Query 032234
Match_columns 144
No_of_seqs 174 out of 1397
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 4.7E-18 1E-22 153.2 14.0 125 5-130 144-279 (1153)
2 PF00931 NB-ARC: NB-ARC domain 99.5 2E-13 4.3E-18 105.5 9.0 75 51-129 1-77 (287)
3 KOG4658 Apoptotic ATPase [Sign 99.5 2.2E-13 4.8E-18 120.0 9.7 76 49-130 161-239 (889)
4 PF05496 RuvB_N: Holliday junc 98.8 1.5E-08 3.3E-13 76.7 7.0 63 33-98 14-79 (233)
5 PF13191 AAA_16: AAA ATPase do 98.7 8.2E-08 1.8E-12 69.2 7.4 50 47-96 1-51 (185)
6 COG2256 MGS1 ATPase related to 98.6 1E-07 2.2E-12 77.3 6.1 81 32-122 13-96 (436)
7 TIGR02928 orc1/cdc6 family rep 98.6 3.2E-07 7E-12 73.4 8.8 78 45-126 14-99 (365)
8 PRK00411 cdc6 cell division co 98.6 6.3E-07 1.4E-11 72.5 10.3 81 44-128 28-112 (394)
9 PTZ00202 tuzin; Provisional 98.5 1.1E-06 2.3E-11 72.8 10.4 90 30-129 240-336 (550)
10 PRK13342 recombination factor 98.4 6E-07 1.3E-11 73.6 7.0 59 34-97 3-64 (413)
11 KOG2028 ATPase related to the 98.4 6.1E-07 1.3E-11 72.5 6.5 100 33-139 128-235 (554)
12 PRK09376 rho transcription ter 98.3 7.4E-07 1.6E-11 72.6 5.3 51 71-123 171-222 (416)
13 PRK00080 ruvB Holliday junctio 98.3 1.2E-06 2.6E-11 69.6 6.0 59 35-96 17-78 (328)
14 cd00009 AAA The AAA+ (ATPases 98.2 6.4E-06 1.4E-10 56.0 7.5 53 50-104 2-54 (151)
15 cd01128 rho_factor Transcripti 98.2 2E-06 4.3E-11 66.3 5.4 51 70-122 17-68 (249)
16 TIGR02639 ClpA ATP-dependent C 98.2 1.1E-05 2.3E-10 70.7 10.5 110 24-138 163-286 (731)
17 COG2255 RuvB Holliday junction 98.2 2.2E-06 4.8E-11 67.0 5.4 59 36-97 19-80 (332)
18 PRK08118 topology modulation p 98.2 1.8E-06 4E-11 62.5 4.5 51 71-122 3-56 (167)
19 PF01637 Arch_ATPase: Archaeal 98.2 7E-07 1.5E-11 66.2 2.3 55 48-104 1-55 (234)
20 TIGR00635 ruvB Holliday juncti 98.2 2E-06 4.3E-11 67.4 4.3 51 46-96 4-57 (305)
21 PRK12402 replication factor C 98.2 3E-06 6.4E-11 66.9 5.2 58 33-95 5-62 (337)
22 PLN03025 replication factor C 98.1 2.9E-06 6.2E-11 67.3 4.7 57 33-94 3-59 (319)
23 CHL00095 clpC Clp protease ATP 98.1 2.4E-05 5.2E-10 69.4 10.7 109 25-138 161-283 (821)
24 PRK10865 protein disaggregatio 98.1 2.9E-05 6.4E-10 69.1 10.6 99 25-128 160-268 (857)
25 TIGR03345 VI_ClpV1 type VI sec 98.1 3.5E-05 7.5E-10 68.6 11.0 99 24-127 168-276 (852)
26 PRK13341 recombination factor 98.1 5.2E-06 1.1E-10 72.6 5.0 60 33-97 18-80 (725)
27 PF13401 AAA_22: AAA domain; P 98.0 1.4E-05 3E-10 54.6 5.9 58 69-130 4-66 (131)
28 smart00763 AAA_PrkA PrkA AAA d 98.0 8E-06 1.7E-10 65.9 5.0 57 46-102 51-118 (361)
29 PRK04195 replication factor C 98.0 6.1E-06 1.3E-10 69.0 4.4 59 33-94 4-64 (482)
30 PRK00440 rfc replication facto 98.0 1E-05 2.2E-10 63.3 5.2 58 33-95 7-64 (319)
31 PRK14962 DNA polymerase III su 98.0 1.2E-05 2.5E-10 67.3 5.7 59 32-94 3-61 (472)
32 TIGR03346 chaperone_ClpB ATP-d 98.0 6E-05 1.3E-09 67.2 10.5 109 25-138 155-278 (852)
33 TIGR00767 rho transcription te 97.9 1.3E-05 2.8E-10 65.6 5.0 56 70-127 169-225 (415)
34 PRK14961 DNA polymerase III su 97.9 2.4E-05 5.1E-10 63.2 6.5 58 33-94 6-63 (363)
35 COG1474 CDC6 Cdc6-related prot 97.9 0.0001 2.2E-09 59.9 9.8 79 46-128 17-99 (366)
36 PF13207 AAA_17: AAA domain; P 97.9 1E-05 2.2E-10 54.7 3.5 24 71-94 1-24 (121)
37 PHA02544 44 clamp loader, smal 97.9 1.4E-05 3.1E-10 62.8 4.7 56 35-94 13-68 (316)
38 PRK14955 DNA polymerase III su 97.9 2.6E-05 5.6E-10 63.8 5.6 59 33-95 6-64 (397)
39 TIGR03015 pepcterm_ATPase puta 97.9 5.2E-05 1.1E-09 58.0 6.9 26 69-94 43-68 (269)
40 PRK06696 uridine kinase; Valid 97.9 5.8E-05 1.3E-09 56.9 6.9 45 51-95 3-48 (223)
41 PRK07261 topology modulation p 97.8 5.1E-05 1.1E-09 55.1 6.3 34 71-104 2-38 (171)
42 TIGR01242 26Sp45 26S proteasom 97.8 2.1E-05 4.5E-10 63.5 4.3 52 46-97 122-184 (364)
43 PRK14957 DNA polymerase III su 97.8 9.4E-05 2E-09 62.9 8.2 58 33-94 6-63 (546)
44 TIGR03420 DnaA_homol_Hda DnaA 97.8 7.6E-05 1.6E-09 55.7 6.9 51 51-103 22-72 (226)
45 PRK14949 DNA polymerase III su 97.8 0.0001 2.2E-09 65.6 8.4 59 33-95 6-64 (944)
46 PRK05896 DNA polymerase III su 97.8 4.4E-05 9.5E-10 65.4 5.7 59 32-94 5-63 (605)
47 PRK14956 DNA polymerase III su 97.8 4.4E-05 9.6E-10 63.8 5.4 59 33-95 8-66 (484)
48 PRK07667 uridine kinase; Provi 97.8 8.7E-05 1.9E-09 54.8 6.4 38 57-94 5-42 (193)
49 PRK07003 DNA polymerase III su 97.8 0.00011 2.3E-09 64.5 7.8 58 33-94 6-63 (830)
50 PRK14958 DNA polymerase III su 97.8 0.00012 2.6E-09 61.8 7.9 58 33-94 6-63 (509)
51 PRK14963 DNA polymerase III su 97.7 4.9E-05 1.1E-09 64.1 5.3 58 33-94 4-61 (504)
52 PRK11331 5-methylcytosine-spec 97.7 8E-05 1.7E-09 61.8 6.4 55 46-104 175-231 (459)
53 KOG0991 Replication factor C, 97.7 4.1E-05 9E-10 58.8 4.3 81 33-122 17-99 (333)
54 PTZ00112 origin recognition co 97.7 0.00035 7.6E-09 62.4 10.5 51 44-94 753-806 (1164)
55 PRK11034 clpA ATP-dependent Cl 97.7 0.00033 7.2E-09 61.7 10.4 64 25-93 168-231 (758)
56 TIGR02903 spore_lon_C ATP-depe 97.7 6E-05 1.3E-09 64.9 5.7 46 46-93 154-199 (615)
57 PF05729 NACHT: NACHT domain 97.7 7.2E-05 1.6E-09 52.5 5.2 27 70-96 1-27 (166)
58 PRK03992 proteasome-activating 97.7 4.4E-05 9.5E-10 62.3 4.6 51 46-96 131-192 (389)
59 TIGR02881 spore_V_K stage V sp 97.7 5.5E-05 1.2E-09 58.3 4.8 48 46-93 6-66 (261)
60 PF00004 AAA: ATPase family as 97.7 3.1E-05 6.7E-10 52.6 3.1 25 72-96 1-25 (132)
61 PRK06893 DNA replication initi 97.7 0.00013 2.8E-09 55.3 6.6 36 69-104 39-74 (229)
62 PRK14960 DNA polymerase III su 97.7 6.6E-05 1.4E-09 64.9 5.4 58 33-94 5-62 (702)
63 TIGR02902 spore_lonB ATP-depen 97.7 8.5E-05 1.8E-09 63.0 6.0 69 20-93 37-110 (531)
64 PRK12323 DNA polymerase III su 97.7 0.00016 3.5E-09 62.5 7.5 58 33-94 6-63 (700)
65 COG1618 Predicted nucleotide k 97.7 6.4E-05 1.4E-09 54.4 4.1 37 70-106 6-44 (179)
66 PRK05541 adenylylsulfate kinas 97.6 8.5E-05 1.8E-09 53.7 4.7 35 69-103 7-41 (176)
67 PRK14964 DNA polymerase III su 97.6 9.3E-05 2E-09 62.2 5.4 56 34-93 4-59 (491)
68 PRK06645 DNA polymerase III su 97.6 9.3E-05 2E-09 62.4 5.4 58 33-94 11-68 (507)
69 PRK14954 DNA polymerase III su 97.6 0.0001 2.3E-09 63.5 5.7 58 33-94 6-63 (620)
70 smart00382 AAA ATPases associa 97.6 7.9E-05 1.7E-09 49.9 4.0 35 70-104 3-37 (148)
71 PF13238 AAA_18: AAA domain; P 97.6 5.8E-05 1.3E-09 51.0 3.3 22 72-93 1-22 (129)
72 KOG2543 Origin recognition com 97.6 0.00049 1.1E-08 56.0 9.0 76 45-127 5-81 (438)
73 TIGR02397 dnaX_nterm DNA polym 97.6 0.00015 3.2E-09 57.8 6.0 58 33-94 4-61 (355)
74 PRK14951 DNA polymerase III su 97.6 0.00012 2.5E-09 63.1 5.7 58 33-94 6-63 (618)
75 PRK08903 DnaA regulatory inact 97.6 0.00024 5.3E-09 53.3 6.8 47 46-93 18-66 (227)
76 PRK14970 DNA polymerase III su 97.6 0.00015 3.2E-09 58.4 5.9 58 33-94 7-64 (367)
77 PRK12377 putative replication 97.6 0.00068 1.5E-08 52.3 9.1 36 69-104 101-136 (248)
78 PRK14952 DNA polymerase III su 97.6 0.00013 2.8E-09 62.6 5.6 57 34-94 4-60 (584)
79 PF00485 PRK: Phosphoribulokin 97.6 7.7E-05 1.7E-09 55.0 3.7 25 71-95 1-25 (194)
80 PRK09111 DNA polymerase III su 97.6 0.00014 3E-09 62.5 5.5 58 33-94 14-71 (598)
81 COG0572 Udk Uridine kinase [Nu 97.5 0.00014 2.9E-09 55.0 4.7 30 67-96 6-35 (218)
82 PTZ00301 uridine kinase; Provi 97.5 0.00012 2.6E-09 55.0 4.5 27 69-95 3-29 (210)
83 PRK08727 hypothetical protein; 97.5 0.00063 1.4E-08 51.7 8.4 36 69-104 41-76 (233)
84 PRK14969 DNA polymerase III su 97.5 0.00015 3.3E-09 61.4 5.5 58 33-94 6-63 (527)
85 TIGR00602 rad24 checkpoint pro 97.5 0.00013 2.9E-09 63.0 5.0 59 33-94 74-135 (637)
86 PRK15455 PrkA family serine pr 97.5 0.00016 3.4E-09 61.8 5.3 50 47-96 77-130 (644)
87 PRK14950 DNA polymerase III su 97.5 0.00019 4.1E-09 61.5 5.9 58 33-94 6-63 (585)
88 PRK08691 DNA polymerase III su 97.5 0.00014 3.1E-09 63.1 5.1 57 33-93 6-62 (709)
89 PRK07994 DNA polymerase III su 97.5 0.00021 4.6E-09 61.8 5.9 59 33-95 6-64 (647)
90 PRK06305 DNA polymerase III su 97.5 0.00026 5.5E-09 59.0 6.2 59 32-94 6-64 (451)
91 PTZ00361 26 proteosome regulat 97.5 0.0002 4.3E-09 59.5 5.4 52 46-97 183-245 (438)
92 PF13173 AAA_14: AAA domain 97.5 0.00034 7.4E-09 48.1 5.7 35 69-104 2-36 (128)
93 PRK05480 uridine/cytidine kina 97.5 0.00014 2.9E-09 54.1 4.0 26 68-93 5-30 (209)
94 PRK03839 putative kinase; Prov 97.5 0.00011 2.4E-09 53.3 3.3 26 71-96 2-27 (180)
95 TIGR03689 pup_AAA proteasome A 97.4 0.00091 2E-08 56.5 8.9 51 46-96 182-243 (512)
96 PRK08084 DNA replication initi 97.4 0.00055 1.2E-08 52.1 6.9 45 48-94 25-70 (235)
97 TIGR00064 ftsY signal recognit 97.4 0.00083 1.8E-08 52.4 8.0 29 68-96 71-99 (272)
98 PF01695 IstB_IS21: IstB-like 97.4 0.00049 1.1E-08 50.3 6.3 36 69-104 47-82 (178)
99 PF13671 AAA_33: AAA domain; P 97.4 0.00015 3.3E-09 50.1 3.5 23 71-93 1-23 (143)
100 PRK08233 hypothetical protein; 97.4 0.00014 3.1E-09 52.3 3.3 26 69-94 3-28 (182)
101 PRK06217 hypothetical protein; 97.4 0.00051 1.1E-08 50.1 6.3 34 71-104 3-39 (183)
102 PRK06762 hypothetical protein; 97.4 0.00016 3.6E-09 51.6 3.6 24 70-93 3-26 (166)
103 KOG0989 Replication factor C, 97.4 0.00029 6.2E-09 55.8 5.1 64 33-101 26-91 (346)
104 COG0466 Lon ATP-dependent Lon 97.4 0.00025 5.5E-09 61.5 5.2 52 47-98 324-379 (782)
105 PRK14953 DNA polymerase III su 97.4 0.00035 7.7E-09 58.7 5.9 58 33-94 6-63 (486)
106 PRK07764 DNA polymerase III su 97.4 0.00026 5.5E-09 62.9 5.2 58 33-94 5-62 (824)
107 KOG0744 AAA+-type ATPase [Post 97.4 0.00025 5.4E-09 56.7 4.5 35 70-104 178-216 (423)
108 TIGR02237 recomb_radB DNA repa 97.4 0.00068 1.5E-08 50.2 6.6 37 68-104 11-47 (209)
109 PF07728 AAA_5: AAA domain (dy 97.4 0.00039 8.5E-09 48.1 5.0 22 72-93 2-23 (139)
110 PF13086 AAA_11: AAA domain; P 97.4 0.00093 2E-08 49.3 7.3 50 71-124 19-75 (236)
111 PF05673 DUF815: Protein of un 97.4 0.00089 1.9E-08 51.5 7.2 52 42-93 23-76 (249)
112 TIGR01360 aden_kin_iso1 adenyl 97.4 0.0002 4.4E-09 51.8 3.5 26 68-93 2-27 (188)
113 TIGR00235 udk uridine kinase. 97.3 0.00026 5.6E-09 52.7 4.1 27 68-94 5-31 (207)
114 PRK00131 aroK shikimate kinase 97.3 0.00021 4.6E-09 50.9 3.4 26 70-95 5-30 (175)
115 PRK07133 DNA polymerase III su 97.3 0.00034 7.3E-09 61.2 5.2 58 33-94 8-65 (725)
116 PRK13947 shikimate kinase; Pro 97.3 0.00019 4.1E-09 51.4 3.1 27 71-97 3-29 (171)
117 PTZ00454 26S protease regulato 97.3 0.00041 8.8E-09 56.9 5.3 51 46-96 145-206 (398)
118 PRK05642 DNA replication initi 97.3 0.0022 4.8E-08 48.8 9.1 36 69-104 45-80 (234)
119 PF06309 Torsin: Torsin; Inte 97.3 0.0024 5.1E-08 44.4 8.3 78 47-126 26-113 (127)
120 PRK05563 DNA polymerase III su 97.3 0.0005 1.1E-08 58.7 5.9 58 33-94 6-63 (559)
121 PRK06647 DNA polymerase III su 97.3 0.00042 9.2E-09 59.2 5.5 58 33-94 6-63 (563)
122 TIGR00390 hslU ATP-dependent p 97.3 0.001 2.2E-08 55.0 7.4 52 46-97 12-75 (441)
123 PRK14965 DNA polymerase III su 97.3 0.00053 1.2E-08 58.7 5.8 58 33-94 6-63 (576)
124 PRK00625 shikimate kinase; Pro 97.3 0.00024 5.2E-09 51.8 3.2 25 71-95 2-26 (173)
125 PRK04040 adenylate kinase; Pro 97.3 0.00034 7.4E-09 51.6 4.0 25 70-94 3-27 (188)
126 PRK09270 nucleoside triphospha 97.3 0.00072 1.6E-08 51.1 5.7 30 66-95 30-59 (229)
127 COG1222 RPT1 ATP-dependent 26S 97.3 0.00044 9.6E-09 55.8 4.7 48 46-93 151-209 (406)
128 PRK14948 DNA polymerase III su 97.2 0.00059 1.3E-08 58.9 5.7 60 32-95 5-64 (620)
129 PF00158 Sigma54_activat: Sigm 97.2 0.0011 2.4E-08 48.1 6.4 47 48-94 1-47 (168)
130 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0008 1.7E-08 57.8 6.3 56 46-101 190-255 (802)
131 PF00910 RNA_helicase: RNA hel 97.2 0.00023 4.9E-09 47.7 2.5 23 72-94 1-23 (107)
132 KOG2004 Mitochondrial ATP-depe 97.2 0.00055 1.2E-08 59.6 5.3 52 47-98 412-467 (906)
133 PRK06526 transposase; Provisio 97.2 0.00048 1E-08 53.2 4.5 35 69-103 98-132 (254)
134 PRK14959 DNA polymerase III su 97.2 0.00055 1.2E-08 59.0 5.2 58 33-94 6-63 (624)
135 PRK08181 transposase; Validate 97.2 0.00087 1.9E-08 52.3 5.9 35 70-104 107-141 (269)
136 cd02023 UMPK Uridine monophosp 97.2 0.00025 5.4E-09 52.2 2.7 23 71-93 1-23 (198)
137 PF01583 APS_kinase: Adenylyls 97.2 0.00072 1.6E-08 48.7 5.0 34 70-103 3-36 (156)
138 PRK05201 hslU ATP-dependent pr 97.2 0.00073 1.6E-08 55.9 5.6 52 46-97 15-78 (443)
139 cd02019 NK Nucleoside/nucleoti 97.2 0.00033 7.2E-09 43.3 2.8 23 71-93 1-23 (69)
140 PRK06547 hypothetical protein; 97.2 0.00074 1.6E-08 49.2 5.1 28 66-93 12-39 (172)
141 CHL00181 cbbX CbbX; Provisiona 97.2 0.00071 1.5E-08 53.1 5.3 24 70-93 60-83 (287)
142 PRK09361 radB DNA repair and r 97.2 0.0019 4.1E-08 48.4 7.4 47 58-104 12-58 (225)
143 PF07726 AAA_3: ATPase family 97.2 0.00028 6.1E-09 49.2 2.5 28 72-99 2-29 (131)
144 PRK07952 DNA replication prote 97.2 0.0013 2.8E-08 50.6 6.5 49 56-104 86-134 (244)
145 cd02028 UMPK_like Uridine mono 97.2 0.00055 1.2E-08 50.0 4.2 24 71-94 1-24 (179)
146 COG1223 Predicted ATPase (AAA+ 97.2 0.00048 1E-08 53.8 4.0 47 46-92 121-174 (368)
147 TIGR00763 lon ATP-dependent pr 97.2 0.0007 1.5E-08 59.9 5.5 51 47-97 321-375 (775)
148 cd02020 CMPK Cytidine monophos 97.2 0.00034 7.3E-09 48.5 2.9 25 71-95 1-25 (147)
149 PRK11889 flhF flagellar biosyn 97.2 0.0024 5.2E-08 52.6 8.2 27 68-94 240-266 (436)
150 cd01394 radB RadB. The archaea 97.2 0.0024 5.2E-08 47.6 7.7 47 58-104 8-54 (218)
151 cd00227 CPT Chloramphenicol (C 97.2 0.00041 9E-09 50.2 3.4 25 70-94 3-27 (175)
152 PRK00889 adenylylsulfate kinas 97.2 0.0008 1.7E-08 48.5 4.8 26 69-94 4-29 (175)
153 PRK14974 cell division protein 97.1 0.0039 8.5E-08 50.1 9.1 29 68-96 139-167 (336)
154 TIGR02880 cbbX_cfxQ probable R 97.1 0.00094 2E-08 52.3 5.5 47 47-93 23-82 (284)
155 PRK08451 DNA polymerase III su 97.1 0.0009 2E-08 56.8 5.7 56 34-93 5-60 (535)
156 PRK05342 clpX ATP-dependent pr 97.1 0.00076 1.6E-08 55.6 5.1 51 46-96 71-135 (412)
157 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00034 7.4E-09 50.6 2.8 23 71-93 1-23 (183)
158 PRK13765 ATP-dependent proteas 97.1 0.00093 2E-08 57.9 5.8 70 46-124 31-101 (637)
159 cd00464 SK Shikimate kinase (S 97.1 0.00042 9.1E-09 48.5 3.1 24 72-95 2-25 (154)
160 cd02025 PanK Pantothenate kina 97.1 0.00034 7.4E-09 52.8 2.8 24 71-94 1-24 (220)
161 cd01120 RecA-like_NTPases RecA 97.1 0.00067 1.5E-08 47.2 4.0 32 72-103 2-33 (165)
162 PHA00729 NTP-binding motif con 97.1 0.00061 1.3E-08 51.8 4.0 27 68-94 16-42 (226)
163 TIGR01243 CDC48 AAA family ATP 97.1 0.00067 1.5E-08 59.5 4.8 51 46-96 178-239 (733)
164 PRK13949 shikimate kinase; Pro 97.1 0.00044 9.5E-09 50.1 3.1 26 71-96 3-28 (169)
165 PRK06921 hypothetical protein; 97.1 0.0011 2.5E-08 51.4 5.5 36 69-104 117-153 (266)
166 PF00308 Bac_DnaA: Bacterial d 97.1 0.0037 8E-08 47.2 8.1 37 68-104 33-71 (219)
167 TIGR01241 FtsH_fam ATP-depende 97.1 0.0008 1.7E-08 56.5 4.8 49 46-94 55-113 (495)
168 TIGR00764 lon_rel lon-related 97.1 0.0021 4.6E-08 55.4 7.5 55 46-104 18-73 (608)
169 PRK05564 DNA polymerase III su 97.1 0.0034 7.3E-08 49.6 8.1 47 46-93 4-50 (313)
170 PLN00020 ribulose bisphosphate 97.1 0.0005 1.1E-08 56.0 3.3 31 67-97 146-176 (413)
171 PRK07940 DNA polymerase III su 97.1 0.0012 2.6E-08 54.1 5.6 49 46-94 5-61 (394)
172 PRK06620 hypothetical protein; 97.1 0.0012 2.5E-08 49.8 5.1 24 70-93 45-68 (214)
173 TIGR02322 phosphon_PhnN phosph 97.1 0.00054 1.2E-08 49.5 3.2 24 70-93 2-25 (179)
174 PRK03846 adenylylsulfate kinas 97.1 0.0012 2.7E-08 48.7 5.1 28 67-94 22-49 (198)
175 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0023 4.9E-08 48.1 6.6 37 68-104 18-60 (235)
176 PRK13946 shikimate kinase; Pro 97.0 0.00055 1.2E-08 50.0 3.1 28 69-96 10-37 (184)
177 cd01393 recA_like RecA is a b 97.0 0.0027 5.8E-08 47.4 6.9 47 58-104 8-60 (226)
178 KOG0738 AAA+-type ATPase [Post 97.0 0.0022 4.8E-08 52.5 6.7 52 46-97 212-273 (491)
179 PF03205 MobB: Molybdopterin g 97.0 0.0013 2.8E-08 46.4 4.8 34 70-103 1-35 (140)
180 PRK04841 transcriptional regul 97.0 0.003 6.5E-08 56.0 8.2 54 42-104 10-63 (903)
181 cd02024 NRK1 Nicotinamide ribo 97.0 0.0005 1.1E-08 50.9 2.7 23 71-93 1-23 (187)
182 COG0467 RAD55 RecA-superfamily 97.0 0.0016 3.5E-08 50.0 5.6 38 67-104 21-58 (260)
183 cd02021 GntK Gluconate kinase 97.0 0.0005 1.1E-08 48.2 2.5 23 71-93 1-23 (150)
184 PRK10416 signal recognition pa 97.0 0.0029 6.3E-08 50.5 7.1 28 68-95 113-140 (318)
185 PRK00149 dnaA chromosomal repl 97.0 0.0032 6.8E-08 52.3 7.6 29 69-97 148-176 (450)
186 CHL00176 ftsH cell division pr 97.0 0.00075 1.6E-08 58.5 3.9 48 46-93 183-240 (638)
187 PF03308 ArgK: ArgK protein; 97.0 0.0031 6.7E-08 49.0 6.8 40 56-95 16-55 (266)
188 PRK14530 adenylate kinase; Pro 97.0 0.00069 1.5E-08 50.7 3.2 24 71-94 5-28 (215)
189 cd01672 TMPK Thymidine monopho 97.0 0.0025 5.3E-08 46.2 6.1 25 71-95 2-26 (200)
190 PRK08939 primosomal protein Dn 97.0 0.0042 9.2E-08 49.3 7.8 36 69-104 156-191 (306)
191 PRK13531 regulatory ATPase Rav 97.0 0.00098 2.1E-08 56.0 4.3 45 46-94 20-64 (498)
192 PF07693 KAP_NTPase: KAP famil 97.0 0.0071 1.5E-07 47.5 9.1 76 54-129 4-83 (325)
193 TIGR03263 guanyl_kin guanylate 97.0 0.0006 1.3E-08 49.2 2.7 24 70-93 2-25 (180)
194 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0022 4.8E-08 50.1 6.0 52 70-123 70-121 (274)
195 PRK04182 cytidylate kinase; Pr 97.0 0.00078 1.7E-08 48.3 3.2 24 71-94 2-25 (180)
196 TIGR01313 therm_gnt_kin carboh 97.0 0.00053 1.2E-08 48.8 2.3 23 72-94 1-23 (163)
197 PRK09435 membrane ATPase/prote 96.9 0.0024 5.2E-08 51.3 6.2 30 66-95 53-82 (332)
198 KOG0726 26S proteasome regulat 96.9 0.0055 1.2E-07 48.8 7.9 83 46-128 185-315 (440)
199 PRK08116 hypothetical protein; 96.9 0.0012 2.7E-08 51.3 4.4 34 71-104 116-149 (268)
200 PF01078 Mg_chelatase: Magnesi 96.9 0.0018 3.9E-08 48.6 5.0 42 46-91 3-44 (206)
201 PRK05703 flhF flagellar biosyn 96.9 0.0048 1E-07 51.1 8.0 26 69-94 221-246 (424)
202 PRK05439 pantothenate kinase; 96.9 0.002 4.3E-08 51.3 5.5 28 67-94 84-111 (311)
203 PRK09112 DNA polymerase III su 96.9 0.0022 4.8E-08 51.8 5.9 53 42-95 19-71 (351)
204 PRK09183 transposase/IS protei 96.9 0.0014 3E-08 50.7 4.5 34 70-103 103-136 (259)
205 PRK00300 gmk guanylate kinase; 96.9 0.0008 1.7E-08 49.6 3.0 24 70-93 6-29 (205)
206 PF03215 Rad17: Rad17 cell cyc 96.9 0.0013 2.7E-08 55.8 4.5 58 33-93 9-69 (519)
207 PRK10865 protein disaggregatio 96.9 0.0021 4.5E-08 57.5 6.1 50 46-95 568-624 (857)
208 PRK00771 signal recognition pa 96.9 0.0088 1.9E-07 49.7 9.4 29 68-96 94-122 (437)
209 PRK06835 DNA replication prote 96.9 0.0023 5E-08 51.3 5.8 35 70-104 184-218 (329)
210 PRK13975 thymidylate kinase; P 96.9 0.001 2.3E-08 48.6 3.5 26 70-95 3-28 (196)
211 PF00448 SRP54: SRP54-type pro 96.9 0.0018 4E-08 48.1 4.8 35 69-103 1-35 (196)
212 cd00071 GMPK Guanosine monopho 96.9 0.00077 1.7E-08 47.2 2.6 23 72-94 2-24 (137)
213 PRK13948 shikimate kinase; Pro 96.9 0.00094 2E-08 49.2 3.1 29 68-96 9-37 (182)
214 TIGR00554 panK_bact pantothena 96.9 0.0013 2.8E-08 51.9 4.1 28 67-94 60-87 (290)
215 TIGR01243 CDC48 AAA family ATP 96.9 0.0018 3.9E-08 56.9 5.3 51 46-96 453-514 (733)
216 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0014 2.9E-08 50.1 4.1 25 71-95 1-25 (249)
217 PRK10787 DNA-binding ATP-depen 96.9 0.0021 4.5E-08 57.0 5.7 51 47-97 323-377 (784)
218 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0025 5.5E-08 44.6 5.0 25 69-93 22-46 (133)
219 TIGR01425 SRP54_euk signal rec 96.9 0.0097 2.1E-07 49.4 9.2 28 68-95 99-126 (429)
220 cd01131 PilT Pilus retraction 96.9 0.0019 4.1E-08 47.9 4.6 27 70-96 2-28 (198)
221 TIGR00382 clpX endopeptidase C 96.9 0.0021 4.6E-08 53.0 5.3 50 46-95 77-142 (413)
222 COG0470 HolB ATPase involved i 96.8 0.0082 1.8E-07 46.9 8.4 49 47-95 2-50 (325)
223 PRK05057 aroK shikimate kinase 96.8 0.001 2.2E-08 48.3 3.0 26 70-95 5-30 (172)
224 PRK03731 aroL shikimate kinase 96.8 0.0011 2.3E-08 47.5 3.2 25 71-95 4-28 (171)
225 COG3899 Predicted ATPase [Gene 96.8 0.0065 1.4E-07 54.4 8.6 82 48-130 2-87 (849)
226 COG1484 DnaC DNA replication p 96.8 0.0098 2.1E-07 46.0 8.6 37 68-104 104-140 (254)
227 TIGR02640 gas_vesic_GvpN gas v 96.8 0.0021 4.6E-08 49.6 4.9 25 71-95 23-47 (262)
228 PRK10078 ribose 1,5-bisphospho 96.8 0.00086 1.9E-08 49.0 2.6 23 71-93 4-26 (186)
229 PRK10751 molybdopterin-guanine 96.8 0.0014 2.9E-08 48.0 3.6 28 68-95 5-32 (173)
230 PRK07471 DNA polymerase III su 96.8 0.0033 7.2E-08 51.1 6.2 51 42-93 15-65 (365)
231 COG0563 Adk Adenylate kinase a 96.8 0.0011 2.4E-08 48.6 3.1 23 71-93 2-24 (178)
232 PF00625 Guanylate_kin: Guanyl 96.8 0.0016 3.4E-08 47.4 3.9 32 69-100 2-33 (183)
233 PRK14738 gmk guanylate kinase; 96.8 0.0013 2.8E-08 49.0 3.5 28 65-92 9-36 (206)
234 cd01124 KaiC KaiC is a circadi 96.8 0.0019 4.2E-08 46.5 4.3 33 72-104 2-34 (187)
235 PRK14088 dnaA chromosomal repl 96.8 0.0063 1.4E-07 50.6 7.8 36 69-104 130-167 (440)
236 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0013 2.8E-08 46.8 3.3 24 71-94 2-25 (171)
237 PLN02318 phosphoribulokinase/u 96.8 0.002 4.2E-08 55.5 4.8 34 60-93 56-89 (656)
238 PRK14971 DNA polymerase III su 96.8 0.0027 6E-08 54.8 5.7 57 34-94 8-64 (614)
239 PF13245 AAA_19: Part of AAA d 96.8 0.0062 1.4E-07 38.4 5.9 25 69-93 10-35 (76)
240 COG2607 Predicted ATPase (AAA+ 96.8 0.0063 1.4E-07 47.0 6.9 54 46-99 60-115 (287)
241 PF02374 ArsA_ATPase: Anion-tr 96.8 0.0032 6.9E-08 49.9 5.6 24 70-93 2-25 (305)
242 COG0003 ArsA Predicted ATPase 96.8 0.0028 6.1E-08 50.7 5.3 48 69-120 2-49 (322)
243 TIGR02639 ClpA ATP-dependent C 96.8 0.0027 6E-08 55.8 5.7 49 46-94 454-509 (731)
244 PRK10463 hydrogenase nickel in 96.8 0.0049 1.1E-07 48.6 6.5 35 67-101 102-136 (290)
245 PF04665 Pox_A32: Poxvirus A32 96.8 0.0021 4.5E-08 49.4 4.3 37 69-105 13-49 (241)
246 COG1428 Deoxynucleoside kinase 96.8 0.0014 2.9E-08 49.4 3.2 26 69-94 4-29 (216)
247 PRK14527 adenylate kinase; Pro 96.8 0.0015 3.4E-08 47.8 3.5 26 68-93 5-30 (191)
248 PF08477 Miro: Miro-like prote 96.8 0.0015 3.2E-08 43.6 3.1 21 72-92 2-22 (119)
249 TIGR00362 DnaA chromosomal rep 96.8 0.0054 1.2E-07 50.2 6.9 36 69-104 136-173 (405)
250 TIGR00041 DTMP_kinase thymidyl 96.8 0.0055 1.2E-07 44.7 6.4 26 70-95 4-29 (195)
251 PF13521 AAA_28: AAA domain; P 96.7 0.0013 2.9E-08 46.8 3.0 21 72-92 2-22 (163)
252 PRK14493 putative bifunctional 96.7 0.0024 5.2E-08 49.9 4.6 34 70-104 2-35 (274)
253 PF06068 TIP49: TIP49 C-termin 96.7 0.0052 1.1E-07 50.1 6.6 54 46-99 24-80 (398)
254 COG0703 AroK Shikimate kinase 96.7 0.0014 3.1E-08 47.8 3.1 60 71-130 4-72 (172)
255 CHL00095 clpC Clp protease ATP 96.7 0.0058 1.2E-07 54.5 7.5 49 46-94 509-564 (821)
256 COG1224 TIP49 DNA helicase TIP 96.7 0.0043 9.4E-08 50.4 6.0 52 45-96 38-92 (450)
257 COG0542 clpA ATP-binding subun 96.7 0.0069 1.5E-07 53.5 7.6 71 46-117 491-568 (786)
258 PF03029 ATP_bind_1: Conserved 96.7 0.0019 4.2E-08 49.4 3.8 23 74-96 1-23 (238)
259 PRK11034 clpA ATP-dependent Cl 96.7 0.0032 6.8E-08 55.7 5.6 49 46-94 458-513 (758)
260 CHL00081 chlI Mg-protoporyphyr 96.7 0.0022 4.7E-08 51.9 4.2 46 46-93 17-62 (350)
261 PLN02200 adenylate kinase fami 96.7 0.0019 4E-08 49.3 3.6 26 68-93 42-67 (234)
262 PRK05537 bifunctional sulfate 96.7 0.0037 8.1E-08 53.6 5.8 49 47-95 370-418 (568)
263 PRK12339 2-phosphoglycerate ki 96.7 0.0019 4.2E-08 48.0 3.6 25 69-93 3-27 (197)
264 TIGR00073 hypB hydrogenase acc 96.7 0.0034 7.5E-08 46.6 4.9 30 65-94 18-47 (207)
265 PRK13768 GTPase; Provisional 96.7 0.0031 6.7E-08 48.6 4.8 25 70-94 3-27 (253)
266 PRK13407 bchI magnesium chelat 96.7 0.0025 5.5E-08 51.2 4.4 46 45-93 7-53 (334)
267 cd01428 ADK Adenylate kinase ( 96.7 0.0016 3.5E-08 47.3 3.1 22 72-93 2-23 (194)
268 COG1124 DppF ABC-type dipeptid 96.7 0.0019 4.1E-08 49.6 3.5 23 70-92 34-56 (252)
269 COG1936 Predicted nucleotide k 96.7 0.0014 3.1E-08 47.9 2.7 20 71-90 2-21 (180)
270 COG1102 Cmk Cytidylate kinase 96.7 0.0017 3.6E-08 47.2 2.9 25 71-95 2-26 (179)
271 PRK12726 flagellar biosynthesi 96.7 0.015 3.3E-07 47.7 8.8 27 68-94 205-231 (407)
272 PRK15453 phosphoribulokinase; 96.7 0.0035 7.5E-08 49.3 4.9 27 68-94 4-30 (290)
273 PRK14532 adenylate kinase; Pro 96.6 0.0016 3.5E-08 47.4 2.9 22 72-93 3-24 (188)
274 PLN02348 phosphoribulokinase 96.6 0.0024 5.2E-08 52.3 4.1 30 66-95 46-75 (395)
275 KOG0730 AAA+-type ATPase [Post 96.6 0.0046 9.9E-08 53.4 5.9 52 46-97 434-496 (693)
276 PF13604 AAA_30: AAA domain; P 96.6 0.0074 1.6E-07 44.7 6.4 35 70-104 19-53 (196)
277 cd02027 APSK Adenosine 5'-phos 96.6 0.0018 3.8E-08 45.9 2.9 24 71-94 1-24 (149)
278 TIGR00750 lao LAO/AO transport 96.6 0.0058 1.3E-07 48.1 6.1 30 65-94 30-59 (300)
279 PRK09087 hypothetical protein; 96.6 0.0016 3.6E-08 49.4 2.9 25 69-93 44-68 (226)
280 COG1703 ArgK Putative periplas 96.6 0.0053 1.1E-07 48.6 5.7 40 56-95 38-77 (323)
281 PF05621 TniB: Bacterial TniB 96.6 0.02 4.3E-07 45.4 8.9 80 46-129 34-123 (302)
282 PRK12422 chromosomal replicati 96.6 0.0062 1.3E-07 50.7 6.4 36 69-104 141-176 (445)
283 TIGR00176 mobB molybdopterin-g 96.6 0.0031 6.8E-08 45.1 4.1 26 71-96 1-26 (155)
284 cd03115 SRP The signal recogni 96.6 0.0039 8.4E-08 44.8 4.7 25 71-95 2-26 (173)
285 TIGR03499 FlhF flagellar biosy 96.6 0.0035 7.7E-08 49.0 4.7 27 69-95 194-220 (282)
286 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.0065 1.4E-07 45.6 6.0 37 68-104 19-55 (229)
287 PHA02530 pseT polynucleotide k 96.6 0.0021 4.6E-08 50.1 3.5 24 70-93 3-26 (300)
288 PF03266 NTPase_1: NTPase; In 96.6 0.0022 4.8E-08 46.6 3.3 23 72-94 2-24 (168)
289 PRK10867 signal recognition pa 96.6 0.019 4.2E-07 47.7 9.1 28 69-96 100-127 (433)
290 PRK12724 flagellar biosynthesi 96.6 0.012 2.6E-07 48.8 7.8 25 69-93 223-247 (432)
291 PRK06067 flagellar accessory p 96.6 0.0096 2.1E-07 44.9 6.8 47 58-104 14-60 (234)
292 COG0237 CoaE Dephospho-CoA kin 96.6 0.0022 4.7E-08 48.0 3.2 23 69-91 2-24 (201)
293 PRK08356 hypothetical protein; 96.6 0.0021 4.5E-08 47.4 3.1 21 70-90 6-26 (195)
294 cd03116 MobB Molybdenum is an 96.6 0.0047 1E-07 44.5 4.8 27 70-96 2-28 (159)
295 PRK14531 adenylate kinase; Pro 96.6 0.0025 5.5E-08 46.5 3.5 23 71-93 4-26 (183)
296 PRK04301 radA DNA repair and r 96.6 0.01 2.2E-07 47.1 7.1 25 68-92 101-125 (317)
297 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.0043 9.3E-08 39.2 4.1 25 71-95 1-25 (99)
298 TIGR01287 nifH nitrogenase iro 96.6 0.0035 7.6E-08 48.4 4.3 24 70-93 1-24 (275)
299 PHA02244 ATPase-like protein 96.5 0.0028 6.1E-08 51.6 3.9 27 71-97 121-147 (383)
300 PF00005 ABC_tran: ABC transpo 96.5 0.0019 4.2E-08 44.3 2.6 24 70-93 12-35 (137)
301 TIGR01650 PD_CobS cobaltochela 96.5 0.0066 1.4E-07 48.6 5.9 45 48-96 47-91 (327)
302 PRK06761 hypothetical protein; 96.5 0.0035 7.7E-08 49.2 4.3 27 70-96 4-30 (282)
303 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0064 1.4E-07 54.4 6.4 50 46-95 565-621 (852)
304 COG0542 clpA ATP-binding subun 96.5 0.0087 1.9E-07 52.9 7.0 83 46-131 170-263 (786)
305 cd02022 DPCK Dephospho-coenzym 96.5 0.0019 4.2E-08 46.9 2.7 21 71-91 1-21 (179)
306 PRK00698 tmk thymidylate kinas 96.5 0.0095 2E-07 43.6 6.3 25 70-94 4-28 (205)
307 PRK09825 idnK D-gluconate kina 96.5 0.0026 5.6E-08 46.4 3.3 25 70-94 4-28 (176)
308 PRK14737 gmk guanylate kinase; 96.5 0.0022 4.8E-08 47.2 2.9 25 69-93 4-28 (186)
309 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0073 1.6E-07 48.8 6.0 51 46-96 61-115 (358)
310 PF00406 ADK: Adenylate kinase 96.5 0.0023 5E-08 45.1 2.9 20 74-93 1-20 (151)
311 COG0194 Gmk Guanylate kinase [ 96.5 0.0041 8.8E-08 46.0 4.1 24 70-93 5-28 (191)
312 PRK01184 hypothetical protein; 96.5 0.0023 4.9E-08 46.5 2.9 19 70-88 2-20 (184)
313 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.0077 1.7E-07 45.7 5.9 34 58-91 10-43 (237)
314 COG1763 MobB Molybdopterin-gua 96.5 0.0045 9.8E-08 44.8 4.3 29 69-97 2-30 (161)
315 PRK13695 putative NTPase; Prov 96.5 0.0043 9.4E-08 44.7 4.3 24 71-94 2-25 (174)
316 KOG1532 GTPase XAB1, interacts 96.5 0.0034 7.5E-08 49.3 3.9 32 68-99 18-49 (366)
317 TIGR02030 BchI-ChlI magnesium 96.5 0.0053 1.1E-07 49.4 5.1 45 46-93 4-49 (337)
318 COG0714 MoxR-like ATPases [Gen 96.5 0.005 1.1E-07 49.0 4.9 52 46-101 24-75 (329)
319 cd04139 RalA_RalB RalA/RalB su 96.5 0.0024 5.2E-08 44.5 2.8 21 71-91 2-22 (164)
320 PRK10536 hypothetical protein; 96.5 0.0099 2.1E-07 46.2 6.4 53 46-102 55-109 (262)
321 cd03114 ArgK-like The function 96.5 0.0043 9.3E-08 44.0 4.1 23 71-93 1-23 (148)
322 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.0052 1.1E-07 47.5 4.8 24 69-92 36-59 (259)
323 COG1100 GTPase SAR1 and relate 96.5 0.0021 4.6E-08 47.5 2.6 23 70-92 6-28 (219)
324 PF02562 PhoH: PhoH-like prote 96.5 0.0061 1.3E-07 45.8 5.0 39 69-107 19-59 (205)
325 PTZ00088 adenylate kinase 1; P 96.5 0.0027 5.7E-08 48.4 3.1 22 72-93 9-30 (229)
326 TIGR02236 recomb_radA DNA repa 96.5 0.014 3.1E-07 46.0 7.4 37 68-104 94-136 (310)
327 PRK14490 putative bifunctional 96.5 0.005 1.1E-07 49.9 4.8 29 68-96 4-32 (369)
328 PLN02796 D-glycerate 3-kinase 96.5 0.0034 7.4E-08 50.6 3.8 28 68-95 99-126 (347)
329 TIGR01817 nifA Nif-specific re 96.5 0.011 2.4E-07 50.1 7.1 49 45-93 195-243 (534)
330 KOG0733 Nuclear AAA ATPase (VC 96.4 0.0021 4.5E-08 55.3 2.7 26 69-94 545-570 (802)
331 TIGR02012 tigrfam_recA protein 96.4 0.0087 1.9E-07 47.9 6.0 36 68-103 54-89 (321)
332 PRK02496 adk adenylate kinase; 96.4 0.0031 6.7E-08 45.8 3.2 23 71-93 3-25 (184)
333 TIGR01351 adk adenylate kinase 96.4 0.0029 6.3E-08 47.1 3.0 22 72-93 2-23 (210)
334 cd00983 recA RecA is a bacter 96.4 0.0088 1.9E-07 47.9 5.9 37 68-104 54-90 (325)
335 TIGR00101 ureG urease accessor 96.4 0.0079 1.7E-07 44.7 5.4 27 70-96 2-28 (199)
336 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0028 6.2E-08 47.1 3.0 24 70-93 31-54 (218)
337 PF14532 Sigma54_activ_2: Sigm 96.4 0.0016 3.6E-08 45.3 1.6 44 50-93 2-45 (138)
338 PF08433 KTI12: Chromatin asso 96.4 0.0053 1.1E-07 47.9 4.5 27 70-96 2-28 (270)
339 cd01130 VirB11-like_ATPase Typ 96.4 0.0053 1.2E-07 44.9 4.3 25 69-93 25-49 (186)
340 PRK00279 adk adenylate kinase; 96.4 0.0032 7E-08 47.0 3.1 23 71-93 2-24 (215)
341 cd02117 NifH_like This family 96.4 0.0035 7.5E-08 46.7 3.3 24 70-93 1-24 (212)
342 cd03225 ABC_cobalt_CbiO_domain 96.4 0.0031 6.7E-08 46.7 3.0 24 70-93 28-51 (211)
343 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0081 1.8E-07 53.8 6.0 49 46-94 566-621 (852)
344 CHL00195 ycf46 Ycf46; Provisio 96.4 0.0064 1.4E-07 51.2 5.1 49 46-94 228-284 (489)
345 PF00437 T2SE: Type II/IV secr 96.4 0.0088 1.9E-07 46.1 5.5 42 55-96 113-154 (270)
346 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0036 7.9E-08 42.3 2.9 21 70-90 16-36 (107)
347 PRK13230 nitrogenase reductase 96.4 0.006 1.3E-07 47.3 4.6 25 70-94 2-26 (279)
348 TIGR00960 3a0501s02 Type II (G 96.3 0.0033 7.1E-08 46.8 2.9 24 70-93 30-53 (216)
349 TIGR00017 cmk cytidylate kinas 96.3 0.004 8.6E-08 47.0 3.4 25 70-94 3-27 (217)
350 PRK08099 bifunctional DNA-bind 96.3 0.0033 7.2E-08 51.6 3.1 26 68-93 218-243 (399)
351 smart00072 GuKc Guanylate kina 96.3 0.004 8.8E-08 45.4 3.2 24 70-93 3-26 (184)
352 PRK14087 dnaA chromosomal repl 96.3 0.015 3.2E-07 48.5 7.0 27 69-95 141-167 (450)
353 PF01926 MMR_HSR1: 50S ribosom 96.3 0.0033 7.1E-08 42.1 2.5 20 72-91 2-21 (116)
354 TIGR01166 cbiO cobalt transpor 96.3 0.0036 7.8E-08 45.7 2.9 23 70-92 19-41 (190)
355 cd02034 CooC The accessory pro 96.3 0.0079 1.7E-07 41.0 4.4 24 72-95 2-25 (116)
356 cd04155 Arl3 Arl3 subfamily. 96.3 0.0031 6.6E-08 44.7 2.5 24 69-92 14-37 (173)
357 TIGR00455 apsK adenylylsulfate 96.3 0.0083 1.8E-07 43.6 4.8 26 69-94 18-43 (184)
358 COG1116 TauB ABC-type nitrate/ 96.3 0.0036 7.9E-08 48.1 3.0 22 70-91 30-51 (248)
359 smart00173 RAS Ras subfamily o 96.3 0.0038 8.3E-08 43.8 2.9 21 71-91 2-22 (164)
360 PRK07429 phosphoribulokinase; 96.3 0.0079 1.7E-07 48.2 5.0 29 67-95 6-34 (327)
361 cd02029 PRK_like Phosphoribulo 96.3 0.0059 1.3E-07 47.7 4.1 24 71-94 1-24 (277)
362 PRK11608 pspF phage shock prot 96.3 0.0049 1.1E-07 49.2 3.8 47 46-92 6-52 (326)
363 PRK13236 nitrogenase reductase 96.3 0.0055 1.2E-07 48.2 4.0 29 66-94 3-31 (296)
364 PRK08154 anaerobic benzoate ca 96.3 0.0038 8.1E-08 49.5 3.1 28 68-95 132-159 (309)
365 cd02040 NifH NifH gene encodes 96.3 0.0079 1.7E-07 46.0 4.8 25 70-94 2-26 (270)
366 PF06745 KaiC: KaiC; InterPro 96.3 0.012 2.6E-07 44.1 5.7 36 69-104 19-55 (226)
367 cd03229 ABC_Class3 This class 96.3 0.0041 8.8E-08 45.1 3.0 23 70-92 27-49 (178)
368 cd03269 ABC_putative_ATPase Th 96.3 0.004 8.7E-08 46.1 3.0 23 70-92 27-49 (210)
369 KOG3347 Predicted nucleotide k 96.3 0.004 8.6E-08 44.8 2.8 25 69-93 7-31 (176)
370 cd03261 ABC_Org_Solvent_Resist 96.3 0.0039 8.4E-08 47.0 3.0 24 70-93 27-50 (235)
371 KOG0743 AAA+-type ATPase [Post 96.3 0.0062 1.4E-07 50.5 4.3 43 71-117 237-279 (457)
372 TIGR02673 FtsE cell division A 96.3 0.004 8.6E-08 46.2 3.0 24 70-93 29-52 (214)
373 PRK14528 adenylate kinase; Pro 96.3 0.0048 1E-07 45.2 3.4 24 70-93 2-25 (186)
374 cd03256 ABC_PhnC_transporter A 96.2 0.0039 8.4E-08 47.0 3.0 23 70-92 28-50 (241)
375 KOG0651 26S proteasome regulat 96.2 0.004 8.7E-08 49.7 3.1 29 69-97 166-194 (388)
376 cd00876 Ras Ras family. The R 96.2 0.0039 8.5E-08 43.2 2.8 20 72-91 2-21 (160)
377 cd04163 Era Era subfamily. Er 96.2 0.0046 1E-07 42.7 3.1 23 69-91 3-25 (168)
378 COG0378 HypB Ni2+-binding GTPa 96.2 0.007 1.5E-07 45.1 4.2 35 69-103 13-47 (202)
379 TIGR02315 ABC_phnC phosphonate 96.2 0.004 8.6E-08 47.1 3.0 23 70-92 29-51 (243)
380 cd01862 Rab7 Rab7 subfamily. 96.2 0.0036 7.8E-08 44.1 2.6 22 71-92 2-23 (172)
381 cd03263 ABC_subfamily_A The AB 96.2 0.0041 8.9E-08 46.3 3.0 23 70-92 29-51 (220)
382 cd04159 Arl10_like Arl10-like 96.2 0.0033 7.2E-08 43.2 2.3 21 72-92 2-22 (159)
383 cd03292 ABC_FtsE_transporter F 96.2 0.0042 9.1E-08 46.0 3.0 23 70-92 28-50 (214)
384 cd02026 PRK Phosphoribulokinas 96.2 0.0036 7.7E-08 48.9 2.7 24 71-94 1-24 (273)
385 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0042 9E-08 46.4 3.0 23 70-92 31-53 (220)
386 cd04119 RJL RJL (RabJ-Like) su 96.2 0.0042 9.1E-08 43.4 2.8 21 72-92 3-23 (168)
387 cd00154 Rab Rab family. Rab G 96.2 0.0044 9.4E-08 42.5 2.8 21 72-92 3-23 (159)
388 PRK04328 hypothetical protein; 96.2 0.013 2.8E-07 45.0 5.6 37 68-104 22-58 (249)
389 cd03260 ABC_PstB_phosphate_tra 96.2 0.0043 9.4E-08 46.5 3.0 24 70-93 27-50 (227)
390 PRK09354 recA recombinase A; P 96.2 0.022 4.7E-07 46.1 7.1 48 57-104 47-95 (349)
391 PRK08533 flagellar accessory p 96.2 0.0081 1.8E-07 45.6 4.5 23 69-91 24-46 (230)
392 PF07724 AAA_2: AAA domain (Cd 96.2 0.013 2.8E-07 42.6 5.4 42 69-111 3-45 (171)
393 PRK12338 hypothetical protein; 96.2 0.0051 1.1E-07 49.1 3.5 25 69-93 4-28 (319)
394 KOG0727 26S proteasome regulat 96.2 0.01 2.2E-07 46.5 4.9 46 47-92 156-212 (408)
395 TIGR03600 phage_DnaB phage rep 96.2 0.046 1E-06 45.0 9.1 51 70-126 195-246 (421)
396 COG4088 Predicted nucleotide k 96.2 0.0048 1E-07 46.7 3.0 26 70-95 2-27 (261)
397 cd03259 ABC_Carb_Solutes_like 96.2 0.0046 9.9E-08 45.9 3.0 23 70-92 27-49 (213)
398 cd03235 ABC_Metallic_Cations A 96.2 0.0041 8.9E-08 46.1 2.7 24 70-93 26-49 (213)
399 TIGR03608 L_ocin_972_ABC putat 96.2 0.0047 1E-07 45.5 3.0 24 70-93 25-48 (206)
400 COG0464 SpoVK ATPases of the A 96.2 0.0043 9.4E-08 52.0 3.1 53 46-98 242-305 (494)
401 COG3640 CooC CO dehydrogenase 96.2 0.011 2.3E-07 45.4 4.9 23 71-93 2-24 (255)
402 KOG0739 AAA+-type ATPase [Post 96.2 0.023 4.9E-07 45.5 6.8 83 46-131 133-226 (439)
403 PRK14722 flhF flagellar biosyn 96.2 0.0076 1.7E-07 49.2 4.4 28 69-96 137-164 (374)
404 PRK13232 nifH nitrogenase redu 96.2 0.0044 9.6E-08 47.9 2.9 24 70-93 2-25 (273)
405 TIGR00231 small_GTP small GTP- 96.2 0.0047 1E-07 42.0 2.7 22 71-92 3-24 (161)
406 PRK13541 cytochrome c biogenes 96.2 0.0049 1.1E-07 45.2 3.0 23 70-92 27-49 (195)
407 cd03296 ABC_CysA_sulfate_impor 96.1 0.0047 1E-07 46.7 3.0 23 70-92 29-51 (239)
408 cd03297 ABC_ModC_molybdenum_tr 96.1 0.0054 1.2E-07 45.6 3.2 26 67-93 22-47 (214)
409 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.0049 1.1E-07 46.5 3.0 23 70-92 28-50 (236)
410 TIGR02211 LolD_lipo_ex lipopro 96.1 0.005 1.1E-07 45.9 3.0 23 70-92 32-54 (221)
411 cd03226 ABC_cobalt_CbiO_domain 96.1 0.0049 1.1E-07 45.5 2.9 24 70-93 27-50 (205)
412 PRK10584 putative ABC transpor 96.1 0.005 1.1E-07 46.2 3.0 23 70-92 37-59 (228)
413 cd03264 ABC_drug_resistance_li 96.1 0.0044 9.5E-08 45.9 2.7 22 71-92 27-48 (211)
414 cd03257 ABC_NikE_OppD_transpor 96.1 0.0048 1E-07 46.1 2.9 23 70-92 32-54 (228)
415 cd03224 ABC_TM1139_LivF_branch 96.1 0.0048 1E-07 46.0 2.9 23 70-92 27-49 (222)
416 PRK13233 nifH nitrogenase redu 96.1 0.0098 2.1E-07 45.9 4.7 25 70-94 3-27 (275)
417 cd03265 ABC_DrrA DrrA is the A 96.1 0.0051 1.1E-07 45.9 3.0 23 70-92 27-49 (220)
418 cd04138 H_N_K_Ras_like H-Ras/N 96.1 0.0052 1.1E-07 42.6 2.9 21 71-91 3-23 (162)
419 PRK10247 putative ABC transpor 96.1 0.0052 1.1E-07 46.2 3.0 23 70-92 34-56 (225)
420 smart00175 RAB Rab subfamily o 96.1 0.0047 1E-07 43.1 2.6 20 72-91 3-22 (164)
421 PRK14730 coaE dephospho-CoA ki 96.1 0.0059 1.3E-07 45.2 3.3 23 70-92 2-24 (195)
422 cd03301 ABC_MalK_N The N-termi 96.1 0.0053 1.2E-07 45.5 3.0 23 70-92 27-49 (213)
423 COG1126 GlnQ ABC-type polar am 96.1 0.0051 1.1E-07 46.7 2.8 35 69-104 28-62 (240)
424 COG2909 MalT ATP-dependent tra 96.1 0.058 1.2E-06 48.1 9.6 75 44-128 17-92 (894)
425 PRK11629 lolD lipoprotein tran 96.1 0.0053 1.1E-07 46.3 3.0 23 70-92 36-58 (233)
426 KOG0734 AAA+-type ATPase conta 96.1 0.0059 1.3E-07 52.0 3.5 46 46-91 304-359 (752)
427 COG0529 CysC Adenylylsulfate k 96.1 0.013 2.9E-07 43.2 4.9 32 69-100 23-54 (197)
428 cd03258 ABC_MetN_methionine_tr 96.1 0.0053 1.1E-07 46.2 3.0 24 70-93 32-55 (233)
429 cd00984 DnaB_C DnaB helicase C 96.1 0.02 4.4E-07 43.1 6.2 35 70-104 14-49 (242)
430 cd01121 Sms Sms (bacterial rad 96.1 0.015 3.2E-07 47.4 5.7 48 57-104 70-117 (372)
431 PRK13973 thymidylate kinase; P 96.1 0.022 4.9E-07 42.5 6.3 27 70-96 4-30 (213)
432 cd01876 YihA_EngB The YihA (En 96.1 0.005 1.1E-07 42.7 2.7 19 72-90 2-20 (170)
433 TIGR01420 pilT_fam pilus retra 96.1 0.0097 2.1E-07 47.8 4.6 34 69-102 122-155 (343)
434 TIGR01618 phage_P_loop phage n 96.1 0.0042 9.1E-08 47.1 2.3 23 69-91 12-34 (220)
435 PRK11124 artP arginine transpo 96.1 0.0055 1.2E-07 46.4 3.0 23 70-92 29-51 (242)
436 KOG2227 Pre-initiation complex 96.1 0.13 2.7E-06 43.3 11.0 60 45-104 149-212 (529)
437 PLN02165 adenylate isopentenyl 96.1 0.0059 1.3E-07 49.0 3.2 26 69-94 43-68 (334)
438 TIGR01281 DPOR_bchL light-inde 96.0 0.0067 1.5E-07 46.6 3.4 23 71-93 2-24 (268)
439 TIGR02782 TrbB_P P-type conjug 96.0 0.01 2.2E-07 46.9 4.5 25 70-94 133-157 (299)
440 PRK12727 flagellar biosynthesi 96.0 0.021 4.5E-07 48.7 6.5 26 69-94 350-375 (559)
441 PF09848 DUF2075: Uncharacteri 96.0 0.019 4.1E-07 46.2 6.1 35 70-104 2-38 (352)
442 cd01673 dNK Deoxyribonucleosid 96.0 0.0055 1.2E-07 44.7 2.8 23 71-93 1-23 (193)
443 PRK11248 tauB taurine transpor 96.0 0.0057 1.2E-07 47.0 3.0 24 70-93 28-51 (255)
444 cd03222 ABC_RNaseL_inhibitor T 96.0 0.0058 1.3E-07 44.7 2.9 24 70-93 26-49 (177)
445 cd03237 ABC_RNaseL_inhibitor_d 96.0 0.0057 1.2E-07 46.9 3.0 24 70-93 26-49 (246)
446 TIGR02974 phageshock_pspF psp 96.0 0.013 2.7E-07 47.0 5.0 46 48-93 1-46 (329)
447 cd01878 HflX HflX subfamily. 96.0 0.01 2.2E-07 43.5 4.2 27 66-92 38-64 (204)
448 COG1120 FepC ABC-type cobalami 96.0 0.0053 1.1E-07 47.6 2.8 23 70-92 29-51 (258)
449 PRK15177 Vi polysaccharide exp 96.0 0.0059 1.3E-07 45.6 3.0 23 70-92 14-36 (213)
450 PLN03046 D-glycerate 3-kinase; 96.0 0.014 2.9E-07 48.6 5.2 27 68-94 211-237 (460)
451 cd04113 Rab4 Rab4 subfamily. 96.0 0.0059 1.3E-07 42.7 2.8 20 72-91 3-22 (161)
452 cd03218 ABC_YhbG The ABC trans 96.0 0.0059 1.3E-07 45.8 3.0 23 70-92 27-49 (232)
453 PRK13538 cytochrome c biogenes 96.0 0.006 1.3E-07 45.1 3.0 23 70-92 28-50 (204)
454 PRK14526 adenylate kinase; Pro 96.0 0.0064 1.4E-07 45.7 3.1 22 72-93 3-24 (211)
455 cd04123 Rab21 Rab21 subfamily. 96.0 0.006 1.3E-07 42.3 2.8 20 72-91 3-22 (162)
456 TIGR02770 nickel_nikD nickel i 96.0 0.0058 1.2E-07 46.0 2.9 25 70-94 13-37 (230)
457 cd01129 PulE-GspE PulE/GspE Th 96.0 0.022 4.7E-07 44.2 6.2 38 54-94 68-105 (264)
458 TIGR01978 sufC FeS assembly AT 96.0 0.0058 1.3E-07 46.1 2.9 23 70-92 27-49 (243)
459 cd02032 Bchl_like This family 96.0 0.012 2.5E-07 45.3 4.6 24 71-94 2-25 (267)
460 TIGR01184 ntrCD nitrate transp 96.0 0.0061 1.3E-07 46.0 3.0 24 70-93 12-35 (230)
461 PRK00023 cmk cytidylate kinase 96.0 0.0085 1.8E-07 45.4 3.8 26 70-95 5-30 (225)
462 PRK05973 replicative DNA helic 96.0 0.012 2.6E-07 45.2 4.5 24 69-92 64-87 (237)
463 KOG0731 AAA+-type ATPase conta 96.0 0.0075 1.6E-07 53.1 3.8 48 46-93 311-368 (774)
464 cd03219 ABC_Mj1267_LivG_branch 96.0 0.0056 1.2E-07 46.1 2.7 23 70-92 27-49 (236)
465 cd03262 ABC_HisP_GlnQ_permease 96.0 0.0063 1.4E-07 45.0 3.0 24 70-93 27-50 (213)
466 cd01122 GP4d_helicase GP4d_hel 96.0 0.025 5.5E-07 43.4 6.4 35 70-104 31-66 (271)
467 PF10662 PduV-EutP: Ethanolami 96.0 0.0061 1.3E-07 43.3 2.7 22 70-91 2-23 (143)
468 KOG0736 Peroxisome assembly fa 96.0 0.026 5.6E-07 49.9 6.9 62 31-92 655-728 (953)
469 PF13479 AAA_24: AAA domain 96.0 0.0042 9.1E-08 46.5 1.9 20 70-89 4-23 (213)
470 PRK13540 cytochrome c biogenes 96.0 0.0067 1.4E-07 44.7 3.0 24 70-93 28-51 (200)
471 PRK14247 phosphate ABC transpo 96.0 0.0064 1.4E-07 46.3 3.0 24 70-93 30-53 (250)
472 cd03246 ABCC_Protease_Secretio 96.0 0.007 1.5E-07 43.6 3.0 24 70-93 29-52 (173)
473 cd03238 ABC_UvrA The excision 96.0 0.0065 1.4E-07 44.4 2.9 22 70-91 22-43 (176)
474 COG4608 AppF ABC-type oligopep 96.0 0.0079 1.7E-07 46.8 3.4 26 69-94 39-64 (268)
475 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.0067 1.4E-07 46.0 3.0 23 70-92 28-50 (242)
476 KOG0741 AAA+-type ATPase [Post 95.9 0.04 8.8E-07 47.0 7.7 53 67-119 536-588 (744)
477 TIGR02324 CP_lyasePhnL phospho 95.9 0.0068 1.5E-07 45.3 3.0 24 70-93 35-58 (224)
478 PF00071 Ras: Ras family; Int 95.9 0.0076 1.7E-07 42.1 3.1 21 72-92 2-22 (162)
479 PRK10908 cell division protein 95.9 0.0069 1.5E-07 45.3 3.0 23 70-92 29-51 (222)
480 cd00878 Arf_Arl Arf (ADP-ribos 95.9 0.006 1.3E-07 42.5 2.5 21 72-92 2-22 (158)
481 COG2812 DnaX DNA polymerase II 95.9 0.0069 1.5E-07 51.3 3.2 57 33-93 6-62 (515)
482 PRK15429 formate hydrogenlyase 95.9 0.028 6.1E-07 49.1 7.1 48 46-93 376-423 (686)
483 cd03232 ABC_PDR_domain2 The pl 95.9 0.0071 1.5E-07 44.4 2.9 23 70-92 34-56 (192)
484 TIGR00678 holB DNA polymerase 95.9 0.065 1.4E-06 39.0 8.1 26 69-94 14-39 (188)
485 PRK14250 phosphate ABC transpo 95.9 0.007 1.5E-07 45.9 3.0 24 70-93 30-53 (241)
486 cd03266 ABC_NatA_sodium_export 95.9 0.0071 1.5E-07 45.0 3.0 23 70-92 32-54 (218)
487 cd03252 ABCC_Hemolysin The ABC 95.9 0.007 1.5E-07 45.6 3.0 23 70-92 29-51 (237)
488 cd01864 Rab19 Rab19 subfamily. 95.9 0.0069 1.5E-07 42.7 2.8 22 70-91 4-25 (165)
489 cd03268 ABC_BcrA_bacitracin_re 95.9 0.0072 1.6E-07 44.7 3.0 23 70-92 27-49 (208)
490 KOG1969 DNA replication checkp 95.9 0.0076 1.6E-07 52.8 3.4 25 68-92 325-349 (877)
491 PRK14242 phosphate transporter 95.9 0.0071 1.5E-07 46.1 3.0 23 70-92 33-55 (253)
492 PRK11264 putative amino-acid A 95.9 0.0071 1.5E-07 46.0 3.0 23 70-92 30-52 (250)
493 PRK14489 putative bifunctional 95.9 0.013 2.7E-07 47.6 4.6 29 68-96 204-232 (366)
494 cd04136 Rap_like Rap-like subf 95.9 0.0073 1.6E-07 42.1 2.8 21 71-91 3-23 (163)
495 COG2019 AdkA Archaeal adenylat 95.9 0.0097 2.1E-07 43.5 3.4 25 69-93 4-28 (189)
496 PRK05022 anaerobic nitric oxid 95.9 0.018 3.9E-07 48.7 5.6 50 45-94 186-235 (509)
497 cd04177 RSR1 RSR1 subgroup. R 95.9 0.0073 1.6E-07 42.8 2.8 21 71-91 3-23 (168)
498 cd00879 Sar1 Sar1 subfamily. 95.9 0.0065 1.4E-07 43.9 2.6 23 69-91 19-41 (190)
499 cd01858 NGP_1 NGP-1. Autoanti 95.9 0.019 4.1E-07 40.6 5.0 43 49-91 81-124 (157)
500 TIGR01277 thiQ thiamine ABC tr 95.9 0.0074 1.6E-07 44.9 3.0 24 70-93 25-48 (213)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=4.7e-18 Score=153.17 Aligned_cols=125 Identities=34% Similarity=0.513 Sum_probs=102.6
Q ss_pred ccccCceeeeccccccchHHHHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHH
Q 032234 5 KKAAPSVVHDFKVRESPDSELVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTT 84 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTt 84 (144)
.++|+.+|+++ .++.+|+++|++||++|++++..+++.+..++||++.+++++..++.....++++++||||||+||||
T Consensus 144 ~~~~~~~g~~~-~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTT 222 (1153)
T PLN03210 144 TDVANILGYHS-QNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTT 222 (1153)
T ss_pred HHHhCcCceec-CCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHH
Confidence 46889999988 45789999999999999999998888788899999999999999987777789999999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEccc--ccc---cc------hhhHHHHHHHHHHHhhCCC
Q 032234 85 IADAVFNKISEHFEGSYFAHNV--RDA---EE------TDRIKDLQKQLLYELLNDR 130 (144)
Q Consensus 85 La~~v~~~~~~~f~~~~~v~~~--~~~---s~------~~~~~~l~~~ll~~l~~~~ 130 (144)
||+++|+++..+|+..+|+... +.. .. ......++++++..+....
T Consensus 223 LA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~ 279 (1153)
T PLN03210 223 IARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKK 279 (1153)
T ss_pred HHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCC
Confidence 9999999999999999888531 111 10 1123456777777776554
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.48 E-value=2e-13 Score=105.53 Aligned_cols=75 Identities=31% Similarity=0.495 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH--hhccCCcEEEEcccccccchhhHHHHHHHHHHHhhC
Q 032234 51 VERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK--ISEHFEGSYFAHNVRDAEETDRIKDLQKQLLYELLN 128 (144)
Q Consensus 51 r~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~--~~~~f~~~~~v~~~~~~s~~~~~~~l~~~ll~~l~~ 128 (144)
||.+++++.+.|...+.+.++|+|+||||+||||||..++++ +..+|+.++|+. ++.......++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 678899999988765678999999999999999999999997 788899999999 77666778888889888876
Q ss_pred C
Q 032234 129 D 129 (144)
Q Consensus 129 ~ 129 (144)
.
T Consensus 77 ~ 77 (287)
T PF00931_consen 77 P 77 (287)
T ss_dssp C
T ss_pred c
Confidence 6
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=2.2e-13 Score=120.02 Aligned_cols=76 Identities=32% Similarity=0.539 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH---hhccCCcEEEEcccccccchhhHHHHHHHHHHH
Q 032234 49 VGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK---ISEHFEGSYFAHNVRDAEETDRIKDLQKQLLYE 125 (144)
Q Consensus 49 vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~---~~~~f~~~~~v~~~~~~s~~~~~~~l~~~ll~~ 125 (144)
||.+..++++...|...+. .++|||||||+||||||+.++|+ +..+|+..+|+. ||+.+...+++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999988864433 99999999999999999999994 567899999999 99999999999999998
Q ss_pred hhCCC
Q 032234 126 LLNDR 130 (144)
Q Consensus 126 l~~~~ 130 (144)
+....
T Consensus 235 l~~~~ 239 (889)
T KOG4658|consen 235 LGLLD 239 (889)
T ss_pred hccCC
Confidence 87643
No 4
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.81 E-value=1.5e-08 Score=76.68 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=44.0
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhh---cCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCC
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLC---TGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFE 98 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~---~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 98 (144)
...+++|..+ .+++|++..+..+.-++. ...+....+-+||++|+||||||..+++....+|.
T Consensus 14 l~~~lRP~~L---~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 14 LAERLRPKSL---DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp HHHHTS-SSC---CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred hHHhcCCCCH---HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 4456677766 899999998888765553 23456788999999999999999999999887774
No 5
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.68 E-value=8.2e-08 Score=69.24 Aligned_cols=50 Identities=30% Similarity=0.426 Sum_probs=34.9
Q ss_pred CccchHHHHHHHHHHhh-cCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 47 DLVGVERHIKQTEPLLC-TGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.|+||+++++.+...+. ......+.+-|+|++|+|||+|...++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999884 234457899999999999999999999987665
No 6
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1e-07 Score=77.26 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=55.1
Q ss_pred HHHhhcccccCCCCCCccchHHHHH---HHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEccccc
Q 032234 32 EVLKRLEETFQSHNKDLVGVERHIK---QTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRD 108 (144)
Q Consensus 32 ~v~~~~~~~~~~~~~~~vGr~~~~~---~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~ 108 (144)
....+++|... .+++|++..+. .+.+++ +..++..+.+||++|+||||||+.+.......|....=+
T Consensus 13 PLA~rmRP~~l---de~vGQ~HLlg~~~~lrr~v--~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----- 82 (436)
T COG2256 13 PLAERLRPKSL---DEVVGQEHLLGEGKPLRRAV--EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----- 82 (436)
T ss_pred ChHHHhCCCCH---HHhcChHhhhCCCchHHHHH--hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----
Confidence 45567777666 67777775542 244455 456788899999999999999999999888777654333
Q ss_pred ccchhhHHHHHHHH
Q 032234 109 AEETDRIKDLQKQL 122 (144)
Q Consensus 109 ~s~~~~~~~l~~~l 122 (144)
.+.-.++..+.++-
T Consensus 83 ~~gvkdlr~i~e~a 96 (436)
T COG2256 83 TSGVKDLREIIEEA 96 (436)
T ss_pred cccHHHHHHHHHHH
Confidence 23334445555444
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.58 E-value=3.2e-07 Score=73.40 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=53.1
Q ss_pred CCCccchHHHHHHHHHHhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHhhccCC------cEEEEcccccccchhhHH
Q 032234 45 NKDLVGVERHIKQTEPLLCT--GSAGVYILGIWGIGGIGKTTIADAVFNKISEHFE------GSYFAHNVRDAEETDRIK 116 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~------~~~~v~~~~~~s~~~~~~ 116 (144)
+..++||+.+++.+..++.. .......+-|+|++|+|||++++.+++.+..... ..+|+.. ....+..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~~~~~~ 89 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QILDTLY 89 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CCCCCHH
Confidence 46799999999999888753 1233457889999999999999999997653322 2344542 2223344
Q ss_pred HHHHHHHHHh
Q 032234 117 DLQKQLLYEL 126 (144)
Q Consensus 117 ~l~~~ll~~l 126 (144)
.+...++.++
T Consensus 90 ~~~~~i~~~l 99 (365)
T TIGR02928 90 QVLVELANQL 99 (365)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 8
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.57 E-value=6.3e-07 Score=72.48 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCCCccchHHHHHHHHHHhhcC--CCCeEEEEEEccCCCchHHHHHHHHHHhhccC--CcEEEEcccccccchhhHHHHH
Q 032234 44 HNKDLVGVERHIKQTEPLLCTG--SAGVYILGIWGIGGIGKTTIADAVFNKISEHF--EGSYFAHNVRDAEETDRIKDLQ 119 (144)
Q Consensus 44 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f--~~~~~v~~~~~~s~~~~~~~l~ 119 (144)
.+..++||+.+++.+...+... ......+-|+|++|+|||++++.+++.+.... -..+++. .....+...+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHHH
Confidence 4467999999999998887432 23345677999999999999999999876543 2344443 12222344455
Q ss_pred HHHHHHhhC
Q 032234 120 KQLLYELLN 128 (144)
Q Consensus 120 ~~ll~~l~~ 128 (144)
..++.++..
T Consensus 104 ~~i~~~l~~ 112 (394)
T PRK00411 104 SEIARQLFG 112 (394)
T ss_pred HHHHHHhcC
Confidence 555555543
No 9
>PTZ00202 tuzin; Provisional
Probab=98.52 E-value=1.1e-06 Score=72.79 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=64.9
Q ss_pred HHHHHhhccc------ccCCCCCCccchHHHHHHHHHHhhcCC-CCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEE
Q 032234 30 ANEVLKRLEE------TFQSHNKDLVGVERHIKQTEPLLCTGS-AGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYF 102 (144)
Q Consensus 30 v~~v~~~~~~------~~~~~~~~~vGr~~~~~~l~~~l~~~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~ 102 (144)
++..++..++ ..|.+...|+||+.+...+...|...+ ...+++.|.|++|+|||||++.+..... ...+
T Consensus 240 v~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL 315 (550)
T PTZ00202 240 VSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAV 315 (550)
T ss_pred HHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEE
Confidence 4555555444 345567899999999999998886433 3356889999999999999999987654 2244
Q ss_pred EcccccccchhhHHHHHHHHHHHhhCC
Q 032234 103 AHNVRDAEETDRIKDLQKQLLYELLND 129 (144)
Q Consensus 103 v~~~~~~s~~~~~~~l~~~ll~~l~~~ 129 (144)
+.|. .+..+++..++..+.-.
T Consensus 316 ~vNp------rg~eElLr~LL~ALGV~ 336 (550)
T PTZ00202 316 FVDV------RGTEDTLRSVVKALGVP 336 (550)
T ss_pred EECC------CCHHHHHHHHHHHcCCC
Confidence 4322 25688888888888754
No 10
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.44 E-value=6e-07 Score=73.61 Aligned_cols=59 Identities=22% Similarity=0.395 Sum_probs=45.1
Q ss_pred HhhcccccCCCCCCccchHHHHHH---HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 34 LKRLEETFQSHNKDLVGVERHIKQ---TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.++++|..+ .+++|++..+.. +..++. ......+.++|++|+||||||+.+++.....|
T Consensus 3 a~~~RP~~l---~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~ 64 (413)
T PRK13342 3 AERMRPKTL---DEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPF 64 (413)
T ss_pred hhhhCCCCH---HHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 456666655 779999877665 777774 33456788899999999999999999776555
No 11
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.42 E-value=6.1e-07 Score=72.48 Aligned_cols=100 Identities=20% Similarity=0.309 Sum_probs=58.7
Q ss_pred HHhhcccccCCCCCCccchHHHHHH---HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQ---TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDA 109 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~ 109 (144)
.+++++|... .+.||.+..+.+ |.+++ +.+.++.+.+||++|+||||||+.+.+..+.+- ..||+...-.
T Consensus 128 LaermRPktL---~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~ 200 (554)
T KOG2028|consen 128 LAERMRPKTL---DDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATN 200 (554)
T ss_pred hhhhcCcchH---HHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccc
Confidence 4455555544 556666654432 33334 355688899999999999999999999765542 3344422223
Q ss_pred cchhhHHHHHHHHHH--HhhCCCC---cchHHHHH
Q 032234 110 EETDRIKDLQKQLLY--ELLNDRN---VRNVRFQL 139 (144)
Q Consensus 110 s~~~~~~~l~~~ll~--~l~~~~~---i~~~~~~l 139 (144)
+...++.++.++--. .+.+.+. |+.+..+-
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 445566666654432 3344443 55555443
No 12
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.34 E-value=7.4e-07 Score=72.63 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=39.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc-cCCcEEEEcccccccchhhHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE-HFEGSYFAHNVRDAEETDRIKDLQKQLL 123 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~v~~~~~~s~~~~~~~l~~~ll 123 (144)
-.+|+|++|+|||||++.+|+.+.. +|+..+|+..+.+. ...+.+++++++
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIl 222 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVK 222 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhc
Confidence 4568999999999999999997654 79999999944332 126777777775
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.32 E-value=1.2e-06 Score=69.64 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=44.9
Q ss_pred hhcccccCCCCCCccchHHHHHHHHHHhhc---CCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 35 KRLEETFQSHNKDLVGVERHIKQTEPLLCT---GSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 35 ~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+++|..+ .+++|++..++.+..++.. .......+-++|++|+||||||+.+++.+...
T Consensus 17 ~~~rP~~~---~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 17 RSLRPKSL---DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred hhcCcCCH---HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 34455444 7899999999988777642 23345678899999999999999999976543
No 14
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=6.4e-06 Score=56.02 Aligned_cols=53 Identities=26% Similarity=0.253 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 50 GVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 50 Gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
|++..+..+...+.. .....+.|+|++|+||||+++.+++.....-...+++.
T Consensus 2 ~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 2 GQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred chHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 667777777776642 24567889999999999999999998753333444444
No 15
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.24 E-value=2e-06 Score=66.33 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=39.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc-cCCcEEEEcccccccchhhHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE-HFEGSYFAHNVRDAEETDRIKDLQKQL 122 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~v~~~~~~s~~~~~~~l~~~l 122 (144)
..++|.|++|+|||||++.+|+.+.. +|+..+|+..+.+- ..++.++++.+
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I 68 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSV 68 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHh
Confidence 46789999999999999999997643 79999999833221 15666666666
No 16
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.23 E-value=1.1e-05 Score=70.70 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc------C
Q 032234 24 ELVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH------F 97 (144)
Q Consensus 24 ~~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f 97 (144)
..+++...++..+.++... ..++||+.+++.+...|... ...-+.++|++|+|||++|+.++.++... .
T Consensus 163 ~~l~~~~~~l~~~~r~~~l---~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 163 DALEKYTVDLTEKAKNGKI---DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred hHHHHHhhhHHHHHhcCCC---CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 3566666666666665544 57999999999998887532 34456799999999999999999976332 2
Q ss_pred CcEEEEccccccc----chhhHHHHHHHHHHHhhCCCC----cchHHHH
Q 032234 98 EGSYFAHNVRDAE----ETDRIKDLQKQLLYELLNDRN----VRNVRFQ 138 (144)
Q Consensus 98 ~~~~~v~~~~~~s----~~~~~~~l~~~ll~~l~~~~~----i~~~~~~ 138 (144)
...+|..++.... .....+.-++.+++.+..... ||.++..
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l 286 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTI 286 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHH
Confidence 4556654332221 112344555666666544333 5555544
No 17
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.23 E-value=2.2e-06 Score=66.99 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=45.9
Q ss_pred hcccccCCCCCCccchHHHHHHHHHHhh---cCCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 36 RLEETFQSHNKDLVGVERHIKQTEPLLC---TGSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 36 ~~~~~~~~~~~~~vGr~~~~~~l~~~l~---~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.++|+.+ .+++|.+..++.+.-++. .....+-.+-++|++|.||||||..+++.+..++
T Consensus 19 ~lRP~~l---~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 19 SLRPKTL---DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred ccCcccH---HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 4455555 789999998888766554 2345678899999999999999999999875544
No 18
>PRK08118 topology modulation protein; Reviewed
Probab=98.21 E-value=1.8e-06 Score=62.52 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=34.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc---cCCcEEEEcccccccchhhHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE---HFEGSYFAHNVRDAEETDRIKDLQKQL 122 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~---~f~~~~~v~~~~~~s~~~~~~~l~~~l 122 (144)
-|.|+|++|+||||||+.+++.... +|+..+|-..-..+++. ....+++++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~ 56 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNEL 56 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHH
Confidence 4789999999999999999997653 47777754322224432 344444444
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.21 E-value=7e-07 Score=66.16 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 48 LVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 48 ~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
|+||+.+++.+.+++... ....+.|+|+.|+|||+|++.+.+.....-...+|+.
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 689999999999988642 3567889999999999999999997744322344443
No 20
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.18 E-value=2e-06 Score=67.37 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=40.6
Q ss_pred CCccchHHHHHHHHHHhhcC---CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCTG---SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+|+|++..++.+..++... ......+-++|++|+|||+||+.+++.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 57999999999988877521 2335567899999999999999999976543
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.17 E-value=3e-06 Score=66.92 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
|.++.+|..+ .+++|++..++.+..++.. +..+.+-++|++|+||||+|+.+.+.+..
T Consensus 5 w~~ky~P~~~---~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 5 WTEKYRPALL---EDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred hHHhhCCCcH---HHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445566554 6799999999999888743 34445779999999999999999987643
No 22
>PLN03025 replication factor C subunit; Provisional
Probab=98.15 E-value=2.9e-06 Score=67.30 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=44.3
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
|.++.+|... .+++|.+..+..+..++. ....+.+-+||++|+||||+|..+++.+.
T Consensus 3 w~~kyrP~~l---~~~~g~~~~~~~L~~~~~--~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 3 WVEKYRPTKL---DDIVGNEDAVSRLQVIAR--DGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhhcCCCCH---HHhcCcHHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456666655 789999988888887774 33445577999999999999999999763
No 23
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.14 E-value=2.4e-05 Score=69.40 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc------CC
Q 032234 25 LVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH------FE 98 (144)
Q Consensus 25 ~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~ 98 (144)
.+++...++.++...... ..++||+++++.+..+|... ..+.+.++|++|+|||++|..++.++... -.
T Consensus 161 ~l~~~~~~l~~~a~~~~~---~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNL---DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred HHHHHHHHHHHHHHcCCC---CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 444444444444333222 45899999999999988533 33455699999999999999999976421 13
Q ss_pred cEEEEccccccc---c-hhhHHHHHHHHHHHhhCCCC----cchHHHH
Q 032234 99 GSYFAHNVRDAE---E-TDRIKDLQKQLLYELLNDRN----VRNVRFQ 138 (144)
Q Consensus 99 ~~~~v~~~~~~s---~-~~~~~~l~~~ll~~l~~~~~----i~~~~~~ 138 (144)
..+|.-++..+. . ....+.-++.+++.+..... ||.++..
T Consensus 236 ~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l 283 (821)
T CHL00095 236 KLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTL 283 (821)
T ss_pred CeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHH
Confidence 556665443221 1 22345556666666654333 5655543
No 24
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.10 E-value=2.9e-05 Score=69.11 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc------CC
Q 032234 25 LVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH------FE 98 (144)
Q Consensus 25 ~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~ 98 (144)
.+++...+...+.++... ..++||+.+++.+...|... ....+.++|++|+||||+|..+..++... ..
T Consensus 160 ~l~~~~~~l~~~~r~~~l---~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKL---DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHHhcCCC---CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 455555555555555444 56999999999999888533 33455689999999999999999976431 13
Q ss_pred cEEEEccccccc----chhhHHHHHHHHHHHhhC
Q 032234 99 GSYFAHNVRDAE----ETDRIKDLQKQLLYELLN 128 (144)
Q Consensus 99 ~~~~v~~~~~~s----~~~~~~~l~~~ll~~l~~ 128 (144)
..+|..++.... ..-.++.-++.++..+..
T Consensus 235 ~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~ 268 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK 268 (857)
T ss_pred CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 444444333221 122344455566665543
No 25
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.10 E-value=3.5e-05 Score=68.63 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc------C
Q 032234 24 ELVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH------F 97 (144)
Q Consensus 24 ~~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f 97 (144)
..+++...++..+.++... ..++||+.+++.+...|... ....+.++|++|+||||+|..++.++... .
T Consensus 168 ~~l~~~~~~L~~~~r~~~l---d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 168 SALDQYTTDLTAQAREGKI---DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hhHHHHhhhHHHHhcCCCC---CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 3556666666666666544 67999999999998877432 33455699999999999999999986432 2
Q ss_pred CcEEEEccccccc----chhhHHHHHHHHHHHhh
Q 032234 98 EGSYFAHNVRDAE----ETDRIKDLQKQLLYELL 127 (144)
Q Consensus 98 ~~~~~v~~~~~~s----~~~~~~~l~~~ll~~l~ 127 (144)
...+|..++..+. -...++.-++.++..+.
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~ 276 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK 276 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHHHHHHHH
Confidence 3556654444332 12334455555666554
No 26
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=5.2e-06 Score=72.56 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=44.3
Q ss_pred HHhhcccccCCCCCCccchHHHHH---HHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIK---QTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~---~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
+..+++|..+ .+++|++..+. .+.+++. ......+-+||++|+||||||+.+++....+|
T Consensus 18 Laek~RP~tl---dd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 18 LADRLRPRTL---EEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred hHHhcCCCcH---HHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 4556666554 67899987764 4555553 34556778999999999999999999776555
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=1.4e-05 Score=54.58 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=40.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc-----CCcEEEEcccccccchhhHHHHHHHHHHHhhCCC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH-----FEGSYFAHNVRDAEETDRIKDLQKQLLYELLNDR 130 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~-----f~~~~~v~~~~~~s~~~~~~~l~~~ll~~l~~~~ 130 (144)
-+++.|+|.+|+|||+++..+.+..... -...+|+. .....+...+...++..+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~ 66 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPL 66 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccc
Confidence 4678899999999999999999976543 34556776 5555578888888888877543
No 28
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.02 E-value=8e-06 Score=65.90 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=45.6
Q ss_pred CCccchHHHHHHHHHHhhcC----CCCeEEEEEEccCCCchHHHHHHHHHHhhc-------cCCcEEE
Q 032234 46 KDLVGVERHIKQTEPLLCTG----SAGVYILGIWGIGGIGKTTIADAVFNKISE-------HFEGSYF 102 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~----~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-------~f~~~~~ 102 (144)
.+++|.++.++.+..++... ....+++.++|++|+||||||..+.+.+.. .|....|
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 37999999999998887532 334688999999999999999999997654 4556666
No 29
>PRK04195 replication factor C large subunit; Provisional
Probab=98.01 E-value=6.1e-06 Score=68.98 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=45.7
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcC--CCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTG--SAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
|..+.+|..+ .+++|.+..++.+..|+..- ....+.+-|+|++|+||||+|.++++.+.
T Consensus 4 W~eKyrP~~l---~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 4 WVEKYRPKTL---SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred chhhcCCCCH---HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445555554 78999999999999988532 12267888999999999999999998763
No 30
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.00 E-value=1e-05 Score=63.29 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=44.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
|.++.+|.+. .+++|++..++.+..++.. ...+.+-++|++|+||||+++.+++.+..
T Consensus 7 w~~kyrP~~~---~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 7 WVEKYRPRTL---DEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred cchhhCCCcH---HHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445555544 6799999999999888853 33445789999999999999999997643
No 31
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=1.2e-05 Score=67.31 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 32 EVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 32 ~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+.++++|..+ .+++|.+.....+...+... .-.+.+-+||++|+||||+|+.+++.+.
T Consensus 3 ~l~~kyRP~~~---~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 3 ALYRKYRPKTF---SEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred hhHHHHCCCCH---HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35567777776 78999998878787777422 2235678999999999999999988653
No 32
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.00 E-value=6e-05 Score=67.15 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc------CC
Q 032234 25 LVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH------FE 98 (144)
Q Consensus 25 ~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~ 98 (144)
.+++...++..+.++... ..++||+.+++.+...|... ....+.++|++|+|||++|..+..++... ..
T Consensus 155 ~l~~~~~~l~~~~~~~~~---~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 155 ALEKYARDLTERAREGKL---DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred HHHHHhhhHHHHhhCCCC---CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 444444445555444433 56999999999999888533 33445589999999999999999976432 23
Q ss_pred cEEEEcccccc----cchhhHHHHHHHHHHHhhCCC-C----cchHHHH
Q 032234 99 GSYFAHNVRDA----EETDRIKDLQKQLLYELLNDR-N----VRNVRFQ 138 (144)
Q Consensus 99 ~~~~v~~~~~~----s~~~~~~~l~~~ll~~l~~~~-~----i~~~~~~ 138 (144)
..+|..++... .-....+.-++.++..+.... . ||.++..
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l 278 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTL 278 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHh
Confidence 44555433322 111234445566666664322 2 5655544
No 33
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.95 E-value=1.3e-05 Score=65.60 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=41.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc-cCCcEEEEcccccccchhhHHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE-HFEGSYFAHNVRDAEETDRIKDLQKQLLYELL 127 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~v~~~~~~s~~~~~~~l~~~ll~~l~ 127 (144)
..++|+|++|+|||||+..+++.+.. +|+..+|+..+.+- ...+.++++.++..+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vv 225 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVV 225 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEE
Confidence 35779999999999999999997654 59999999833221 2567777777754433
No 34
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=2.4e-05 Score=63.24 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=45.6
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++.+|..+ .+++|.+..++.+.+.+... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 l~~kyrP~~~---~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 6 LARKWRPQYF---RDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHHhCCCch---hhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4556677666 78999999999888877532 2245678999999999999999998764
No 35
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0001 Score=59.87 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=55.9
Q ss_pred CCccchHHHHHHHHHHhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHhhccCC-c-EEEEcccccccchhhHHHHHHH
Q 032234 46 KDLVGVERHIKQTEPLLCT--GSAGVYILGIWGIGGIGKTTIADAVFNKISEHFE-G-SYFAHNVRDAEETDRIKDLQKQ 121 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~-~-~~~v~~~~~~s~~~~~~~l~~~ 121 (144)
..+.+|+.+++++...|.. .......+-|+|.+|+|||+.++.+.+++..... . .++|. .........+...
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHHHH
Confidence 5599999999999877643 1222334889999999999999999998766522 1 45554 3334566677777
Q ss_pred HHHHhhC
Q 032234 122 LLYELLN 128 (144)
Q Consensus 122 ll~~l~~ 128 (144)
++.++.+
T Consensus 93 i~~~~~~ 99 (366)
T COG1474 93 ILNKLGK 99 (366)
T ss_pred HHHHcCC
Confidence 7776653
No 36
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.93 E-value=1e-05 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 588999999999999999999753
No 37
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.92 E-value=1.4e-05 Score=62.78 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=43.1
Q ss_pred hhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 35 KRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 35 ~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++.+|..+ .+++|.+...+.+..++.. ..-...+-++|++|+||||+|..+++...
T Consensus 13 ~kyrP~~~---~~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 13 QKYRPSTI---DECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred eccCCCcH---HHhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 44555444 7899999999988888853 22345667799999999999999998764
No 38
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=2.6e-05 Score=63.75 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++++|..+ .+++|.+..+..|.+++... .-.+.+-++|++|+||||+|..+.+.+..
T Consensus 6 l~~k~RP~~~---~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 6 IARKYRPKKF---ADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHhcCCCcH---hhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4556777666 78999998888888888532 22345789999999999999999987643
No 39
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.87 E-value=5.2e-05 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...+.|+|++|+|||||++.+++...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999999765
No 40
>PRK06696 uridine kinase; Validated
Probab=97.86 E-value=5.8e-05 Score=56.89 Aligned_cols=45 Identities=29% Similarity=0.302 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 51 VERHIKQTEPLLCT-GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 51 r~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
|.+.+++|...+.. ......+|+|.|.+|+||||||..+...+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55666777665543 3456889999999999999999999987643
No 41
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=5.1e-05 Score=55.07 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=26.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc---cCCcEEEEc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE---HFEGSYFAH 104 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~---~f~~~~~v~ 104 (144)
.|.|+|++|+||||||+.+...... +.+...|-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~ 38 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP 38 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc
Confidence 4789999999999999999876432 356666644
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.83 E-value=2.1e-05 Score=63.49 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHHhhcC--C---------CCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCTG--S---------AGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~--~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.++.|++.+++.+...+... . ...+-+.++|++|+|||++|+++++.....|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 56899999999887765311 1 1245688999999999999999998765544
No 43
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=9.4e-05 Score=62.88 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..+..+...+... .-.+.+-++|+.|+||||+|+.++..+.
T Consensus 6 La~KyRP~~f---~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 6 LARKYRPQSF---AEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHCcCcH---HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556677666 78999999998888888532 2245577899999999999999998654
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.82 E-value=7.6e-05 Score=55.72 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 51 VERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 51 r~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
....++.+.+++. ......+-++|++|+|||+||+.+++..........++
T Consensus 22 ~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 22 NAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred cHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3445666777653 23456788999999999999999998765433333344
No 45
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.0001 Score=65.59 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=46.0
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+.++++|..+ .+++|.+..+..|.+++... .-.+.+.++|+.|+||||+|+.+++.+..
T Consensus 6 LaeKyRP~tF---ddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 6 LARKWRPATF---EQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHHHhCCCCH---HHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4556777666 78999999999998887532 12345579999999999999999997654
No 46
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=4.4e-05 Score=65.38 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 32 EVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 32 ~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+.++.+|..+ .+++|++..++.+.+.+... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 5 ~~~~KyRP~~F---~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 5 TFYRKYRPHNF---KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred hHHHHhCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35567777776 78999999998888887432 2245678999999999999999988753
No 47
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=4.4e-05 Score=63.81 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=46.0
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+.++.+|..+ .+++|.+..+..|..++.... -.+.+-++|+.|+||||+|+.++..+..
T Consensus 8 L~~KyRP~~f---~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 8 LSRKYRPQFF---RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHhCCCCH---HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4556677666 789999999988888885322 2345789999999999999999997643
No 48
>PRK07667 uridine kinase; Provisional
Probab=97.76 E-value=8.7e-05 Score=54.80 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=29.7
Q ss_pred HHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 57 QTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 57 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+...+.....+..+|+|.|.+|+||||+|..+...+.
T Consensus 5 ~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 5 ELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444544455678999999999999999999998654
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00011 Score=64.49 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=45.3
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.+++++..+ .+++|.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+.+.
T Consensus 6 LarKYRPqtF---dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 6 LARKWRPKDF---ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHhCCCcH---HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556677766 889999999999998885332 244556999999999999999888653
No 50
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00012 Score=61.76 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=45.9
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.|.+++... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 l~~kyRP~~f---~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 6 LARKWRPRCF---QEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHCCCCH---HHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556777766 78999999999999888532 2234568999999999999999998653
No 51
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=4.9e-05 Score=64.07 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++++|..+ .+++|.+..++.|..++... .-.+.+.++|++|+||||+|+.+++.+.
T Consensus 4 l~~KyRP~~~---~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 4 LYQRARPITF---DEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HHHhhCCCCH---HHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456666665 78999999888888887532 2245668999999999999999999764
No 52
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.74 E-value=8e-05 Score=61.82 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=41.0
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc--cCCcEEEEc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE--HFEGSYFAH 104 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~--~f~~~~~v~ 104 (144)
.++++.+...+.+...|.. ...+.++|++|+|||++|+.+++.+.. .|....|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 3566777777777766642 346778999999999999999997643 466666776
No 53
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.73 E-value=4.1e-05 Score=58.78 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=55.8
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc-cC-CcEEEEccccccc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE-HF-EGSYFAHNVRDAE 110 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f-~~~~~v~~~~~~s 110 (144)
|.++.+|... .++||-++.++.+.-+. .+.+.+.+.|.||+|+||||-+..+++.+.. .+ +...=+. .|
T Consensus 17 wVeKYrP~~l---~dIVGNe~tv~rl~via--~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----AS 87 (333)
T KOG0991|consen 17 WVEKYRPSVL---QDIVGNEDTVERLSVIA--KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----AS 87 (333)
T ss_pred HHHhhCchHH---HHhhCCHHHHHHHHHHH--HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----Cc
Confidence 4445555444 78999999888877554 4567888999999999999999999987644 23 3333333 45
Q ss_pred chhhHHHHHHHH
Q 032234 111 ETDRIKDLQKQL 122 (144)
Q Consensus 111 ~~~~~~~l~~~l 122 (144)
++.++.-+...|
T Consensus 88 deRGIDvVRn~I 99 (333)
T KOG0991|consen 88 DERGIDVVRNKI 99 (333)
T ss_pred cccccHHHHHHH
Confidence 666665544444
No 54
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.73 E-value=0.00035 Score=62.35 Aligned_cols=51 Identities=31% Similarity=0.313 Sum_probs=40.4
Q ss_pred CCCCccchHHHHHHHHHHhhc---CCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 44 HNKDLVGVERHIKQTEPLLCT---GSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 44 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+..+.||+.+++.|...|.. .+..-.++-|+|++|+|||+.++.+.+.+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999887753 222335677999999999999999998764
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.73 E-value=0.00033 Score=61.72 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 25 LVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 25 ~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++...++......-.. ..++||+.+++.+...|.... ...+.++|++|+|||++|+.++..+
T Consensus 168 ~l~~~~~~l~~~a~~g~~---~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 168 RMENFTTNLNQLARVGGI---DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred HHHHHHHhHHHHHHcCCC---CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 555555555554443333 469999999999998886432 2334579999999999999999865
No 56
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.73 E-value=6e-05 Score=64.93 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=37.1
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
++++|++..+..+.+.+. ......+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 679999988887766553 2335578999999999999999998865
No 57
>PF05729 NACHT: NACHT domain
Probab=97.72 E-value=7.2e-05 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=23.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
+++.|+|.+|+||||++..++..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhc
Confidence 468899999999999999999876543
No 58
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.72 E-value=4.4e-05 Score=62.31 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=38.6
Q ss_pred CCccchHHHHHHHHHHhhc---C--------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT---G--------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~---~--------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++.|++.+++.+...+.. . -...+-+.++|++|+|||++|+++++.....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 4688999999988775521 1 1234568899999999999999999876543
No 59
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.71 E-value=5.5e-05 Score=58.30 Aligned_cols=48 Identities=23% Similarity=0.217 Sum_probs=32.9
Q ss_pred CCccchHHHHHHHHH---Hhhc----------CCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEP---LLCT----------GSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~---~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|.+..++.+.. ++.. .......+.++|++|+||||+|+.+++.+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 357888776665543 2210 12235677899999999999999998754
No 60
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.71 E-value=3.1e-05 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEccCCCchHHHHHHHHHHhhcc
Q 032234 72 LGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
|-++|++|+||||+|+.+++.+..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc
Confidence 4689999999999999999987533
No 61
>PRK06893 DNA replication initiation factor; Validated
Probab=97.70 E-value=0.00013 Score=55.32 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=27.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
-+.+-+||++|+|||+|+.++++..........|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 356889999999999999999997644444445554
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=6.6e-05 Score=64.93 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=45.9
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++.+|..+ .+++|.+..++.|.+++... .-.+.+-++|+.|+||||+|+.+++.+.
T Consensus 5 LarKyRPktF---ddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 5 LARKYRPRNF---NELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHhCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456677666 78999999999999888533 2246778999999999999999988754
No 63
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.69 E-value=8.5e-05 Score=62.98 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=47.3
Q ss_pred cchHHHHHHHHH-----HHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 20 SPDSELVEVIAN-----EVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 20 ~~~~~~i~~iv~-----~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..+.+.++++.. .+.++.+|..+ .+++|.+..++.+...+.. .....+-|+|++|+|||++|+.+++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~rp~~f---~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 37 KKELEKLNKMRAIRLTEPLSEKTRPKSF---DEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred hHHHHHHHHhhhhhhcchHHHhhCcCCH---HHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444433 45555555544 6799999988888766532 233456789999999999999998743
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00016 Score=62.53 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.+++++..+ .+++|.+..++.|.+++... .-.+.+-++|+.|+||||+|+.+.+.+.
T Consensus 6 LarKYRPqtF---ddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 6 LARKWRPRDF---TTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHhCCCcH---HHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456677666 78999999999998888532 2245568899999999999999988664
No 65
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=6.4e-05 Score=54.44 Aligned_cols=37 Identities=30% Similarity=0.508 Sum_probs=28.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CC-cEEEEccc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FE-GSYFAHNV 106 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~-~~~~v~~~ 106 (144)
.-|.|.||+|+||||++..+.+.++.. |. .-+|...+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 467899999999999999999987665 54 33444444
No 66
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.65 E-value=8.5e-05 Score=53.72 Aligned_cols=35 Identities=31% Similarity=0.618 Sum_probs=30.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
..+|.+.|+.|+||||+|+.++..+...+...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 45889999999999999999999887777766666
No 67
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=9.3e-05 Score=62.16 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=43.6
Q ss_pred HhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 34 LKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.+|..+ .+++|.+..++.|.+.+... .-.+.+-++|+.|+||||+|+.++..+
T Consensus 4 a~KyRP~~f---~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 4 ALKYRPSSF---KDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred hHHhCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 456667666 78999999888888777432 224578899999999999999998754
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=9.3e-05 Score=62.41 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..+..|...+... .-.+.+-++|+.|+||||+|+.++..+.
T Consensus 11 la~kyRP~~f---~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 11 FARKYRPSNF---AELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred hhhhhCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455666655 78999999888888766422 2346778999999999999999999763
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0001 Score=63.49 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++++|..+ .+++|.+..+..+.+++.. ..-.+.+.++|+.|+||||+|+.+...+.
T Consensus 6 l~~kyRP~~f---~eivGQe~i~~~L~~~i~~-~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 6 IARKYRPSKF---ADITAQEHITHTIQNSLRM-DRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred HHHHHCCCCH---HHhcCcHHHHHHHHHHHHc-CCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566777766 8899999988888887742 22245588999999999999999998764
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=7.9e-05 Score=49.94 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=26.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
..+.|+|++|+||||++..++..+.......+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46889999999999999999997655443344443
No 71
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.62 E-value=5.8e-05 Score=51.00 Aligned_cols=22 Identities=50% Similarity=0.780 Sum_probs=19.9
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.|.|++|+||||+|+.+..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 72
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00049 Score=55.97 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=59.7
Q ss_pred CCCccchHHHHHHHHHHhhcCCCCeE-EEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccchhhHHHHHHHHH
Q 032234 45 NKDLVGVERHIKQTEPLLCTGSAGVY-ILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEETDRIKDLQKQLL 123 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~~~~~~~-~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~~~~~~~l~~~ll 123 (144)
.+++.+|+.++..+..++...+...+ .+-|+|-.|+|||.+.+.+++.. -.+.+|+. .-..+....+...||
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NLENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CCcceeee----hHHhccHHHHHHHHH
Confidence 46788999999999999865544444 44889999999999999998876 23567887 556677778888888
Q ss_pred HHhh
Q 032234 124 YELL 127 (144)
Q Consensus 124 ~~l~ 127 (144)
.++.
T Consensus 78 ~~~~ 81 (438)
T KOG2543|consen 78 NKSQ 81 (438)
T ss_pred HHhc
Confidence 8873
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.61 E-value=0.00015 Score=57.78 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=44.4
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.+..++... .-.+.+-++|++|+||||+|+.+...+.
T Consensus 4 ~~~~~rp~~~---~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 4 LARKYRPQTF---EDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHhCCCcH---hhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455566555 78999999999998888532 2245678899999999999999988653
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00012 Score=63.14 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=45.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.|.+++... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 la~KyRP~~f---~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 6 LARKYRPRSF---SEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHHHHCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566777766 88999998888888888532 2345678999999999999999977653
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.60 E-value=0.00024 Score=53.33 Aligned_cols=47 Identities=19% Similarity=0.449 Sum_probs=31.2
Q ss_pred CCcc-chH-HHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLV-GVE-RHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~v-Gr~-~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++ |.. .....+..+.. .......+.++|.+|+|||+||..+++..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 433 33344555543 22334677899999999999999999864
No 76
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00015 Score=58.41 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.+.+.+... .-.+.+-++|++|+||||+|..+.+.+.
T Consensus 7 ~~~k~rP~~~---~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 7 SARKYRPQTF---DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHHHCCCcH---HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5567777666 78999999999888888532 2245788999999999999999988764
No 77
>PRK12377 putative replication protein; Provisional
Probab=97.58 E-value=0.00068 Score=52.29 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=30.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
...+.++|.+|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 467889999999999999999998876656666665
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00013 Score=62.56 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=45.0
Q ss_pred HhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 34 LKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++.+|..+ .+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+...+.
T Consensus 4 ~~kyRP~~f---~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 4 YRKYRPATF---AEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHHhCCCcH---HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456677666 78999999999999888532 2234568999999999999999998654
No 79
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.58 E-value=7.7e-05 Score=54.97 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=22.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+|+|.|++|+||||+|..+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6899999999999999999998764
No 80
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.00014 Score=62.54 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=46.1
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++++|..+ .+++|.+..++.|.+++... .-.+.+-++|+.|+||||+|+.+.+.+.
T Consensus 14 la~KyRP~~f---~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 14 LARKYRPQTF---DDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HHhhhCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 4556677666 78999999999998888532 2245688999999999999999999764
No 81
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00014 Score=55.03 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=26.7
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..+.+|||-|.+|+||||+|+.+++.+..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988755
No 82
>PTZ00301 uridine kinase; Provisional
Probab=97.55 E-value=0.00012 Score=55.03 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+|||.|.+|+||||||..+.+++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 478999999999999999999877643
No 83
>PRK08727 hypothetical protein; Validated
Probab=97.54 E-value=0.00063 Score=51.71 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=28.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
...+.++|++|+|||+|+.++++..........|+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 356899999999999999999997665544555654
No 84
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00015 Score=61.39 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.+..++... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 l~~k~rP~~f---~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 6 LARKWRPKSF---SELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHhCCCcH---HHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456666665 78999999999888888532 2234567899999999999999988653
No 85
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.52 E-value=0.00013 Score=62.97 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=46.4
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCC---CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGS---AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~---~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++++|... .+++|.+..+..+..++.... ...+++.++|++|+||||+++.++..+.
T Consensus 74 W~eKyrP~~l---del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 74 WVEKYKPETQ---HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hHHHhCCCCH---HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5666666655 789999999999998885432 2345789999999999999999998653
No 86
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.52 E-value=0.00016 Score=61.83 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=40.7
Q ss_pred CccchHHHHHHHHHHhh----cCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 47 DLVGVERHIKQTEPLLC----TGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
+++|.++.++.+...|. .-...-+++.++||+|+||||||+.+...+..+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 57999999999888762 223456799999999999999999999976554
No 87
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00019 Score=61.55 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=45.9
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++++|..+ .+++|.+..++.|..++... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 l~~kyRP~~~---~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 6 LYRKWRSQTF---AELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHHHhCCCCH---HHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567777766 78999999998888887532 2235567999999999999999998764
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.00014 Score=63.14 Aligned_cols=57 Identities=28% Similarity=0.318 Sum_probs=45.3
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++.+|..+ .+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+...+
T Consensus 6 LarKYRP~tF---ddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 6 LARKWRPKTF---ADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHHhCCCCH---HHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4556677666 78999999999999888532 224567899999999999999998864
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.00021 Score=61.84 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+.++.+|..+ .+++|.+..+..|...+.... -.+.+-++|+.|+||||+|+.++..+..
T Consensus 6 La~KyRP~~f---~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 6 LARKWRPQTF---AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHHHhCCCCH---HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4556677666 889999999988888885322 2345678999999999999999886543
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.00026 Score=58.98 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=46.3
Q ss_pred HHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 32 EVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 32 ~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...++.+|..+ .+++|.+..+..+..++... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 ~~~~kyRP~~~---~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 6 VSSRKYRPQTF---SEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred HHHHHhCCCCH---HHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35667777766 78999999999888888532 2235678899999999999999988653
No 91
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.49 E-value=0.0002 Score=59.46 Aligned_cols=52 Identities=29% Similarity=0.363 Sum_probs=39.3
Q ss_pred CCccchHHHHHHHHHHhhc--CC---------CCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCT--GS---------AGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.++.|.+.+++.+...+.. .. ....-+.++|++|+|||++|+++++.....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 5678999999888776531 11 2245677899999999999999999776554
No 92
>PF13173 AAA_14: AAA domain
Probab=97.48 E-value=0.00034 Score=48.12 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=26.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.+++.|.|+.|+|||||+..++.+.. .....+++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec
Confidence 35788999999999999999988665 334455554
No 93
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.48 E-value=0.00014 Score=54.10 Aligned_cols=26 Identities=38% Similarity=0.667 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|+|.|++|+|||||+..++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 94
>PRK03839 putative kinase; Provisional
Probab=97.47 E-value=0.00011 Score=53.27 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=22.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.|.|.|++|+||||+++.++++..-.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47889999999999999999976443
No 95
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.45 E-value=0.00091 Score=56.55 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=38.2
Q ss_pred CCccchHHHHHHHHHHhhc---C--------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT---G--------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~---~--------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++.|.+.+++.+...+.. . -...+-+-++|++|+|||++|+++++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 5678899988887665421 0 1224567899999999999999999987554
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.44 E-value=0.00055 Score=52.10 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=30.3
Q ss_pred ccch-HHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 48 LVGV-ERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 48 ~vGr-~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++|. ...+..+.++.. ....+.+-+||++|+|||+|+..+++...
T Consensus 25 ~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 25 YPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred ccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4452 233444455543 22345788999999999999999998654
No 97
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.44 E-value=0.00083 Score=52.38 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..+++.++|++|+||||.+..++..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999998887765443
No 98
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.43 E-value=0.00049 Score=50.35 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=26.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
-.-+.++|++|+|||.||.++.+....+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356889999999999999999997655544556665
No 99
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.42 E-value=0.00015 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57789999999999999998654
No 100
>PRK08233 hypothetical protein; Provisional
Probab=97.42 E-value=0.00014 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|+|.|++|+||||||..+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998653
No 101
>PRK06217 hypothetical protein; Validated
Probab=97.42 E-value=0.00051 Score=50.09 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=26.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc-C--CcEEEEc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEH-F--EGSYFAH 104 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~-f--~~~~~v~ 104 (144)
.|.|.|++|+||||+|+.+...+.-. | |...|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc
Confidence 48899999999999999999976432 2 4555543
No 102
>PRK06762 hypothetical protein; Provisional
Probab=97.41 E-value=0.00016 Score=51.61 Aligned_cols=24 Identities=38% Similarity=0.525 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998875
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.41 E-value=0.00029 Score=55.81 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=49.1
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc--cCCcEE
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE--HFEGSY 101 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~--~f~~~~ 101 (144)
++++.+|..+ .+++|.+..++-|.+.+.. ...++.-.||++|+|||+-|.+++..+.. .|.+++
T Consensus 26 wteKYrPkt~---de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 26 WTEKYRPKTF---DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred hHHHhCCCcH---HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 5666666666 7899999888888777643 56778889999999999999999887543 255443
No 104
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00025 Score=61.45 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=41.0
Q ss_pred CccchHHHHHHHHHHhhcC----CCCeEEEEEEccCCCchHHHHHHHHHHhhccCC
Q 032234 47 DLVGVERHIKQTEPLLCTG----SAGVYILGIWGIGGIGKTTIADAVFNKISEHFE 98 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~----~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 98 (144)
+-.|.++-++.+...|.-. .-.=++++++||||+|||+|++.++..+...|-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 5689888888887776421 223479999999999999999999998876664
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.00035 Score=58.68 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=44.9
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..+..+..++... .-.+.+-++|+.|+||||+|+.++..+.
T Consensus 6 ~~~kyRP~~f---~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 6 FARKYRPKFF---KEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHhhCCCcH---HHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556667666 78999999999998888532 2234567899999999999999988653
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.00026 Score=62.93 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=46.0
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.+++++..+ .+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+.+.
T Consensus 5 l~~KyRP~~f---~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 5 LYRRYRPATF---AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHhCCCCH---HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567777766 789999998888988885322 234578999999999999999998764
No 107
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00025 Score=56.73 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=26.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh----ccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS----EHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~----~~f~~~~~v~ 104 (144)
++|-++||||+|||+|++++++++. ..|.....+.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 6888999999999999999999643 3354444443
No 108
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.38 E-value=0.00068 Score=50.16 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=29.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.-.++-|+|++|+|||+++..+.......-...+|+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3568899999999999999988776555556777776
No 109
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.37 E-value=0.00039 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.++|++|+|||+||+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999876
No 110
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.37 E-value=0.00093 Score=49.28 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=29.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh-------ccCCcEEEEcccccccchhhHHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS-------EHFEGSYFAHNVRDAEETDRIKDLQKQLLY 124 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~-------~~f~~~~~v~~~~~~s~~~~~~~l~~~ll~ 124 (144)
+..|+|++|+||||++..+...+. ..-...+.+. ......+..+...+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~----~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVV----SPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEE----ESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceee----cCCchhHHHHHHHHHh
Confidence 678899999999987776666551 2333444443 3344555666666555
No 111
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.37 E-value=0.00089 Score=51.54 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=38.0
Q ss_pred CCCCCCccchHHHHHHHHHHhh-c-CCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 42 QSHNKDLVGVERHIKQTEPLLC-T-GSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 42 ~~~~~~~vGr~~~~~~l~~~l~-~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+....+++|.+.+++.+.+-.. . .......+-+||..|+|||+|++++.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3344789999999988754221 1 22345667789999999999999998854
No 112
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.35 E-value=0.0002 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998654
No 113
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.34 E-value=0.00026 Score=52.66 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.-.+|+|.|++|+|||||++.+...+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999988653
No 114
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.34 E-value=0.00021 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..|.++|++|+||||+|+.+...+..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 47889999999999999999998743
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.00034 Score=61.18 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=45.0
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.|...+... .-.+.+-++|+.|+||||+|+.++..+.
T Consensus 8 l~~KyRP~~f---~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 8 LYRKYRPKTF---DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHhCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4556667666 78999999999998888532 2245567899999999999999988653
No 116
>PRK13947 shikimate kinase; Provisional
Probab=97.33 E-value=0.00019 Score=51.41 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.|.|+|++|+||||+|+.+.+.+.-.|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 478999999999999999999876543
No 117
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.33 E-value=0.00041 Score=56.95 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHHHhhc--C---------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT--G---------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~---------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++.|.+..++.+...+.. . -...+-+.++|++|+|||+||+++++.....
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 5788999888887765421 1 1235678899999999999999999865443
No 118
>PRK05642 DNA replication initiation factor; Validated
Probab=97.32 E-value=0.0022 Score=48.76 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=27.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
...+-|||..|+|||.|+.++++.....-..++|+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 357789999999999999999987654334455554
No 119
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.32 E-value=0.0024 Score=44.42 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=46.3
Q ss_pred CccchHHHHHHHHHH----hhc-CCCCeEEEEEEccCCCchHHHHHHHHHHh-----hccCCcEEEEcccccccchhhHH
Q 032234 47 DLVGVERHIKQTEPL----LCT-GSAGVYILGIWGIGGIGKTTIADAVFNKI-----SEHFEGSYFAHNVRDAEETDRIK 116 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~----l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~-----~~~f~~~~~v~~~~~~s~~~~~~ 116 (144)
+++|+.-..+.+.+. +.. .+...-+++.+|++|+|||.+++.+++.+ +..|-.. |+. ...++....+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~-f~~-~~hFP~~~~v~ 103 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ-FIA-THHFPHNSNVD 103 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceee-ecc-cccCCCchHHH
Confidence 567776555555443 332 24557899999999999999999888853 2333222 221 11134445555
Q ss_pred HHHHHHHHHh
Q 032234 117 DLQKQLLYEL 126 (144)
Q Consensus 117 ~l~~~ll~~l 126 (144)
....+|-+.|
T Consensus 104 ~Yk~~L~~~I 113 (127)
T PF06309_consen 104 EYKEQLKSWI 113 (127)
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 120
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0005 Score=58.72 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.+.+.+.... -.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 l~~k~rP~~f---~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 6 LYRKWRPQTF---EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHhCCCcH---HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556677766 889999999999988886432 245567899999999999999988653
No 121
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.00042 Score=59.20 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=45.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++.+|..+ .+++|.+..+..+..++... .-.+.+-++|+.|+||||+|+.++..+.
T Consensus 6 l~~kyRP~~f---~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 6 TATKRRPRDF---NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHhCCCCH---HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3456666666 78999999999998888532 2345678999999999999999998754
No 122
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.31 E-value=0.001 Score=54.98 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=38.3
Q ss_pred CCccchHHHHHHHHHHhhcC------------CCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCTG------------SAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~------------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.+++|++..+..+.-.+... ....+.|-++|++|+|||++|+.+...+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46899988888775433211 11246788999999999999999999876654
No 123
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.00053 Score=58.74 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=45.1
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.|.+++... .-.+.+-++|+.|+||||+|+.+...+.
T Consensus 6 l~~k~RP~~f---~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 6 LARKYRPQTF---SDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHhCCCCH---HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3456677666 78999998888888888532 2245567899999999999999988754
No 124
>PRK00625 shikimate kinase; Provisional
Probab=97.28 E-value=0.00024 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.|.++||+|+||||+++.+.+++.-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3778999999999999999887643
No 125
>PRK04040 adenylate kinase; Provisional
Probab=97.28 E-value=0.00034 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|+|++|+||||+++.+...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998873
No 126
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.26 E-value=0.00072 Score=51.12 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.5
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.....+++|.|+.|+|||||++.+...+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999999886543
No 127
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00044 Score=55.82 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=35.9
Q ss_pred CCccchHHHHHHHHHHhhcC---C--------CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTG---S--------AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~---~--------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++=|.+++++++...+... . +.++=+-+||++|+|||-||++++++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 45667899999887654311 1 235667789999999999999999853
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.00059 Score=58.93 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=46.3
Q ss_pred HHHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 32 EVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 32 ~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++.++++..+ .+++|.+..+..|..++.... -.+.+-++|+.|+||||+|+.++..+..
T Consensus 5 pl~~kyRP~~f---~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 5 PLHHKYRPQRF---DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHhCCCcH---hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 34566666665 789999999999988886332 2356778999999999999999997643
No 129
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.25 E-value=0.0011 Score=48.08 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 48 LVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 48 ~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++|....+.++.+.+..-......|-|+|..|+||+.+|+.+++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 46666677776665543222224455999999999999999999543
No 130
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0008 Score=57.75 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=41.9
Q ss_pred CCccchHHHHHHHHHHhhcC--C--------CCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEE
Q 032234 46 KDLVGVERHIKQTEPLLCTG--S--------AGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSY 101 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~--~--------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~ 101 (144)
.++=|.+..+.+|..++..- . ...+=+-+||++|+|||.||+++++.+.-.|-...
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 56778999888888776421 1 12455678999999999999999998776665443
No 131
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.24 E-value=0.00023 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
|-|+|++|+|||+||..+...+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999776543
No 132
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00055 Score=59.57 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=41.7
Q ss_pred CccchHHHHHHHHHHhhc----CCCCeEEEEEEccCCCchHHHHHHHHHHhhccCC
Q 032234 47 DLVGVERHIKQTEPLLCT----GSAGVYILGIWGIGGIGKTTIADAVFNKISEHFE 98 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 98 (144)
+-.|+++-++.+..++.- .+.+=.+++.+|++|+|||++|+.|+..+...|.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 568998888888777642 2345679999999999999999999998876654
No 133
>PRK06526 transposase; Provisional
Probab=97.23 E-value=0.00048 Score=53.22 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=25.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
...+.++|++|+|||+||..+.......-..+.|+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34678999999999999999988654432333343
No 134
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.00055 Score=59.01 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=45.6
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++++|..+ .+++|.+..+..|.+++... .-.+.+-++|+.|+||||+|+.+.+.+.
T Consensus 6 la~KyRP~sf---~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 6 LTARYRPQTF---AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHhCCCCH---HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 4566677666 78999998888888887532 2246778899999999999999998764
No 135
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.00087 Score=52.26 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=28.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
..+.++|++|+|||.||.++.+........+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999997765555566665
No 136
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.21 E-value=0.00025 Score=52.21 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 137
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.21 E-value=0.00072 Score=48.66 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=27.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
.+|=+.|.+|+||||||+.+..++...-....++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 4677889999999999999999987766666665
No 138
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.21 E-value=0.00073 Score=55.86 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=39.1
Q ss_pred CCccchHHHHHHHHHHhhcC--------C----CCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCTG--------S----AGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~--------~----~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
..++|++..+..+...+... . .....|-++|++|+||||||+.+...+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 46899999888886655320 0 1136788999999999999999999776544
No 139
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.21 E-value=0.00033 Score=43.26 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|.|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999885
No 140
>PRK06547 hypothetical protein; Provisional
Probab=97.21 E-value=0.00074 Score=49.21 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.....+|+|.|++|+||||+|..+....
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998864
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=97.21 E-value=0.00071 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..+.++|++|+||||+|+.++...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999997753
No 142
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.20 E-value=0.0019 Score=48.44 Aligned_cols=47 Identities=23% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 58 TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 58 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
|-.+|...-..-.++-|+|.+|+|||++|..++......-..++|+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33344322233568899999999999999998876655556677775
No 143
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.19 E-value=0.00028 Score=49.25 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccCCc
Q 032234 72 LGIWGIGGIGKTTIADAVFNKISEHFEG 99 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 99 (144)
+-++|.+|+||||+|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 5689999999999999999977666644
No 144
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.0013 Score=50.61 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 56 KQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 56 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
..+.++..........+.++|.+|+|||+||.++++.+...-..++++.
T Consensus 86 ~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 86 SKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344444322233457789999999999999999997755444555554
No 145
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.18 E-value=0.00055 Score=50.05 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|+|.|.+|+||||||..+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988754
No 146
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.18 E-value=0.00048 Score=53.83 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCccchHHHHHH---HHHHhhc----CCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 46 KDLVGVERHIKQ---TEPLLCT----GSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 46 ~~~vGr~~~~~~---l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
++++|.+..+++ +...|.. .+...+-+-.+|++|+|||.+|+++.+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 578999987765 3344432 2456888999999999999999998874
No 147
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.17 E-value=0.0007 Score=59.87 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=38.1
Q ss_pred CccchHHHHHHHHHHhhc----CCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 47 DLVGVERHIKQTEPLLCT----GSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
+.+|.+..++.+..++.. ....-.++.++|++|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 477888888887765531 122335788999999999999999999875554
No 148
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.17 E-value=0.00034 Score=48.49 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+|.|.|++|+||||+|+.+.....-
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999987643
No 149
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0024 Score=52.61 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|+++|++|+||||++..++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 150
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.17 E-value=0.0024 Score=47.60 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 58 TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 58 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
|..+|...-..-.++.|+|.+|+|||||+..++......-...+|+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44444322234578889999999999999998876544334455553
No 151
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.17 E-value=0.00041 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4788999999999999999988653
No 152
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.15 E-value=0.0008 Score=48.52 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+|.+.|++|+||||+|+.+...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35889999999999999999998764
No 153
>PRK14974 cell division protein FtsY; Provisional
Probab=97.15 E-value=0.0039 Score=50.13 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
...+|.++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999888887765443
No 154
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.15 E-value=0.00094 Score=52.32 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=30.9
Q ss_pred CccchHHHHHHHHHH---hhcC----------CCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 47 DLVGVERHIKQTEPL---LCTG----------SAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~---l~~~----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+++|.+..++.+..+ +... ......+.++|++|+||||+|+.++..+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 468887766665443 2100 0112357799999999999998877754
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0009 Score=56.84 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=44.0
Q ss_pred HhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 34 LKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.+|..+ .+++|.+..++.+...+... .-.+.+-++|+.|+||||+|+.+...+
T Consensus 5 ~~KyRP~~f---deiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 5 ALKYRPKHF---DELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHHCCCCH---HHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 456677666 78999999888888888532 224466899999999999999998865
No 156
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.15 E-value=0.00076 Score=55.60 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCccchHHHHHHHHHHhh-------cC-----C--CCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLC-------TG-----S--AGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~-------~~-----~--~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++|.+..++.+...+. .. + ..-..+.++|++|+|||+||+.++..+...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 358999988887743321 00 0 013567899999999999999998765433
No 157
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.00034 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|.|.|++|+||||+|+.+..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47799999999999999998865
No 158
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.14 E-value=0.00093 Score=57.88 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=51.1
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc-cCCcEEEEcccccccchhhHHHHHHHHHH
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE-HFEGSYFAHNVRDAEETDRIKDLQKQLLY 124 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~v~~~~~~s~~~~~~~l~~~ll~ 124 (144)
++++|.+..++.+...+... +.+.++|++|+||||+|+.+...+.. +++..+|+.+ .......+.+.+..
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~~v~~ 101 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIRTVPA 101 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHHHHHH
Confidence 67899998888887766432 36889999999999999999987643 4688888874 33344455555543
No 159
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.14 E-value=0.00042 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEEccCCCchHHHHHHHHHHhhc
Q 032234 72 LGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
|.++|++|+||||+|+.+...+.-
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999987644
No 160
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.14 E-value=0.00034 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|||.|.+|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998764
No 161
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.12 E-value=0.00067 Score=47.17 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=23.9
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 72 LGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
+.|+|++|+||||++..+.......-...+|+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 67899999999999999988654433344444
No 162
>PHA00729 NTP-binding motif containing protein
Probab=97.12 E-value=0.00061 Score=51.84 Aligned_cols=27 Identities=37% Similarity=0.365 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....|.|+|.+|+||||||..+.+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999998754
No 163
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.12 E-value=0.00067 Score=59.55 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=37.9
Q ss_pred CCccchHHHHHHHHHHhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
+++.|.+..++.+.+++... -...+.+.++|++|+||||||+.+++.....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 45889998888887765311 1224567899999999999999999876443
No 164
>PRK13949 shikimate kinase; Provisional
Probab=97.11 E-value=0.00044 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
-|.|+|++|+||||+++.++..+.-.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 47899999999999999999876543
No 165
>PRK06921 hypothetical protein; Provisional
Probab=97.10 E-value=0.0011 Score=51.44 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
...+.++|.+|+|||+|+.++++.+... -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 5678899999999999999999987655 45566665
No 166
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.09 E-value=0.0037 Score=47.15 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=27.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCC--cEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFE--GSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~--~~~~v~ 104 (144)
....+-|||..|+|||.|..++++.+..... .++++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3456789999999999999999998765432 344553
No 167
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.09 E-value=0.0008 Score=56.50 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=34.6
Q ss_pred CCccchHHHHHHHHHHhhc----------CCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCT----------GSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++.|.+..++.+..++.. .....+-+-++|++|+|||+||+++++...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 4688988777666554321 012244577899999999999999988643
No 168
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.08 E-value=0.0021 Score=55.44 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=41.7
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
++++|.+..++.+...+... +.+.++|++|+||||+++.+.+.+... |...+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 57889998887777666432 255599999999999999999987554 55556665
No 169
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.0034 Score=49.63 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=38.0
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.+..++.+...+.. ..-.+.+-++|+.|+||||+|..++..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~-~~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK-NRFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred hhccCcHHHHHHHHHHHHc-CCCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 4688998888888888742 2234577899999999999999999965
No 170
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.07 E-value=0.0005 Score=56.01 Aligned_cols=31 Identities=39% Similarity=0.575 Sum_probs=26.1
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.-+..+++||++|+|||.+|++++..+...|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 3467899999999999999999999765543
No 171
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.0012 Score=54.15 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=38.8
Q ss_pred CCccchHHHHHHHHHHhhcCCC--------CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSA--------GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~--------~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++++|.+..++.|.+++..... -.+.+-++|++|+||||+|..+...+.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 5688999988988888864321 245678999999999999999988653
No 172
>PRK06620 hypothetical protein; Validated
Probab=97.07 E-value=0.0012 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.+-+||++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568899999999999999987754
No 173
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.06 E-value=0.00054 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.|.|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999988864
No 174
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.06 E-value=0.0012 Score=48.70 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.3
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....++.|+|++|+||||||+.+...+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999998764
No 175
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.05 E-value=0.0023 Score=48.11 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=27.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh-cc-----CCcEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS-EH-----FEGSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~-~~-----f~~~~~v~ 104 (144)
.-.++.|+|++|+|||+|+..++-... .. -...+|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 356889999999999999998865422 11 25677776
No 176
>PRK13946 shikimate kinase; Provisional
Probab=97.05 E-value=0.00055 Score=50.04 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+.|.+.|++|+||||+++.+..++.-.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~ 37 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLP 37 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3578999999999999999999987544
No 177
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.04 E-value=0.0027 Score=47.43 Aligned_cols=47 Identities=21% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccC------CcEEEEc
Q 032234 58 TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHF------EGSYFAH 104 (144)
Q Consensus 58 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f------~~~~~v~ 104 (144)
+..+|...-..-.++.|+|.+|+|||+|+..+.-.....- ..++|+.
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 3344432223356889999999999999998876543333 4566765
No 178
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0022 Score=52.49 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCccchHHHHHHHHHHh-----hcC-----CCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLL-----CTG-----SAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l-----~~~-----~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
+++.|.++.++-|.... ..+ ....+-+-++|++|+|||-||++++......|
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTF 273 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTF 273 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeE
Confidence 67899988777765532 111 23466778899999999999999999766554
No 179
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.04 E-value=0.0013 Score=46.39 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=25.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEE
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFA 103 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v 103 (144)
++|.|+|..|+|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 478999999999999999999987654 4444333
No 180
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.04 E-value=0.003 Score=56.03 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=39.7
Q ss_pred CCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 42 QSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 42 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
|.....++-|....+.+. .....+++.|.|++|.||||++...... +...+|++
T Consensus 10 p~~~~~~~~R~rl~~~l~-----~~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~ 63 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLS-----GANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS 63 (903)
T ss_pred CCCccccCcchHHHHHHh-----cccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe
Confidence 344467888876555443 2335789999999999999999987753 33789997
No 181
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.03 E-value=0.0005 Score=50.86 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|+|.|.+|+||||||+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999975
No 182
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.02 E-value=0.0016 Score=50.05 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=33.5
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
+.-+++.|+|.+|+|||+++..+......+.+.++|++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44678899999999999999998888777799999997
No 183
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.01 E-value=0.0005 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999998874
No 184
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.01 E-value=0.0029 Score=50.46 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+++++|++|+||||++..++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999998886543
No 185
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.00 E-value=0.0032 Score=52.31 Aligned_cols=29 Identities=38% Similarity=0.335 Sum_probs=25.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
...+-|+|++|+|||+|+.++++.+...+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 176 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN 176 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 45688999999999999999999876654
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=96.99 E-value=0.00075 Score=58.47 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=34.8
Q ss_pred CCccchHHHHHHHHHHhhc--CC--------CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCT--GS--------AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~~--------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.|.++.++.+..++.. .. ...+-+-++|++|+|||+||++++...
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4688988877776655421 11 124567899999999999999998854
No 187
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.99 E-value=0.0031 Score=48.96 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 56 KQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 56 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+.+.+.....+..+|||.|+||+||+||...+...+..
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 3344334334456789999999999999999988876544
No 188
>PRK14530 adenylate kinase; Provisional
Probab=96.99 E-value=0.00069 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.|.|.|++|+||||+|+.+.....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988653
No 189
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.98 E-value=0.0025 Score=46.15 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+|.|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999997643
No 190
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.98 E-value=0.0042 Score=49.26 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=28.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
..-+-++|..|+|||.||.++++.+...-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456789999999999999999998765544455564
No 191
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.98 E-value=0.00098 Score=55.96 Aligned_cols=45 Identities=22% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|+++.++.+...+..+ ..+-++|++|+|||+||+.++....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 35899999888876655322 3567899999999999999998653
No 192
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.98 E-value=0.0071 Score=47.47 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCC-CCeEEEEEEccCCCchHHHHHHHHHHhhccC---CcEEEEcccccccchhhHHHHHHHHHHHhhCC
Q 032234 54 HIKQTEPLLCTGS-AGVYILGIWGIGGIGKTTIADAVFNKISEHF---EGSYFAHNVRDAEETDRIKDLQKQLLYELLND 129 (144)
Q Consensus 54 ~~~~l~~~l~~~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f---~~~~~v~~~~~~s~~~~~~~l~~~ll~~l~~~ 129 (144)
-.+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+.+.... ...+++..-.......-...+...+...+...
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~ 83 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKH 83 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHHh
Confidence 3456667776433 6688999999999999999999999876651 12222321111333444566666776666554
No 193
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.97 E-value=0.0006 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|.|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 468999999999999999998843
No 194
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.97 E-value=0.0022 Score=50.15 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=37.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccchhhHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEETDRIKDLQKQLL 123 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~~~~~~~l~~~ll 123 (144)
.-++|.|.+|+|||||+..+++.+..+|+..+++.-+.+-. ..+..+.+.+.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~--~Ev~e~~~~~~ 121 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT--REGNDLYHEMK 121 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc--HHHHHHHHHHH
Confidence 46789999999999999999999887887777766444332 34444444443
No 195
>PRK04182 cytidylate kinase; Provisional
Probab=96.96 E-value=0.00078 Score=48.28 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|.|.|+.|+||||+|+.+..++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 688999999999999999998764
No 196
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.96 E-value=0.00053 Score=48.79 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.1
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
|.++|++|+||||+|..+.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46889999999999999988753
No 197
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.95 E-value=0.0024 Score=51.27 Aligned_cols=30 Identities=30% Similarity=0.518 Sum_probs=25.5
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.....+|+|.|++|+|||||+..+...+..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999998776554
No 198
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0055 Score=48.77 Aligned_cols=83 Identities=24% Similarity=0.307 Sum_probs=57.1
Q ss_pred CCccchHHHHHHHHHHhhcC--C---------CCeEEEEEEccCCCchHHHHHHHHHHhh--------------------
Q 032234 46 KDLVGVERHIKQTEPLLCTG--S---------AGVYILGIWGIGGIGKTTIADAVFNKIS-------------------- 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~--~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~-------------------- 94 (144)
.++=|.+.+++++....... . ....=+.+||.+|+|||-||++++|...
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence 45678899999887654321 1 2345667899999999999999988422
Q ss_pred -----------ccCCcEEEEcccccc------cchhhHHHHHHHHHHHhhC
Q 032234 95 -----------EHFEGSYFAHNVRDA------EETDRIKDLQKQLLYELLN 128 (144)
Q Consensus 95 -----------~~f~~~~~v~~~~~~------s~~~~~~~l~~~ll~~l~~ 128 (144)
++-...+|+..+..+ +++.+-..+|+.+|+.+.+
T Consensus 265 klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ 315 (440)
T KOG0726|consen 265 KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 315 (440)
T ss_pred HHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh
Confidence 123467888765433 4566778888888766554
No 199
>PRK08116 hypothetical protein; Validated
Probab=96.94 E-value=0.0012 Score=51.29 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=27.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.+.+||.+|+|||.||.++++.+..+....+++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4779999999999999999998766544555554
No 200
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.94 E-value=0.0018 Score=48.65 Aligned_cols=42 Identities=31% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHH
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
++++|.+..++.+.-... +.+-+-++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHH
Confidence 578999988877753332 235788999999999999999987
No 201
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.0048 Score=51.09 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.++.++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999988877554
No 202
>PRK05439 pantothenate kinase; Provisional
Probab=96.93 E-value=0.002 Score=51.28 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....+|||.|.+|+||||+|..+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999888554
No 203
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.0022 Score=51.80 Aligned_cols=53 Identities=30% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 42 QSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 42 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
|.....++|.+...+.+...+... .-.+.+-++|+.|+||||+|..+...+..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 344478999999988888887532 23456889999999999999999887543
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=96.92 E-value=0.0014 Score=50.74 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=24.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
..+.|+|++|+|||+||.++.......-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4577999999999999999987644333333344
No 205
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.92 E-value=0.0008 Score=49.60 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|+|+|+.|+|||||++.++...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998864
No 206
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.92 E-value=0.0013 Score=55.84 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=40.9
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcC---CCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTG---SAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.++..|... .+++--..-++++..||... ....+++.+.|++|+||||.++.+++.+
T Consensus 9 W~~ky~P~~~---~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTL---DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCH---HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3344444433 44555556678888888642 2335688999999999999999999975
No 207
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.91 E-value=0.0021 Score=57.52 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCccchHHHHHHHHHHhhcC-----CC--CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----SA--GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----~~--~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++|.+..++.+...+... +. ...++.++|++|+|||+||+.+++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999888887665421 11 2347889999999999999999986643
No 208
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.91 E-value=0.0088 Score=49.74 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
...+|.++|++|+||||.+..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999998866543
No 209
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0023 Score=51.31 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=28.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
..+.++|.+|+|||+||.++++.+...-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67889999999999999999997655544556665
No 210
>PRK13975 thymidylate kinase; Provisional
Probab=96.90 E-value=0.001 Score=48.58 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..|.|.|+.|+||||+++.++..+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47889999999999999999998753
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.89 E-value=0.0018 Score=48.11 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=24.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
+++|.++|+.|+||||.+-.++.....+-.....+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 36899999999999998887777654443334444
No 212
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.88 E-value=0.00077 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.|+|+.|+|||||++.+.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68899999999999999988643
No 213
>PRK13948 shikimate kinase; Provisional
Probab=96.88 E-value=0.00094 Score=49.16 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
....|.++|+.|+||||+++.+...+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34678899999999999999999876544
No 214
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.88 E-value=0.0013 Score=51.86 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+.+|||.|+.|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999988766543
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.87 E-value=0.0018 Score=56.88 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++.|.+..++.+...+.. .-...+-+-++|++|+|||+||+++++.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4577888877777665431 11224457889999999999999999865443
No 216
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.87 E-value=0.0014 Score=50.13 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+|.++|++|+||||+|+.+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999887654
No 217
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.87 E-value=0.0021 Score=57.02 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=39.7
Q ss_pred CccchHHHHHHHHHHhhc----CCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 47 DLVGVERHIKQTEPLLCT----GSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
+.+|.+..++.+..++.. ....-.++.++|++|+||||+++.++..+...|
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 578999988888877642 122345789999999999999999998765544
No 218
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.86 E-value=0.0025 Score=44.65 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-.+|.+.|.-|+||||+++.+...+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999999864
No 219
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.86 E-value=0.0097 Score=49.37 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+|.++|++|+||||++..++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999988775543
No 220
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0019 Score=47.89 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++.|.|+.|+||||++..+...+..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 368899999999999999887765433
No 221
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.86 E-value=0.0021 Score=53.00 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.4
Q ss_pred CCccchHHHHHHHHHHh-------hc---CC--C----CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLL-------CT---GS--A----GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l-------~~---~~--~----~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++|.+..++.+...+ .. .. + .-..+.++|++|+|||++|+.++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 46799998888775433 11 01 1 1246889999999999999999876543
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0082 Score=46.88 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=36.4
Q ss_pred CccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 47 DLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+++|.+.....+..+........+.+-++|++|+||||+|..+.+.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4567777777777776533323344889999999999999999997653
No 223
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.85 E-value=0.001 Score=48.27 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..|.++|+.|+||||+++.+.....-
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~ 30 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 46889999999999999999987543
No 224
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.84 E-value=0.0011 Score=47.55 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.|.++|++|+||||+++.+.+.+.-
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4778999999999999999987644
No 225
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.84 E-value=0.0065 Score=54.37 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=53.3
Q ss_pred ccchHHHHHHHHHHhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHhhcc---CCcEEEEcccccccchhhHHHHHHHHH
Q 032234 48 LVGVERHIKQTEPLLCT-GSAGVYILGIWGIGGIGKTTIADAVFNKISEH---FEGSYFAHNVRDAEETDRIKDLQKQLL 123 (144)
Q Consensus 48 ~vGr~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~---f~~~~~v~~~~~~s~~~~~~~l~~~ll 123 (144)
++||+.+++.|...+.. ....-.++.+.|..|+|||+|+..++..+... |-...|-. ....++-..+....+++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQ-FERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhccc-ccCCCchHHHHHHHHHHH
Confidence 78999999998777654 33446699999999999999999999976443 22221111 111233344555566666
Q ss_pred HHhhCCC
Q 032234 124 YELLNDR 130 (144)
Q Consensus 124 ~~l~~~~ 130 (144)
.+++.+.
T Consensus 81 ~~ll~~~ 87 (849)
T COG3899 81 GQLLSES 87 (849)
T ss_pred HHHhhcc
Confidence 6664443
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0098 Score=45.96 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=29.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5667889999999999999999998874434555554
No 227
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.84 E-value=0.0021 Score=49.65 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+-++|++|+|||+||+.++.....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4458999999999999999986543
No 228
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.83 E-value=0.00086 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
++.|+|+.|+|||||++.++...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67899999999999999997754
No 229
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.83 E-value=0.0014 Score=48.01 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3568999999999999999999887654
No 230
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.0033 Score=51.06 Aligned_cols=51 Identities=22% Similarity=0.110 Sum_probs=39.7
Q ss_pred CCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 42 QSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 42 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|....+++|.+...+.+.+.+... .-.+.+-++|+.|+||+|+|..+...+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334468999999888888877532 224468899999999999999988865
No 231
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0011 Score=48.62 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|.|.|++|+||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999974
No 232
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.82 E-value=0.0016 Score=47.44 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=27.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcE
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGS 100 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~ 100 (144)
.+++.|+|+.|+|||||+..+.......|...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~ 33 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRV 33 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccc
Confidence 36788999999999999999999887777433
No 233
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.82 E-value=0.0013 Score=49.03 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 65 GSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 65 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.....+.|.|.|++|+|||||+..+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445678889999999999999998753
No 234
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.81 E-value=0.0019 Score=46.53 Aligned_cols=33 Identities=24% Similarity=0.110 Sum_probs=23.3
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 72 LGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
+.|.|++|+|||+|+..+.......=..++|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 568999999999999887664333334455554
No 235
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.0063 Score=50.57 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=27.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC-C-cEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF-E-GSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~-~~~~v~ 104 (144)
...+-+||++|+|||+|+.++++.+...+ . ...|+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 45688999999999999999999876543 3 344543
No 236
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.80 E-value=0.0013 Score=46.80 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=21.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|.|.|+.|+||||+|+.+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988653
No 237
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.80 E-value=0.002 Score=55.49 Aligned_cols=34 Identities=32% Similarity=0.611 Sum_probs=27.4
Q ss_pred HHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 60 PLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 60 ~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+++....+.+.+|+|.|+.|+||||||+.+...+
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3443345568899999999999999999998864
No 238
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0027 Score=54.83 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=44.5
Q ss_pred HhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 34 LKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++++|..+ .+++|.+..++.+..++... .-.+.+-++|+.|+||||+|..+...+.
T Consensus 8 ~~kyRP~~f---~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 8 ARKYRPSTF---ESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHCCCCH---HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456677666 78999999999998888532 2245578999999999999999888653
No 239
>PF13245 AAA_19: Part of AAA domain
Probab=96.78 E-value=0.0062 Score=38.45 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.0
Q ss_pred eEEEEEEccCCCchH-HHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKT-TIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKT-tLa~~v~~~~ 93 (144)
-++..|.|++|+||| |++..+..-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 356778999999999 5555555544
No 240
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.78 E-value=0.0063 Score=47.00 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=39.4
Q ss_pred CCccchHHHHHHHHHHh-hc-CCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCc
Q 032234 46 KDLVGVERHIKQTEPLL-CT-GSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEG 99 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l-~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 99 (144)
..++|.+.+.+.+.+-. .. ......-+-+||.-|+||++|++++.+.+....-.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 56899998888775422 11 22335677899999999999999999977655444
No 241
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.78 E-value=0.0032 Score=49.90 Aligned_cols=24 Identities=46% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+++-+.|-||+||||+|-+.+-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 577889999999999998766644
No 242
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.78 E-value=0.0028 Score=50.68 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=32.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccchhhHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEETDRIKDLQK 120 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~~~~~~~l~~ 120 (144)
.+++-+.|.||+||||+|-+..-..........-++ ..+.+++.++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhc
Confidence 367888999999999999997776655554455554 444445544444
No 243
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.77 E-value=0.0027 Score=55.80 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=37.4
Q ss_pred CCccchHHHHHHHHHHhhcC-----CC--CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----SA--GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----~~--~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|.+..++.+...+... +. ...++.++|++|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46889998888887765421 11 234678999999999999999998763
No 244
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.77 E-value=0.0049 Score=48.61 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEE
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSY 101 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~ 101 (144)
.+..++.|.|.+|+|||||...+.+.+.......+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 46899999999999999999999998766554333
No 245
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.76 E-value=0.0021 Score=49.43 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=30.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHN 105 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~ 105 (144)
.-.+.|+|..|+|||||...+.......|.+.++++.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 3467899999999999999999888888877766653
No 246
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0014 Score=49.39 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+|+|-||=|+||||||+.+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36889999999999999999999765
No 247
>PRK14527 adenylate kinase; Provisional
Probab=96.76 E-value=0.0015 Score=47.82 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|.|.|++|+||||+|+.+..+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 248
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.75 E-value=0.0015 Score=43.64 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|.|+|..|+|||||.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 678999999999999999873
No 249
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.75 E-value=0.0054 Score=50.16 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=27.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCC--cEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFE--GSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~--~~~~v~ 104 (144)
...+-|+|++|+|||+|++++++.+..... ..+++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 456789999999999999999998765432 344443
No 250
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.75 E-value=0.0055 Score=44.67 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=22.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+|.|.|..|+||||+++.+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 251
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.75 E-value=0.0013 Score=46.81 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=17.6
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|.|.|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 689999999999999999876
No 252
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.74 E-value=0.0024 Score=49.94 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
++|+|+|.+|+|||||+..+...+.... .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999876655 344443
No 253
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.74 E-value=0.0052 Score=50.06 Aligned_cols=54 Identities=26% Similarity=0.287 Sum_probs=36.7
Q ss_pred CCccchHHHHHH---HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCc
Q 032234 46 KDLVGVERHIKQ---TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEG 99 (144)
Q Consensus 46 ~~~vGr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 99 (144)
..+||+....+. +.+++....-.=+.|-+.|++|+|||+||..+...+....+-
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 579999876654 456665433233677799999999999999999998765443
No 254
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0014 Score=47.83 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=38.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccC-CcEEEEccccc-----c---cchhhHHHHHHHHHHHhhCCC
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHF-EGSYFAHNVRD-----A---EETDRIKDLQKQLLYELLNDR 130 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~v~~~~~-----~---s~~~~~~~l~~~ll~~l~~~~ 130 (144)
.|.++||.|+||||+.+.++..+.-+| |.=-++..-.. + .-......+-..++..++...
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~ 72 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEED 72 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Confidence 467899999999999999999876665 21122211111 1 124455666677777777665
No 255
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.74 E-value=0.0058 Score=54.49 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=37.2
Q ss_pred CCccchHHHHHHHHHHhhcC-----CC--CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----SA--GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----~~--~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|.+..++.+...+... +. ....+-++|+.|+|||+||+.+.+.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46899999998887765321 11 234667899999999999999998753
No 256
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.73 E-value=0.0043 Score=50.37 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=39.7
Q ss_pred CCCccchHHHHHH---HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 45 NKDLVGVERHIKQ---TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 45 ~~~~vGr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
...+||+....+. +.+++....-.=+-|-+.|++|+|||+||..+...+...
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4579998876654 466765444445678899999999999999999988653
No 257
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0069 Score=53.48 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=46.8
Q ss_pred CCccchHHHHHHHHHHhhcC-------CCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccchhhHHH
Q 032234 46 KDLVGVERHIKQTEPLLCTG-------SAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEETDRIKD 117 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~~~~~~~ 117 (144)
..++|++..+..+.+.+... +....+.-..||.|+|||-||+.++..+-..-+..+-+ ||++..+.+.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHHHH
Confidence 46899999998887765422 12356777899999999999999998763322333333 4444444444433
No 258
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.71 E-value=0.0019 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEccCCCchHHHHHHHHHHhhcc
Q 032234 74 IWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 74 I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
|+||+|+||||++..+.+-....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999865443
No 259
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0032 Score=55.68 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCccchHHHHHHHHHHhhcC-------CCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTG-------SAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|.+..++.+...+... ......+-++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999998887766421 11245678999999999999999988764
No 260
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.70 E-value=0.0022 Score=51.87 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++|.++.+..|...+ -++.+.-+-|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~--~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNV--IDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhc--cCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 67999998777765443 23455566699999999999999998843
No 261
>PLN02200 adenylate kinase family protein
Probab=96.70 E-value=0.0019 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|.|.|++|+||||+|..+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998754
No 262
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.70 E-value=0.0037 Score=53.55 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=34.6
Q ss_pred CccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 47 DLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+.|.+-.+.|.++.......-.+|.++|++|+||||+|+.++..+..
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3445554455555554434444558889999999999999999997754
No 263
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.69 E-value=0.0019 Score=48.04 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..+|.|.|++|+||||+|..+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999998864
No 264
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.68 E-value=0.0034 Score=46.63 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=25.9
Q ss_pred CCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 65 GSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 65 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+.++++|+++|..|+|||||...+.....
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999999887654
No 265
>PRK13768 GTPase; Provisional
Probab=96.68 E-value=0.0031 Score=48.60 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++.|.|+||+||||++..+.....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE 27 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH
Confidence 5788999999999999988877553
No 266
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.68 E-value=0.0025 Score=51.18 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCCccchHHHHHHHHH-HhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 45 NKDLVGVERHIKQTEP-LLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~-~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-+.++|.+..+..+.- .+. .+...+-+.|.+|+||||+|+.+..-+
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~---~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID---PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc---cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3678999988877653 332 234557899999999999999998754
No 267
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.68 E-value=0.0016 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.|.|++|+||||+|..+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998864
No 268
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0019 Score=49.62 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.++||+|..|+|||||++.+..-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 47899999999999999998773
No 269
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0014 Score=47.87 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVF 90 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~ 90 (144)
.|.|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999887
No 270
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0017 Score=47.17 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+|.|-|++|+||||+|+.+.+...-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 5789999999999999999987643
No 271
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.015 Score=47.71 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+++.++|+.|+||||++..++....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999998877543
No 272
>PRK15453 phosphoribulokinase; Provisional
Probab=96.66 E-value=0.0035 Score=49.35 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...+|+|.|.+|+||||+|+.+...+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999887553
No 273
>PRK14532 adenylate kinase; Provisional
Probab=96.65 E-value=0.0016 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.+.|++|+||||+|+.+..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6689999999999999998755
No 274
>PLN02348 phosphoribulokinase
Probab=96.64 E-value=0.0024 Score=52.28 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+...+|+|.|.+|+||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999997753
No 275
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0046 Score=53.36 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=37.5
Q ss_pred CCccchHHHHHHHHHHhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----------SAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
+++=|.++.+.++...+... -...+=|-.||+||+|||++|+++++..+.+|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 34555888888776543211 13456777899999999999999999766655
No 276
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.64 E-value=0.0074 Score=44.69 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=25.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
++..|.|++|+||||+...+...+...=...+++.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 56778999999999999998886655433344443
No 277
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.64 E-value=0.0018 Score=45.90 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++.|.|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999988763
No 278
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.63 E-value=0.0058 Score=48.14 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.7
Q ss_pred CCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 65 GSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 65 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
......+|+|.|++|+|||||+..+.....
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344578999999999999999999877543
No 279
>PRK09087 hypothetical protein; Validated
Probab=96.62 E-value=0.0016 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-+.+.|||+.|+|||+|++.++...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999988653
No 280
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0053 Score=48.61 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 56 KQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 56 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++...+.....+..+|||.|.||+||+||...+-..+..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~ 77 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE 77 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHH
Confidence 4455555555667889999999999999999988776543
No 281
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.62 E-value=0.02 Score=45.40 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=54.9
Q ss_pred CCccchHHH---HHHHHHHhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHhhccCC------cEEEEcccccccchhhH
Q 032234 46 KDLVGVERH---IKQTEPLLCT-GSAGVYILGIWGIGGIGKTTIADAVFNKISEHFE------GSYFAHNVRDAEETDRI 115 (144)
Q Consensus 46 ~~~vGr~~~---~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~------~~~~v~~~~~~s~~~~~ 115 (144)
+..+|-... ++.+..++.. .....+.+.|+|.+|.|||++++.+....-..++ +++.+. ....++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 346665443 4455556643 2344678999999999999999999885433232 455555 6677888
Q ss_pred HHHHHHHHHHhhCC
Q 032234 116 KDLQKQLLYELLND 129 (144)
Q Consensus 116 ~~l~~~ll~~l~~~ 129 (144)
..+...||..+.-.
T Consensus 110 ~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 110 RRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCcc
Confidence 88888888888753
No 282
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.61 E-value=0.0062 Score=50.72 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
...+-|||+.|+|||+|+.++++.+.......+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR 176 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence 456789999999999999999998765444455554
No 283
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.61 E-value=0.0031 Score=45.11 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
+++|+|+.|+|||||+..+...+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999976544
No 284
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.61 E-value=0.0039 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
++.+.|++|+||||++..+...+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999988876543
No 285
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.61 E-value=0.0035 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++.++|++|+||||++..+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 569999999999999999998886643
No 286
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.60 E-value=0.0065 Score=45.58 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=25.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.-.++.|.|.+|+|||||+..+.......-+..+|++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468899999999999999876553222334555554
No 287
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.60 E-value=0.0021 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|.+.|++|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 467889999999999999998765
No 288
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.60 E-value=0.0022 Score=46.56 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.6
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
|-|.|.+|+|||||...+.+.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 57899999999999999998764
No 289
>PRK10867 signal recognition particle protein; Provisional
Probab=96.59 E-value=0.019 Score=47.69 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..+|.++|++|+||||.+..++..+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 6789999999999999888777654433
No 290
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.012 Score=48.81 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999987643
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.58 E-value=0.0096 Score=44.93 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=29.5
Q ss_pred HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 58 TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 58 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
|-.+|...-..-.++.|+|.+|+|||+|+..+......+=..++|+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 33344323334568889999999999999988553222233445554
No 292
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.58 E-value=0.0022 Score=47.99 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..+||+.|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998866
No 293
>PRK08356 hypothetical protein; Provisional
Probab=96.57 E-value=0.0021 Score=47.37 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVF 90 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~ 90 (144)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 294
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.57 E-value=0.0047 Score=44.49 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=23.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999876544
No 295
>PRK14531 adenylate kinase; Provisional
Probab=96.57 E-value=0.0025 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|.+.|++|+||||+++.+....
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998865
No 296
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.56 E-value=0.01 Score=47.05 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.-.++-|+|++|+|||+++..++-.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3567889999999999999887654
No 297
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.55 E-value=0.0043 Score=39.24 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
++.+.|.+|+||||++..+...+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999987654
No 298
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.55 E-value=0.0035 Score=48.42 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.|.|+|-||+||||++..++..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 468899999999999999887754
No 299
>PHA02244 ATPase-like protein
Probab=96.55 E-value=0.0028 Score=51.63 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
-+-++|++|+|||+||++++......|
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pf 147 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDF 147 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356799999999999999998765443
No 300
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.55 E-value=0.0019 Score=44.31 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|..|+|||||.+.++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 478999999999999999987754
No 301
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.54 E-value=0.0066 Score=48.63 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 48 LVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 48 ~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
++=..+....+..++.. -+.|.+.|++|+||||+|+.++..+...
T Consensus 47 y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred ccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 33333344445555532 2358899999999999999998865443
No 302
>PRK06761 hypothetical protein; Provisional
Probab=96.54 E-value=0.0035 Score=49.22 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 478899999999999999999987543
No 303
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.54 E-value=0.0064 Score=54.41 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCccchHHHHHHHHHHhhcC-----CC--CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----SA--GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----~~--~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++|.+..++.+...+... +. ....+.++|++|+|||++|+.++..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 46899999999887766431 11 2456789999999999999999987643
No 304
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0087 Score=52.88 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=56.7
Q ss_pred CCccchHHHHHHHHHHhhcCC-CCeEEEEEEccCCCchHHHHHHHHHHhhc-c-----CCcEEEEccccccc----chhh
Q 032234 46 KDLVGVERHIKQTEPLLCTGS-AGVYILGIWGIGGIGKTTIADAVFNKISE-H-----FEGSYFAHNVRDAE----ETDR 114 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~-----f~~~~~v~~~~~~s----~~~~ 114 (144)
..++||+.+++.+.+.|.... +++ .++|.+|+|||+++.-++.++-. + -+..++.-++..+- -.-.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP---vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP---VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC---eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 458999999999999886432 233 35699999999999999987633 2 23445554443331 1446
Q ss_pred HHHHHHHHHHHhhCCCC
Q 032234 115 IKDLQKQLLYELLNDRN 131 (144)
Q Consensus 115 ~~~l~~~ll~~l~~~~~ 131 (144)
++.-++.+++.+....+
T Consensus 247 FEeRlk~vl~ev~~~~~ 263 (786)
T COG0542 247 FEERLKAVLKEVEKSKN 263 (786)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 67777778888776655
No 305
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.53 E-value=0.0019 Score=46.94 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
+|+|.|+.|+||||++..+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 306
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.53 E-value=0.0095 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|+.|+||||+++.+.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998754
No 307
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.53 E-value=0.0026 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++.|+|+.|+|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3688999999999999999998654
No 308
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.52 E-value=0.0022 Score=47.22 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..+|.|.|++|+|||||++.+....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999998754
No 309
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.52 E-value=0.0073 Score=48.83 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=42.7
Q ss_pred CCccchHHHHHHHHHHhhcC----CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCTG----SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~----~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++|.++.++++++.+... ...-+++-+.|+.|.|||||+..+.+.+..+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 47999999999999887533 2346899999999999999999998877665
No 310
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.52 E-value=0.0023 Score=45.06 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.4
Q ss_pred EEccCCCchHHHHHHHHHHh
Q 032234 74 IWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 74 I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.|+||+||||+|..++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 311
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0041 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.+.|+.|+||+||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 577899999999999999999976
No 312
>PRK01184 hypothetical protein; Provisional
Probab=96.50 E-value=0.0023 Score=46.45 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=16.8
Q ss_pred EEEEEEccCCCchHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADA 88 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~ 88 (144)
.+|+++|++|+||||+++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4789999999999999873
No 313
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.50 E-value=0.0077 Score=45.75 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=23.7
Q ss_pred HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHH
Q 032234 58 TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 58 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
|-++|...-..-.++.|.|.+|+|||+||..+..
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~ 43 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLW 43 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3344433333456888999999999999987544
No 314
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.50 E-value=0.0045 Score=44.77 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=24.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.++++|+|+.++|||||...+...++.+-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 36899999999999999999988665543
No 315
>PRK13695 putative NTPase; Provisional
Probab=96.49 E-value=0.0043 Score=44.72 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+.|.|.+|+|||||+..+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999887654
No 316
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.49 E-value=0.0034 Score=49.33 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=26.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCCc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFEG 99 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 99 (144)
...+|.++||+|+||||..+.++..+...+.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46688889999999999999998877665543
No 317
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.49 E-value=0.0053 Score=49.40 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCccchHHHHHHHH-HHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTE-PLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~-~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|.+..+..+. .++ ++...-+.|.|..|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~---~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI---DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhc---CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 56899998887764 344 2334567799999999999999998743
No 318
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.49 E-value=0.005 Score=49.03 Aligned_cols=52 Identities=29% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEE
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSY 101 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~ 101 (144)
..++|.++.+..+...+... ..+-+.|++|+|||+||+.+...+...|-...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 34888777776654433222 35668999999999999999998765554433
No 319
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.49 E-value=0.0024 Score=44.50 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.7
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.++|.+|+|||||...+.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998876
No 320
>PRK10536 hypothetical protein; Provisional
Probab=96.48 E-value=0.0099 Score=46.21 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=36.9
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH-h-hccCCcEEE
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK-I-SEHFEGSYF 102 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~-~-~~~f~~~~~ 102 (144)
..+.++......+..++.. ..++.+.|++|+|||+||.++... + ...|...+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3466777767666666642 248889999999999999998874 4 333444433
No 321
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.48 E-value=0.0043 Score=44.00 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
++++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999988765
No 322
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.48 E-value=0.0052 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=19.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-.++-|.|.+|+||||||..+...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999999999876543
No 323
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.48 E-value=0.0021 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.-|.++|++|+|||||+..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 46789999999999999998874
No 324
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.47 E-value=0.0061 Score=45.76 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=26.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH-h-hccCCcEEEEcccc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK-I-SEHFEGSYFAHNVR 107 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~-~-~~~f~~~~~v~~~~ 107 (144)
..++.+.|++|+|||.||.+..-+ + ...|+..+++...-
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 458889999999999999987764 3 35688888876543
No 325
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.47 E-value=0.0027 Score=48.41 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.|.|++|+||||+|+.+..+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998865
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.47 E-value=0.014 Score=45.98 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=27.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc------CCcEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH------FEGSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~~~~~v~ 104 (144)
.-.++-|+|++|+|||||+..++-..... -...+|+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 35678899999999999999887653211 12677776
No 327
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.45 E-value=0.005 Score=49.92 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=25.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
+..+|+|+|..|+|||||+..+...+...
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 35689999999999999999999988766
No 328
>PLN02796 D-glycerate 3-kinase
Probab=96.45 E-value=0.0034 Score=50.62 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+|+|.|..|+|||||++.+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4678999999999999999999987643
No 329
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.45 E-value=0.011 Score=50.07 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=37.5
Q ss_pred CCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 45 NKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...++|....++.+.+.+..-...-..|-|+|..|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 3578999988888877664332333455699999999999999999864
No 330
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0021 Score=55.28 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..=|-+||++|+|||-||++++|..+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc
Confidence 44566899999999999999998543
No 331
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.44 E-value=0.0087 Score=47.87 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=25.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
.-+++-|+|++|+||||||..+.......-..++|+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yI 89 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFI 89 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 346888999999999999988766543333344455
No 332
>PRK02496 adk adenylate kinase; Provisional
Probab=96.42 E-value=0.0031 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+.|.|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998754
No 333
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.42 E-value=0.0029 Score=47.10 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.|.|++|+||||+|..+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999998754
No 334
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.42 E-value=0.0088 Score=47.91 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=26.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.-+++-|+|++|+||||||..++-.....-...+|+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3467789999999999999987765443334555554
No 335
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.41 E-value=0.0079 Score=44.71 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++|.|+.|+|||||.+.+.+.+...
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~ 28 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQK 28 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 468999999999999999999876543
No 336
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.41 E-value=0.0028 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.++...
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 478999999999999999998743
No 337
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.41 E-value=0.0016 Score=45.26 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 50 GVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 50 Gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.-..++.+.+-+..-...-..|-|+|..|+||+++|+.++...
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 44444555544332211223455789999999999999999853
No 338
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.41 E-value=0.0053 Score=47.92 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
++|.|+|.||+||||+|+.+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 578899999999999999999976553
No 339
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.40 E-value=0.0053 Score=44.89 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-..+.|.|+.|+||||+.+.+...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999988754
No 340
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.38 E-value=0.0032 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37789999999999999998765
No 341
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.38 E-value=0.0035 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
++|.|.|-||+||||++..+...+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 468899999999999988877754
No 342
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.37 E-value=0.0031 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||++.++...
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 588999999999999999998743
No 343
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.37 E-value=0.0081 Score=53.81 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=37.5
Q ss_pred CCccchHHHHHHHHHHhhc-----C--CCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCT-----G--SAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|.+..++.+.+.+.. . +....++.++|++|+|||.||+.+...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999888776532 1 12245788999999999999999988753
No 344
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.37 E-value=0.0064 Score=51.25 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=33.7
Q ss_pred CCccchHHHHHHHHHHhh---c-----CCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLC---T-----GSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~---~-----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++-|.+..++.+..... . .-...+-|-++|++|+|||.+|+++.+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 467788776665543211 0 112346678999999999999999998654
No 345
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.36 E-value=0.0088 Score=46.05 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 55 IKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 55 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+.+.++|...-.....+.|.|..|+||||++..+.+.+..+
T Consensus 113 ~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 113 PEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 344555554332345788999999999999999998865444
No 346
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.36 E-value=0.0036 Score=42.27 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVF 90 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~ 90 (144)
..+.|.|+.|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999976
No 347
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.35 E-value=0.006 Score=47.29 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.|+|+|-||+||||++..+...+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La 26 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALA 26 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4788899999999999998877543
No 348
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.34 E-value=0.0033 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+....
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998743
No 349
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.34 E-value=0.004 Score=47.01 Aligned_cols=25 Identities=44% Similarity=0.623 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|+|.|+.|+||||+++.+..++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987654
No 350
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.32 E-value=0.0033 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-++.|+|.|..|+|||||+..+....
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999998754
No 351
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.31 E-value=0.004 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.+.++|++|+||+||+..+....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 578899999999999999998864
No 352
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.31 E-value=0.015 Score=48.52 Aligned_cols=27 Identities=37% Similarity=0.428 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..-+-|||..|+|||+|+.++++.+..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~ 167 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES 167 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH
Confidence 456789999999999999999997654
No 353
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.31 E-value=0.0033 Score=42.08 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~ 91 (144)
|+|.|++|+|||||...+.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999997
No 354
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.31 E-value=0.0036 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998874
No 355
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.30 E-value=0.0079 Score=41.00 Aligned_cols=24 Identities=46% Similarity=0.688 Sum_probs=20.7
Q ss_pred EEEEccCCCchHHHHHHHHHHhhc
Q 032234 72 LGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
|.+.|.||+||||++..+...+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~ 25 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE 25 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999886543
No 356
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.30 E-value=0.0031 Score=44.73 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...++|+|++|+|||||...+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 357
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.30 E-value=0.0083 Score=43.58 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++.+.|++|+||||+|+.+...+.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 358
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.0036 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-.++|+|+.|+|||||.+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999987
No 359
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.28 E-value=0.0038 Score=43.76 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.5
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.|+|.+|+|||||...+.+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 367899999999999998876
No 360
>PRK07429 phosphoribulokinase; Provisional
Probab=96.28 E-value=0.0079 Score=48.19 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=25.1
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+.+|+|.|..|+||||+++.+...+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~ 34 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGE 34 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhcc
Confidence 45679999999999999999999987653
No 361
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.28 E-value=0.0059 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|+|.|.+|+||||++..+...+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999887654
No 362
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.27 E-value=0.0049 Score=49.18 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=35.6
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..++|....++.+.+.+..-...-.-|-|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46889888888877665433333345678999999999999999874
No 363
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.27 E-value=0.0055 Score=48.22 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=24.1
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.+.+++.+.|-||+||||++..+...+.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La 31 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMA 31 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHH
Confidence 45679999999999999999988777443
No 364
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.27 E-value=0.0038 Score=49.48 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.-..|.++|++|+||||+++.+...+..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~ 159 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGV 159 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999887644
No 365
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.27 E-value=0.0079 Score=46.02 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++|.|.|-||+||||++..+...+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La 26 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALA 26 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 4678889999999999998887553
No 366
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.26 E-value=0.012 Score=44.05 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=24.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHH-HhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN-KISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~-~~~~~f~~~~~v~ 104 (144)
-.++.|.|.+|+|||+|+..+.. .....=+.++|++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 45888999999999999987554 3333134555665
No 367
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0041 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999863
No 368
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.004 Score=46.11 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 369
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.004 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+-|-|.|-||+||||++..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3467799999999999999998743
No 370
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0039 Score=47.04 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.+....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998743
No 371
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0062 Score=50.46 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=28.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccchhhHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEETDRIKD 117 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~~~~~~~ 117 (144)
=--++||||+|||++.-+++|.+ +.-++.-++.++....++.+
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~dLr~ 279 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSDLRH 279 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHHHHH
Confidence 34579999999999999999855 33334444444554444443
No 372
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.25 E-value=0.004 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||++.+....
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999998743
No 373
>PRK14528 adenylate kinase; Provisional
Probab=96.25 E-value=0.0048 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999997654
No 374
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0039 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 375
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.004 Score=49.71 Aligned_cols=29 Identities=34% Similarity=0.402 Sum_probs=24.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
+..++|||++|.|||-+|++++..+..+|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56789999999999999999988665444
No 376
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.25 E-value=0.0039 Score=43.16 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~ 91 (144)
|.|+|++|+|||||...+.+
T Consensus 2 i~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999998875
No 377
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.24 E-value=0.0046 Score=42.66 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...|++.|.+|+|||||...+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999998866
No 378
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.24 E-value=0.007 Score=45.09 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=29.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
...|++-|++|+|||||.......++..|...+-.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 57899999999999999999999988777655433
No 379
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.24 E-value=0.004 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999864
No 380
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.23 E-value=0.0036 Score=44.12 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-|.++|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999988763
No 381
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.23 E-value=0.0041 Score=46.33 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 382
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.23 E-value=0.0033 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|+|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998774
No 383
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.22 E-value=0.0042 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 384
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.22 E-value=0.0036 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+++|.|..|+|||||++.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 479999999999999999987654
No 385
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0042 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 386
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.22 E-value=0.0042 Score=43.37 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.7
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999988763
No 387
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.21 E-value=0.0044 Score=42.48 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|.++|++|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999998773
No 388
>PRK04328 hypothetical protein; Provisional
Probab=96.21 E-value=0.013 Score=45.02 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=26.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.-.++-|.|.+|+|||+|+..+.......-+..+|++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3467889999999999999876554323345666665
No 389
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.21 E-value=0.0043 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+....
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 588999999999999999998765
No 390
>PRK09354 recA recombinase A; Provisional
Probab=96.20 E-value=0.022 Score=46.13 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=30.5
Q ss_pred HHHHHhh-cCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 57 QTEPLLC-TGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 57 ~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.|-.+|. ..-..-+++-|+|++|+||||||..+.-.....-...+|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3444453 22233467889999999999999987664433334445554
No 391
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.20 E-value=0.0081 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=18.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-.++.|.|.+|+||||||..+..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999755444
No 392
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.20 E-value=0.013 Score=42.63 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=29.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh-ccCCcEEEEcccccccc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS-EHFEGSYFAHNVRDAEE 111 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~v~~~~~~s~ 111 (144)
...+-+.|+.|+|||.||+.+.+.+. ......+-+ ++.+.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhcccc
Confidence 35677899999999999999999876 444444433 4444444
No 393
>PRK12338 hypothetical protein; Provisional
Probab=96.19 E-value=0.0051 Score=49.10 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..+|.|.|.+|+||||+|..+..++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4688999999999999999998864
No 394
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.01 Score=46.49 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=31.9
Q ss_pred CccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 47 DLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
++=|.+-+++++...... .-+..+-+-++|++|+|||.||+++++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 455677666666543321 1134566778999999999999999884
No 395
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.18 E-value=0.046 Score=44.96 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=32.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh-ccCCcEEEEcccccccchhhHHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS-EHFEGSYFAHNVRDAEETDRIKDLQKQLLYEL 126 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~v~~~~~~s~~~~~~~l~~~ll~~l 126 (144)
.++.|-|.+|+|||++|..+..... .+-..++|++ -......+...++...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 4777889999999999999886543 2223444543 2234445555554443
No 396
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0048 Score=46.73 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+.|.+.|.+|+||||+|+.+...++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46778999999999999999886544
No 397
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0046 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 398
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.17 E-value=0.0041 Score=46.13 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.+....
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999997743
No 399
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.17 E-value=0.0047 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.++...
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998743
No 400
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0043 Score=51.96 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=35.5
Q ss_pred CCccchHHHHHHHHHHh---hcC--------CCCeEEEEEEccCCCchHHHHHHHHHHhhccCC
Q 032234 46 KDLVGVERHIKQTEPLL---CTG--------SAGVYILGIWGIGGIGKTTIADAVFNKISEHFE 98 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l---~~~--------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 98 (144)
.++.|.+...+.+...+ ... -.....+-++|++|+|||+||+++++....+|-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi 305 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEE
Confidence 34566666665554432 111 134557889999999999999999996655553
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.16 E-value=0.011 Score=45.42 Aligned_cols=23 Identities=43% Similarity=0.758 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|+|+|-||+||||+|-.+.-++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 58999999999999999965554
No 402
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.023 Score=45.46 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCccchHHHHHHHHHHhh----------cCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccc-hhh
Q 032234 46 KDLVGVERHIKQTEPLLC----------TGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEE-TDR 114 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~----------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~-~~~ 114 (144)
+++-|.+..++.|..... ......+-|-++|++|+||+.||++++-.....|..+.--. + +|. --.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD-L--vSKWmGE 209 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD-L--VSKWMGE 209 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH-H--HHHHhcc
Confidence 578899988888765321 11223677888999999999999999987655543321110 0 111 112
Q ss_pred HHHHHHHHHHHhhCCCC
Q 032234 115 IKDLQKQLLYELLNDRN 131 (144)
Q Consensus 115 ~~~l~~~ll~~l~~~~~ 131 (144)
.+.|.++++.--...+.
T Consensus 210 SEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 210 SEKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 35667777766655544
No 403
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.0076 Score=49.15 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
-.++.++|+.|+||||++..+.......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999998865433
No 404
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.16 E-value=0.0044 Score=47.88 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
++|+|+|-||+||||++..+...+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468888999999999998877744
No 405
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.16 E-value=0.0047 Score=41.99 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-|.++|.+|+|||||...+...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988773
No 406
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.15 E-value=0.0049 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999884
No 407
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0047 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999874
No 408
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0054 Score=45.57 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.. .+++|.|+.|+|||||++.+....
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 35 899999999999999999998743
No 409
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.13 E-value=0.0049 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999864
No 410
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.13 E-value=0.005 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999874
No 411
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.13 E-value=0.0049 Score=45.52 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.++...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 488999999999999999998843
No 412
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.13 E-value=0.005 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.++..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999874
No 413
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0044 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
+++|.|+.|+|||||.+.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8899999999999999999874
No 414
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.13 E-value=0.0048 Score=46.09 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999874
No 415
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.12 E-value=0.0048 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999998764
No 416
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=96.12 E-value=0.0098 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++|+|.|-||+||||+|..+...+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5788889999999999998777554
No 417
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0051 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 418
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.12 E-value=0.0052 Score=42.61 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.+.|.+|+|||||...+.+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 367899999999999988876
No 419
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.11 E-value=0.0052 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999874
No 420
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.11 E-value=0.0047 Score=43.10 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~ 91 (144)
|.++|.+|+|||||...+.+
T Consensus 3 v~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999876
No 421
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.11 E-value=0.0059 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..|+|+|+.|+||||+++.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998775
No 422
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.10 E-value=0.0053 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 423
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.10 E-value=0.0051 Score=46.73 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=25.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
=.++.|+|+.|+|||||.+.+.. +...=...+|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-CcCCCCceEEEC
Confidence 35889999999999999998743 333334566665
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.10 E-value=0.058 Score=48.06 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=53.1
Q ss_pred CCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccc-hhhHHHHHHHH
Q 032234 44 HNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEE-TDRIKDLQKQL 122 (144)
Q Consensus 44 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~-~~~~~~l~~~l 122 (144)
.+.+.+-|....+.+. ...+.+++.|.-|+|-|||||+-.... ....=..+.|++ ..+ +.+...+.+.+
T Consensus 17 ~~~~~v~R~rL~~~L~-----~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~~yL 86 (894)
T COG2909 17 RPDNYVVRPRLLDRLR-----RANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFLSYL 86 (894)
T ss_pred CcccccccHHHHHHHh-----cCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHHHHH
Confidence 3466777765444433 344689999999999999999988877 334456789998 543 45667777777
Q ss_pred HHHhhC
Q 032234 123 LYELLN 128 (144)
Q Consensus 123 l~~l~~ 128 (144)
+..|..
T Consensus 87 i~al~~ 92 (894)
T COG2909 87 IAALQQ 92 (894)
T ss_pred HHHHHH
Confidence 776664
No 425
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0053 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 426
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0059 Score=51.98 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=32.4
Q ss_pred CCccchHHHHHHHHH---HhhcCC-------CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 46 KDLVGVERHIKQTEP---LLCTGS-------AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~---~l~~~~-------~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.++-|.++.+++|++ +|.... .-++=|-++|++|+|||-||++++.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG 359 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG 359 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc
Confidence 457788877766655 443211 1145677899999999999999865
No 427
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.013 Score=43.20 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=25.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcE
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGS 100 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~ 100 (144)
..+|=+.|++|.||||+|.+++.++...-...
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 45677789999999999999999876554333
No 428
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0053 Score=46.18 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+....
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999998743
No 429
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.09 E-value=0.02 Score=43.08 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=25.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
.++.|.|.+|+|||+++..+....... =...+|++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 577889999999999999876654332 34555554
No 430
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.09 E-value=0.015 Score=47.44 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 57 QTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 57 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.+..+|...-..-.++.|.|.+|+|||||+..++......-...+|++
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444322223458889999999999999988876554434555654
No 431
>PRK13973 thymidylate kinase; Provisional
Probab=96.09 E-value=0.022 Score=42.54 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..|.|-|+.|+||||+++.++..+...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~ 30 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAA 30 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 478889999999999999999987543
No 432
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.08 E-value=0.005 Score=42.66 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=18.0
Q ss_pred EEEEccCCCchHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVF 90 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~ 90 (144)
|+++|..|+|||||...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999998
No 433
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.08 E-value=0.0097 Score=47.82 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=26.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEE
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYF 102 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~ 102 (144)
-..+.|.|+.|+||||+...+.+.+..+...+++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ 155 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHII 155 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEE
Confidence 3678999999999999999988876544444433
No 434
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.07 E-value=0.0042 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...+-|||.+|+||||+|+.+.+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 35688999999999999998854
No 435
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.0055 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 436
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.13 Score=43.31 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=45.9
Q ss_pred CCCccchHHHHHHHHHHhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHhhccCC--cEEEEc
Q 032234 45 NKDLVGVERHIKQTEPLLCT--GSAGVYILGIWGIGGIGKTTIADAVFNKISEHFE--GSYFAH 104 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~--~~~~v~ 104 (144)
+..++||+.+++.+..|+.. +......+-|.|.+|.|||.+...++.+...... ..+++.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in 212 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN 212 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe
Confidence 36799999999999988753 3345677888999999999999999997655432 234554
No 437
>PLN02165 adenylate isopentenyltransferase
Probab=96.06 E-value=0.0059 Score=49.03 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.++.|+|+.|+||||||..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 44899999999999999999988754
No 438
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.05 E-value=0.0067 Score=46.61 Aligned_cols=23 Identities=39% Similarity=0.715 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|++.|-||+||||++..+...+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~L 24 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAF 24 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHH
Confidence 47788999999999988876643
No 439
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.05 E-value=0.01 Score=46.95 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+.|.|+.|+||||++.++.+.+.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4667999999999999999988653
No 440
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.021 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+++++|++|+||||++..+.....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999988877543
No 441
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.05 E-value=0.019 Score=46.17 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=28.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh--hccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI--SEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~--~~~f~~~~~v~ 104 (144)
.++.|.|.+|+|||.||-.++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 478899999999999999999988 55566666665
No 442
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.04 E-value=0.0055 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|.|-|+.|+||||++..+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998863
No 443
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.0057 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.++...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998743
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.04 E-value=0.0058 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+..-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 488999999999999999998743
No 445
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.04 E-value=0.0057 Score=46.87 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.+....
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 588999999999999999998754
No 446
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.04 E-value=0.013 Score=46.97 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=31.5
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 48 LVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 48 ~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
++|....++.+.+.+..-...-.-|-|+|..|+||+++|+.+++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 3566656666655443322233456799999999999999999854
No 447
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.03 E-value=0.01 Score=43.55 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+....|+|.|.+|+|||||...+.+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 345678999999999999999988874
No 448
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.03 E-value=0.0053 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 58899999999999999999884
No 449
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.03 E-value=0.0059 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999874
No 450
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.03 E-value=0.014 Score=48.55 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..-+|||.|..|+|||||+..+...+.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999976553
No 451
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.02 E-value=0.0059 Score=42.71 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.2
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~ 91 (144)
|.++|.+|+|||||...+.+
T Consensus 3 i~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999876
No 452
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.02 E-value=0.0059 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 453
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.02 E-value=0.006 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999874
No 454
>PRK14526 adenylate kinase; Provisional
Probab=96.02 E-value=0.0064 Score=45.72 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 032234 72 LGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
|.|+|++|+||||++..+....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999988654
No 455
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.02 E-value=0.006 Score=42.29 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.2
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~ 91 (144)
|.++|.+|+|||||...+.+
T Consensus 3 i~i~G~~~~GKStli~~l~~ 22 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVE 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999988876
No 456
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.02 E-value=0.0058 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|.|+.|+|||||.+.++....
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999988543
No 457
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.02 E-value=0.022 Score=44.22 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 54 HIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+.+..++. ..-.++.|.|+.|+||||+...+.+.+.
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3444555553 2235789999999999999998877653
No 458
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.01 E-value=0.0058 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999875
No 459
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.01 E-value=0.012 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|.|.|-||+||||++..+...+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la 25 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALA 25 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Confidence 578889999999999988777543
No 460
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.01 E-value=0.0061 Score=45.96 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+....
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999998743
No 461
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.00 E-value=0.0085 Score=45.39 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+|.|.|++|+||||+|+.+.....-
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~ 30 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGF 30 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999887643
No 462
>PRK05973 replicative DNA helicase; Provisional
Probab=96.00 E-value=0.012 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.038 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-.++.|.|.+|+|||+++..+...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 357788999999999999876554
No 463
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0075 Score=53.06 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCccchHHHHHHHHHHhhc-CC---------CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCT-GS---------AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-~~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.|.++.+++|.++... .+ .-++=+-++|++|+|||-||++++-..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 5788998877776554321 11 125666789999999999999988754
No 464
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.00 E-value=0.0056 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 57899999999999999999874
No 465
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.00 E-value=0.0063 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+....
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998743
No 466
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.99 E-value=0.025 Score=43.39 Aligned_cols=35 Identities=14% Similarity=-0.031 Sum_probs=26.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
.++.|.|.+|+||||++..+....... =..++|++
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 477789999999999999887765333 34566765
No 467
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.99 E-value=0.0061 Score=43.26 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.4
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
+-|.++|..|+|||||++.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 3577899999999999999877
No 468
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.026 Score=49.88 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=38.5
Q ss_pred HHHHhhcc-cccCCCC-CCccchHHHHHHHHHHhhcC-------C---CCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 31 NEVLKRLE-ETFQSHN-KDLVGVERHIKQTEPLLCTG-------S---AGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 31 ~~v~~~~~-~~~~~~~-~~~vGr~~~~~~l~~~l~~~-------~---~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
++.+..+. |+.|... +++=|.++.+.++.+-+... + ..+.=|-+||++|+|||-||++++-.
T Consensus 655 ~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736|consen 655 KEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred HhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh
Confidence 33344443 3444444 45556887777766544210 1 12445678999999999999998763
No 469
>PF13479 AAA_24: AAA domain
Probab=95.97 E-value=0.0042 Score=46.52 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.9
Q ss_pred EEEEEEccCCCchHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAV 89 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v 89 (144)
..+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999887
No 470
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.97 E-value=0.0067 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+....
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 588999999999999999998743
No 471
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0064 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||++.+....
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 578999999999999999998754
No 472
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.97 E-value=0.007 Score=43.62 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 478999999999999999998743
No 473
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.96 E-value=0.0065 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+++|+|+.|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5789999999999999998864
No 474
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.96 E-value=0.0079 Score=46.83 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.++|++|..|+||||+++.+..-..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 35889999999999999999988543
No 475
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0067 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 476
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.04 Score=47.04 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEcccccccchhhHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAHNVRDAEETDRIKDLQ 119 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~~~~~~s~~~~~~~l~ 119 (144)
.....+-+.|++|+|||+||-.++....-.|-..+--.++--.|+.-...++.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHH
Confidence 34666778999999999999988776544444444434443344443333333
No 477
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.94 E-value=0.0068 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|..|+|||||.+.++...
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 588999999999999999998743
No 478
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.94 E-value=0.0076 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|.++|.+|+|||||...+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999988873
No 479
>PRK10908 cell division protein FtsE; Provisional
Probab=95.93 E-value=0.0069 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999874
No 480
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.93 E-value=0.006 Score=42.55 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|.++|.+|+|||||...+.+.
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 678999999999999998774
No 481
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.0069 Score=51.26 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=43.4
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++.+|..+ ++++|.+.-...|...+.... -.+-....|+-|+||||+|+.++..+
T Consensus 6 L~rKyRP~~F---~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 6 LARKYRPKTF---DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred HHHHhCcccH---HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHh
Confidence 4556777777 788999998888888775322 23344567999999999999998865
No 482
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.93 E-value=0.028 Score=49.13 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|....++.+.+.+..-...-..|-|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 468999888887765543222233466799999999999999999854
No 483
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0071 Score=44.36 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999863
No 484
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.92 E-value=0.065 Score=38.95 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+.+-++|+.|+||||+|..+...+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 36788999999999999999988764
No 485
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.007 Score=45.95 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||++.+....
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998743
No 486
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.92 E-value=0.0071 Score=44.98 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|..|+|||||.+.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 487
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.92 E-value=0.007 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999874
No 488
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.92 E-value=0.0069 Score=42.66 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||+..+..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4578899999999999988765
No 489
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.91 E-value=0.0072 Score=44.65 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999874
No 490
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.0076 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.-+++-++|++|.||||||..++.+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh
Confidence 3578889999999999999998874
No 491
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0071 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+...
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999864
No 492
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.91 E-value=0.0071 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 493
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.91 E-value=0.013 Score=47.60 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++|+|+|..|+|||||...+...++..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~ 232 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIAR 232 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999876543
No 494
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.91 E-value=0.0073 Score=42.13 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.1
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.|+|.+|+|||||+..+..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999987665
No 495
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0097 Score=43.52 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5788999999999999998877655
No 496
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.90 E-value=0.018 Score=48.67 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 45 NKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...++|....++.+.+.+..-...-.-|-|+|..|+||+++|+.+++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 46799999888888776654333445667999999999999999999643
No 497
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.90 E-value=0.0073 Score=42.79 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.++|.+|+|||||...+.+
T Consensus 3 ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999998876
No 498
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.90 E-value=0.0065 Score=43.87 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...+.+.|++|+|||||...+.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34559999999999999999876
No 499
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.89 E-value=0.019 Score=40.59 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHhhcC-CCCeEEEEEEccCCCchHHHHHHHHH
Q 032234 49 VGVERHIKQTEPLLCTG-SAGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 49 vGr~~~~~~l~~~l~~~-~~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.|.+..++.+..++... ......++++|++|+|||||...+..
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 45555555555554321 12234678999999999999999977
No 500
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.89 E-value=0.0074 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.++...
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 588999999999999999998743
Done!