~-~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~I 112 (143)
T 3cpt_A 34 SVEGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFI 112 (143)
T ss_dssp GSTTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred ccCCeEEEEEECCCCcEEEEecCCCC-chhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEE
Confidence 46778999999999999988887653 44455667766532222211 1 2333456789999999999999999999
Q ss_pred ecCCccHHHHHHHHHHHHHHHHhh
Q 032231 79 GGEDENELILATVLQGFFDAVGLL 102 (145)
Q Consensus 79 ~~~~eNEl~l~e~l~~~ve~L~~~ 102 (145)
++++.|--+++.+=+.+...|..+
T Consensus 113 as~~aNtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 113 ASSSANTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCchhHhhhHHHHHHHHHHH
Confidence 999999999998766666666544
No 7
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.86 E-value=0.34 Score=35.87 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=67.4
Q ss_pred ceeEEEEEcC-CCCEEEEecCCCCCC---ChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecC
Q 032231 6 SIKNILLLDS-EGKRVAVKYYSNDWP---TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE 81 (145)
Q Consensus 6 ~I~~i~iln~-~G~~~~~kyY~~~~~---~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~ 81 (145)
||...+|.-. +|- +|+.+++.... ....-+.+.+.+.+++...++ .--.+..+++.+-|..-.++.++++++.
T Consensus 2 Mi~ya~IaR~~d~~-iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~--~r~s~~~~~y~fhy~~~~gl~~l~i~d~ 78 (196)
T 2nut_C 2 MVLLTMIARVADGL-PLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSP--TRCTLEAGAMTFHYIIEQGVCYLVLCEA 78 (196)
T ss_dssp CCCCEEEEETTTCC-EEEEECCCC-----CHHHHHHHHHHHHHHCCTTSC--SEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred ceEEEEEEEcCCCc-EEEEeecccccccccHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCEEEEEEeCCCeEEEEEEcC
Confidence 5776777644 454 55666653211 122345666777777654111 1134567899999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhhcC
Q 032231 82 DENELILATVLQGFFDAVGLLLRG 105 (145)
Q Consensus 82 ~eNEl~l~e~l~~~ve~L~~~~~~ 105 (145)
+...-..+.+|..+.+-+..-++.
T Consensus 79 ~yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 79 AFPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHHHHHhccc
Confidence 999999999999998888777663
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=94.76 E-value=0.71 Score=32.62 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=64.9
Q ss_pred ceeEEEEEcCCC--CEEEEecCCCC----CCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEE-EeCcEEEEEE
Q 032231 6 SIKNILLLDSEG--KRVAVKYYSND----WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK-FVQDLHFFVT 78 (145)
Q Consensus 6 ~I~~i~iln~~G--~~~~~kyY~~~----~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~-~~~dl~~~~v 78 (145)
-|-++.|+-..+ -++++..++-. +... ..++|-..+-+.+..+-+.+.-.-...+++.+-|. +.+++.++++
T Consensus 6 kl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~-sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i 84 (144)
T 3bw6_A 6 RIYYIGVFRSGGEKALELSEVKDLSQFGFFERS-SVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLI 84 (144)
T ss_dssp CEEEEEEEECCSSSCEEEEEEECCTTSCTTTTT-HHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEEecCCCCCeEeEeeecccccChhhhh-hHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEE
Confidence 456665664322 56788877643 2222 23444444443333221111123456789999888 8899999999
Q ss_pred ecCCccHHHHHHHHHHHHHHHHhhhcC
Q 032231 79 GGEDENELILATVLQGFFDAVGLLLRG 105 (145)
Q Consensus 79 ~~~~eNEl~l~e~l~~~ve~L~~~~~~ 105 (145)
+|.+...-+.+.+|+.+.+-+.+-++.
T Consensus 85 ~D~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 85 TDKEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred ECCCCChhHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999888777763
No 9
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=93.22 E-value=0.78 Score=33.48 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=64.2
Q ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 032231 16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF 95 (145)
Q Consensus 16 ~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~ 95 (145)
.|.++++.|-... ...+..-+.+.+++...++ -..+..+++.+-|..-+++.++++.|.+..--..+.+|..+
T Consensus 53 RG~~VLae~t~~~----gnf~~iak~ll~kl~~~~~---r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI 125 (169)
T 2vx8_A 53 RGTTILAKHAWCG----GNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 125 (169)
T ss_dssp ETTEEEEEEESSC----BSHHHHHHHHHTTSCSSCE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred cCCEEEEEeccCC----CCHHHHHHHHHhhCCCCCC---ceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHH
Confidence 4778888874421 1344556777777664332 24567899999999999999999999999999999999999
Q ss_pred HHHHHhhhcC
Q 032231 96 FDAVGLLLRG 105 (145)
Q Consensus 96 ve~L~~~~~~ 105 (145)
.+-+..-++.
T Consensus 126 ~~eF~~~y~~ 135 (169)
T 2vx8_A 126 KKRFQTTYGS 135 (169)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhh
Confidence 9999888874
No 10
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=92.25 E-value=1.8 Score=31.79 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=60.8
Q ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 032231 16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF 95 (145)
Q Consensus 16 ~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~ 95 (145)
.|.++++.|=... ..-..+-+++..++...++ --...++++.+-|..-+++.++++++.+...-..+.+|+.+
T Consensus 11 rg~~iLae~t~~~----gnf~~ia~~iL~kip~~~~---k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i 83 (189)
T 4b93_A 11 RGTTILAKHAWCG----GNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 83 (189)
T ss_dssp ETTEEEEEEESSE----ECHHHHHHHHHTTCCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred eCCEEEEeCCCCC----CCHHHHHHHHHHhCCCCCC---eEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHH
Confidence 4899999973221 1233455566655543221 13567899999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 032231 96 FDAVGLLLR 104 (145)
Q Consensus 96 ve~L~~~~~ 104 (145)
.+-+..-++
T Consensus 84 ~~eF~~~~~ 92 (189)
T 4b93_A 84 KKRFQTTYG 92 (189)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHhhcc
Confidence 888877665
No 11
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=89.81 E-value=2.9 Score=30.52 Aligned_cols=83 Identities=8% Similarity=0.011 Sum_probs=61.9
Q ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 032231 16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF 95 (145)
Q Consensus 16 ~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~ 95 (145)
.|.++++.|=... . .-...-+++.+++...+. --....+++.+-|-.-+++.+++++|.+..--..+.+|..+
T Consensus 63 rg~tiLAE~t~~~-g---nf~~va~~iL~kip~~~~---r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI 135 (173)
T 4afi_A 63 RGTTILAKHAWCG-G---NFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 135 (173)
T ss_dssp ETTEEEEEEESSC-C---CHHHHHHHHHTTSCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCCEEEEEccCCC-C---CHHHHHHHHHHhCCCCCC---eEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHH
Confidence 4889999875432 1 223455555555543221 13556899999999999999999999999999999999999
Q ss_pred HHHHHhhhcC
Q 032231 96 FDAVGLLLRG 105 (145)
Q Consensus 96 ve~L~~~~~~ 105 (145)
.+-+.+-++.
T Consensus 136 ~~eF~~~yg~ 145 (173)
T 4afi_A 136 KKRFQTTYGS 145 (173)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHhch
Confidence 9998887773
No 12
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=84.75 E-value=10 Score=28.11 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=63.4
Q ss_pred eeEEEEEcCCCC--EEEEecCCCC-C--CChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEE-EEEeCcEEEEEEec
Q 032231 7 IKNILLLDSEGK--RVAVKYYSND-W--PTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV-YKFVQDLHFFVTGG 80 (145)
Q Consensus 7 I~~i~iln~~G~--~~~~kyY~~~-~--~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~~v~~ 80 (145)
|-++.++...|. .+++.-|+-. + -.-..-++|..-.-+.+.++.+++.--.+..+++.+- |.+-+++.++++++
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~itd 83 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIAD 83 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence 556677754443 3456666532 1 1123444454433333333322212234567888887 89999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhhc
Q 032231 81 EDENELILATVLQGFFDAVGLLLR 104 (145)
Q Consensus 81 ~~eNEl~l~e~l~~~ve~L~~~~~ 104 (145)
.+...-..+.+|+.+.+-+..-++
T Consensus 84 ~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 84 SEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999888877775
No 13
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=81.66 E-value=11 Score=26.36 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=55.5
Q ss_pred ceeEEEEEcCCCCEEEEecCCCCC---CC-hHHHHHHHHHHHH---HhhcCCcc-ccc--ceeeecCeEE-EEEEeCcEE
Q 032231 6 SIKNILLLDSEGKRVAVKYYSNDW---PT-NSAKEAFEKAVFT---KTQKTNAR-TEA--EIAMLEGNVI-VYKFVQDLH 74 (145)
Q Consensus 6 ~I~~i~iln~~G~~~~~kyY~~~~---~~-~~~~~~fe~~i~~---~~~~~~~~-~~~--~i~~~~~~~i-vy~~~~dl~ 74 (145)
+|.++.|+|++|..++.|=|.+.. .+ .++.+-.-.-++. -..+.++. +.. ..+..+++++ .|..-.++-
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK 81 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK 81 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence 578999999999999999886531 11 2223222222221 11121111 111 2334556644 445567899
Q ss_pred EEEEecCCccHHHHHHHHHHHH-HHHHh
Q 032231 75 FFVTGGEDENELILATVLQGFF-DAVGL 101 (145)
Q Consensus 75 ~~~v~~~~eNEl~l~e~l~~~v-e~L~~ 101 (145)
|+++++..+++ +-++++.+. +....
T Consensus 82 Fvl~td~~~~~--i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 82 VVMNTDLGVGP--IRDVLHHIYSALYVE 107 (145)
T ss_dssp EEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred EEEEecCCcch--HHHHHHHHHHHHHHH
Confidence 99999987765 557777777 56655
No 14
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=74.77 E-value=18 Score=25.04 Aligned_cols=97 Identities=4% Similarity=-0.017 Sum_probs=57.6
Q ss_pred eeEEEEEcCCCCEEEEecCCCCCCC---hHHHHHHHHHHHHHh---hcCCcc-ccc---ceeeecCeE-EEEEEeCcEEE
Q 032231 7 IKNILLLDSEGKRVAVKYYSNDWPT---NSAKEAFEKAVFTKT---QKTNAR-TEA---EIAMLEGNV-IVYKFVQDLHF 75 (145)
Q Consensus 7 I~~i~iln~~G~~~~~kyY~~~~~~---~~~~~~fe~~i~~~~---~~~~~~-~~~---~i~~~~~~~-ivy~~~~dl~~ 75 (145)
|.++.|+|++|.+++.+-|.+..+. .+.+-.+.--++... .+.... +.. .+...++++ -.|..-.++-|
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kf 85 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 85 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEE
Confidence 6899999999999999988764211 122223321133222 111100 011 122234433 44555668999
Q ss_pred EEEecCCccHHHHHHHHHHHHHHHHhhhc
Q 032231 76 FVTGGEDENELILATVLQGFFDAVGLLLR 104 (145)
Q Consensus 76 ~~v~~~~eNEl~l~e~l~~~ve~L~~~~~ 104 (145)
+++.+.. |+-.+-++++.+.++..++.-
T Consensus 86 vl~~d~~-~~~~i~~~~~~iy~~Y~~~v~ 113 (142)
T 2j3w_A 86 IMLHDVR-QEDGIKNFFTDVYDLYIKFAM 113 (142)
T ss_dssp EEEESSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCC-CcHHHHHHHHHHHHHHHHHhc
Confidence 9999863 566788888988888877765
No 15
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=70.44 E-value=26 Score=24.90 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=50.7
Q ss_pred ceeEEEEEcCCCCEEEEecCCCCC---------CChHHHHHHHH-HHHH---HhhcCCcccc-cce--eeecCeEEEE-E
Q 032231 6 SIKNILLLDSEGKRVAVKYYSNDW---------PTNSAKEAFEK-AVFT---KTQKTNARTE-AEI--AMLEGNVIVY-K 68 (145)
Q Consensus 6 ~I~~i~iln~~G~~~~~kyY~~~~---------~~~~~~~~fe~-~i~~---~~~~~~~~~~-~~i--~~~~~~~ivy-~ 68 (145)
+|.++.|+|++|..++.|-|.+.. ...++...+-- -++. -..+.++... +.+ +.-+.+++-+ .
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~e 81 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYC 81 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEEC
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEE
Confidence 578999999999999999775410 01111121111 1221 1122221111 122 2234444443 3
Q ss_pred EeCcEEEEEEecCCccHHHHHHHHHHHHH-HHHh
Q 032231 69 FVQDLHFFVTGGEDENELILATVLQGFFD-AVGL 101 (145)
Q Consensus 69 ~~~dl~~~~v~~~~eNEl~l~e~l~~~ve-~L~~ 101 (145)
.-.++-|++++|..++++ -++++.+.+ +...
T Consensus 82 T~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 82 TASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVK 113 (159)
T ss_dssp CSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHH
T ss_pred eCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHH
Confidence 456899999999887654 466777776 6655
No 16
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=34.25 E-value=1.4e+02 Score=21.90 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=50.8
Q ss_pred cceeEEEEEcCCCCEEEEecCCCC--CCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCc--EEEEEEec
Q 032231 5 PSIKNILLLDSEGKRVAVKYYSND--WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQD--LHFFVTGG 80 (145)
Q Consensus 5 ~~I~~i~iln~~G~~~~~kyY~~~--~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~d--l~~~~v~~ 80 (145)
.|+..+.|+++.|=++-+ |.+. ..+ .--.++.+.++-.- |...+.+.++++.+-|+..++ |.|+++-.
T Consensus 9 ~~~D~~~IfTkGGvVLWs--~~~~~~~~~-~~IN~LIr~VlLEE-----R~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ 80 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWC--FQGVSDSCT-GPVNALIRSVLLQE-----RGGNNSFTHEALTLKYKLDNQFELVFVVGFQ 80 (185)
T ss_dssp CSCSEEEEEETTSBEEEE--EBTTTBSCC-CHHHHHHHHTGGGC------------CCCCCEEEEEEETTTTEEEEEEES
T ss_pred cceeEEEEEeCCeEEEEe--ecCCccccc-chHHHHHHHhhhcc-----ccCCCceeEcCeEEEEEEeccCCEEEEEEEc
Confidence 478999999988766654 3222 111 23445555544221 223466889999999998775 55555555
Q ss_pred CCccHHHHHHHHHHHHHHHHhhhc
Q 032231 81 EDENELILATVLQGFFDAVGLLLR 104 (145)
Q Consensus 81 ~~eNEl~l~e~l~~~ve~L~~~~~ 104 (145)
.--+=..+-++|..+...+...++
T Consensus 81 ~iL~L~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 81 KILTLTYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTH
T ss_pred ccccchHHHHHHHHHHHHHHHHHH
Confidence 544444555555555555555553
No 17
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=33.64 E-value=1.5e+02 Score=22.28 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCEEEEecCCCC
Q 032231 6 SIKNILLLDSEGKRVAVKYYSND 28 (145)
Q Consensus 6 ~I~~i~iln~~G~~~~~kyY~~~ 28 (145)
+|.+++|+|+.|..++.|-|.+.
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~~ 24 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTND 24 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSSC
T ss_pred eeEEEEEEeCCCCEEeehhhccC
Confidence 58999999999999999988754
No 18
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=32.76 E-value=1.1e+02 Score=20.50 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=64.4
Q ss_pred ccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCC------cccccceeeecC-eEEEEEEeCcEEEE
Q 032231 4 CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTN------ARTEAEIAMLEG-NVIVYKFVQDLHFF 76 (145)
Q Consensus 4 ~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~------~~~~~~i~~~~~-~~ivy~~~~dl~~~ 76 (145)
.+.|++.++++++|-.+.+.-..+. +.+.--+.-..++....+.. +...--+...++ +.++-.- .+.++.
T Consensus 16 ~~gv~~a~lvs~DGllia~s~~~~~--dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a-~~a~L~ 92 (125)
T 1vet_B 16 TGGVQSTLLLNNEGSLLAYSGYGDT--DARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRV-ANLLLC 92 (125)
T ss_dssp CTTEEEEEEECTTCCEEEEEECCSS--CHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEE-TTEEEE
T ss_pred CCCceEEEEECCCCCeEEecCCCCc--cHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEc-CCeEEE
Confidence 3678999999999999988766432 34344566666654333211 111111345554 5555555 999999
Q ss_pred EEecCCccHHHHHHHHHHHHHHHHhhhc
Q 032231 77 VTGGEDENELILATVLQGFFDAVGLLLR 104 (145)
Q Consensus 77 ~v~~~~eNEl~l~e~l~~~ve~L~~~~~ 104 (145)
++++++.|--.+.-=++.+++-|..-++
T Consensus 93 Vla~~~a~lGlv~~~m~~lv~~L~~~lr 120 (125)
T 1vet_B 93 MYAKETVGFGMLKAKAQALVQYLEEPLT 120 (125)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHCC--
T ss_pred EEeCCCCChHHHHHHHHHHHHHHhhhhh
Confidence 9999999988888888888877765544
No 19
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=28.78 E-value=1.5e+02 Score=20.83 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=59.0
Q ss_pred ccceeEEEEEcCCCCEEEEe---cCCCCCCChHHHHHHHHHHHHHhhcC----C-cccccceeeecCeEEEEEEeC-cEE
Q 032231 4 CPSIKNILLLDSEGKRVAVK---YYSNDWPTNSAKEAFEKAVFTKTQKT----N-ARTEAEIAMLEGNVIVYKFVQ-DLH 74 (145)
Q Consensus 4 ~~~I~~i~iln~~G~~~~~k---yY~~~~~~~~~~~~fe~~i~~~~~~~----~-~~~~~~i~~~~~~~ivy~~~~-dl~ 74 (145)
.+.+.+.++++.+|-++.++ |..+.. +.+.-.+.-..++...... . +....-+...++..++....+ +-+
T Consensus 26 v~Gv~~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~ 104 (163)
T 1j3w_A 26 ETGARYALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHAL 104 (163)
T ss_dssp HHCCSEEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEE
T ss_pred cCCceEEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeE
Confidence 35688999999999998873 355432 3322233333444332211 1 111112344554444445555 589
Q ss_pred EEEEecCCccHHHHHHHHHHHHHHHHhhhc
Q 032231 75 FFVTGGEDENELILATVLQGFFDAVGLLLR 104 (145)
Q Consensus 75 ~~~v~~~~eNEl~l~e~l~~~ve~L~~~~~ 104 (145)
+.++++++.|--.+.--+...++-+...+.
T Consensus 105 L~Vla~~~a~lG~v~~~m~~~v~~l~~~L~ 134 (163)
T 1j3w_A 105 LVLVFDETAPLGKVKLHGKRASEALARIAE 134 (163)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999977777777766666666555
No 20
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=27.77 E-value=52 Score=21.89 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=16.4
Q ss_pred ccceeEEEEEcCCCCEEEEe
Q 032231 4 CPSIKNILLLDSEGKRVAVK 23 (145)
Q Consensus 4 ~~~I~~i~iln~~G~~~~~k 23 (145)
-+.+.+++|+|++|.++-+-
T Consensus 24 ~kgV~G~iIln~~G~pIrSt 43 (106)
T 2hz5_A 24 QKGVQGIIVVNTEGIPIKST 43 (106)
T ss_dssp STTEEEEEEECTTCCEEEES
T ss_pred CCCceEEEEEcCCCCeEEEe
Confidence 36789999999999887544
No 21
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=27.28 E-value=1e+02 Score=20.16 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=21.7
Q ss_pred ccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHH
Q 032231 4 CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTK 45 (145)
Q Consensus 4 ~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~ 45 (145)
+..+-.++++|++|+++ .++.... +.++-.++.+++.++
T Consensus 114 i~~~P~~~lid~~G~i~-~~~~g~~--~~~~l~~~l~~~l~~ 152 (165)
T 3or5_A 114 ITGIPTSFVIDASGNVS-GVIVGPR--SKADFDRIVKMALGA 152 (165)
T ss_dssp SCSSSEEEEECTTSBEE-EEECSCC--CHHHHHHHHHHHHC-
T ss_pred CCCCCeEEEECCCCcEE-EEEcCCC--CHHHHHHHHHHHHhh
Confidence 34566789999999976 4544332 333334444444433
No 22
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=24.50 E-value=87 Score=21.32 Aligned_cols=19 Identities=16% Similarity=0.189 Sum_probs=13.6
Q ss_pred eEEEEEcCCCCEEEEecCCC
Q 032231 8 KNILLLDSEGKRVAVKYYSN 27 (145)
Q Consensus 8 ~~i~iln~~G~~~~~kyY~~ 27 (145)
.+++++|++|+++.. |+..
T Consensus 128 ~~~~lID~~G~i~~~-~~g~ 146 (170)
T 3me7_A 128 NVVVVLSPELQIKDY-IYGV 146 (170)
T ss_dssp CEEEEECTTSBEEEE-EESS
T ss_pred ceEEEECCCCeEEEE-EeCC
Confidence 368999999997643 4544
No 23
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=23.38 E-value=58 Score=17.85 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.4
Q ss_pred eEEEEEcCCCCEEEE
Q 032231 8 KNILLLDSEGKRVAV 22 (145)
Q Consensus 8 ~~i~iln~~G~~~~~ 22 (145)
.+++++|.+|+.+.+
T Consensus 3 ~~i~~~d~~g~i~~~ 17 (96)
T 3a0s_A 3 TAIITLSKDGRITEW 17 (96)
T ss_dssp CEEEEEETTSBEEEE
T ss_pred ceEEEEcCCCCEeeh
Confidence 478999999998764
No 24
>2iay_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, translation; HET: MSE; 1.20A {Lactobacillus plantarum} SCOP: d.376.1.1
Probab=21.67 E-value=49 Score=22.51 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=15.6
Q ss_pred HcHHHHHHHHHHHhcCcEEe
Q 032231 114 ENLDLILLCLDEIVDGGYAT 133 (145)
Q Consensus 114 ~n~~~v~lilDEiid~G~i~ 133 (145)
..-++.+.++|++|+.|++.
T Consensus 93 ~~vek~~Fi~~~LveR~Il~ 112 (114)
T 2iay_A 93 EAVEQLRYILANFIERDILT 112 (114)
T ss_dssp HHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHhcCCcc
Confidence 34456789999999999864
No 25
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=21.18 E-value=1.4e+02 Score=17.97 Aligned_cols=34 Identities=3% Similarity=-0.010 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHH
Q 032231 90 TVLQGFFDAVGLLLRGNVDKKEALENLDLILLCL 123 (145)
Q Consensus 90 e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lil 123 (145)
++-..++..++.+.+.+.++..|..-+++++-.|
T Consensus 5 ~~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~l 38 (78)
T 1nkl_A 5 ESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKL 38 (78)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhC
Confidence 4556778888888887888888888888777543
No 26
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=20.83 E-value=1.1e+02 Score=20.27 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=26.6
Q ss_pred CCCHHHHHHcHHHHHHHHHHHhcCcEEeeec
Q 032231 106 NVDKKEALENLDLILLCLDEIVDGGYATCYS 136 (145)
Q Consensus 106 ~v~e~~i~~n~~~v~lilDEiid~G~i~et~ 136 (145)
+++++.+-=+-+....++..+.++|+|.-..
T Consensus 20 ~is~e~l~Ise~~~~~il~~L~d~GyI~Gv~ 50 (102)
T 2hgc_A 20 PLSENDIGVTEDQFDDAVNFLKREGYIIGVH 50 (102)
T ss_dssp CCCHHHHTSCHHHHHHHHHHHHHHTSEECCE
T ss_pred cCCHHhcCCCHHHHHHHHHHHHHCCCccceE
Confidence 6888888888899999999999999997543
No 27
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=20.46 E-value=1.9e+02 Score=18.99 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcc-cccce--eeecCeEEEEEEeCcEEEEEE
Q 032231 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNAR-TEAEI--AMLEGNVIVYKFVQDLHFFVT 78 (145)
Q Consensus 2 ~~~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~-~~~~i--~~~~~~~ivy~~~~dl~~~~v 78 (145)
|+-+.+.++++.|++|=-+-+|= . ...+..-+...+.+..++..+. .+.|. +.-|+..+.-++.+.+...+.
T Consensus 13 m~~pgvvGvlc~D~qGLcLg~~G---~--~s~~~AG~i~~la~~AakL~p~~~~~P~I~LEsDs~~~~Iqk~~~iTvAV~ 87 (99)
T 3msh_A 13 MKNPSIVGVLCTDSQGLNLGCRG---T--LSDEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVH 87 (99)
T ss_dssp HTSTTEEEEEEECTTCCEEEEEE---T--CCGGGHHHHHHHHHHHHHTCCCSSCCCCEEEEETTEEEEEEEETTEEEEEE
T ss_pred hccCCcEEEEEECCCCCcccccC---C--CCcccchHHHHHHHHHHhcCCCCCCCCEEEEEeCCceEEEEeCCcEEEEEE
Confidence 45578999999999999999983 1 1235667777777766654322 23454 445667777677777776655
Q ss_pred ec
Q 032231 79 GG 80 (145)
Q Consensus 79 ~~ 80 (145)
-.
T Consensus 88 k~ 89 (99)
T 3msh_A 88 KM 89 (99)
T ss_dssp EC
T ss_pred cc
Confidence 43
Done!