Query 032232
Match_columns 145
No_of_seqs 110 out of 661
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7q_A Translation initiation 100.0 8.8E-53 3E-57 322.6 15.3 138 2-145 1-143 (143)
2 2oqk_A Putative translation in 100.0 1.8E-44 6.2E-49 267.8 9.6 117 1-117 1-117 (117)
3 2dgy_A MGC11102 protein; EIF-1 100.0 3E-39 1E-43 238.4 10.9 104 21-124 4-109 (111)
4 1jt8_A EIF-1A, probable transl 100.0 1.9E-36 6.4E-41 220.7 3.6 90 21-110 7-99 (102)
5 3i4o_A Translation initiation 99.9 1.2E-23 4.2E-28 146.9 6.0 65 32-96 14-79 (79)
6 1ah9_A IF1, initiation factor 99.8 1.1E-21 3.8E-26 133.2 5.3 65 32-96 6-71 (71)
7 1hr0_W Translation initiation 99.8 4.3E-22 1.5E-26 135.5 -0.3 64 32-95 7-71 (71)
8 2rcn_A Probable GTPase ENGC; Y 97.3 0.0008 2.7E-08 57.2 8.6 62 33-98 47-112 (358)
9 1t9h_A YLOQ, probable GTPase E 97.1 0.0011 3.9E-08 55.0 7.4 60 35-97 12-75 (307)
10 2yv5_A YJEQ protein; hydrolase 96.2 0.015 5.2E-07 47.2 7.9 49 32-83 5-56 (302)
11 2k52_A Uncharacterized protein 96.0 0.015 5.2E-07 38.6 5.7 65 32-97 7-72 (80)
12 2wfw_A ARC; ATP-binding protei 95.1 0.047 1.6E-06 41.9 6.3 66 33-103 68-151 (153)
13 2khi_A 30S ribosomal protein S 94.2 0.11 3.7E-06 36.8 5.9 64 32-96 32-101 (115)
14 3h43_A Proteasome-activating n 92.4 0.51 1.7E-05 32.3 6.8 54 30-84 16-69 (85)
15 2wg5_A General control protein 91.8 0.54 1.9E-05 33.4 6.6 54 30-84 35-88 (109)
16 3m9b_A Proteasome-associated A 88.3 1.4 4.7E-05 36.1 7.0 59 23-82 150-225 (251)
17 2k4k_A GSP13, general stress p 86.9 1.9 6.4E-05 31.0 6.4 67 30-97 6-78 (130)
18 1kl9_A Eukaryotic translation 86.3 2.7 9.4E-05 32.2 7.4 67 29-96 13-87 (182)
19 1ssf_A Transformation related 85.9 1.3 4.3E-05 34.0 5.2 28 35-62 27-54 (156)
20 1luz_A Protein K3, protein K2; 85.3 0.94 3.2E-05 30.7 3.8 66 25-94 5-80 (88)
21 2a19_A EIF-2- alpha, eukaryoti 84.6 3.3 0.00011 31.5 7.1 67 28-95 12-86 (175)
22 2g3r_A Tumor suppressor P53-bi 83.2 4.9 0.00017 29.6 7.1 47 33-81 21-68 (123)
23 2khj_A 30S ribosomal protein S 82.5 1.9 6.4E-05 29.8 4.5 67 29-96 29-101 (109)
24 1gut_A Mopii, molybdate bindin 80.4 2.9 9.9E-05 25.9 4.5 52 31-82 6-60 (68)
25 3d3r_A Hydrogenase assembly ch 76.1 13 0.00044 26.4 7.3 56 35-103 27-85 (103)
26 1fr3_A MOP, molybdate/tungstat 76.1 4 0.00014 24.8 4.2 52 31-82 6-59 (67)
27 3aev_A Translation initiation 75.6 8 0.00027 31.4 6.9 68 28-96 8-83 (275)
28 4gop_A Putative uncharacterize 74.1 4.8 0.00016 28.6 4.6 29 34-63 23-51 (114)
29 2z1c_A Hydrogenase expression/ 71.7 19 0.00066 23.9 8.0 55 36-103 7-61 (75)
30 2id0_A Exoribonuclease 2; RNAs 68.2 18 0.00062 32.5 8.1 62 33-95 563-642 (644)
31 3mxn_B RECQ-mediated genome in 68.1 6.3 0.00022 30.0 4.3 47 34-81 63-109 (150)
32 2vqe_L 30S ribosomal protein S 67.4 6 0.00021 29.6 4.0 47 32-81 31-87 (135)
33 1u0l_A Probable GTPase ENGC; p 65.3 15 0.00052 29.1 6.4 47 34-81 11-59 (301)
34 1q8k_A Eukaryotic translation 65.1 6.3 0.00022 32.7 4.1 67 28-95 10-84 (308)
35 3kdf_A Replication protein A 1 64.3 13 0.00043 26.8 5.1 30 34-63 27-57 (121)
36 3p8d_A Medulloblastoma antigen 63.8 13 0.00044 24.4 4.7 32 30-61 18-50 (67)
37 1h9m_A MODG, molybdenum-bindin 63.4 8.1 0.00028 26.5 3.9 52 32-83 82-136 (145)
38 3qii_A PHD finger protein 20; 63.2 13 0.00046 25.6 4.8 31 30-60 33-64 (85)
39 3v2d_Y 50S ribosomal protein L 62.2 4.7 0.00016 28.9 2.5 35 65-99 1-35 (110)
40 2fhd_A RAD9 homolog, DNA repai 61.2 11 0.00038 28.7 4.5 44 35-80 25-73 (153)
41 2cqo_A Nucleolar protein of 40 60.9 15 0.0005 25.9 4.9 67 29-96 20-95 (119)
42 1nnx_A Protein YGIW; structura 60.8 14 0.00049 26.3 4.8 48 33-81 41-88 (109)
43 2nn6_I 3'-5' exoribonuclease C 59.9 18 0.0006 28.1 5.7 63 28-91 78-156 (209)
44 2ckk_A KIN17; beta barrel, rib 59.5 31 0.0011 24.9 6.6 61 34-95 35-95 (127)
45 2eqs_A ATP-dependent RNA helic 58.9 29 0.001 23.5 6.1 64 29-95 10-83 (103)
46 1wi5_A RRP5 protein homolog; S 58.5 28 0.00095 24.0 6.0 68 29-98 19-95 (119)
47 4b4t_L 26S protease subunit RP 57.4 16 0.00055 31.5 5.5 52 30-82 100-151 (437)
48 2ja9_A Exosome complex exonucl 56.0 12 0.00041 28.4 4.0 78 28-106 4-108 (175)
49 4b4t_J 26S protease regulatory 56.0 25 0.00084 30.2 6.3 55 29-84 66-120 (405)
50 1vq8_T 50S ribosomal protein L 55.6 11 0.00037 27.5 3.5 33 67-99 39-71 (120)
51 2je6_I RRP4, exosome complex R 55.4 18 0.00061 28.9 5.1 76 28-104 71-170 (251)
52 3u5e_Y L33, YL33, 60S ribosoma 55.3 11 0.00037 27.8 3.5 32 67-98 46-77 (127)
53 3iz5_Y 60S ribosomal protein L 54.8 9.2 0.00031 29.0 3.1 32 67-98 45-76 (150)
54 4a17_S RPL26, 60S ribosomal pr 52.6 13 0.00043 27.7 3.5 32 67-98 45-76 (135)
55 3j21_U 50S ribosomal protein L 52.3 10 0.00034 27.7 2.9 41 59-99 29-74 (121)
56 3cw2_C Translation initiation 52.3 14 0.00048 29.7 4.0 67 28-95 8-82 (266)
57 4b4t_I 26S protease regulatory 51.7 24 0.00083 30.7 5.7 52 30-82 101-152 (437)
58 2nn6_G Exosome complex exonucl 51.7 18 0.00063 29.6 4.7 78 27-105 123-226 (289)
59 2ot2_A Hydrogenase isoenzymes 50.9 40 0.0014 23.1 5.7 61 34-103 5-67 (90)
60 1y14_B B16, RPB7, DNA-directed 50.0 37 0.0012 25.0 5.8 58 27-86 79-152 (171)
61 3m9b_A Proteasome-associated A 48.1 33 0.0011 28.0 5.5 60 29-91 95-161 (251)
62 1h9m_A MODG, molybdenum-bindin 47.2 24 0.00082 24.0 4.1 31 31-61 9-42 (145)
63 2pi2_E Replication protein A 1 45.7 37 0.0013 25.0 5.1 44 34-81 48-92 (142)
64 2b8k_G B16, DNA-directed RNA p 44.9 44 0.0015 26.0 5.8 60 27-88 79-154 (215)
65 2zkr_t 60S ribosomal protein L 44.4 14 0.00047 27.7 2.6 31 68-98 46-77 (145)
66 2id0_A Exoribonuclease 2; RNAs 41.5 87 0.003 28.0 7.8 87 26-115 78-176 (644)
67 2zjr_R 50S ribosomal protein L 39.8 13 0.00043 26.8 1.7 33 67-99 12-44 (115)
68 1go3_E DNA-directed RNA polyme 39.8 1.1E+02 0.0037 22.5 8.0 69 27-97 77-167 (187)
69 2d9r_A Conserved hypothetical 38.4 23 0.0008 24.8 2.9 46 37-82 55-102 (104)
70 3d0f_A Penicillin-binding 1 tr 38.1 37 0.0013 23.0 3.9 50 29-81 31-94 (106)
71 2ba0_A Archeal exosome RNA bin 37.9 73 0.0025 24.8 6.1 76 28-104 54-151 (229)
72 3go5_A Multidomain protein wit 37.8 77 0.0026 25.6 6.3 63 29-95 151-214 (285)
73 2f1l_A 16S rRNA processing pro 36.0 79 0.0027 23.9 5.8 51 30-81 126-183 (187)
74 4dov_A ORC1, origin recognitio 34.7 32 0.0011 26.2 3.4 29 68-96 36-65 (163)
75 1b9m_A Protein (mode); DNA-bin 33.9 35 0.0012 26.0 3.5 51 30-82 202-255 (265)
76 2z0s_A Probable exosome comple 33.9 57 0.002 25.4 4.8 58 27-85 62-129 (235)
77 4b4t_K 26S protease regulatory 33.8 67 0.0023 27.4 5.6 51 30-81 91-141 (428)
78 2vnu_D Exosome complex exonucl 33.1 88 0.003 28.6 6.6 61 32-93 671-757 (760)
79 1kca_A Repressor protein CI; g 32.9 26 0.00088 23.8 2.4 11 71-81 47-57 (109)
80 2l66_A SSO7C4, transcriptional 32.7 9.4 0.00032 23.2 0.0 25 59-83 14-38 (53)
81 2hnf_A Repressor protein CI101 32.4 21 0.00072 24.9 1.9 22 70-92 63-84 (133)
82 1yfb_A Transition state regula 31.9 9.8 0.00034 24.1 0.0 25 59-83 24-48 (59)
83 3m7n_A Putative uncharacterize 31.6 87 0.003 23.3 5.3 55 27-83 54-124 (179)
84 3u5c_c S33, YS27, 40S ribosoma 31.5 1.1E+02 0.0038 20.1 5.5 45 34-84 8-61 (67)
85 2nn6_H Exosome complex exonucl 30.1 33 0.0011 28.3 2.9 56 27-83 91-162 (308)
86 3go5_A Multidomain protein wit 30.0 95 0.0032 25.0 5.7 63 32-97 71-136 (285)
87 3kgz_A Cupin 2 conserved barre 30.0 1.5E+02 0.0052 21.2 7.5 58 53-110 63-141 (156)
88 2qgg_A 16S rRNA-processing pro 29.6 97 0.0033 23.2 5.3 48 31-80 122-177 (182)
89 3jsy_A Acidic ribosomal protei 29.4 50 0.0017 25.6 3.7 44 62-116 142-186 (213)
90 1umu_A UMUD'; induced mutagene 29.0 35 0.0012 23.1 2.5 38 38-81 29-66 (116)
91 3r8s_U 50S ribosomal protein L 27.6 44 0.0015 23.4 2.8 28 70-97 3-30 (102)
92 2wp8_J Exosome complex exonucl 27.2 1.8E+02 0.0061 27.6 7.7 54 32-86 888-964 (977)
93 4e2g_A Cupin 2 conserved barre 26.9 1.3E+02 0.0046 19.6 7.6 71 33-103 40-120 (126)
94 2xzm_L 40S ribosomal protein S 26.8 47 0.0016 24.9 3.0 49 32-81 46-105 (142)
95 2equ_A PHD finger protein 20-l 26.5 76 0.0026 20.8 3.7 26 31-56 22-48 (74)
96 3bdn_A Lambda repressor; repre 26.3 33 0.0011 25.5 2.1 25 71-96 160-184 (236)
97 2gpr_A Glucose-permease IIA co 25.1 2.1E+02 0.0071 21.1 6.7 66 27-102 40-117 (154)
98 3k2z_A LEXA repressor; winged 25.1 36 0.0012 25.2 2.1 40 56-96 109-148 (196)
99 3j20_N 30S ribosomal protein S 24.7 54 0.0018 24.7 3.0 49 32-81 48-107 (147)
100 3au7_A TIAS, putative uncharac 24.6 57 0.0019 28.1 3.5 50 33-82 288-345 (402)
101 3j21_k Acidic ribosomal protei 24.4 64 0.0022 26.8 3.7 45 61-116 145-190 (339)
102 1mvf_D MAZE protein, PEMI-like 23.8 22 0.00076 23.1 0.6 29 54-82 10-38 (82)
103 3u5c_X RP37, S28, YS14, 40S ri 23.3 60 0.002 24.4 3.0 50 31-81 46-106 (145)
104 2eqj_A Metal-response element- 22.5 1.5E+02 0.005 19.4 4.4 32 30-61 25-58 (66)
105 2glw_A PHS018, 92AA long hypot 22.4 16 0.00053 25.1 -0.4 26 59-84 62-87 (92)
106 3psi_A Transcription elongatio 22.3 1.5E+02 0.005 29.1 6.2 71 30-101 901-978 (1219)
107 3iz5_s 60S acidic ribosomal pr 22.0 71 0.0024 26.4 3.5 45 61-116 146-191 (319)
108 3o27_A Putative uncharacterize 21.9 16 0.00056 24.2 -0.3 40 55-97 23-62 (68)
109 3tuf_B Stage II sporulation pr 21.8 1.7E+02 0.0057 23.2 5.6 30 43-77 113-143 (245)
110 4eqp_A Thermonuclease; staphyl 21.6 2.2E+02 0.0074 20.2 5.7 76 32-108 8-102 (143)
111 2kke_A Uncharacterized protein 21.5 64 0.0022 19.8 2.4 18 88-105 13-30 (53)
112 3bdl_A Staphylococcal nuclease 21.5 1.5E+02 0.0051 25.8 5.6 35 29-63 20-54 (570)
113 1b12_A Signal peptidase I; ser 20.0 42 0.0014 26.0 1.6 11 71-81 50-60 (248)
No 1
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=100.00 E-value=8.8e-53 Score=322.58 Aligned_cols=138 Identities=76% Similarity=1.210 Sum_probs=128.9
Q ss_pred CCCCCCCCcccccCCCcccccceeeecCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 2 PKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 2 ~~~~~~g~kn~r~~k~~~~~~~~el~~p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
||||||||||+||+|+.+....+++++|+++|++|+|+++|||++|+|+|+||+++|||||||||++|||++||+|+|++
T Consensus 1 p~~~gkggk~~~r~K~~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 1 PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp CCCCCSSSSSSCCCCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred CCCCCCCCcccccccccchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 89999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEcChhHHHHHHHcCCCCccccccccccCCCCCCCCCCCCCcccc----cc-ccccCC
Q 032232 82 RDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEEDDGADNDYIEF----ED-EDIDKI 145 (145)
Q Consensus 82 ~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~~~~~~~~~~~~~~~~~~~~e~----~~-~~~~~~ 145 (145)
|+|+++||+|+|||+++|++||+++|+||++|.++++++|+.+ ++++|+| ++ +|||+|
T Consensus 81 ~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~~~~------~~~~~~f~~~~~~~~~~~~~ 143 (143)
T 1d7q_A 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPG------DDDEIQFDDIGDDDEDIDDI 143 (143)
T ss_dssp SSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSSCC------CCCCCCCCCSCSSCCSCSCC
T ss_pred ccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCccccccCC------CCccceeccCccchhccccC
Confidence 9999999999999999999999999999999999999999732 3344777 22 488887
No 2
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.8e-44 Score=267.80 Aligned_cols=117 Identities=73% Similarity=1.256 Sum_probs=93.0
Q ss_pred CCCCCCCCCcccccCCCcccccceeeecCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEE
Q 032232 1 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVG 80 (145)
Q Consensus 1 m~~~~~~g~kn~r~~k~~~~~~~~el~~p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~ 80 (145)
|||||||||||+||+|+.++...+++++|+++|++|+|++++||++|.|+|+||++++|+||||||++|||.+||+|+|+
T Consensus 1 ~~~~~~~g~k~~~r~k~~~~~~~~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve 80 (117)
T 2oqk_A 1 MPKNKGKGGKNRRRGKNDSEGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVS 80 (117)
T ss_dssp ---------------------CCCCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEE
T ss_pred CCCCCCCCCCcccccccccchhhhhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEE
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCceEEEEEcChhHHHHHHHcCCCCccccccc
Q 032232 81 LRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNE 117 (145)
Q Consensus 81 ~~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~~ 117 (145)
+++|++.+|+|+|+|.++|++||+++|+||++|.+|+
T Consensus 81 ~~~~~~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~~~ 117 (117)
T 2oqk_A 81 LRDFQDSKGDIILKYTPDEARALKSKGEIPETTKINE 117 (117)
T ss_dssp ECTTCTTEEEEEEECCHHHHHHHHHTTSSCTTCCC--
T ss_pred EEcCCCCeEEEEEEechHHHHHHHHcCCCCcccCccC
Confidence 9999999999999999999999999999999999874
No 3
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=238.43 Aligned_cols=104 Identities=26% Similarity=0.366 Sum_probs=99.2
Q ss_pred ccceeeecCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccCC-CCceEEEEEcChhH
Q 032232 21 DEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ-DDKADVILKYMPDE 99 (145)
Q Consensus 21 ~~~~el~~p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~~-~~Kg~Ii~ry~~de 99 (145)
.+.+++++|+++|++|+|++++||++|+|+|+||+++|||||||||++|||++||+|+|++|+|+ +.||+|+|||+++|
T Consensus 4 ~~l~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~q 83 (111)
T 2dgy_A 4 GSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDH 83 (111)
T ss_dssp CCCCSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHHH
T ss_pred hhhccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHcCCCCccccc-cccccCCCC
Q 032232 100 ARLLKAYGELPESTRL-NEGIAGGLD 124 (145)
Q Consensus 100 vk~L~k~g~wP~~f~~-~~~~~~~~~ 124 (145)
+++|+++|+||++|.. .+.++||+-
T Consensus 84 vk~L~k~g~wP~~F~~~~~~~~~~~~ 109 (111)
T 2dgy_A 84 VRSLQKEGFWPEAFSEVAEKHNSGPS 109 (111)
T ss_dssp HHHHHHHTCSCHHHHHHHTTCCSSSC
T ss_pred HHHHHHcCCCChHHhhcccccCcCCC
Confidence 9999999999999987 567888875
No 4
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=100.00 E-value=1.9e-36 Score=220.68 Aligned_cols=90 Identities=28% Similarity=0.606 Sum_probs=86.7
Q ss_pred ccceeeecCC--CCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccCC-CCceEEEEEcCh
Q 032232 21 DEKRELVFKE--DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ-DDKADVILKYMP 97 (145)
Q Consensus 21 ~~~~el~~p~--e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~~-~~Kg~Ii~ry~~ 97 (145)
...+++++|+ ++|++|+|++++||++|+|+|+||+++|||||||||++|||++||+|+|++|+|+ ++||+|+|||++
T Consensus 7 ~~~~~~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 7 EQQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTK 86 (102)
T ss_dssp CCCCCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred CcceecccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence 3467788877 9999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred hHHHHHHHcCCCC
Q 032232 98 DEARLLKAYGELP 110 (145)
Q Consensus 98 devk~L~k~g~wP 110 (145)
+|++||+++|+||
T Consensus 87 de~~~L~k~g~~p 99 (102)
T 1jt8_A 87 TQVEWLKRKGYLD 99 (102)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCc
Confidence 9999999999999
No 5
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=99.89 E-value=1.2e-23 Score=146.87 Aligned_cols=65 Identities=26% Similarity=0.379 Sum_probs=63.2
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEecCCEEEEEeccCCCCceEEEEEcC
Q 032232 32 GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHK-KVWIAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
-++.|+|++++||+.|.|+|+||++++|+||||||+ +|||.+||+|+|++|||+++||+|+|||.
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~~ 79 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence 589999999999999999999999999999999999 99999999999999999999999999984
No 6
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.84 E-value=1.1e-21 Score=133.19 Aligned_cols=65 Identities=28% Similarity=0.336 Sum_probs=61.8
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEecCCEEEEEeccCCCCceEEEEEcC
Q 032232 32 GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHK-KVWIAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
.++.|+|++++||+.|.|+|+||++++|++|||||+ .|||++||+|+|++++|++.+|+|+|||.
T Consensus 6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~~r~~ 71 (71)
T 1ah9_A 6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEEEEEC
Confidence 457899999999999999999999999999999998 69999999999999999999999999985
No 7
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.82 E-value=4.3e-22 Score=135.49 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=61.8
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEecCCEEEEEeccCCCCceEEEEEc
Q 032232 32 GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHK-KVWIAAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry 95 (145)
.++.|+|++++||+.|.|+|+||++++|++|||||+ +|||++||+|+|++++|++.+|+|+|||
T Consensus 7 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~~r~ 71 (71)
T 1hr0_W 7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK 71 (71)
T ss_dssp CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEEEeC
Confidence 567899999999999999999999999999999997 9999999999999999999999999997
No 8
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.32 E-value=0.0008 Score=57.17 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=48.0
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccCCC----CceEEEEEcChh
Q 032232 33 QEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQD----DKADVILKYMPD 98 (145)
Q Consensus 33 q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~~~----~Kg~Ii~ry~~d 98 (145)
.+.|+|++..| +.|.|.+++|..+.|+++|+|+. +..||+|.+++.+.+. .+|.|..++.+.
T Consensus 47 ~~~g~Vi~~~~-~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~ 112 (358)
T 2rcn_A 47 PAEGIVISRFG-MHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKAAAEGVNVKGIVEAVHERT 112 (358)
T ss_dssp CEEEEEEEEET-TEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC-------CCEEEEEECCCS
T ss_pred cceEEEEEEEC-CEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCCccccccccceEeEEeCCc
Confidence 36899999776 57889999999999999999986 8899999998754221 137787776543
No 9
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=0.0011 Score=54.97 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=47.6
Q ss_pred EEEEEEeCCCceEEEEeCC---CCEEEEEecccccc-eEEEecCCEEEEEeccCCCCceEEEEEcCh
Q 032232 35 YAQVLRMLGNGRCEAMCID---GTKRLCHIRGKMHK-KVWIAAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 35 ig~V~~~lG~~~~~V~~~d---G~~~La~IpGKfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~ 97 (145)
.|+|++..| +.|.|.+++ |..+.|+++|+||+ .+.+..||+|.+++.+ ...|.|..++.+
T Consensus 12 ~g~vi~~~~-~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R 75 (307)
T 1t9h_A 12 EGKIIKALS-GFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKER 75 (307)
T ss_dssp EEEEEEEET-TEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCC
T ss_pred CeEEEEEEC-CEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcch
Confidence 588888775 678899887 88999999999997 6778899999998653 346777666543
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.24 E-value=0.015 Score=47.18 Aligned_cols=49 Identities=24% Similarity=0.152 Sum_probs=40.4
Q ss_pred CeEEEEEEEeCCCceE--EEEeCCCCEEEEEecccccc-eEEEecCCEEEEEecc
Q 032232 32 GQEYAQVLRMLGNGRC--EAMCIDGTKRLCHIRGKMHK-KVWIAAGDIILVGLRD 83 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~--~V~~~dG~~~La~IpGKfRk-~IwIk~GD~VlV~~~~ 83 (145)
+-+.|+|++..+ +.| .|. ++|..+.|+++|+||+ .+ ...||+|.+++++
T Consensus 5 ~~~~g~v~~~~~-~~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~ 56 (302)
T 2yv5_A 5 ELKRGLVVDREA-QMIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD 56 (302)
T ss_dssp CCEEEEEEEEET-TEEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE
T ss_pred CceeEEEEEeeC-CeEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc
Confidence 456799999886 566 555 7788999999999997 45 8899999999875
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=96.02 E-value=0.015 Score=38.62 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=52.8
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceE-EEecCCEEEEEeccCCCCceEEEEEcCh
Q 032232 32 GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKV-WIAAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~I-wIk~GD~VlV~~~~~~~~Kg~Ii~ry~~ 97 (145)
..+.|+|+.+...+.| |.+.+|..=|++++.=...++ .++.||.|.|.....+..+++|...+.+
T Consensus 7 ~iv~G~V~~v~~~G~f-V~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 7 KFYKGVVTRIEKYGAF-INLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CEEEEEEEEEETTEEE-EEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CEEEEEEEEEeCCEEE-EEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 4589999999998888 999989888888886333333 5899999999999988888998776644
No 12
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=95.14 E-value=0.047 Score=41.90 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=47.9
Q ss_pred eEEEEEEEeCCC-ceEEEEeCCCCEEEEEecccccce-E----------------EEecCCEEEEEeccCCCCceEEEEE
Q 032232 33 QEYAQVLRMLGN-GRCEAMCIDGTKRLCHIRGKMHKK-V----------------WIAAGDIILVGLRDYQDDKADVILK 94 (145)
Q Consensus 33 q~ig~V~~~lG~-~~~~V~~~dG~~~La~IpGKfRk~-I----------------wIk~GD~VlV~~~~~~~~Kg~Ii~r 94 (145)
-.++.|.++++. ++..|....|+++++++++.+... + .+++||.|+|++. .|-...+
T Consensus 68 Gev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~r-----ag~A~E~ 142 (153)
T 2wfw_A 68 GEISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTK-----AGYAFER 142 (153)
T ss_dssp EEEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETT-----TTEEEEE
T ss_pred cCEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCC-----CceEEEE
Confidence 357889999999 899999999999999999999763 2 6999999999975 4555666
Q ss_pred cChhHHHHH
Q 032232 95 YMPDEARLL 103 (145)
Q Consensus 95 y~~devk~L 103 (145)
..+.|+..|
T Consensus 143 ipk~eVe~L 151 (153)
T 2wfw_A 143 IPKAEVEDL 151 (153)
T ss_dssp ECSCC----
T ss_pred cCccchhhh
Confidence 666666655
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=94.22 E-value=0.11 Score=36.81 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=52.1
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecccc-----cc-eEEEecCCEEEEEeccCCCCceEEEEEcC
Q 032232 32 GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKM-----HK-KVWIAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKf-----Rk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
..+.|+|+.+...+.| |++.+|..-|++++.-. ++ .-.++.||.|.|.....+..+++|...+.
T Consensus 32 ~~~~G~V~~v~~~G~F-V~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk 101 (115)
T 2khi_A 32 TKLTGRVTNLTDYGCF-VEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 101 (115)
T ss_dssp CEEEEEEEEEETTEEE-EECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCC
T ss_pred CEEEEEEEEEECCEEE-EEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEE
Confidence 4589999999998888 99999999999987532 22 34689999999999988888888876654
No 14
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=92.37 E-value=0.51 Score=32.33 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=45.2
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccC
Q 032232 30 EDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDY 84 (145)
Q Consensus 30 ~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~ 84 (145)
.....+|.|+++++.+.+-|....|.++++.+.+.+-+. -+++|+.|.+....|
T Consensus 16 ~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~-~LkpG~rVaLn~~s~ 69 (85)
T 3h43_A 16 VPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPD-DLAPGKRVCLNQQTL 69 (85)
T ss_dssp SCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGG-GCCTTCEEEECTTTC
T ss_pred CCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHH-HCCCCCEEEECCccc
Confidence 457899999999999999999999999999999988752 258898888765433
No 15
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=91.76 E-value=0.54 Score=33.42 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=45.4
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccC
Q 032232 30 EDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDY 84 (145)
Q Consensus 30 ~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~ 84 (145)
.....+|.|+++++.+.+.|...+|.++++.+.+.+-+.- +++|+.|.+....|
T Consensus 35 ~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~-LkpG~rVaLn~~s~ 88 (109)
T 2wg5_A 35 SPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEE-LKPGARVALNQQTL 88 (109)
T ss_dssp SCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTT-CCTTCEEEEETTTC
T ss_pred CCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHH-CCCCCEEEECCcce
Confidence 3478999999999999999999999999999998887532 78888888765443
No 16
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.28 E-value=1.4 Score=36.11 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=45.9
Q ss_pred ceeeecCCCCeEEEEEEEeC-CCceEEEEeCCCCEEEEEecccccceE----------------EEecCCEEEEEec
Q 032232 23 KRELVFKEDGQEYAQVLRML-GNGRCEAMCIDGTKRLCHIRGKMHKKV----------------WIAAGDIILVGLR 82 (145)
Q Consensus 23 ~~el~~p~e~q~ig~V~~~l-G~~~~~V~~~dG~~~La~IpGKfRk~I----------------wIk~GD~VlV~~~ 82 (145)
..-++.+.-| .++.|.+++ ++.+..|....|.++++++++.+...- -+++||-|+|++.
T Consensus 150 VevLp~E~~G-ev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~r 225 (251)
T 3m9b_A 150 VEAGTFEAVG-EISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTK 225 (251)
T ss_dssp CCCCCCCCCS-EEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTT
T ss_pred EEecCCCCcc-cEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCC
Confidence 3333333334 567888888 667999999999999999999997531 6899999999986
No 17
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=86.89 E-value=1.9 Score=31.02 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=51.2
Q ss_pred CCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccc----cc-eEEEecCCEEEEEeccCCCCceEEEEEcCh
Q 032232 30 EDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKM----HK-KVWIAAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 30 ~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKf----Rk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~ 97 (145)
..|+ +.|+|+.+...+.| |.+.+|.+=|+|++-=. .. .-.++.||.|.|.....+..++.|...+..
T Consensus 6 ~vG~iv~G~V~~i~~~G~F-V~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~ 78 (130)
T 2k4k_A 6 EVGSVYTGKVTGLQAYGAF-VALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRA 78 (130)
T ss_dssp CTTCEEEEEEEEEETTEEE-EEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHH
T ss_pred CCCCEEEEEEEEEeCCeEE-EEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEee
Confidence 3454 69999999887766 88889999999986432 11 235889999999999888778888776643
No 18
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=86.35 E-value=2.7 Score=32.21 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=48.6
Q ss_pred CCCCe-EEEEEEEeCCCceEEEEe--CCCCEEEEEecc----cccc-eEEEecCCEEEEEeccCCCCceEEEEEcC
Q 032232 29 KEDGQ-EYAQVLRMLGNGRCEAMC--IDGTKRLCHIRG----KMHK-KVWIAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 29 p~e~q-~ig~V~~~lG~~~~~V~~--~dG~~~La~IpG----KfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
|..|+ +.|+|+.+...+.| |.+ .+|..=|+|++- +++. +=.++.||.|.|.....+..+++|..-+.
T Consensus 13 p~~G~iv~G~V~~I~~fGaF-V~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk 87 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAY-VSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKR 87 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEE-EEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEeccEEE-EEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 55555 78999999988877 888 578888999874 3333 44689999999999998888898876653
No 19
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=85.92 E-value=1.3 Score=34.05 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.0
Q ss_pred EEEEEEeCCCceEEEEeCCCCEEEEEec
Q 032232 35 YAQVLRMLGNGRCEAMCIDGTKRLCHIR 62 (145)
Q Consensus 35 ig~V~~~lG~~~~~V~~~dG~~~La~Ip 62 (145)
-|+|++.+++++|+|...||.+-.++.+
T Consensus 27 pG~V~~~~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 27 SGKITRDVGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp EEEEEECCTTTEEEEECTTSCEEEEETT
T ss_pred ccEEEEeccCCEEEEEEcCCCeeEeecc
Confidence 5999999999999999999998877644
No 20
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=85.27 E-value=0.94 Score=30.67 Aligned_cols=66 Identities=9% Similarity=0.028 Sum_probs=48.4
Q ss_pred eeecCCCCe-EEEEEEEeCCCceEEEEeCC--CCEEEEEec-----ccccc--eEEEecCCEEEEEeccCCCCceEEEEE
Q 032232 25 ELVFKEDGQ-EYAQVLRMLGNGRCEAMCID--GTKRLCHIR-----GKMHK--KVWIAAGDIILVGLRDYQDDKADVILK 94 (145)
Q Consensus 25 el~~p~e~q-~ig~V~~~lG~~~~~V~~~d--G~~~La~Ip-----GKfRk--~IwIk~GD~VlV~~~~~~~~Kg~Ii~r 94 (145)
.+..|..|+ ..|+|+ +...+.| |++.+ |.+=|+|++ .++.. .+. .||.|.|.....+..+++|-..
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~F-Vel~~~~~~eGLvhis~el~~~~~~~~~~~~--~Gd~V~VkV~~vd~~~~kI~ls 80 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALY-IYLFDYPHFEAILAESVKMHMDRYVEYRDKL--VGKTVKVKVIRVDYTKGYIDVN 80 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEE-EEETTCTTSEEEEGGGSSCCHHHHHHHHHHH--TTCEEEEEEEEEETTTTEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEE-EEECCCCCeEEEEEeeHHhCcccccCHhHEe--CCCEEEEEEEEEECCCCEEEEE
Confidence 345577675 688998 8888776 77764 789999998 23322 223 9999999999888888888553
No 21
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=84.63 E-value=3.3 Score=31.47 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=50.0
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccc-eEEEecCCEEEEEeccCCCCceEEEEEc
Q 032232 28 FKEDG-QEYAQVLRMLGNGRCEAMCI--DGTKRLCHIRG----KMHK-KVWIAAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 28 ~p~e~-q~ig~V~~~lG~~~~~V~~~--dG~~~La~IpG----KfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry 95 (145)
.|..| .+.|+|+.+...+.| |.+. +|..=|+|++- +.+. +=.++.||.|.|.....+..+++|..-+
T Consensus 12 ~p~~G~iv~G~V~~i~~fGaF-V~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSl 86 (175)
T 2a19_A 12 YPEIDDIVMVNVQQIAEMGAY-VKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSK 86 (175)
T ss_dssp SCCTTCEEEEEEEEEETTEEE-EEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEES
T ss_pred CCCCCCEEEEEEEEEecceEE-EEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEE
Confidence 46455 478999999888877 7774 78888988874 2222 3458899999999998888888887655
No 22
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=83.18 E-value=4.9 Score=29.64 Aligned_cols=47 Identities=17% Similarity=0.028 Sum_probs=32.3
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-eEEEecCCEEEEEe
Q 032232 33 QEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHK-KVWIAAGDIILVGL 81 (145)
Q Consensus 33 q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk-~IwIk~GD~VlV~~ 81 (145)
=--|+|++.+|+++|+|...||.+..+. +|+-- .=-|-.|--|+...
T Consensus 21 yYpG~V~~~~~~~ky~V~FdDg~~~~v~--~k~iiv~d~ip~g~~V~A~t 68 (123)
T 2g3r_A 21 FYSGKITRDVGAGKYKLLFDDGYECDVL--GKDILLCDPIPLDTEVTALS 68 (123)
T ss_dssp EEEEEEEEEEETTEEEEEETTSCEEEEE--GGGEECCSSCCTTCEEEEEC
T ss_pred CcccEEEEeccCCeEEEEEcCCCeeEee--cceEEEecccCCCcEEEEee
Confidence 3568999999999999999999987654 22211 11334566666655
No 23
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=82.49 E-value=1.9 Score=29.83 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEeccccc----c-eEEEecCCEEEEEeccCCCCceEEEEEcC
Q 032232 29 KEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMH----K-KVWIAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 29 p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfR----k-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
+..|+ +.|+|+.+...+.| |.+.+|..=|++++-=.. . .-.++.||.|.|.....+..+++|...+.
T Consensus 29 ~~~G~iv~G~V~~v~~~G~f-V~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k 101 (109)
T 2khj_A 29 NKKGAIVTGKVTAVDAKGAT-VELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 101 (109)
T ss_dssp CCSSSEEEEEEEEECSSCEE-EECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETT
T ss_pred CCCCCEEEEEEEEEECCeEE-EEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 44454 78999999988866 888888766666653211 1 22588999999999888777677766543
No 24
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=80.40 E-value=2.9 Score=25.87 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCeEEEEEEEeC-CCceEEEE--eCCCCEEEEEecccccceEEEecCCEEEEEec
Q 032232 31 DGQEYAQVLRML-GNGRCEAM--CIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82 (145)
Q Consensus 31 e~q~ig~V~~~l-G~~~~~V~--~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~ 82 (145)
.|++-|+|+++. ++...+|. +.+|....|.|+..--...-+.+|+.|.+...
T Consensus 6 rN~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 6 RNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVK 60 (68)
T ss_dssp SCEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEECC
T ss_pred ceEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEEEe
Confidence 478888988874 44445554 45788899999866556677899999988754
No 25
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=76.12 E-value=13 Score=26.45 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=37.0
Q ss_pred EEEEEEeCCC-ceEEEEeCCCCEEEEEecccccceE--EEecCCEEEEEeccCCCCceEEEEEcChhHHHHH
Q 032232 35 YAQVLRMLGN-GRCEAMCIDGTKRLCHIRGKMHKKV--WIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 103 (145)
Q Consensus 35 ig~V~~~lG~-~~~~V~~~dG~~~La~IpGKfRk~I--wIk~GD~VlV~~~~~~~~Kg~Ii~ry~~devk~L 103 (145)
-++|+++.++ +.-.|.. .|.++.+++. -+ -++.||||||.. |-.+.++.+++++..
T Consensus 27 P~kVveI~~~~~~A~Vd~-~Gv~reV~l~-----Lv~e~~~vGDyVLVHv-------GfAi~kIDeeeA~et 85 (103)
T 3d3r_A 27 PSQVVAVDNERQSVTVDT-LGVRRDVSSH-----LMTEPLAIGDYVLIHI-------GFVMNKIDRNDALQS 85 (103)
T ss_dssp CEEEEEEETTTTEEEEEE-TTEEEEEECT-----TBSSCCCTTCEEEEEE-------EEEEEEECHHHHHHH
T ss_pred CEEEEEEeCCCCEEEEEc-CCEEEEEEEE-----eecCCCCCCCEEEEee-------chhhhhCCHHHHHHH
Confidence 4678887654 4544533 4776655543 11 156799999986 567888888887764
No 26
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=76.09 E-value=4 Score=24.84 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCeEEEEEEEeC-CCceEEEEeC-CCCEEEEEecccccceEEEecCCEEEEEec
Q 032232 31 DGQEYAQVLRML-GNGRCEAMCI-DGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82 (145)
Q Consensus 31 e~q~ig~V~~~l-G~~~~~V~~~-dG~~~La~IpGKfRk~IwIk~GD~VlV~~~ 82 (145)
.|++-|+|+.+. ++...+|.+. .|....|.++..--...-+.+|+.|.+...
T Consensus 6 ~N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 6 RNKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVK 59 (67)
T ss_dssp CEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEEe
Confidence 467888888874 4455566553 333788888765555677899999988764
No 27
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=75.63 E-value=8 Score=31.43 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=52.0
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC--CCCEEEEEecccccc-----eEEEecCCEEEEEeccCCCCceEEEEEcC
Q 032232 28 FKEDG-QEYAQVLRMLGNGRCEAMCI--DGTKRLCHIRGKMHK-----KVWIAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 28 ~p~e~-q~ig~V~~~lG~~~~~V~~~--dG~~~La~IpGKfRk-----~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
.|..| .+.|+|+.+...+.| |.+. +|..=|+|++-=... .-.++.||.|.|.....+..+++|..-+.
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaF-V~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk 83 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAF-LELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLR 83 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEE-EEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCCEEEEEEEEEECcEEE-EEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 35445 489999999888876 7887 699999998753222 23589999999999988888888866653
No 28
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=74.09 E-value=4.8 Score=28.65 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=26.5
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecc
Q 032232 34 EYAQVLRMLGNGRCEAMCIDGTKRLCHIRG 63 (145)
Q Consensus 34 ~ig~V~~~lG~~~~~V~~~dG~~~La~IpG 63 (145)
++|+|++..| +.+.+.|+||..+.+.++.
T Consensus 23 ivGkV~~~~g-~~~~l~s~d~~~Vtv~l~~ 51 (114)
T 4gop_A 23 IVGKVHKVTG-NTLLMQTSDLGNVEIAMTP 51 (114)
T ss_dssp EEEEEEEEET-TEEEEECTTSCEEEEECCS
T ss_pred EEEEEeeeCC-CEEEEEeCCCCEEEEEeCC
Confidence 7999999998 8999999999999988874
No 29
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=71.66 E-value=19 Score=23.93 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=36.1
Q ss_pred EEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccCCCCceEEEEEcChhHHHHH
Q 032232 36 AQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 103 (145)
Q Consensus 36 g~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~devk~L 103 (145)
++|+++ .++.-.|.. .|.++-+++.== -- ++.||||||.. |-.+.++.+++.+..
T Consensus 7 ~kVvei-~~~~A~vd~-~Gv~r~V~l~Lv--~~--~~vGD~VLVH~-------GfAi~~ideeeA~et 61 (75)
T 2z1c_A 7 GKVIEV-NGPVAVVDF-GGVKREVRLDLM--PD--TKPGDWVIVHT-------GFAIEKLDEKKAMEI 61 (75)
T ss_dssp EEEEEE-ETTEEEEEE-TTEEEEEECTTS--TT--CCTTCEEEEET-------TEEEEEECHHHHHHH
T ss_pred EEEEEE-CCCEEEEEc-CCEEEEEEEEEe--CC--CCCCCEEEEec-------chhhhhCCHHHHHHH
Confidence 678887 555555544 677776654311 11 47899999985 456778888887654
No 30
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=68.19 E-value=18 Score=32.47 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=49.5
Q ss_pred eEEEEEEEeCCCceEEEEe-CCCCEEEEEecc------cc-----------cceEEEecCCEEEEEeccCCCCceEEEEE
Q 032232 33 QEYAQVLRMLGNGRCEAMC-IDGTKRLCHIRG------KM-----------HKKVWIAAGDIILVGLRDYQDDKADVILK 94 (145)
Q Consensus 33 q~ig~V~~~lG~~~~~V~~-~dG~~~La~IpG------Kf-----------Rk~IwIk~GD~VlV~~~~~~~~Kg~Ii~r 94 (145)
...|+|+.+...+.| |++ ..|..-+++++. .+ +..-.++.||.|.|.....+..++.|...
T Consensus 563 ~f~g~V~~V~~~G~f-V~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~ 641 (644)
T 2id0_A 563 RFAAEIVDISRGGMR-VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 (644)
T ss_dssp CEEEEEEEEETTEEE-EEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEE
T ss_pred eEEEEEEEEeCCceE-EEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 588999999998887 888 579999999842 21 22346899999999999888888888776
Q ss_pred c
Q 032232 95 Y 95 (145)
Q Consensus 95 y 95 (145)
+
T Consensus 642 l 642 (644)
T 2id0_A 642 P 642 (644)
T ss_dssp E
T ss_pred E
Confidence 5
No 31
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=68.13 E-value=6.3 Score=29.95 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=34.9
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 34 EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 34 ~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
+.|+|++. +++.+.+....|.-.+..+..=.+.+=|++.|.||.|--
T Consensus 63 mQG~VV~~-~~g~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G 109 (150)
T 3mxn_B 63 MQGRVVMA-DRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMG 109 (150)
T ss_dssp EEEEEEEE-ETTEEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEE
T ss_pred EEeEEEEe-CCCeEEEECCCceEEEeeccccCCCCcccCCCCEEEEEE
Confidence 67999996 778888888878655444443334478999999999864
No 32
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=67.45 E-value=6 Score=29.59 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=35.8
Q ss_pred CeEEEEEEEeCC------Cc----eEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 32 GQEYAQVLRMLG------NG----RCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 32 ~q~ig~V~~~lG------~~----~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
-|.-|+|++..+ |+ ..+|++.||.+++|.|||== -.+.+.|.|||.=
T Consensus 31 Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL~ngk~VtAyIPG~G---hnlqEhs~VLVrG 87 (135)
T 2vqe_L 31 PFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEG---HNLQEHSVVLIRG 87 (135)
T ss_dssp SEEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSC---CCCCTTCEEEEEE
T ss_pred CCcCeEEEEEEecCCCCCchhheeEEEEEcCCCCEEEEEcCCCC---CccCcCCEEEEcC
Confidence 366666666552 22 35789999999999999876 5688999999983
No 33
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=65.25 E-value=15 Score=29.10 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCceEEEEeCC-CCEEEEEeccccc-ceEEEecCCEEEEEe
Q 032232 34 EYAQVLRMLGNGRCEAMCID-GTKRLCHIRGKMH-KKVWIAAGDIILVGL 81 (145)
Q Consensus 34 ~ig~V~~~lG~~~~~V~~~d-G~~~La~IpGKfR-k~IwIk~GD~VlV~~ 81 (145)
+.|+|++..+ +.|.|.+.+ |....+.+.|+|. ...---.||.|.+..
T Consensus 11 ~~g~v~~~~~-~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~~ 59 (301)
T 1u0l_A 11 RRGIVVSFHS-NMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTP 59 (301)
T ss_dssp EEEEEEEEET-TEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEEC
T ss_pred eeEEEEEeeC-CEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEEE
Confidence 4799998775 677898777 8999999999998 444445678877653
No 34
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=65.13 E-value=6.3 Score=32.68 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=49.8
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccc-eEEEecCCEEEEEeccCCCCceEEEEEc
Q 032232 28 FKEDG-QEYAQVLRMLGNGRCEAMCI--DGTKRLCHIRG----KMHK-KVWIAAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 28 ~p~e~-q~ig~V~~~lG~~~~~V~~~--dG~~~La~IpG----KfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry 95 (145)
.|..| .+.|+|+.+...+.| |.+. +|..=|+|++- +.++ .-.++.||.|.|.....+..+++|..-+
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaF-V~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSl 84 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAY-VSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSK 84 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEE-EESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEE-EEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 35445 489999999988876 7886 68888888763 2222 3358899999999998888788885544
No 35
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=64.30 E-value=13 Score=26.77 Aligned_cols=30 Identities=3% Similarity=-0.119 Sum_probs=26.9
Q ss_pred EEEEEEEeCC-CceEEEEeCCCCEEEEEecc
Q 032232 34 EYAQVLRMLG-NGRCEAMCIDGTKRLCHIRG 63 (145)
Q Consensus 34 ~ig~V~~~lG-~~~~~V~~~dG~~~La~IpG 63 (145)
++|+|+++.+ +..+.+.|.||.++.+.++.
T Consensus 27 ivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~ 57 (121)
T 3kdf_A 27 FVGRLEKIHPTGKMFILSDGEGKNGTIELME 57 (121)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSS
T ss_pred EEEEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Confidence 7899999985 66999999999999999985
No 36
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=63.77 E-value=13 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEe
Q 032232 30 EDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHI 61 (145)
Q Consensus 30 ~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~I 61 (145)
.+++ --|+|+++.|++.|.|...||.+..+..
T Consensus 18 ~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~ 50 (67)
T 3p8d_A 18 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKH 50 (67)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEG
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeH
Confidence 4444 6799999999999999999988776543
No 37
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=63.45 E-value=8.1 Score=26.52 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=36.4
Q ss_pred CeEEEEEEEeC-CCc--eEEEEeCCCCEEEEEecccccceEEEecCCEEEEEecc
Q 032232 32 GQEYAQVLRML-GNG--RCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRD 83 (145)
Q Consensus 32 ~q~ig~V~~~l-G~~--~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~ 83 (145)
+.+-|+|+.+. ++. .+.|.+.+|....|.++..-....-+.+|+.|.+...+
T Consensus 82 N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~~l~l~~G~~V~~~~k~ 136 (145)
T 1h9m_A 82 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAVIKA 136 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHTTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHhhcCCCCCCEEEEEEcc
Confidence 57888888764 333 45666678899999988554344457789999887643
No 38
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=63.17 E-value=13 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=25.5
Q ss_pred CCCe-EEEEEEEeCCCceEEEEeCCCCEEEEE
Q 032232 30 EDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCH 60 (145)
Q Consensus 30 ~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~ 60 (145)
.+++ --|+|+++.+++.|.|...||.+.++.
T Consensus 33 ~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk 64 (85)
T 3qii_A 33 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVK 64 (85)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCCeEEec
Confidence 4454 679999999999999999998776654
No 39
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=62.17 E-value=4.7 Score=28.93 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=25.7
Q ss_pred ccceEEEecCCEEEEEeccCCCCceEEEEEcChhH
Q 032232 65 MHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDE 99 (145)
Q Consensus 65 fRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~de 99 (145)
|+-.+.|+.||.|.|---.+-...|.|+..|...+
T Consensus 1 ~~~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ 35 (110)
T 3v2d_Y 1 MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKY 35 (110)
T ss_dssp CCCCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGT
T ss_pred CCcccccCCCCEEEEeEcCCCCeEeEEEEEECCCC
Confidence 34467799999999876554456888888886543
No 40
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=61.16 E-value=11 Score=28.67 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=35.3
Q ss_pred EEEEEEeC-----CCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEE
Q 032232 35 YAQVLRML-----GNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVG 80 (145)
Q Consensus 35 ig~V~~~l-----G~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~ 80 (145)
-|.++... ++.+|.|...|+.+- .+...--|++-++.||.|.|+
T Consensus 25 PATcvg~~~~~~~~~~~y~VrFdDs~~~--~V~~~~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 25 PATLVAPVHSAVTSSIMYKVQFDDATMS--TVNSNQIKRFFLKKGDVVQST 73 (153)
T ss_dssp EEEEEEEECCSSCCBCEEEEEETTSCEE--EEETTSEEESCCCTTCEEEET
T ss_pred ceEEEccCCCcccCCeEEEEEEcCCCCC--ccChhhceeeeeecCCEEEEC
Confidence 34555544 789999999999777 666666788999999999998
No 41
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.94 E-value=15 Score=25.91 Aligned_cols=67 Identities=16% Similarity=0.068 Sum_probs=46.5
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeCC-CCEEEEEeccc----ccc-eEEEecCCEEEEEeccCCCC--ceEEEEEcC
Q 032232 29 KEDG-QEYAQVLRMLGNGRCEAMCID-GTKRLCHIRGK----MHK-KVWIAAGDIILVGLRDYQDD--KADVILKYM 96 (145)
Q Consensus 29 p~e~-q~ig~V~~~lG~~~~~V~~~d-G~~~La~IpGK----fRk-~IwIk~GD~VlV~~~~~~~~--Kg~Ii~ry~ 96 (145)
|..| .+.|+|+.+...+.| |.+.+ +..=|+|++-= ..+ .-.++.||.|.|.....+.. +++|..-+.
T Consensus 20 ~~vG~iv~G~V~~I~~fGaF-V~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk 95 (119)
T 2cqo_A 20 PALYTIFQGEVAMVTDYGAF-IKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMK 95 (119)
T ss_dssp CCTTCEEEEEEEEEETTEEE-EECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEEST
T ss_pred cCCCCEEEEEEEEEeCceEE-EEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEe
Confidence 4445 589999999988876 77754 35778887632 122 22488999999998876653 478876553
No 42
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=60.79 E-value=14 Score=26.25 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=41.2
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 33 QEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 33 q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
.+.|.|++.+|+..|......| ++.+.|+-+.-.-.-|.++|.|.+.=
T Consensus 41 ~L~G~Iv~~~~~d~Y~F~D~TG-~I~VeId~~~w~g~~v~p~~~Vri~G 88 (109)
T 1nnx_A 41 TLRGNIVERISDDLYVFKDASG-TINVDIDHKRWNGVTVTPKDTVEIQG 88 (109)
T ss_dssp EEEEEEEEEEETTEEEEEETTE-EEEEECCGGGSTTCCCCTTSCEEEEE
T ss_pred EEEEEEEEEeCCCeEEEECCCc-cEEEEEChhhcCCcccCCCCEEEEEE
Confidence 3789999999999999999999 78899998876667788888887764
No 43
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=59.93 E-value=18 Score=28.08 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=38.6
Q ss_pred cCCCCe-EEEEEEEeCCCceEEEEeC-----------CCCEEEEEecccccceEE----EecCCEEEEEeccCCCCceEE
Q 032232 28 FKEDGQ-EYAQVLRMLGNGRCEAMCI-----------DGTKRLCHIRGKMHKKVW----IAAGDIILVGLRDYQDDKADV 91 (145)
Q Consensus 28 ~p~e~q-~ig~V~~~lG~~~~~V~~~-----------dG~~~La~IpGKfRk~Iw----Ik~GD~VlV~~~~~~~~Kg~I 91 (145)
.|..|+ ++|+|+.+...+ +.|.+. .|....-.++.....++. ++.||.|.+.....++..+.|
T Consensus 78 ~p~vGDvV~G~V~~v~~~~-a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRF-AKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCTTCEEEEEEEEECSSE-EEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEEEEECce-EEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 466665 899999987655 445532 354444444433322222 899999998887665544444
No 44
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=59.49 E-value=31 Score=24.87 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=46.6
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccCCCCceEEEEEc
Q 032232 34 EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 34 ~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry 95 (145)
.-|+|..+..++...|.+.+....+ .++..+=-.|-=+.|+.|+|-.-++-...|.++.+-
T Consensus 35 ~KgvV~~V~~~~~c~V~l~~~g~~v-~v~q~~LETViP~~g~~V~Iv~G~~rG~~g~L~~id 95 (127)
T 2ckk_A 35 KKAIVKEVIDKYTAVVKMIDSGDKL-KLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESIN 95 (127)
T ss_dssp CEEEEEEEETTTEEEEEETTTCCEE-EEEGGGEEECCCCTTCEEEECSSTTTTCEEEEEEEE
T ss_pred ceEEEEEecCCCeEEEEECCCCCEE-EEchHHcEEecCCCCCEEEEEecccCCcEEEEEEEe
Confidence 5688888888899999995444444 788777666666899999998877777778777663
No 45
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.86 E-value=29 Score=23.46 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeCC---CCEEEEEecccc-----cc-eEEEecCCEEEEEeccCCCCceEEEEEc
Q 032232 29 KEDG-QEYAQVLRMLGNGRCEAMCID---GTKRLCHIRGKM-----HK-KVWIAAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 29 p~e~-q~ig~V~~~lG~~~~~V~~~d---G~~~La~IpGKf-----Rk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry 95 (145)
+..| .+.|+|+.+...+.| |++.+ +..=|+|++-=. ++ .-.++.||.|.|.....+. ++|...+
T Consensus 10 ~~vG~i~~G~V~~v~~fG~F-V~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 10 PTIGDIYNGKVTSIMQFGCF-VQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCTTCEEEEEEEEECSSCEE-EEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred CCCCCEEEEEEEEEeccEEE-EEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 4444 589999999988876 77775 888899887531 11 2348899999999886654 4665544
No 46
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=58.51 E-value=28 Score=24.03 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=46.6
Q ss_pred CCCC-eEEEEEEEeCCCceEEEEeC-CCCEEEEEecccc----c--c-eEEEecCCEEEEEeccCCCCceEEEEEcChh
Q 032232 29 KEDG-QEYAQVLRMLGNGRCEAMCI-DGTKRLCHIRGKM----H--K-KVWIAAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 29 p~e~-q~ig~V~~~lG~~~~~V~~~-dG~~~La~IpGKf----R--k-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~d 98 (145)
+..| .+.|+|+.+...+.| |.+. .+.. +.++..-+ + . .=.++.||.|.|.....+..+++|...+...
T Consensus 19 l~~G~i~~G~V~~v~~fG~f-V~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 19 LKPGMLLTGTVSSLEDHGYL-VDIGVDGTR-AFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp CCTTCEEEEEEEEECSSEEE-EECCCSSCE-EEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred CCCCCEEEEEEEEEeCceEE-EEECCCCeE-EEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchh
Confidence 3445 588999999887766 7776 4544 44433221 1 1 2358899999999998888888887776544
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.41 E-value=16 Score=31.46 Aligned_cols=52 Identities=13% Similarity=0.267 Sum_probs=43.4
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEec
Q 032232 30 EDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82 (145)
Q Consensus 30 ~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~ 82 (145)
+-++++|.|+++++.+.+-|....|..+++.+.+.+-.. -+++|+.|.+...
T Consensus 100 ~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~-~l~~g~~v~~~~~ 151 (437)
T 4b4t_L 100 SIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRS-KLKKGVRVTLDIT 151 (437)
T ss_dssp SCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTT-SCCTTCEEEECSS
T ss_pred cCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHh-hcCCCceeeEccc
Confidence 457899999999999999999999999999998887542 3577888877654
No 48
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=55.97 E-value=12 Score=28.44 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=48.5
Q ss_pred cCCCC-eEEEEEEEeCCCceEEEEeCC-CCEEEEE---ecccccc-eEEEecCCEEEEEeccCCC-------------C-
Q 032232 28 FKEDG-QEYAQVLRMLGNGRCEAMCID-GTKRLCH---IRGKMHK-KVWIAAGDIILVGLRDYQD-------------D- 87 (145)
Q Consensus 28 ~p~e~-q~ig~V~~~lG~~~~~V~~~d-G~~~La~---IpGKfRk-~IwIk~GD~VlV~~~~~~~-------------~- 87 (145)
.|..| -++|+|+.+.+ ..+.|.... -..-+-+ ++|.-++ +=.++.||+|......... .
T Consensus 4 ~P~~gDvViG~V~~v~~-~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~~~~~r 82 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFS-DSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGR 82 (175)
T ss_dssp CCCTTCEEEEEEEEECS-SEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCTTTCS
T ss_pred cCCCcCEEEEEEEEEEC-cEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecCCCceEEEeccccccc
Confidence 36655 48999999865 668888864 2222222 3344344 5669999999966543221 1
Q ss_pred ---ceE----EEEEcChhHHHHHHHc
Q 032232 88 ---KAD----VILKYMPDEARLLKAY 106 (145)
Q Consensus 88 ---Kg~----Ii~ry~~devk~L~k~ 106 (145)
-|. .+...++.-++.|...
T Consensus 83 ~~~lG~L~~G~l~~v~~~~v~rl~~~ 108 (175)
T 2ja9_A 83 DAGFGILEDGMIIDVNLNFARQLLFN 108 (175)
T ss_dssp CTTCEEECSCEEEECCHHHHHHHHHC
T ss_pred ccCCcCcCCCEEEEEcHHHhhHHhcC
Confidence 122 4677888888888764
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.96 E-value=25 Score=30.15 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=45.6
Q ss_pred CCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEeccC
Q 032232 29 KEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDY 84 (145)
Q Consensus 29 p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~ 84 (145)
.+.++.+|.|+++++.+.+-|....|..+++.+...+-.. -+++|+.|.+....+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~-~l~~~~~v~l~~~~~ 120 (405)
T 4b4t_J 66 QEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVK-DLKASQRVCLRSDSY 120 (405)
T ss_dssp CCCCEEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTT-TCCSSCEEEEETTTC
T ss_pred cCCCceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHh-hCCCcceeeeecccc
Confidence 3457899999999999999999999999999998777552 357899998876554
No 50
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=55.58 E-value=11 Score=27.46 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=26.4
Q ss_pred ceEEEecCCEEEEEeccCCCCceEEEEEcChhH
Q 032232 67 KKVWIAAGDIILVGLRDYQDDKADVILKYMPDE 99 (145)
Q Consensus 67 k~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~de 99 (145)
+++.|+.||.|.|---.+-...|.|+.+|...+
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~ 71 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKA 71 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTTT
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEECCCC
Confidence 468899999999987666567899999886543
No 51
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=55.36 E-value=18 Score=28.89 Aligned_cols=76 Identities=8% Similarity=0.141 Sum_probs=48.7
Q ss_pred cCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccccceE--------EEecCCEEEEEeccCCCC-----------
Q 032232 28 FKEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKV--------WIAAGDIILVGLRDYQDD----------- 87 (145)
Q Consensus 28 ~p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~I--------wIk~GD~VlV~~~~~~~~----------- 87 (145)
.|..|+ ++|+|+.+.+. .+.|.+..+..=+.|++.=.-+++ .+++||.|.+.....+..
T Consensus 71 ~p~~GDiV~G~V~~v~~~-ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~~ 149 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIY-GWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKD 149 (251)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCSTT
T ss_pred CCCCCCEEEEEEEEEeCc-eEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcccc
Confidence 466665 89999998765 677888766655555542111233 689999999877544321
Q ss_pred ce----EEEEEcChhHHHHHH
Q 032232 88 KA----DVILKYMPDEARLLK 104 (145)
Q Consensus 88 Kg----~Ii~ry~~devk~L~ 104 (145)
-| =+++..++.-++.|.
T Consensus 150 lG~L~~G~v~~vs~~~v~rl~ 170 (251)
T 2je6_I 150 LGRVSNGIVIDIMPVKVPRVI 170 (251)
T ss_dssp CEECCSSCEEECCGGGHHHHH
T ss_pred CCcccCCEEEEECHHHhHHHh
Confidence 12 245677777777664
No 52
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=55.33 E-value=11 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=26.0
Q ss_pred ceEEEecCCEEEEEeccCCCCceEEEEEcChh
Q 032232 67 KKVWIAAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 67 k~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~d 98 (145)
+++.|+.||.|.|-.-.+-...|.|+.+|...
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 77 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLK 77 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGGG
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECCC
Confidence 37999999999998766556789999888654
No 53
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=54.85 E-value=9.2 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.0
Q ss_pred ceEEEecCCEEEEEeccCCCCceEEEEEcChh
Q 032232 67 KKVWIAAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 67 k~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~d 98 (145)
+++.|+.||.|.|---.+-...|.|+.+|...
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk 76 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRRR 76 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETTT
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcCC
Confidence 47999999999998766556789999888654
No 54
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=52.62 E-value=13 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=26.1
Q ss_pred ceEEEecCCEEEEEeccCCCCceEEEEEcChh
Q 032232 67 KKVWIAAGDIILVGLRDYQDDKADVILKYMPD 98 (145)
Q Consensus 67 k~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~d 98 (145)
+++.|+.||.|.|-.-.+-...|.|+.+|...
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 76 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKK 76 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcCC
Confidence 37999999999998766656789999888664
No 55
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.31 E-value=10 Score=27.66 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=29.1
Q ss_pred EEeccccc-----ceEEEecCCEEEEEeccCCCCceEEEEEcChhH
Q 032232 59 CHIRGKMH-----KKVWIAAGDIILVGLRDYQDDKADVILKYMPDE 99 (145)
Q Consensus 59 a~IpGKfR-----k~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~de 99 (145)
|.|+--+| +++.|+.||.|.|---.+-...|.|+.+|...+
T Consensus 29 a~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~ 74 (121)
T 3j21_U 29 APLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRY 74 (121)
T ss_dssp EEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTTT
T ss_pred CcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecCC
Confidence 45554444 369999999999986554456889988886543
No 56
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=52.29 E-value=14 Score=29.70 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=48.4
Q ss_pred cCCCCe-EEEEEEEeCCCceEEEEeC--CCCEEEEEecccc----cc-eEEEecCCEEEEEeccCCCCceEEEEEc
Q 032232 28 FKEDGQ-EYAQVLRMLGNGRCEAMCI--DGTKRLCHIRGKM----HK-KVWIAAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 28 ~p~e~q-~ig~V~~~lG~~~~~V~~~--dG~~~La~IpGKf----Rk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry 95 (145)
.|..|+ +.|+|+.+...+.| |.+. +|..=|+|++--- +. .=.++.||.|.|.....+..++.|-.-+
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaF-V~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSl 82 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSY-VSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSL 82 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBE-EEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEES
T ss_pred cCCCCCEEEEEEEEEeccEEE-EEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEE
Confidence 355554 88999999998877 7776 7777777776432 22 2348899999999998877677774443
No 57
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.74 E-value=24 Score=30.66 Aligned_cols=52 Identities=8% Similarity=0.088 Sum_probs=43.3
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEec
Q 032232 30 EDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82 (145)
Q Consensus 30 ~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~ 82 (145)
....++|.|++++..+++-|..+.|..+++.+.+.+-+. -+++|+.|.+...
T Consensus 101 ~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~-~l~~~~~v~l~~~ 152 (437)
T 4b4t_I 101 GNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKE-LLEPGCSVLLHHK 152 (437)
T ss_dssp CSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGG-GCCTTCEEEECTT
T ss_pred CCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHh-HccCCcEEEEecc
Confidence 346789999999999999999999999999998877552 3578888887654
No 58
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=51.66 E-value=18 Score=29.64 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=49.0
Q ss_pred ecCCCCe-EEEEEEEeCCCceEEEEeCC---CCEEEEEecccccc-eEEEecCCEEEEEeccCCC------C------c-
Q 032232 27 VFKEDGQ-EYAQVLRMLGNGRCEAMCID---GTKRLCHIRGKMHK-KVWIAAGDIILVGLRDYQD------D------K- 88 (145)
Q Consensus 27 ~~p~e~q-~ig~V~~~lG~~~~~V~~~d---G~~~La~IpGKfRk-~IwIk~GD~VlV~~~~~~~------~------K- 88 (145)
..|..|. ++|+|+.+. ...|.|.... +.-.+-.++|--++ +=.+++||+|......... . +
T Consensus 123 YiP~vGDiVIG~Vt~v~-~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc~~~~~k~ 201 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKS-GDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRA 201 (289)
T ss_dssp CCCCSSEEEEEEEEEEE-TTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSCCEEECSBTTTTB
T ss_pred CCCCCCCEEEEEEEEEe-CcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcCCCCceEEEeccccccc
Confidence 3577765 899999974 5668888753 22232234544444 5568999999977654321 1 1
Q ss_pred ---eEE-----EEEcChhHHHHHHH
Q 032232 89 ---ADV-----ILKYMPDEARLLKA 105 (145)
Q Consensus 89 ---g~I-----i~ry~~devk~L~k 105 (145)
|.| +...++.-++.|..
T Consensus 202 ~~lG~L~~~G~l~~Vs~~lvrrl~~ 226 (289)
T 2nn6_G 202 NGMGVIGQDGLLFKVTLGLIRKLLA 226 (289)
T ss_dssp CCCCSCCSSCEEECCCHHHHHHHHC
T ss_pred ccCCEecCCeEEEEEChHHhhhhhc
Confidence 334 77777777777764
No 59
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=50.86 E-value=40 Score=23.12 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=37.9
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEeccc--ccceEEEecCCEEEEEeccCCCCceEEEEEcChhHHHHH
Q 032232 34 EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGK--MHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 103 (145)
Q Consensus 34 ~ig~V~~~lG~~~~~V~~~dG~~~La~IpGK--fRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~devk~L 103 (145)
+-++|+++.++. -.| ...|.++-+++.== --..=-+..||||||.. |-.+.++.+++.+..
T Consensus 5 IP~kVvei~~~~-A~V-d~~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH~-------GfAi~~ideeeA~et 67 (90)
T 2ot2_A 5 VPGQIRTIDGNQ-AKV-DVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHV-------GFAMSVINEAEARDT 67 (90)
T ss_dssp EEEEEEEECSSE-EEE-ECSSSEEEEECTTTCSBCTTSCBCTTCEEEEET-------TEEEEEECHHHHHHH
T ss_pred cceEEEEEcCCc-EEE-EcCCeEEEEEEeeeeccCCCCCCCCCCEEEEec-------ChhhhhCCHHHHHHH
Confidence 457899987764 333 34577776665410 00000156899999985 456778888887653
No 60
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=50.02 E-value=37 Score=24.99 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=40.7
Q ss_pred ecCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecc---ccc----ceE--E------EecCCEEEEEeccCCC
Q 032232 27 VFKEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRG---KMH----KKV--W------IAAGDIILVGLRDYQD 86 (145)
Q Consensus 27 ~~p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpG---KfR----k~I--w------Ik~GD~VlV~~~~~~~ 86 (145)
..|..|+ +.|+|+.+..-+.| |++.. ..-|.|++- .++ ..+ | ++.||.|.|.....+.
T Consensus 79 ~~~~~Gev~~G~V~~v~~fG~F-V~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 152 (171)
T 1y14_B 79 FKPFKGEVVDGTVVSCSQHGFE-VQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCIS 152 (171)
T ss_dssp ECCCTTCEEEEEEEEEETTEEE-EEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEecCEEE-EEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEc
Confidence 4466675 78999999988888 77766 888888873 222 232 2 8889999988775543
No 61
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.06 E-value=33 Score=27.96 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccc-----cc--eEEEecCCEEEEEeccCCCCceEE
Q 032232 29 KEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKM-----HK--KVWIAAGDIILVGLRDYQDDKADV 91 (145)
Q Consensus 29 p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKf-----Rk--~IwIk~GD~VlV~~~~~~~~Kg~I 91 (145)
...-..||+|+++.+.+...|. ..|..+++.++..+ +- +|.++ -.+++|+.-+++ ..|+|
T Consensus 95 ~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E-~~Gev 161 (251)
T 3m9b_A 95 GQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFE-AVGEI 161 (251)
T ss_dssp HSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCC-CCSEE
T ss_pred cCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCC-CcccE
Confidence 4567899999999999999999 57788888887744 32 55554 355666665554 34544
No 62
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=47.21 E-value=24 Score=24.03 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=21.7
Q ss_pred CCeEEEEEEEeCCCc---eEEEEeCCCCEEEEEe
Q 032232 31 DGQEYAQVLRMLGNG---RCEAMCIDGTKRLCHI 61 (145)
Q Consensus 31 e~q~ig~V~~~lG~~---~~~V~~~dG~~~La~I 61 (145)
.+.+-|+|+....++ .+.+.+..|....+.|
T Consensus 9 ~N~l~g~V~~~~~~~~~~~v~l~~~~~~~l~~~i 42 (145)
T 1h9m_A 9 RNVFKGTVSALKEGAVNAEVDILLGGGDKLAAVV 42 (145)
T ss_dssp SEEEEEEEEEEEECSSEEEEEEEESSSCEEEEEE
T ss_pred ceEEEEEEEEEEcCCceEEEEEEECCCCEEEEEe
Confidence 467888888765543 6677777777777764
No 63
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=45.71 E-value=37 Score=25.04 Aligned_cols=44 Identities=7% Similarity=-0.122 Sum_probs=31.8
Q ss_pred EEEEEEEeC-CCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 34 EYAQVLRML-GNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 34 ~ig~V~~~l-G~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
++|+|+++- .++.+.+.|.||.++.+.++.-+ +--.+.+|-|-=
T Consensus 48 iVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL----~~~~~~~VEViG 92 (142)
T 2pi2_E 48 FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPL----DEEISGIVEVVG 92 (142)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSSCC----SSCCCSEEEEEE
T ss_pred EEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCC----CccCCCEEEEEE
Confidence 789999883 46888999999999999987532 222355665543
No 64
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=44.90 E-value=44 Score=25.98 Aligned_cols=60 Identities=12% Similarity=-0.040 Sum_probs=42.8
Q ss_pred ecCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecc---ccc----ceEE--------EecCCEEEEEeccCCCCc
Q 032232 27 VFKEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRG---KMH----KKVW--------IAAGDIILVGLRDYQDDK 88 (145)
Q Consensus 27 ~~p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpG---KfR----k~Iw--------Ik~GD~VlV~~~~~~~~K 88 (145)
..|..|+ +.|+|+.+..-+.| |++.. ..-|.|++- .++ ..+| ++.||.|.|.....+..+
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~F-Velg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~ 154 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFE-VQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQV 154 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEE-EECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEET
T ss_pred eccCCCCEEEEEEEEEecceEE-EEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCC
Confidence 4466776 78999999988888 77765 888888872 222 2322 889999999887655433
No 65
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.41 E-value=14 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred eEEEecCCEEEEEeccCCCCc-eEEEEEcChh
Q 032232 68 KVWIAAGDIILVGLRDYQDDK-ADVILKYMPD 98 (145)
Q Consensus 68 ~IwIk~GD~VlV~~~~~~~~K-g~Ii~ry~~d 98 (145)
.+.|+.||.|.|---.+-... |.|+.+|...
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETTT
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECCC
Confidence 567888998888766555567 8888777554
No 66
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=41.48 E-value=87 Score=28.03 Aligned_cols=87 Identities=13% Similarity=-0.053 Sum_probs=48.3
Q ss_pred eecCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceE--EEecCCEEEEEeccCC----CC-ceEEEEEcC--
Q 032232 26 LVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKV--WIAAGDIILVGLRDYQ----DD-KADVILKYM-- 96 (145)
Q Consensus 26 l~~p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~I--wIk~GD~VlV~~~~~~----~~-Kg~Ii~ry~-- 96 (145)
+......+++|++... + +.+-|.-.|-.... .||.+-.... -.+.||+|+|++..|. .- .|.|+.++-
T Consensus 78 iler~~~~~vg~~~~~-~-~~~~v~pdd~~~~~-~i~~~~~~~~~~~~~~g~~v~v~i~~~p~~~~~p~~g~i~~~LG~~ 154 (644)
T 2id0_A 78 LVEPFLTRFVGKVQGK-N-DRLAIVPDHPLLKD-AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFG 154 (644)
T ss_dssp EEECSCSEEEEEEEEE-T-TEEEEEESSTTCCS-CEECCBCSSCCCCCCSSCEEEEEEEECGGGTCSSCEEEEEEEEECT
T ss_pred EEecCCCEEEEEEEEe-C-CEEEEEECCCCccc-cccccccccccccCCCCCEEEEEEecCcCCCCCCceEEEEEEeCCC
Confidence 3334455666666543 2 22223333322111 4444433322 3378999999986553 23 799999993
Q ss_pred ---hhHHHHHHHcCCCCccccc
Q 032232 97 ---PDEARLLKAYGELPESTRL 115 (145)
Q Consensus 97 ---~devk~L~k~g~wP~~f~~ 115 (145)
..++..+..+.-+|.+|..
T Consensus 155 ~d~~~e~~~~l~~~~l~~~fp~ 176 (644)
T 2id0_A 155 DDHFVPWWVTLARHNLEKEAPD 176 (644)
T ss_dssp TCTTHHHHHHHHHTTCCCSCCC
T ss_pred CCccchHHHHHHHcCCCCCCCh
Confidence 3455656666558887754
No 67
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=39.84 E-value=13 Score=26.78 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=25.4
Q ss_pred ceEEEecCCEEEEEeccCCCCceEEEEEcChhH
Q 032232 67 KKVWIAAGDIILVGLRDYQDDKADVILKYMPDE 99 (145)
Q Consensus 67 k~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~de 99 (145)
+++.|+.||.|.|---.+-...|.|+..+...+
T Consensus 12 rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ 44 (115)
T 2zjr_R 12 DKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQ 44 (115)
T ss_dssp SCCSSCTTSEEECCSSSSTTCEEEEEEEETTTT
T ss_pred eeCcccCCCEEEEeEcCCCCcEEEEEEEECCCC
Confidence 466899999999976555567899988886543
No 68
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=39.82 E-value=1.1e+02 Score=22.45 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=46.8
Q ss_pred ecCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccc----c-----------c-eEEEecCCEEEEEeccCCCC--
Q 032232 27 VFKEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKM----H-----------K-KVWIAAGDIILVGLRDYQDD-- 87 (145)
Q Consensus 27 ~~p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKf----R-----------k-~IwIk~GD~VlV~~~~~~~~-- 87 (145)
..|..|+ +.|+|+++...+.| |++. +..-|.|++--. . + .-.++.||.|.|.....+..
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~f-V~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSF-VRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEE-EECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EccCCCCEEEEEEEEEeCcEEE-EEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 3466666 78999999888765 7774 478888876432 1 2 45689999999988766543
Q ss_pred ---ceEEEEEcCh
Q 032232 88 ---KADVILKYMP 97 (145)
Q Consensus 88 ---Kg~Ii~ry~~ 97 (145)
.+.|..-...
T Consensus 155 ~p~~~~I~lS~k~ 167 (187)
T 1go3_E 155 RKRGSKIALTMRQ 167 (187)
T ss_dssp ----CEEEEECCS
T ss_pred CCCccEEEEEEcC
Confidence 4577655443
No 69
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=38.39 E-value=23 Score=24.84 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=36.5
Q ss_pred EEEEeCCCceEEEEe-CCC-CEEEEEecccccceEEEecCCEEEEEec
Q 032232 37 QVLRMLGNGRCEAMC-IDG-TKRLCHIRGKMHKKVWIAAGDIILVGLR 82 (145)
Q Consensus 37 ~V~~~lG~~~~~V~~-~dG-~~~La~IpGKfRk~IwIk~GD~VlV~~~ 82 (145)
.|....++..|+-.+ +.| -..+-.|...+|+.+=+..||.|.|.+.
T Consensus 55 ~V~~tI~g~~~~tsL~p~g~G~~~Lpvk~~vRka~g~~~GD~V~V~L~ 102 (104)
T 2d9r_A 55 RVNATFDGYPYTGYIVRMGLPCHILGLRQDIRRAIGKQPGDSVYVTLL 102 (104)
T ss_dssp EEEEEETTEEEEEEEEESSTTCEEEEECHHHHHHHTCCTTSEEEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCCcEEEEecHHHHHHcCCCCCCEEEEEEE
Confidence 677777777777766 345 4778888888999999999999999875
No 70
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=38.08 E-value=37 Score=23.01 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEeccc-cc------------ceEEEecCCEEEEEe
Q 032232 29 KEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGK-MH------------KKVWIAAGDIILVGL 81 (145)
Q Consensus 29 p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpGK-fR------------k~IwIk~GD~VlV~~ 81 (145)
|..+. ..|+|+++-+ +..+|.+.+|.+.. |+.. |+ -.--+++||+|.|..
T Consensus 31 ~~~~~~~~AvV~~v~~-~~~~v~~~~g~~~~--l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 31 GNSDDILAAVVLSATP-GAVEAFRKNGETIR--ITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp CTTTTCEEEEEEEEET-TEEEEEETTSCEEE--ECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEEE
T ss_pred CccCCeEEEEEEEeCC-CeEEEEEcCCCeEE--EcHHHChhhhhcccccccchhccCCCCCEEEEEE
Confidence 33344 6688888654 56899999987765 5542 22 112377888888874
No 71
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=37.89 E-value=73 Score=24.80 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=49.7
Q ss_pred cCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccc----cc--eEEEecCCEEEEEeccCCCC-----------ce
Q 032232 28 FKEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKM----HK--KVWIAAGDIILVGLRDYQDD-----------KA 89 (145)
Q Consensus 28 ~p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKf----Rk--~IwIk~GD~VlV~~~~~~~~-----------Kg 89 (145)
.|..|+ ++|+|+.+.+. .+.|.+.....=+.+++.=. .+ +=.+++||.|.+.....++. -|
T Consensus 54 ~p~~GDiV~G~V~~v~~~-~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~lG 132 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAAN-GWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICR 132 (229)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCE
T ss_pred cCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEccccCC
Confidence 577765 89999998765 67788876665555554311 11 33589999999877644321 12
Q ss_pred E----EEEEcChhHHHHHH
Q 032232 90 D----VILKYMPDEARLLK 104 (145)
Q Consensus 90 ~----Ii~ry~~devk~L~ 104 (145)
. +++..++.-++.|.
T Consensus 133 ~L~~G~v~~vs~~~v~rl~ 151 (229)
T 2ba0_A 133 PIRFGRIVAINPARVPRVI 151 (229)
T ss_dssp EESSSEEEECCGGGHHHHH
T ss_pred cccCCEEEEECHHHhHHHh
Confidence 2 46677777777765
No 72
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=37.78 E-value=77 Score=25.58 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=50.9
Q ss_pred CCCCeEEEEEEEeCCCceEEE-EeCCCCEEEEEecccccceEEEecCCEEEEEeccCCCCceEEEEEc
Q 032232 29 KEDGQEYAQVLRMLGNGRCEA-MCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKY 95 (145)
Q Consensus 29 p~e~q~ig~V~~~lG~~~~~V-~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry 95 (145)
+....+-|+|..+...+.| | .+.+|..=|+|++--++ .++.||.|-|-....+...++|-.-+
T Consensus 151 ~~G~~V~g~V~~i~~~G~f-V~~i~~g~~Glih~SEl~~---~l~~Gd~v~~~V~~id~~d~kI~LSl 214 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTF-VYLPENNMLGFIHPSERYA---EPRLGQVLDARVIGFREVDRTLNLSL 214 (285)
T ss_dssp CTTCEEEEEEEEEETTEEE-EEETTTTEEEEECGGGCSS---CCCTTCEEEEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEEEEEeCCcEE-EEEeCCCeEEEEEHHHccc---cCCCCCEEEEEEEEEECCCCeEEEEe
Confidence 3445689999999888777 6 88899999999887765 38999999999988877778875554
No 73
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=35.96 E-value=79 Score=23.94 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCCeEEEEEEEeC---CCceEEEEeCCC----CEEEEEecccccceEEEecCCEEEEEe
Q 032232 30 EDGQEYAQVLRML---GNGRCEAMCIDG----TKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 30 ~e~q~ig~V~~~l---G~~~~~V~~~dG----~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
.+++.+|+|+.++ .|..+.|..++| .++|.-.-..|=..|=+..| ++.|++
T Consensus 126 ~~g~~lG~V~~v~~~ganDvlvV~~~~g~~~~ke~LIPfv~~~V~~VDle~~-~I~V~~ 183 (187)
T 2f1l_A 126 QGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAG-EMRVDW 183 (187)
T ss_dssp TTSCEEEEEEEEECCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEETTTT-EEEECC
T ss_pred CCCCEEEEEEEEccCCCcEEEEEEeCCCCCCCcEEEEechHHhcCEEeCCCC-EEEEeC
Confidence 4678899999876 478889988887 66665544444334444333 444443
No 74
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=34.70 E-value=32 Score=26.24 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=20.9
Q ss_pred eEEEecCCEEEEEeccCC-CCceEEEEEcC
Q 032232 68 KVWIAAGDIILVGLRDYQ-DDKADVILKYM 96 (145)
Q Consensus 68 ~IwIk~GD~VlV~~~~~~-~~Kg~Ii~ry~ 96 (145)
.+-|+.||+|||+..+-+ +--|+|.+-|.
T Consensus 36 ~~~i~vGd~VLI~~~D~~~PyVAki~~lye 65 (163)
T 4dov_A 36 EIHIKVGQFVLIQGEDNKKPYVAKLIELFQ 65 (163)
T ss_dssp EEEEETTCEEEECCSSSSCCEEEEEEEEEE
T ss_pred CeEEeeCCEEEEeCCcccCChhHHHHHHHh
Confidence 677999999999887643 34666666544
No 75
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=33.88 E-value=35 Score=25.96 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=37.2
Q ss_pred CCCeEEEEEEEeC-CCc--eEEEEeCCCCEEEEEecccccceEEEecCCEEEEEec
Q 032232 30 EDGQEYAQVLRML-GNG--RCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82 (145)
Q Consensus 30 ~e~q~ig~V~~~l-G~~--~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~~ 82 (145)
..|+..|+|+++. ++. ...+.+.+|...+|.|+..- ..-+.+|+-|.+...
T Consensus 202 ~rN~l~g~V~~i~~~~~~~~v~l~l~~~~~l~a~it~~s--~l~L~~G~~v~a~ik 255 (265)
T 1b9m_A 202 ADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNE--ATSLQQGQNVTAYFN 255 (265)
T ss_dssp SSEEEEEEEEEEEECSSEEEEEEECTTSCEEEEEEEHHH--HTTCCTTCEEEEEEC
T ss_pred CCcEEEEEEEEEEECCceEEEEEEeCCCCEEEEEECChh--hcCCCCCCEEEEEEc
Confidence 3578999998874 333 35556668899999998765 667788888877654
No 76
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=33.85 E-value=57 Score=25.39 Aligned_cols=58 Identities=7% Similarity=0.016 Sum_probs=38.2
Q ss_pred ecCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecccc-cc--------eEEEecCCEEEEEeccCC
Q 032232 27 VFKEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKM-HK--------KVWIAAGDIILVGLRDYQ 85 (145)
Q Consensus 27 ~~p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKf-Rk--------~IwIk~GD~VlV~~~~~~ 85 (145)
..|..|+ ++|+|+.+... .+.|....+..=+.+++.=. ++ +=.+++||.|.+.....+
T Consensus 62 y~p~~GDiV~G~V~~v~~~-~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~ 129 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIM-NWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFD 129 (235)
T ss_dssp CCCCTTCCEEEEEEEECSS-EEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEEC
Confidence 3567665 89999998765 67788876555555543211 11 116899999998876544
No 77
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.78 E-value=67 Score=27.41 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=41.8
Q ss_pred CCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 30 EDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 30 ~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
.....+|.|++++..+.+-|....|.++++.+.+.+-+.. +++|+.|.+..
T Consensus 91 ~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~-~~~~~~v~~~~ 141 (428)
T 4b4t_K 91 SVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDREL-LKPSMSVALHR 141 (428)
T ss_dssp CSCEEEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTT-CCTTCEEEECS
T ss_pred CCCceeeEEEEEccCCeeEEecCCCCEEEEeccccccHhh-CCCCceeeeec
Confidence 3567899999999999999999999999999999886522 56777776653
No 78
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=33.12 E-value=88 Score=28.62 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=42.5
Q ss_pred CeEEEEEEEeCCCceEEEEeCC-CCEEEEEeccc-----c------------cc-----eEEEecCCEEEEEeccCCCC-
Q 032232 32 GQEYAQVLRMLGNGRCEAMCID-GTKRLCHIRGK-----M------------HK-----KVWIAAGDIILVGLRDYQDD- 87 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~d-G~~~La~IpGK-----f------------Rk-----~IwIk~GD~VlV~~~~~~~~- 87 (145)
....|+|+.+..++.| |.+++ |..-++|++.- . ++ ...++.||.|.|.....+..
T Consensus 671 ~~~~g~V~~V~~~G~f-V~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~ 749 (760)
T 2vnu_D 671 STETGYVIKVFNNGIV-VLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 749 (760)
T ss_dssp SEEEEEEEEEETTEEE-EEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC------
T ss_pred eEEEEEEEEEECCeEE-EEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECcc
Confidence 4789999998887766 88877 99999998531 1 12 36789999999999877655
Q ss_pred --ceEEEE
Q 032232 88 --KADVIL 93 (145)
Q Consensus 88 --Kg~Ii~ 93 (145)
+++|-.
T Consensus 750 ~~~~kI~l 757 (760)
T 2vnu_D 750 TSKRKAEL 757 (760)
T ss_dssp --CCEEEC
T ss_pred ccCCcEEE
Confidence 567643
No 79
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=32.88 E-value=26 Score=23.84 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=5.7
Q ss_pred EecCCEEEEEe
Q 032232 71 IAAGDIILVGL 81 (145)
Q Consensus 71 Ik~GD~VlV~~ 81 (145)
+..||+|++..
T Consensus 47 ~~~Gdivv~~~ 57 (109)
T 1kca_A 47 VEPGDFCIARL 57 (109)
T ss_dssp CCTTCEEEEEC
T ss_pred CCCCCEEEEEE
Confidence 45555555543
No 80
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=32.68 E-value=9.4 Score=23.22 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEecccccceEEEecCCEEEEEecc
Q 032232 59 CHIRGKMHKKVWIAAGDIILVGLRD 83 (145)
Q Consensus 59 a~IpGKfRk~IwIk~GD~VlV~~~~ 83 (145)
..||..+|+.+=|.+||.|.+...+
T Consensus 14 i~IPk~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 14 VTIPAKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp BCCCHHHHHHSCCCTTCEEEEEECS
T ss_pred EEeCHHHHHHcCcCCCCEEEEEEEC
Confidence 3589999999999999999998754
No 81
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=32.45 E-value=21 Score=24.95 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=11.1
Q ss_pred EEecCCEEEEEeccCCCCceEEE
Q 032232 70 WIAAGDIILVGLRDYQDDKADVI 92 (145)
Q Consensus 70 wIk~GD~VlV~~~~~~~~Kg~Ii 92 (145)
-|..||+|+|++.. ....|+|+
T Consensus 63 ~i~~Gd~v~vd~~~-~~~~Gdiv 84 (133)
T 2hnf_A 63 SFPDGMLILVDPEQ-AVEPGDFC 84 (133)
T ss_dssp CCCTTCEEEEETTS-CCCTTSEE
T ss_pred ccCCCCEEEEccCC-CCCCCCEE
Confidence 45566666666542 23344443
No 82
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=31.86 E-value=9.8 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.7
Q ss_pred EEecccccceEEEecCCEEEEEecc
Q 032232 59 CHIRGKMHKKVWIAAGDIILVGLRD 83 (145)
Q Consensus 59 a~IpGKfRk~IwIk~GD~VlV~~~~ 83 (145)
..||..+|+.+-|.+||.|.+...+
T Consensus 24 ItIPkeiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 24 VVIPIELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp EECCHHHHHHTTCCTTCEEEEEEET
T ss_pred EEeCHHHHHHcCCCCCCEEEEEEEC
Confidence 4589999999999999999998753
No 83
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=31.61 E-value=87 Score=23.29 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=35.7
Q ss_pred ecCCCCe-EEEEEEEeCCCceEEEEeCC----------CCEEEEEecc----cccc-eEEEecCCEEEEEecc
Q 032232 27 VFKEDGQ-EYAQVLRMLGNGRCEAMCID----------GTKRLCHIRG----KMHK-KVWIAAGDIILVGLRD 83 (145)
Q Consensus 27 ~~p~e~q-~ig~V~~~lG~~~~~V~~~d----------G~~~La~IpG----KfRk-~IwIk~GD~VlV~~~~ 83 (145)
..|+ |+ ++|+|+++... ...|.+.. +..=+.|++- +..+ +=.++.||.|.+....
T Consensus 54 y~p~-GdiV~G~V~~V~~~-ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNS-IALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CCCT-TCEEEEEEEEECSS-EEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred ccCC-CCEEEEEEEEEeCC-cEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 4567 65 89999998754 45566644 5555666542 1111 3458999999998775
No 84
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=31.49 E-value=1.1e+02 Score=20.07 Aligned_cols=45 Identities=16% Similarity=0.365 Sum_probs=29.4
Q ss_pred EEEEEEEeCC-----C--ceEEEEeC--CCCEEEEEecccccceEEEecCCEEEEEeccC
Q 032232 34 EYAQVLRMLG-----N--GRCEAMCI--DGTKRLCHIRGKMHKKVWIAAGDIILVGLRDY 84 (145)
Q Consensus 34 ~ig~V~~~lG-----~--~~~~V~~~--dG~~~La~IpGKfRk~IwIk~GD~VlV~~~~~ 84 (145)
..|+|++++| + .+.+|++- .|..++..+.|- |+.||++.+.-++-
T Consensus 8 ~~A~VikVlGRtGs~G~~tQVrv~~l~d~~r~i~RnVkGP------VR~GDIl~L~EtER 61 (67)
T 3u5c_c 8 TLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGP------VRENDILVLMESER 61 (67)
T ss_dssp EEEEEEEEEEEESSSCCEEEEEEEESSSCSCEEEEECSSC------CCTTCEEEESSSSC
T ss_pred EEEEEEEEecCCcCcccEEEEEEEEecCCCcEEEecccCC------cccCCEEEEehhhh
Confidence 6788888887 3 34444442 466666666665 56899888766543
No 85
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=30.11 E-value=33 Score=28.34 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=36.1
Q ss_pred ecCCCCe-EEEEEEEeCCCceEEEEeCCCCEEEEEecc-----cc-cce---------EEEecCCEEEEEecc
Q 032232 27 VFKEDGQ-EYAQVLRMLGNGRCEAMCIDGTKRLCHIRG-----KM-HKK---------VWIAAGDIILVGLRD 83 (145)
Q Consensus 27 ~~p~e~q-~ig~V~~~lG~~~~~V~~~dG~~~La~IpG-----Kf-Rk~---------IwIk~GD~VlV~~~~ 83 (145)
..|..|+ ++|+|+.+.+ ..+.|.+.....-+++++. -. |++ =.+++||+|.+....
T Consensus 91 Y~P~vGDvViG~Vt~V~~-~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVis 162 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQ-KRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQA 162 (308)
T ss_dssp CCCCSSBCCCEEEEEEET-TEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEE
T ss_pred cCCCCCCEEEEEEEEEeC-ceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEE
Confidence 3577776 8999999865 4577888765555667642 21 222 258999999866543
No 86
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=29.96 E-value=95 Score=25.03 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=43.9
Q ss_pred CeEEEEEEEeC-CCceEEEEeCC-CCEEEEEecc-cccceEEEecCCEEEEEeccCCCCceEEEEEcCh
Q 032232 32 GQEYAQVLRML-GNGRCEAMCID-GTKRLCHIRG-KMHKKVWIAAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 32 ~q~ig~V~~~l-G~~~~~V~~~d-G~~~La~IpG-KfRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~ 97 (145)
.-+.++|+.+. ..+.| |...- |...|++++- ...+..|.+.||.|.|.+ ..+. +++|+--+..
T Consensus 71 ~~~~g~V~~v~~~~GaF-VdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l-~iD~-~~Ri~ls~k~ 136 (285)
T 3go5_A 71 QFGWGRVTEVRKDLGVF-VDTGLPDKEIVVSLDILPELKELWPKKGDQLYIRL-EVDK-KDRIWGLLAY 136 (285)
T ss_dssp SCEEEEEEEEETTTEEE-EECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEE-EECT-TSCEEEEECC
T ss_pred CEEEEEEEEEccCceEE-EEECCCCcEEEEEHHHCCcccccccCCCCEEEEEE-EECC-CCcEEEEehh
Confidence 34889999997 45554 34443 4677888774 233467999999998886 4555 7899877753
No 87
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=29.95 E-value=1.5e+02 Score=21.16 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCEEEEEeccccc-----ceEEEecCCEEEEEeccC------CCCceEEEEEc----------ChhHHHHHHHcCCCC
Q 032232 53 DGTKRLCHIRGKMH-----KKVWIAAGDIILVGLRDY------QDDKADVILKY----------MPDEARLLKAYGELP 110 (145)
Q Consensus 53 dG~~~La~IpGKfR-----k~IwIk~GD~VlV~~~~~------~~~Kg~Ii~ry----------~~devk~L~k~g~wP 110 (145)
...+.+.-+.|++. +..-+.+||.|.+.+... ++....+++.+ +++++..|++...+-
T Consensus 63 ~~~E~~~Vl~G~~~v~v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~~d~p~~~~~~~l~~L~~~~~~~ 141 (156)
T 3kgz_A 63 AHVHAVMIHRGHGQCLVGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAARDRPQLPTADDLAELRKDERIA 141 (156)
T ss_dssp SSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESSCCCCBCCCHHHHHHHHTSHHHH
T ss_pred CCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCCCCcccCCCHHHHHHHHhCcchh
Confidence 34566667777775 367789999999877422 12344444443 577888888776443
No 88
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=29.57 E-value=97 Score=23.17 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCeEEEEEEEeC--C-CceEEEEe---CCC-CEEEEEecc-cccceEEEecCCEEEEE
Q 032232 31 DGQEYAQVLRML--G-NGRCEAMC---IDG-TKRLCHIRG-KMHKKVWIAAGDIILVG 80 (145)
Q Consensus 31 e~q~ig~V~~~l--G-~~~~~V~~---~dG-~~~La~IpG-KfRk~IwIk~GD~VlV~ 80 (145)
+++.+|+|+.++ | |..+.|.. ++| .++|.-. . .|=..|=+..| ++.|.
T Consensus 122 ~g~~lG~V~~v~~~gandvl~V~~~~~~~g~ke~LIPf-~~~~V~~VDl~~~-~I~v~ 177 (182)
T 2qgg_A 122 QEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPW-HKDVVQRVDLEAG-RIYVN 177 (182)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEECCSSSSSSCCEEEEC-CTTTEEEEETTTT-EEEES
T ss_pred CCcEEEEEEEEccCCCcEEEEEEeccCCCCCeEEEeec-ChhhEeEEECCCC-EEEEe
Confidence 578899999875 4 67788877 666 6666554 3 34334433333 44444
No 89
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=29.37 E-value=50 Score=25.55 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=29.6
Q ss_pred cccccc-eEEEecCCEEEEEeccCCCCceEEEEEcChhHHHHHHHcCCCCcccccc
Q 032232 62 RGKMHK-KVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116 (145)
Q Consensus 62 pGKfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~ 116 (145)
|.|+.+ .|||. .|+++|..- + +++++|..-|+..|.=|.+|...
T Consensus 142 ptki~~G~I~i~-~d~~v~k~G-------~---~v~~~~A~lL~~l~i~p~~~~l~ 186 (213)
T 3jsy_A 142 PAAIEKGKIAIK-EDKVVVKKG-------E---VVSPKLAAVLDRLGIKPIKVGLN 186 (213)
T ss_dssp CEEEETTEEEEC-SCEEEECTT-------S---BCCHHHHHHHHHTTCCCEEESCE
T ss_pred ceEeecCeEEEc-cceEEEecC-------C---CcCHHHHHHHHHcCCCcEEEEEE
Confidence 334444 56553 355555432 2 46899999999999999988653
No 90
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=29.00 E-value=35 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=18.8
Q ss_pred EEEeCCCceEEEEeCCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 38 VLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 38 V~~~lG~~~~~V~~~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
++.+.|.+..-....+|..+++.-.. .+..||+|++..
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~~------~~~~gdivv~~~ 66 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSAI------TASHGDIVIAAV 66 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETTS------CCCTTCEEEEEE
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcCC------CCCCCCEEEEEE
Confidence 34445555443334566665554221 255666666554
No 91
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=27.65 E-value=44 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=20.7
Q ss_pred EEecCCEEEEEeccCCCCceEEEEEcCh
Q 032232 70 WIAAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 70 wIk~GD~VlV~~~~~~~~Kg~Ii~ry~~ 97 (145)
.|+.||.|.|---.+-...|.|+..|..
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC
Confidence 4788999988755444567888888865
No 92
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=27.21 E-value=1.8e+02 Score=27.64 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=42.1
Q ss_pred CeEEEEEEEeCCCceEEEEeCC-CCEEEEEecccc-----------------cc-----eEEEecCCEEEEEeccCCC
Q 032232 32 GQEYAQVLRMLGNGRCEAMCID-GTKRLCHIRGKM-----------------HK-----KVWIAAGDIILVGLRDYQD 86 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~d-G~~~La~IpGKf-----------------Rk-----~IwIk~GD~VlV~~~~~~~ 86 (145)
....|+|+.+..++.| |.+++ |..-++|++.-- ++ ...++.||.|.|.....+.
T Consensus 888 e~~~g~V~~V~~~G~f-V~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~ 964 (977)
T 2wp8_J 888 STETGYVIKVFNNGIV-VLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMD 964 (977)
T ss_dssp CEEEEEEEEECSSEEE-EECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCC
T ss_pred eEEEEEEEEEcCCeEE-EEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcC
Confidence 3688999998887765 89987 999999987521 12 3678999999999986654
No 93
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=26.94 E-value=1.3e+02 Score=19.56 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=46.4
Q ss_pred eEEEEEEEeCCCceEEEEeCCCCEEEEEeccccc-----ceEEEecCCEEEEEeccC----CCC-ceEEEEEcChhHHHH
Q 032232 33 QEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMH-----KKVWIAAGDIILVGLRDY----QDD-KADVILKYMPDEARL 102 (145)
Q Consensus 33 q~ig~V~~~lG~~~~~V~~~dG~~~La~IpGKfR-----k~IwIk~GD~VlV~~~~~----~~~-Kg~Ii~ry~~devk~ 102 (145)
.+......+..+..+.-..-.+.+.+.-+.|++. ...-+.+||.+.+.+... ... .+.++..+.+..-.+
T Consensus 40 ~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~~p~~~d~ 119 (126)
T 4e2g_A 40 NLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEETRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIFSPPREDY 119 (126)
T ss_dssp SCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEEEEECTTEEEEECTTCCEEEECCTTCEEEEEEEESCCHHH
T ss_pred CeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEEEEeCCCCEEEECCCCcEEeEECCCCEEEEEEECCCCcch
Confidence 3444455555556566555566788888999987 478899999999876421 112 477777776654444
Q ss_pred H
Q 032232 103 L 103 (145)
Q Consensus 103 L 103 (145)
|
T Consensus 120 ~ 120 (126)
T 4e2g_A 120 A 120 (126)
T ss_dssp H
T ss_pred h
Confidence 4
No 94
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=26.80 E-value=47 Score=24.89 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=35.4
Q ss_pred CeEEEEEEEeCC------Cc----eEEEEe-CCCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 32 GQEYAQVLRMLG------NG----RCEAMC-IDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 32 ~q~ig~V~~~lG------~~----~~~V~~-~dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
-|.-|+|++..+ |+ ..+|++ .||.+++|.|||==.- -.|.+.|.|||.-
T Consensus 46 pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg~G~l-~~lqEh~~VLVrG 105 (142)
T 2xzm_L 46 SHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCL-NFLAENDEVLVAG 105 (142)
T ss_dssp SEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCSSSGG-GTCCTTCEEEEEE
T ss_pred CccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCCCCcc-cccccCCEEEEEe
Confidence 466677766553 32 357888 5999999999986431 2478899999986
No 95
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.54 E-value=76 Score=20.76 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.3
Q ss_pred CCe-EEEEEEEeCCCceEEEEeCCCCE
Q 032232 31 DGQ-EYAQVLRMLGNGRCEAMCIDGTK 56 (145)
Q Consensus 31 e~q-~ig~V~~~lG~~~~~V~~~dG~~ 56 (145)
+|+ --|+|+++.+++.|.|...|+.+
T Consensus 22 Dg~~Y~A~I~~v~~~~~~~V~f~Dyn~ 48 (74)
T 2equ_A 22 DCRYYPAKIEAINKEGTFTVQFYDGVI 48 (74)
T ss_dssp SSSEEEEEEEEESTTSSEEEEETTSCE
T ss_pred CCCEEEEEEEEECCCCEEEEEEecCCe
Confidence 555 67999999988899999999843
No 96
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=26.34 E-value=33 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=17.7
Q ss_pred EecCCEEEEEeccCCCCceEEEEEcC
Q 032232 71 IAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 71 Ik~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
|..||+|+|++.. ....|+|+....
T Consensus 160 i~~Gd~v~vd~~~-~~~~g~ivv~~~ 184 (236)
T 3bdn_A 160 FPDGMLILVDPEQ-AVEPGDFCIARL 184 (236)
T ss_dssp CCSSCEEEECCSS-CCCTTSEEEEES
T ss_pred CCCCCEEEECCCC-CCCCCcEEEEEE
Confidence 7888888888765 456677655544
No 97
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=25.14 E-value=2.1e+02 Score=21.08 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=40.2
Q ss_pred ecCCCCeEE----EEEEEeCCC-ceEEEEeCCCCEEEEEecccc----c--c-eEEEecCCEEEEEeccCCCCceEEEEE
Q 032232 27 VFKEDGQEY----AQVLRMLGN-GRCEAMCIDGTKRLCHIRGKM----H--K-KVWIAAGDIILVGLRDYQDDKADVILK 94 (145)
Q Consensus 27 ~~p~e~q~i----g~V~~~lG~-~~~~V~~~dG~~~La~IpGKf----R--k-~IwIk~GD~VlV~~~~~~~~Kg~Ii~r 94 (145)
..|.++.++ |+|+.+... .-+-++..+|.++|.|| |-= + . .++++.||.| ..|+.+-.
T Consensus 40 i~p~~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHi-GidTv~l~G~gF~~~V~~Gd~V---------~~G~~L~~ 109 (154)
T 2gpr_A 40 INPKSNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHI-GLDTVSLDGNGFESFVTQDQEV---------NAGDKLVT 109 (154)
T ss_dssp EEESSSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEEC-SSSGGGGTTCSEEECCCTTCEE---------CTTCEEEE
T ss_pred EEeCCCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEE-CcchhhcCCCceEEEEcCCCEE---------cCCCEEEE
Confidence 446666543 677776643 34455667899999998 621 1 1 4566666665 35666666
Q ss_pred cChhHHHH
Q 032232 95 YMPDEARL 102 (145)
Q Consensus 95 y~~devk~ 102 (145)
+..+.++.
T Consensus 110 ~d~~~i~~ 117 (154)
T 2gpr_A 110 VDLKSVAK 117 (154)
T ss_dssp ECHHHHHH
T ss_pred ECHHHHHh
Confidence 66555554
No 98
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.05 E-value=36 Score=25.15 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=24.9
Q ss_pred EEEEEecccccceEEEecCCEEEEEeccCCCCceEEEEEcC
Q 032232 56 KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM 96 (145)
Q Consensus 56 ~~La~IpGKfRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~ 96 (145)
.++.++.|-=...--|..||+|+|++.. ....|+|+....
T Consensus 109 ~f~l~v~GdSM~~p~i~~GD~viv~~~~-~~~~G~ivv~~~ 148 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICDGDLVLVRRQD-WAQNGDIVAAMV 148 (196)
T ss_dssp EEEEECCSSTTGGGTCCTTCEEEEEECS-CCCTTCEEEEEE
T ss_pred EEEEEEeCCCcCCCCCCCCCEEEEeccC-cCCCCCEEEEEE
Confidence 5555555543322358899999999874 445677655443
No 99
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.72 E-value=54 Score=24.70 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=34.9
Q ss_pred CeEEEEEEEeCC------Cc----eEEEEeC-CCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 32 GQEYAQVLRMLG------NG----RCEAMCI-DGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 32 ~q~ig~V~~~lG------~~----~~~V~~~-dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
-|.-|+|++..+ |+ ..+|++. ||.+++|.|||==.- -.|.+.|.|||.=
T Consensus 48 pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~Ghl-n~lqEh~~VLV~G 107 (147)
T 3j20_N 48 PQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAI-KFIDEHDEVIIEG 107 (147)
T ss_dssp SCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEEEECCSSSGG-GTCCTTCEEEEEE
T ss_pred CccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEEEEcCCchhh-cccccCCEEEEee
Confidence 366666665543 32 3568885 999999999985431 2488999999986
No 100
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=24.57 E-value=57 Score=28.11 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=34.0
Q ss_pred eEEEEEEEe---CCCc--eEEEEeCCCCEEEEEec--ccccceE-EEecCCEEEEEec
Q 032232 33 QEYAQVLRM---LGNG--RCEAMCIDGTKRLCHIR--GKMHKKV-WIAAGDIILVGLR 82 (145)
Q Consensus 33 q~ig~V~~~---lG~~--~~~V~~~dG~~~La~Ip--GKfRk~I-wIk~GD~VlV~~~ 82 (145)
-+.|+|... .-++ .|++.+..+....|... ++||+.+ +..+||.|.|-=+
T Consensus 288 ~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 288 RLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp EEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred EEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 367788755 3344 45555544566666666 7899955 7799999999754
No 101
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.42 E-value=64 Score=26.81 Aligned_cols=45 Identities=27% Similarity=0.449 Sum_probs=31.2
Q ss_pred ecccccc-eEEEecCCEEEEEeccCCCCceEEEEEcChhHHHHHHHcCCCCcccccc
Q 032232 61 IRGKMHK-KVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116 (145)
Q Consensus 61 IpGKfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~ 116 (145)
||.|+.+ .|||. .|+++|..- + ++++.|..-|+..|.=|.+|...
T Consensus 145 iptki~~G~I~i~-~d~~v~k~G-------~---~v~~~~A~lL~~l~i~p~~~~l~ 190 (339)
T 3j21_k 145 IPARIERGKVTIQ-KDTVVLKAG-------E---EITPELANILNALGIQPLEVGLD 190 (339)
T ss_dssp CCEEEETTEEEEC-SCEEEECTT-------S---BCCHHHHHHHHHHTCCCSCCSCE
T ss_pred CCeEeccCeEEEc-cceEEEecC-------C---CcCHHHHHHHHHcCCCcEEeeee
Confidence 4445555 66663 456666543 2 46899999999999999988653
No 102
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=23.78 E-value=22 Score=23.07 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCEEEEEecccccceEEEecCCEEEEEec
Q 032232 54 GTKRLCHIRGKMHKKVWIAAGDIILVGLR 82 (145)
Q Consensus 54 G~~~La~IpGKfRk~IwIk~GD~VlV~~~ 82 (145)
|...-.+||..+++.+=|.+||.|.|...
T Consensus 10 Gns~~v~iPk~~~~~lgl~~gd~v~i~~~ 38 (82)
T 1mvf_D 10 GNSPAVRIPATLMQALNLNIDDEVKIDLV 38 (82)
T ss_dssp TTEEEEECCHHHHHHTTCCTTCBEEEEEE
T ss_pred CCccEEEECHHHHHHcCCCCCCEEEEEEE
Confidence 55678899999999999999999999774
No 103
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=23.32 E-value=60 Score=24.41 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCeEEEEEEEeCC------C----ceEEEEeC-CCCEEEEEecccccceEEEecCCEEEEEe
Q 032232 31 DGQEYAQVLRMLG------N----GRCEAMCI-DGTKRLCHIRGKMHKKVWIAAGDIILVGL 81 (145)
Q Consensus 31 e~q~ig~V~~~lG------~----~~~~V~~~-dG~~~La~IpGKfRk~IwIk~GD~VlV~~ 81 (145)
--|.-|+|++..+ | -..+|++. ||.+++|.|||==.- -.|.+.|.|||.=
T Consensus 46 ~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~G~l-~~lqEh~~VLV~G 106 (145)
T 3u5c_X 46 SSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCL-NFVDENDEVLLAG 106 (145)
T ss_dssp SSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECCSSSCG-GGCCTTCEEEEEC
T ss_pred CCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeCCCCcc-ccCCcCCEEEEEe
Confidence 3577788877664 2 24789995 999999999986431 2378999999985
No 104
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.48 E-value=1.5e+02 Score=19.40 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=26.3
Q ss_pred CCCe-EEEEEEEeCC-CceEEEEeCCCCEEEEEe
Q 032232 30 EDGQ-EYAQVLRMLG-NGRCEAMCIDGTKRLCHI 61 (145)
Q Consensus 30 ~e~q-~ig~V~~~lG-~~~~~V~~~dG~~~La~I 61 (145)
++|. -.|.|+++.. .+.+.|+..||..+.++.
T Consensus 25 tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~ 58 (66)
T 2eqj_A 25 SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLW 58 (66)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEe
Confidence 4554 5799999998 499999999999987753
No 105
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=22.42 E-value=16 Score=25.07 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=21.9
Q ss_pred EEecccccceEEEecCCEEEEEeccC
Q 032232 59 CHIRGKMHKKVWIAAGDIILVGLRDY 84 (145)
Q Consensus 59 a~IpGKfRk~IwIk~GD~VlV~~~~~ 84 (145)
..||..+|+.+=|++||.|.+...++
T Consensus 62 itIPkeiR~~lgi~~Gd~l~~~~~~~ 87 (92)
T 2glw_A 62 VIIPKALRDVIGIKPGEVIEVLLLGH 87 (92)
T ss_dssp EECCHHHHHHHTCCTTCEEEEEEEEE
T ss_pred EECcHHHHHHcCCCCCCEEEEEEeCc
Confidence 35799999999999999999987643
No 106
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=22.27 E-value=1.5e+02 Score=29.09 Aligned_cols=71 Identities=7% Similarity=0.009 Sum_probs=54.8
Q ss_pred CCC-eEEEEEEEeCCCceEEEEeCCCCEEEEEecc---cc-cc--eEEEecCCEEEEEeccCCCCceEEEEEcChhHHH
Q 032232 30 EDG-QEYAQVLRMLGNGRCEAMCIDGTKRLCHIRG---KM-HK--KVWIAAGDIILVGLRDYQDDKADVILKYMPDEAR 101 (145)
Q Consensus 30 ~e~-q~ig~V~~~lG~~~~~V~~~dG~~~La~IpG---Kf-Rk--~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~devk 101 (145)
..| .+.|+|+.+...+.| |.+..|..=|+|++- .+ -+ .=-++.||.|.|.....+..+++|-.-+...+++
T Consensus 901 ~~G~iv~G~V~~V~~fGaF-V~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~ 978 (1219)
T 3psi_A 901 FKGSIIPVRVERFWHNDII-CTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVK 978 (1219)
T ss_dssp CTTCEEEEEEEEECSSCEE-EECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHHHC
T ss_pred CCCCEEEEEEEEEecceEE-EEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHHhc
Confidence 345 478999998887766 788889988888763 22 11 2238999999999998888899998888887775
No 107
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=21.95 E-value=71 Score=26.39 Aligned_cols=45 Identities=33% Similarity=0.283 Sum_probs=31.2
Q ss_pred ecccccc-eEEEecCCEEEEEeccCCCCceEEEEEcChhHHHHHHHcCCCCcccccc
Q 032232 61 IRGKMHK-KVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116 (145)
Q Consensus 61 IpGKfRk-~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~devk~L~k~g~wP~~f~~~ 116 (145)
||.|+.+ .|||. .|+++|..- + +++++|..-|+..|.=|.+|...
T Consensus 146 iptkI~kG~I~I~-~d~~v~k~G-------~---~v~~~~A~lL~~l~i~p~~f~l~ 191 (319)
T 3iz5_s 146 IPTKINKGTVEII-TPVELIKKG-------D---KVGSSESALLAKLGIRPFSYGLV 191 (319)
T ss_dssp CCEEEETTEEEEC-SCEEEECTT-------S---BCCHHHHHHHHHHTCCCEEESCE
T ss_pred CceEEecCeEEEc-CceEEEecC-------C---CcCHHHHHHHHHhCCCceEEEee
Confidence 4555555 66663 456665532 2 46899999999999999988653
No 108
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=21.94 E-value=16 Score=24.24 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=32.2
Q ss_pred CEEEEEecccccceEEEecCCEEEEEeccCCCCceEEEEEcCh
Q 032232 55 TKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMP 97 (145)
Q Consensus 55 ~~~La~IpGKfRk~IwIk~GD~VlV~~~~~~~~Kg~Ii~ry~~ 97 (145)
+++-..||.-+++.+=|++||.+.+... +..|+|+-.|.+
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~ve---~kdgeIvLcykR 62 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNME---QKDGDIVLSYKR 62 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEEE---EETTEEEEEEEE
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEEe---cCCCeEEEEehh
Confidence 4677789999999999999999999875 456778666654
No 109
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=21.77 E-value=1.7e+02 Score=23.20 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=18.4
Q ss_pred CCceEEEEeCCCC-EEEEEecccccceEEEecCCEE
Q 032232 43 GNGRCEAMCIDGT-KRLCHIRGKMHKKVWIAAGDII 77 (145)
Q Consensus 43 G~~~~~V~~~dG~-~~La~IpGKfRk~IwIk~GD~V 77 (145)
.++.+.|...+|. ++-|||.. +.|+.||.|
T Consensus 113 ~G~~ViI~Hg~G~~t~Y~HL~~-----i~Vk~Gd~V 143 (245)
T 3tuf_B 113 LGYVVEVEHADGLSTVYQSLSE-----VSVEQGDKV 143 (245)
T ss_dssp TEEEEEEECSTTEEEEEEEESE-----ESCCTTCEE
T ss_pred CceEEEEEeCCCEEEEEecCCc-----cccCCCCEE
Confidence 4556666777775 67788863 445555544
No 110
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=21.62 E-value=2.2e+02 Score=20.19 Aligned_cols=76 Identities=13% Similarity=0.043 Sum_probs=43.3
Q ss_pred CeEEEEEEEeCCCceEEEEeCCCCEEEEEecc-----c---c----cc--eEEEecCCEEEEEecc--CCCCceEE-EEE
Q 032232 32 GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRG-----K---M----HK--KVWIAAGDIILVGLRD--YQDDKADV-ILK 94 (145)
Q Consensus 32 ~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpG-----K---f----Rk--~IwIk~GD~VlV~~~~--~~~~Kg~I-i~r 94 (145)
...-|+|+.+.-+..+.|.+ +|.....+|.| . + +. +-.+..|..|.|+... ..+.-|++ .+.
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~-~g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~v 86 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY-KGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAYI 86 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE-TTEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEEE
T ss_pred ceeeEEEEEEECCCEEEEEe-CCcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEEE
Confidence 45679999999999999987 67655555433 1 1 11 1223347777777531 12334554 222
Q ss_pred c--ChhHHHHHHHcCC
Q 032232 95 Y--MPDEARLLKAYGE 108 (145)
Q Consensus 95 y--~~devk~L~k~g~ 108 (145)
| -.+=-.+|.++|+
T Consensus 87 ~~~g~~vn~~lv~~Gl 102 (143)
T 4eqp_A 87 YADGKMVNEALVRQGL 102 (143)
T ss_dssp EETTEEHHHHHHHTTS
T ss_pred EECCchHHHHHHHCCC
Confidence 2 2233456777776
No 111
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=21.54 E-value=64 Score=19.84 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.0
Q ss_pred ceEEEEEcChhHHHHHHH
Q 032232 88 KADVILKYMPDEARLLKA 105 (145)
Q Consensus 88 Kg~Ii~ry~~devk~L~k 105 (145)
+--++.|++++|+..|+.
T Consensus 13 tkpvvvrlypdeiealks 30 (53)
T 2kke_A 13 TKPVVVRLYPDEIEALKS 30 (53)
T ss_dssp SEEEEEEECHHHHHHHHT
T ss_pred CCceEEEeChhHHHHHHh
Confidence 556899999999999853
No 112
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=21.48 E-value=1.5e+02 Score=25.79 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=27.9
Q ss_pred CCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecc
Q 032232 29 KEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRG 63 (145)
Q Consensus 29 p~e~q~ig~V~~~lG~~~~~V~~~dG~~~La~IpG 63 (145)
....+..|+|+++.-+..+.|...+|.++..+|.|
T Consensus 20 ~~~~~~~~~V~~V~DGDTi~v~~~~g~~~~VRL~g 54 (570)
T 3bdl_A 20 HMDKQFVAKVMQVLNADAIVVKLNSGDYKTIHLSS 54 (570)
T ss_dssp -CCSEEEEEEEEEETTTEEEEECTTSCEEEEEETT
T ss_pred cCCcEEEEEEEEEccCCEEEEECCCCCEEEEEEEE
Confidence 34567899999999999999998899766666544
No 113
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=20.02 E-value=42 Score=26.03 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=8.0
Q ss_pred EecCCEEEEEe
Q 032232 71 IAAGDIILVGL 81 (145)
Q Consensus 71 Ik~GD~VlV~~ 81 (145)
+++||+|++..
T Consensus 50 ~~rGDIvvf~~ 60 (248)
T 1b12_A 50 PKRGDIVVFKY 60 (248)
T ss_dssp CCTTCEEEEEC
T ss_pred CCCCcEEEEEe
Confidence 56788777765
Done!