RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032233
(144 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 135 bits (342), Expect = 2e-39
Identities = 67/137 (48%), Positives = 91/137 (66%), Gaps = 2/137 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+GT
Sbjct: 332 GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGT 391
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQ-GTKLKDFVAT-TQSANFQSEIAKR 119
PALTSRG +E+DF KVA+F ++LTV+I+ +T LK+F Q +
Sbjct: 392 PALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRAL 451
Query: 120 CHDVEEYAKQFPTIGFE 136
+VE +A FP G
Sbjct: 452 RQEVESFAALFPLPGLP 468
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 132 bits (334), Expect = 2e-38
Identities = 70/137 (51%), Positives = 96/137 (70%), Gaps = 3/137 (2%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 328 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 387
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVAT-TQSANFQSEIAKRC 120
PALTSR F E+DF +V F D V + +++KS+T KL+DF + + + +A
Sbjct: 388 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLR 445
Query: 121 HDVEEYAKQFPTIGFEK 137
VE++A+ FP GF++
Sbjct: 446 QRVEQFARAFPMPGFDE 462
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 112 bits (281), Expect = 6e-31
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 23/131 (17%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
GY++VSGGT+NHL LV+L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 305 GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVG 364
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRC 120
TPA+T RGF E + ++A + + S N ++ I +
Sbjct: 365 TPAITRRGFKEAEAKELAGWMCDVLD----------------------SINDEAVIERIK 402
Query: 121 HDVEEYAKQFP 131
V + ++P
Sbjct: 403 GKVLDICARYP 413
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 108 bits (272), Expect = 9e-30
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRM 59
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRI 358
Query: 60 GTPALTSRGFVEEDFAKVAYFFDAAVK 86
GT A+T+RGF E+ ++A +K
Sbjct: 359 GTAAVTTRGFGLEEMDEIAAIIGLVLK 385
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 48.4 bits (114), Expect = 5e-08
Identities = 13/121 (10%), Positives = 27/121 (22%), Gaps = 16/121 (13%)
Query: 1 MGYELVSGGTENHLVLVNLKNKGID--------GSRVEKVLEAVHIAANKNTVPGDVSAM 52
+V H V+ + ++ + I A +
Sbjct: 342 EEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDP 401
Query: 53 VPGGIRMGTP-----ALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET---QGTKLKDFV 104
G + + + + F + IK T + L+ F
Sbjct: 402 KTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFT 461
Query: 105 A 105
A
Sbjct: 462 A 462
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 41.1 bits (95), Expect = 1e-05
Identities = 9/108 (8%), Positives = 28/108 (25%), Gaps = 15/108 (13%)
Query: 10 TENHLVLVNLKNKGI-DGSRVEKVLEAVHIAANKNTVP--------GDVSAMVPGGIRMG 60
+ ++ + + + + + A + G+ +R+
Sbjct: 356 VDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLT 415
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET---QGTKLKDFVA 105
R + + +A + +K + L+ F A
Sbjct: 416 IAR---RVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLRHFTA 460
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 25.1 bits (55), Expect = 3.9
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 70 VEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIA 117
V + V + KL K+ + GT + A + AN+ A
Sbjct: 27 VTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDPCA 74
>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex
aeolicus [TaxId: 63363]}
Length = 141
Score = 24.6 bits (53), Expect = 4.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 15 VLVNLKNKGIDGSRVEKVLEAVHIAANKNTV 45
VLV LK + + ++EK E A N V
Sbjct: 4 VLVKLKKRKVRKDKIEKWAELALSALGLNNV 34
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA
homologue) {Thermus thermophilus [TaxId: 274]}
Length = 95
Score = 24.0 bits (52), Expect = 4.6
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVA 105
T A+ R +VE+ A++ + D + V + K A
Sbjct: 14 TDAI--RDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARA 56
>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major
capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
Length = 103
Score = 23.8 bits (51), Expect = 6.6
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 36 VHIAANKNTVPGDVSAMVPGGIRMGTPALT 65
V I A + +A GI TPALT
Sbjct: 1 VRIFAGNDPA---HTATGSSGISSPTPALT 27
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611
{Colwellia psychrerythraea [TaxId: 28229]}
Length = 62
Score = 22.7 bits (49), Expect = 6.8
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS-----RGFVEEDFAKV 77
RVEK+++ + K V D++ M G T + R V ++F K
Sbjct: 5 RVEKIIQDLLDVLVKEEVTPDLALMCLGN--AVTNIIAQVPESKRVAVVDNFTKA 57
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId:
1061]}
Length = 654
Score = 24.1 bits (51), Expect = 9.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 51 AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83
A+ G P + +RG VE A A+ +
Sbjct: 9 ALAADSRFEGGPVIWARGDVETALAGAAHLAEG 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.362
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 500,839
Number of extensions: 20076
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 16
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.8 bits)