Query 032234
Match_columns 144
No_of_seqs 174 out of 1397
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 18:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.5 2.9E-14 9.8E-19 118.6 9.4 77 49-129 131-214 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.3 5.5E-12 1.9E-16 111.4 9.9 85 41-129 119-209 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.2 3.4E-11 1.2E-15 100.1 8.3 64 41-104 119-186 (591)
4 1vt4_I APAF-1 related killer D 99.2 4.6E-11 1.6E-15 105.9 8.5 74 47-125 129-205 (1221)
5 1w5s_A Origin recognition comp 98.7 3.3E-08 1.1E-12 78.1 7.7 78 45-126 21-111 (412)
6 1jbk_A CLPB protein; beta barr 98.7 4.5E-08 1.5E-12 68.7 7.5 48 46-95 22-69 (195)
7 2qby_B CDC6 homolog 3, cell di 98.7 5.9E-08 2E-12 76.1 8.7 77 46-126 20-107 (384)
8 2v1u_A Cell division control p 98.7 7.2E-08 2.5E-12 75.2 8.1 50 46-95 19-70 (387)
9 2qen_A Walker-type ATPase; unk 98.6 7E-08 2.4E-12 74.3 7.7 57 39-104 5-61 (350)
10 2qby_A CDC6 homolog 1, cell di 98.6 4.3E-08 1.5E-12 76.4 6.5 60 45-104 19-83 (386)
11 1fnn_A CDC6P, cell division co 98.6 3.9E-07 1.3E-11 71.3 9.8 77 46-126 17-98 (389)
12 2fna_A Conserved hypothetical 98.6 2.6E-07 8.8E-12 71.2 8.6 57 39-104 6-62 (357)
13 2p65_A Hypothetical protein PF 98.4 3.3E-07 1.1E-11 64.2 6.0 48 46-95 22-69 (187)
14 2chg_A Replication factor C sm 98.4 3.9E-07 1.3E-11 65.2 6.0 49 46-96 17-65 (226)
15 1njg_A DNA polymerase III subu 98.4 6.7E-07 2.3E-11 64.6 6.7 49 46-95 23-71 (250)
16 3d8b_A Fidgetin-like protein 1 98.3 6.5E-07 2.2E-11 70.6 5.4 71 22-95 63-143 (357)
17 3pfi_A Holliday junction ATP-d 98.3 7.4E-07 2.5E-11 69.0 4.5 62 32-96 18-82 (338)
18 1iqp_A RFCS; clamp loader, ext 98.2 2.4E-06 8.2E-11 65.2 7.0 58 33-95 15-72 (327)
19 3te6_A Regulatory protein SIR3 98.2 4E-06 1.4E-10 65.6 8.1 78 48-129 22-108 (318)
20 3b9p_A CG5977-PA, isoform A; A 98.2 2.1E-06 7.2E-11 65.3 5.9 52 45-96 20-81 (297)
21 1sxj_B Activator 1 37 kDa subu 98.2 3E-06 1E-10 64.6 6.2 48 46-95 21-68 (323)
22 1sxj_D Activator 1 41 kDa subu 98.1 2.5E-06 8.5E-11 66.0 5.2 57 33-94 27-83 (353)
23 3h4m_A Proteasome-activating n 98.1 2.6E-06 9E-11 64.3 4.9 53 44-96 15-78 (285)
24 3pvs_A Replication-associated 98.1 4.8E-06 1.6E-10 67.8 5.9 60 33-97 16-78 (447)
25 2chq_A Replication factor C sm 98.1 3.3E-06 1.1E-10 64.2 4.4 46 46-93 17-62 (319)
26 1sxj_A Activator 1 95 kDa subu 98.1 5.6E-06 1.9E-10 68.3 6.0 58 33-93 29-101 (516)
27 3n70_A Transport activator; si 98.0 2.8E-06 9.7E-11 58.5 3.6 47 47-93 2-48 (145)
28 1jr3_A DNA polymerase III subu 98.0 8.2E-06 2.8E-10 63.5 6.1 56 35-94 8-63 (373)
29 1hqc_A RUVB; extended AAA-ATPa 98.0 2.7E-06 9.2E-11 65.2 3.3 50 46-95 12-64 (324)
30 2qz4_A Paraplegin; AAA+, SPG7, 98.0 6.2E-06 2.1E-10 61.2 5.2 51 46-96 6-66 (262)
31 3u61_B DNA polymerase accessor 98.0 9.4E-06 3.2E-10 62.5 6.3 58 33-94 16-73 (324)
32 2w58_A DNAI, primosome compone 98.0 1.6E-05 5.3E-10 57.1 6.9 59 46-104 25-89 (202)
33 1sxj_E Activator 1 40 kDa subu 98.0 4.6E-06 1.6E-10 64.8 3.8 56 34-93 5-60 (354)
34 1in4_A RUVB, holliday junction 98.0 6.2E-06 2.1E-10 64.3 4.5 48 46-93 25-75 (334)
35 3cf0_A Transitional endoplasmi 98.0 1.2E-05 3.9E-10 61.9 5.8 49 46-94 15-74 (301)
36 1sxj_C Activator 1 40 kDa subu 97.9 8.7E-06 3E-10 63.3 5.1 56 33-93 15-70 (340)
37 3eie_A Vacuolar protein sortin 97.9 1.1E-05 3.8E-10 62.4 5.7 51 45-95 17-77 (322)
38 3pxg_A Negative regulator of g 97.9 8.8E-06 3E-10 66.4 5.3 47 46-94 180-226 (468)
39 3bos_A Putative DNA replicatio 97.9 3.1E-05 1.1E-09 56.2 7.6 48 46-95 28-78 (242)
40 3uk6_A RUVB-like 2; hexameric 97.9 1.7E-05 5.7E-10 61.9 5.9 50 46-95 44-96 (368)
41 2qp9_X Vacuolar protein sortin 97.9 1.2E-05 4.1E-10 63.3 4.9 50 46-95 51-110 (355)
42 3syl_A Protein CBBX; photosynt 97.8 1.4E-05 4.7E-10 60.9 4.5 48 47-94 32-92 (309)
43 1lv7_A FTSH; alpha/beta domain 97.8 2E-05 6.9E-10 58.7 5.3 50 46-95 12-71 (257)
44 1ofh_A ATP-dependent HSL prote 97.8 1.2E-05 4.3E-10 60.8 4.0 50 46-95 15-76 (310)
45 2r62_A Cell division protease 97.8 1.2E-05 4E-10 60.2 3.6 51 46-96 11-71 (268)
46 3ec2_A DNA replication protein 97.8 3E-05 1E-09 54.7 5.4 43 52-94 20-63 (180)
47 2zan_A Vacuolar protein sortin 97.8 1.4E-05 4.8E-10 64.8 3.7 48 46-93 134-191 (444)
48 3co5_A Putative two-component 97.8 4.8E-06 1.6E-10 57.3 0.5 47 46-92 4-50 (143)
49 1xwi_A SKD1 protein; VPS4B, AA 97.7 3.9E-05 1.3E-09 59.6 5.7 48 46-93 12-69 (322)
50 3vfd_A Spastin; ATPase, microt 97.7 3E-05 1E-09 61.5 5.1 50 46-95 115-174 (389)
51 3hws_A ATP-dependent CLP prote 97.7 3.1E-05 1.1E-09 60.8 5.1 48 47-94 16-76 (363)
52 3pxi_A Negative regulator of g 97.7 3.1E-05 1.1E-09 66.5 5.3 46 46-93 180-225 (758)
53 4b4t_L 26S protease subunit RP 97.7 5.1E-05 1.7E-09 61.8 6.2 50 46-95 181-241 (437)
54 4b4t_K 26S protease regulatory 97.7 4.8E-05 1.6E-09 61.7 6.0 52 46-97 172-234 (428)
55 1qvr_A CLPB protein; coiled co 97.7 1.5E-05 5.2E-10 69.4 3.1 47 46-94 170-216 (854)
56 4fcw_A Chaperone protein CLPB; 97.7 4.4E-05 1.5E-09 58.0 5.4 49 47-95 18-73 (311)
57 4b4t_M 26S protease regulatory 97.7 4.9E-05 1.7E-09 61.8 5.8 51 46-96 181-242 (434)
58 2bjv_A PSP operon transcriptio 97.7 3.4E-05 1.2E-09 57.7 4.6 49 46-94 6-54 (265)
59 1r6b_X CLPA protein; AAA+, N-t 97.7 6.8E-05 2.3E-09 64.3 6.5 82 46-129 186-277 (758)
60 4b4t_J 26S protease regulatory 97.6 5.4E-05 1.9E-09 61.0 5.3 50 46-95 148-208 (405)
61 1l8q_A Chromosomal replication 97.6 0.00013 4.5E-09 56.1 7.2 40 56-95 24-63 (324)
62 4b4t_H 26S protease regulatory 97.6 7.5E-05 2.6E-09 61.2 6.0 50 46-95 209-269 (467)
63 1d2n_A N-ethylmaleimide-sensit 97.6 8.5E-05 2.9E-09 55.8 5.7 51 46-96 33-91 (272)
64 2r44_A Uncharacterized protein 97.6 5.2E-05 1.8E-09 58.5 4.5 55 33-94 17-71 (331)
65 2c9o_A RUVB-like 1; hexameric 97.6 7.9E-05 2.7E-09 60.4 5.7 49 46-94 37-88 (456)
66 3hu3_A Transitional endoplasmi 97.6 5.3E-05 1.8E-09 62.3 4.3 50 46-95 204-264 (489)
67 1ixz_A ATP-dependent metallopr 97.5 5.7E-05 2E-09 56.1 3.8 49 46-94 16-74 (254)
68 1um8_A ATP-dependent CLP prote 97.5 0.0001 3.6E-09 57.9 5.3 27 69-95 72-98 (376)
69 1qhx_A CPT, protein (chloramph 97.5 5.4E-05 1.9E-09 53.0 3.1 25 70-94 4-28 (178)
70 3kb2_A SPBC2 prophage-derived 97.5 6.1E-05 2.1E-09 52.2 3.4 25 70-94 2-26 (173)
71 2z4s_A Chromosomal replication 97.5 0.00015 5.2E-09 58.7 6.2 29 69-97 130-158 (440)
72 1ojl_A Transcriptional regulat 97.5 6E-05 2.1E-09 58.1 3.6 47 46-92 2-48 (304)
73 1iy2_A ATP-dependent metallopr 97.5 0.0001 3.6E-09 55.6 4.8 50 45-94 39-98 (278)
74 4b4t_I 26S protease regulatory 97.5 0.00015 5E-09 59.0 5.8 51 46-96 182-243 (437)
75 3lw7_A Adenylate kinase relate 97.5 6.8E-05 2.3E-09 51.7 3.2 23 70-93 2-24 (179)
76 3t15_A Ribulose bisphosphate c 97.5 8.2E-05 2.8E-09 57.0 3.9 30 68-97 35-64 (293)
77 3c8u_A Fructokinase; YP_612366 97.5 0.00019 6.4E-09 52.0 5.6 28 67-94 20-47 (208)
78 3trf_A Shikimate kinase, SK; a 97.4 8.6E-05 3E-09 52.3 3.3 25 70-94 6-30 (185)
79 1rz3_A Hypothetical protein rb 97.4 0.00048 1.6E-08 49.6 7.2 44 51-94 3-47 (201)
80 2ce7_A Cell division protein F 97.4 0.00018 6.3E-09 59.0 5.5 51 46-96 16-76 (476)
81 3vaa_A Shikimate kinase, SK; s 97.4 9.6E-05 3.3E-09 53.1 3.4 27 69-95 25-51 (199)
82 2x8a_A Nuclear valosin-contain 97.4 0.00024 8E-09 54.0 5.7 49 46-94 10-69 (274)
83 1ypw_A Transitional endoplasmi 97.4 8.5E-05 2.9E-09 64.5 3.3 50 46-95 204-264 (806)
84 2qgz_A Helicase loader, putati 97.4 0.00039 1.3E-08 53.7 6.8 50 54-103 136-187 (308)
85 1nks_A Adenylate kinase; therm 97.4 0.00025 8.6E-09 49.8 5.1 26 70-95 2-27 (194)
86 1odf_A YGR205W, hypothetical 3 97.4 0.00034 1.2E-08 53.8 6.1 30 66-95 28-57 (290)
87 1kag_A SKI, shikimate kinase I 97.3 0.0001 3.4E-09 51.4 2.8 25 70-94 5-29 (173)
88 1zuh_A Shikimate kinase; alpha 97.3 0.00013 4.6E-09 50.7 3.4 28 68-95 6-33 (168)
89 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00027 9.3E-09 56.1 5.4 49 49-97 2-52 (359)
90 1ly1_A Polynucleotide kinase; 97.3 0.00016 5.4E-09 50.4 3.5 22 70-91 3-24 (181)
91 1zp6_A Hypothetical protein AT 97.3 0.00015 5E-09 51.3 3.4 24 69-92 9-32 (191)
92 1g8p_A Magnesium-chelatase 38 97.3 0.0002 6.8E-09 55.2 3.9 47 46-94 24-70 (350)
93 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.6E-09 50.3 3.8 26 69-94 5-30 (193)
94 1g41_A Heat shock protein HSLU 97.2 0.00027 9.1E-09 57.6 4.6 52 46-97 15-78 (444)
95 2jaq_A Deoxyguanosine kinase; 97.2 0.00019 6.5E-09 51.0 3.3 25 71-95 2-26 (205)
96 3iij_A Coilin-interacting nucl 97.2 0.00014 4.9E-09 51.1 2.6 25 69-93 11-35 (180)
97 1kht_A Adenylate kinase; phosp 97.2 0.00021 7.1E-09 50.2 3.4 25 70-94 4-28 (192)
98 1zu4_A FTSY; GTPase, signal re 97.2 0.0012 4.2E-08 51.3 8.0 28 68-95 104-131 (320)
99 1via_A Shikimate kinase; struc 97.2 0.0002 7E-09 50.1 3.2 24 71-94 6-29 (175)
100 1nn5_A Similar to deoxythymidy 97.2 0.0004 1.4E-08 49.8 4.7 29 69-97 9-37 (215)
101 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00032 1.1E-08 57.9 4.7 49 45-93 30-88 (499)
102 3cf2_A TER ATPase, transitiona 97.2 0.00021 7.1E-09 62.2 3.7 51 46-96 204-265 (806)
103 3uie_A Adenylyl-sulfate kinase 97.2 0.00028 9.4E-09 50.7 3.8 26 69-94 25-50 (200)
104 1knq_A Gluconate kinase; ALFA/ 97.2 0.00028 9.4E-09 49.3 3.6 25 69-93 8-32 (175)
105 2kjq_A DNAA-related protein; s 97.2 0.00038 1.3E-08 48.2 4.3 25 69-93 36-60 (149)
106 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.9E-09 51.3 3.0 26 69-94 18-43 (202)
107 2iyv_A Shikimate kinase, SK; t 97.2 0.00018 6E-09 50.7 2.6 24 71-94 4-27 (184)
108 2yvu_A Probable adenylyl-sulfa 97.2 0.00049 1.7E-08 48.6 5.0 27 69-95 13-39 (186)
109 2plr_A DTMP kinase, probable t 97.2 0.0005 1.7E-08 49.0 5.0 27 70-96 5-31 (213)
110 3cm0_A Adenylate kinase; ATP-b 97.2 0.00029 1E-08 49.5 3.6 24 70-93 5-28 (186)
111 1tev_A UMP-CMP kinase; ploop, 97.2 0.00031 1.1E-08 49.4 3.8 24 70-93 4-27 (196)
112 1kgd_A CASK, peripheral plasma 97.2 0.00025 8.4E-09 50.2 3.2 24 70-93 6-29 (180)
113 3tr0_A Guanylate kinase, GMP k 97.2 0.00026 8.9E-09 50.5 3.3 24 70-93 8-31 (205)
114 2c95_A Adenylate kinase 1; tra 97.2 0.00024 8.4E-09 50.2 3.2 26 69-94 9-34 (196)
115 2ze6_A Isopentenyl transferase 97.1 0.00029 9.9E-09 52.8 3.7 25 70-94 2-26 (253)
116 2z0h_A DTMP kinase, thymidylat 97.1 0.0011 3.8E-08 46.7 6.6 25 71-95 2-26 (197)
117 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00067 2.3E-08 56.0 6.1 43 47-93 23-65 (500)
118 4eun_A Thermoresistant glucoki 97.1 0.0003 1E-08 50.5 3.6 25 69-93 29-53 (200)
119 2bwj_A Adenylate kinase 5; pho 97.1 0.00027 9.2E-09 50.1 3.3 25 70-94 13-37 (199)
120 1ukz_A Uridylate kinase; trans 97.1 0.00033 1.1E-08 50.0 3.8 26 68-93 14-39 (203)
121 1uj2_A Uridine-cytidine kinase 97.1 0.00034 1.2E-08 52.1 3.9 28 67-94 20-47 (252)
122 3tlx_A Adenylate kinase 2; str 97.1 0.00062 2.1E-08 50.6 5.3 26 68-93 28-53 (243)
123 3pxi_A Negative regulator of g 97.1 0.00081 2.8E-08 57.7 6.7 48 46-93 491-545 (758)
124 3bh0_A DNAB-like replicative h 97.1 0.0029 9.9E-08 48.8 9.2 35 70-104 69-103 (315)
125 1e6c_A Shikimate kinase; phosp 97.1 0.00023 7.8E-09 49.4 2.7 25 70-94 3-27 (173)
126 2vli_A Antibiotic resistance p 97.1 0.00021 7.3E-09 50.0 2.5 25 70-94 6-30 (183)
127 2bdt_A BH3686; alpha-beta prot 97.1 0.00033 1.1E-08 49.6 3.5 23 70-92 3-25 (189)
128 2pbr_A DTMP kinase, thymidylat 97.1 0.0013 4.5E-08 46.1 6.7 24 71-94 2-25 (195)
129 1uf9_A TT1252 protein; P-loop, 97.1 0.00037 1.3E-08 49.5 3.8 26 67-92 6-31 (203)
130 1qf9_A UMP/CMP kinase, protein 97.1 0.00033 1.1E-08 49.2 3.5 26 69-94 6-31 (194)
131 2pt5_A Shikimate kinase, SK; a 97.1 0.00035 1.2E-08 48.3 3.6 24 71-94 2-25 (168)
132 1cke_A CK, MSSA, protein (cyti 97.1 0.00033 1.1E-08 50.8 3.6 24 70-93 6-29 (227)
133 2j41_A Guanylate kinase; GMP, 97.1 0.00032 1.1E-08 50.0 3.3 24 70-93 7-30 (207)
134 3e70_C DPA, signal recognition 97.1 0.0022 7.4E-08 50.2 8.3 28 68-95 128-155 (328)
135 3a00_A Guanylate kinase, GMP k 97.1 0.00026 9E-09 50.3 2.8 25 70-94 2-26 (186)
136 2if2_A Dephospho-COA kinase; a 97.1 0.00034 1.2E-08 50.0 3.3 22 70-91 2-23 (204)
137 1y63_A LMAJ004144AAA protein; 97.1 0.00033 1.1E-08 49.7 3.2 24 69-92 10-33 (184)
138 2cdn_A Adenylate kinase; phosp 97.1 0.0004 1.4E-08 49.7 3.6 26 69-94 20-45 (201)
139 1tue_A Replication protein E1; 97.1 0.00062 2.1E-08 50.2 4.6 39 55-94 45-83 (212)
140 2wwf_A Thymidilate kinase, put 97.1 0.00064 2.2E-08 48.6 4.6 28 69-96 10-37 (212)
141 3asz_A Uridine kinase; cytidin 97.0 0.00042 1.4E-08 49.8 3.5 27 68-94 5-31 (211)
142 3b9q_A Chloroplast SRP recepto 97.0 0.0018 6.3E-08 49.9 7.3 26 69-94 100-125 (302)
143 1aky_A Adenylate kinase; ATP:A 97.0 0.0004 1.4E-08 50.5 3.3 25 70-94 5-29 (220)
144 1vma_A Cell division protein F 97.0 0.0038 1.3E-07 48.3 9.0 42 54-95 83-130 (306)
145 1jjv_A Dephospho-COA kinase; P 97.0 0.00043 1.5E-08 49.6 3.4 22 70-91 3-24 (206)
146 2qor_A Guanylate kinase; phosp 97.0 0.00032 1.1E-08 50.5 2.6 25 69-93 12-36 (204)
147 3tau_A Guanylate kinase, GMP k 97.0 0.0004 1.4E-08 50.3 3.2 26 69-94 8-33 (208)
148 1ye8_A Protein THEP1, hypothet 97.0 0.00045 1.6E-08 49.2 3.3 24 71-94 2-25 (178)
149 2bbw_A Adenylate kinase 4, AK4 97.0 0.00048 1.6E-08 51.0 3.6 25 69-93 27-51 (246)
150 1xjc_A MOBB protein homolog; s 97.0 0.00084 2.9E-08 47.8 4.6 28 69-96 4-31 (169)
151 2yhs_A FTSY, cell division pro 97.0 0.0022 7.6E-08 52.9 7.7 27 69-95 293-319 (503)
152 4e22_A Cytidylate kinase; P-lo 97.0 0.00047 1.6E-08 51.5 3.3 24 69-92 27-50 (252)
153 2qt1_A Nicotinamide riboside k 97.0 0.00052 1.8E-08 49.3 3.3 26 68-93 20-45 (207)
154 2og2_A Putative signal recogni 97.0 0.0024 8.2E-08 50.6 7.4 27 69-95 157-183 (359)
155 4gp7_A Metallophosphoesterase; 96.9 0.00042 1.4E-08 48.7 2.7 20 70-89 10-29 (171)
156 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00064 2.2E-08 51.0 3.7 26 69-94 4-29 (260)
157 3k1j_A LON protease, ATP-depen 96.9 0.0011 3.8E-08 55.5 5.5 47 46-96 41-87 (604)
158 3fb4_A Adenylate kinase; psych 96.9 0.00064 2.2E-08 49.0 3.6 23 71-93 2-24 (216)
159 1gtv_A TMK, thymidylate kinase 96.9 0.00038 1.3E-08 49.9 2.3 24 71-94 2-25 (214)
160 2grj_A Dephospho-COA kinase; T 96.9 0.00085 2.9E-08 48.5 4.1 27 67-93 10-36 (192)
161 1r6b_X CLPA protein; AAA+, N-t 96.9 0.00069 2.4E-08 58.0 4.2 49 46-94 458-513 (758)
162 1zd8_A GTP:AMP phosphotransfer 96.9 0.00055 1.9E-08 50.0 3.1 25 69-93 7-31 (227)
163 1ex7_A Guanylate kinase; subst 96.9 0.00047 1.6E-08 49.8 2.6 25 70-94 2-26 (186)
164 3ake_A Cytidylate kinase; CMP 96.9 0.00072 2.5E-08 48.2 3.6 24 71-94 4-27 (208)
165 2px0_A Flagellar biosynthesis 96.9 0.0022 7.7E-08 49.3 6.5 27 68-94 104-130 (296)
166 1zak_A Adenylate kinase; ATP:A 96.9 0.00054 1.8E-08 49.8 2.8 26 69-94 5-30 (222)
167 3dl0_A Adenylate kinase; phosp 96.9 0.00068 2.3E-08 48.9 3.4 23 71-93 2-24 (216)
168 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0011 3.7E-08 47.7 4.5 34 70-103 24-57 (235)
169 3tqc_A Pantothenate kinase; bi 96.9 0.0017 5.9E-08 50.6 5.8 28 67-94 90-117 (321)
170 3m6a_A ATP-dependent protease 96.9 0.0012 4E-08 54.9 5.1 50 47-96 82-135 (543)
171 3p32_A Probable GTPase RV1496/ 96.9 0.003 1E-07 49.5 7.3 37 57-93 67-103 (355)
172 2jeo_A Uridine-cytidine kinase 96.9 0.00067 2.3E-08 50.3 3.3 26 68-93 24-49 (245)
173 4a74_A DNA repair and recombin 96.9 0.0014 4.9E-08 47.2 5.1 24 70-93 26-49 (231)
174 1lvg_A Guanylate kinase, GMP k 96.8 0.00053 1.8E-08 49.4 2.6 24 70-93 5-28 (198)
175 2xxa_A Signal recognition part 96.8 0.009 3.1E-07 48.4 10.1 29 68-96 99-127 (433)
176 2cvh_A DNA repair and recombin 96.8 0.0019 6.5E-08 46.2 5.6 32 70-104 21-52 (220)
177 2ehv_A Hypothetical protein PH 96.8 0.0012 4.1E-08 48.2 4.5 22 70-91 31-52 (251)
178 1znw_A Guanylate kinase, GMP k 96.8 0.00075 2.6E-08 48.7 3.3 24 70-93 21-44 (207)
179 3nwj_A ATSK2; P loop, shikimat 96.8 0.00057 2E-08 51.5 2.7 26 70-95 49-74 (250)
180 2pez_A Bifunctional 3'-phospho 96.8 0.00099 3.4E-08 46.7 3.8 24 70-93 6-29 (179)
181 2hf9_A Probable hydrogenase ni 96.8 0.0013 4.3E-08 47.5 4.3 37 55-93 26-62 (226)
182 1m7g_A Adenylylsulfate kinase; 96.8 0.0011 3.6E-08 48.0 3.8 26 69-94 25-50 (211)
183 3aez_A Pantothenate kinase; tr 96.8 0.00086 2.9E-08 52.0 3.5 28 67-94 88-115 (312)
184 1u0j_A DNA replication protein 96.8 0.0016 5.6E-08 49.6 5.0 35 58-92 93-127 (267)
185 3kl4_A SRP54, signal recogniti 96.8 0.0067 2.3E-07 49.2 8.9 29 68-96 96-124 (433)
186 2wsm_A Hydrogenase expression/ 96.8 0.0018 6.2E-08 46.5 5.1 44 50-95 13-56 (221)
187 2v54_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 47.7 3.2 24 70-93 5-28 (204)
188 3umf_A Adenylate kinase; rossm 96.8 0.0012 4E-08 48.8 4.0 27 67-93 27-53 (217)
189 1gvn_B Zeta; postsegregational 96.8 0.0011 3.9E-08 50.5 4.1 26 68-93 32-57 (287)
190 3hr8_A Protein RECA; alpha and 96.8 0.0035 1.2E-07 49.6 6.9 82 23-104 8-96 (356)
191 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.6E-08 50.5 3.8 24 68-91 74-97 (281)
192 1n0w_A DNA repair protein RAD5 96.7 0.0032 1.1E-07 45.7 6.2 35 70-104 25-65 (243)
193 2p5t_B PEZT; postsegregational 96.7 0.00089 3E-08 49.9 3.2 26 69-94 32-57 (253)
194 3be4_A Adenylate kinase; malar 96.7 0.00095 3.2E-08 48.5 3.3 25 70-94 6-30 (217)
195 1ak2_A Adenylate kinase isoenz 96.7 0.00099 3.4E-08 48.9 3.4 26 69-94 16-41 (233)
196 1z6g_A Guanylate kinase; struc 96.7 0.00077 2.6E-08 49.3 2.7 24 70-93 24-47 (218)
197 3fwy_A Light-independent proto 96.7 0.001 3.5E-08 51.6 3.5 28 67-94 46-73 (314)
198 2dr3_A UPF0273 protein PH0284; 96.7 0.0018 6.2E-08 47.1 4.7 35 70-104 24-58 (247)
199 1vht_A Dephospho-COA kinase; s 96.7 0.0011 3.9E-08 47.8 3.5 23 69-91 4-26 (218)
200 1e4v_A Adenylate kinase; trans 96.7 0.0013 4.3E-08 47.6 3.5 23 71-93 2-24 (214)
201 3ney_A 55 kDa erythrocyte memb 96.7 0.0011 3.8E-08 48.3 3.2 26 69-94 19-44 (197)
202 2xb4_A Adenylate kinase; ATP-b 96.7 0.0013 4.5E-08 48.0 3.6 23 71-93 2-24 (223)
203 3zvl_A Bifunctional polynucleo 96.6 0.0034 1.2E-07 50.4 6.2 26 68-93 257-282 (416)
204 4eaq_A DTMP kinase, thymidylat 96.6 0.0042 1.4E-07 45.8 6.3 27 69-95 26-52 (229)
205 3r20_A Cytidylate kinase; stru 96.6 0.0012 4.3E-08 49.2 3.4 26 69-94 9-34 (233)
206 2eyu_A Twitching motility prot 96.6 0.0021 7.1E-08 48.5 4.7 27 69-95 25-51 (261)
207 2p67_A LAO/AO transport system 96.6 0.0023 8E-08 49.9 5.1 28 66-93 53-80 (341)
208 1xp8_A RECA protein, recombina 96.6 0.004 1.4E-07 49.4 6.4 99 4-104 5-109 (366)
209 1rj9_A FTSY, signal recognitio 96.6 0.0026 8.8E-08 49.1 5.1 27 69-95 102-128 (304)
210 3upu_A ATP-dependent DNA helic 96.6 0.0093 3.2E-07 48.2 8.6 33 71-103 47-80 (459)
211 2q6t_A DNAB replication FORK h 96.6 0.0078 2.7E-07 48.5 8.1 35 70-104 201-236 (444)
212 1cr0_A DNA primase/helicase; R 96.6 0.0045 1.5E-07 46.8 6.4 35 70-104 36-71 (296)
213 1htw_A HI0065; nucleotide-bind 96.6 0.0016 5.5E-08 45.6 3.5 26 68-93 32-57 (158)
214 1s96_A Guanylate kinase, GMP k 96.6 0.0014 4.7E-08 48.3 3.3 25 70-94 17-41 (219)
215 3lnc_A Guanylate kinase, GMP k 96.6 0.00077 2.6E-08 49.3 1.9 23 70-92 28-51 (231)
216 1svm_A Large T antigen; AAA+ f 96.6 0.0033 1.1E-07 50.1 5.6 27 67-93 167-193 (377)
217 1sq5_A Pantothenate kinase; P- 96.6 0.0015 5.1E-08 50.3 3.5 28 67-94 78-105 (308)
218 1qvr_A CLPB protein; coiled co 96.5 0.0038 1.3E-07 54.4 6.3 48 47-94 559-613 (854)
219 1ltq_A Polynucleotide kinase; 96.5 0.0016 5.5E-08 49.3 3.5 23 70-92 3-25 (301)
220 2qm8_A GTPase/ATPase; G protei 96.5 0.004 1.4E-07 48.6 5.9 29 65-93 51-79 (337)
221 3d3q_A TRNA delta(2)-isopenten 96.5 0.0017 5.8E-08 51.1 3.7 25 70-94 8-32 (340)
222 1u94_A RECA protein, recombina 96.5 0.005 1.7E-07 48.6 6.4 82 23-104 11-98 (356)
223 1a7j_A Phosphoribulokinase; tr 96.5 0.001 3.4E-08 51.0 2.3 27 68-94 4-30 (290)
224 2i3b_A HCR-ntpase, human cance 96.5 0.0015 5.1E-08 47.1 3.1 23 71-93 3-25 (189)
225 1j8m_F SRP54, signal recogniti 96.5 0.0063 2.1E-07 46.8 6.7 27 69-95 98-124 (297)
226 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.2E-08 47.6 3.5 26 68-93 15-40 (236)
227 3sr0_A Adenylate kinase; phosp 96.5 0.0019 6.4E-08 47.2 3.5 23 71-93 2-24 (206)
228 4a1f_A DNAB helicase, replicat 96.5 0.0064 2.2E-07 47.7 6.7 35 70-104 47-81 (338)
229 1np6_A Molybdopterin-guanine d 96.5 0.0033 1.1E-07 44.7 4.6 26 69-94 6-31 (174)
230 3crm_A TRNA delta(2)-isopenten 96.5 0.0017 5.8E-08 50.8 3.3 25 70-94 6-30 (323)
231 2gno_A DNA polymerase III, gam 96.5 0.0033 1.1E-07 48.5 4.9 41 50-92 1-41 (305)
232 1ypw_A Transitional endoplasmi 96.5 0.0011 3.9E-08 57.5 2.4 52 46-97 477-539 (806)
233 2r6a_A DNAB helicase, replicat 96.4 0.0084 2.9E-07 48.5 7.4 35 70-104 204-239 (454)
234 3b85_A Phosphate starvation-in 96.4 0.0016 5.3E-08 47.6 2.8 23 70-92 23-45 (208)
235 4edh_A DTMP kinase, thymidylat 96.4 0.0094 3.2E-07 43.6 6.9 27 70-96 7-33 (213)
236 2onk_A Molybdate/tungstate ABC 96.4 0.0019 6.4E-08 48.2 3.1 24 70-93 25-48 (240)
237 2pcj_A ABC transporter, lipopr 96.4 0.0015 5.2E-08 48.1 2.6 23 70-92 31-53 (224)
238 3tif_A Uncharacterized ABC tra 96.4 0.0018 6.1E-08 48.1 3.0 23 70-92 32-54 (235)
239 2f1r_A Molybdopterin-guanine d 96.4 0.0012 4.2E-08 46.8 2.0 26 70-95 3-28 (171)
240 2z43_A DNA repair and recombin 96.4 0.0067 2.3E-07 46.9 6.2 35 70-104 108-148 (324)
241 1v5w_A DMC1, meiotic recombina 96.3 0.014 4.8E-07 45.5 7.9 36 69-104 122-163 (343)
242 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0023 7.7E-08 47.9 3.1 23 70-92 30-52 (250)
243 2zr9_A Protein RECA, recombina 96.3 0.0037 1.3E-07 49.1 4.5 82 23-104 9-96 (349)
244 2cbz_A Multidrug resistance-as 96.3 0.0019 6.4E-08 48.0 2.6 24 70-93 32-55 (237)
245 1oix_A RAS-related protein RAB 96.3 0.0031 1.1E-07 44.5 3.7 24 69-92 29-52 (191)
246 1b0u_A Histidine permease; ABC 96.3 0.0019 6.5E-08 48.7 2.6 23 70-92 33-55 (262)
247 3a8t_A Adenylate isopentenyltr 96.3 0.0017 6E-08 51.1 2.5 26 69-94 40-65 (339)
248 2f9l_A RAB11B, member RAS onco 96.3 0.0025 8.6E-08 45.2 3.1 24 69-92 5-28 (199)
249 1yrb_A ATP(GTP)binding protein 96.3 0.006 2.1E-07 44.9 5.3 26 69-94 14-39 (262)
250 2zu0_C Probable ATP-dependent 96.3 0.0025 8.5E-08 48.2 3.1 23 70-92 47-69 (267)
251 1g6h_A High-affinity branched- 96.3 0.002 6.9E-08 48.4 2.6 23 70-92 34-56 (257)
252 1ji0_A ABC transporter; ATP bi 96.3 0.0021 7.1E-08 47.8 2.6 23 70-92 33-55 (240)
253 2v9p_A Replication protein E1; 96.2 0.0029 9.9E-08 49.1 3.4 26 68-93 125-150 (305)
254 3gfo_A Cobalt import ATP-bindi 96.2 0.0025 8.6E-08 48.6 3.0 23 70-92 35-57 (275)
255 2dyk_A GTP-binding protein; GT 96.2 0.0037 1.3E-07 42.1 3.5 23 70-92 2-24 (161)
256 2zts_A Putative uncharacterize 96.2 0.0054 1.9E-07 44.6 4.7 35 70-104 31-66 (251)
257 2qi9_C Vitamin B12 import ATP- 96.2 0.0024 8.2E-08 47.9 2.8 32 70-103 27-58 (249)
258 1nlf_A Regulatory protein REPA 96.2 0.0028 9.5E-08 47.7 3.1 25 70-94 31-55 (279)
259 4g1u_C Hemin import ATP-bindin 96.2 0.0026 8.9E-08 48.1 3.0 23 70-92 38-60 (266)
260 2h92_A Cytidylate kinase; ross 96.2 0.0025 8.6E-08 45.9 2.8 24 70-93 4-27 (219)
261 1mv5_A LMRA, multidrug resista 96.2 0.0025 8.6E-08 47.4 2.8 23 70-92 29-51 (243)
262 2pze_A Cystic fibrosis transme 96.2 0.0023 8E-08 47.2 2.6 24 70-93 35-58 (229)
263 3bgw_A DNAB-like replicative h 96.2 0.011 3.6E-07 48.0 6.7 35 70-104 198-232 (444)
264 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0036 1.2E-07 49.1 3.7 23 70-92 124-146 (331)
265 2olj_A Amino acid ABC transpor 96.2 0.0023 8E-08 48.4 2.6 23 70-92 51-73 (263)
266 2ff7_A Alpha-hemolysin translo 96.2 0.0024 8.2E-08 47.8 2.6 23 70-92 36-58 (247)
267 3v9p_A DTMP kinase, thymidylat 96.2 0.0093 3.2E-07 44.2 5.8 27 70-96 26-52 (227)
268 1ls1_A Signal recognition part 96.2 0.0061 2.1E-07 46.7 4.9 27 69-95 98-124 (295)
269 3end_A Light-independent proto 96.2 0.0067 2.3E-07 46.1 5.1 30 67-96 39-68 (307)
270 1cp2_A CP2, nitrogenase iron p 96.2 0.0069 2.4E-07 44.9 5.1 26 70-95 2-27 (269)
271 3sop_A Neuronal-specific septi 96.2 0.0033 1.1E-07 47.7 3.3 22 71-92 4-25 (270)
272 2ocp_A DGK, deoxyguanosine kin 96.2 0.004 1.4E-07 45.8 3.7 25 70-94 3-27 (241)
273 1vpl_A ABC transporter, ATP-bi 96.2 0.0025 8.6E-08 48.0 2.6 23 70-92 42-64 (256)
274 3cf2_A TER ATPase, transitiona 96.1 0.0037 1.3E-07 54.4 3.9 48 46-93 477-535 (806)
275 2ghi_A Transport protein; mult 96.1 0.0026 8.8E-08 48.0 2.6 24 70-93 47-70 (260)
276 2ixe_A Antigen peptide transpo 96.1 0.0026 8.8E-08 48.3 2.6 23 70-92 46-68 (271)
277 2axn_A 6-phosphofructo-2-kinas 96.1 0.0067 2.3E-07 50.2 5.3 29 69-97 35-63 (520)
278 1sgw_A Putative ABC transporte 96.1 0.0021 7.2E-08 47.2 2.0 24 70-93 36-59 (214)
279 2yz2_A Putative ABC transporte 96.1 0.0026 9E-08 48.0 2.6 23 70-92 34-56 (266)
280 3exa_A TRNA delta(2)-isopenten 96.1 0.0036 1.2E-07 48.9 3.4 25 70-94 4-28 (322)
281 2ce2_X GTPase HRAS; signaling 96.1 0.0036 1.2E-07 42.1 3.1 22 71-92 5-26 (166)
282 2ihy_A ABC transporter, ATP-bi 96.1 0.0028 9.4E-08 48.4 2.6 24 70-93 48-71 (279)
283 2wji_A Ferrous iron transport 96.1 0.0042 1.4E-07 42.6 3.4 22 70-91 4-25 (165)
284 2nq2_C Hypothetical ABC transp 96.1 0.0029 9.9E-08 47.5 2.7 24 70-93 32-55 (253)
285 4gzl_A RAS-related C3 botulinu 96.1 0.0044 1.5E-07 44.2 3.5 24 68-91 29-52 (204)
286 3hjn_A DTMP kinase, thymidylat 96.1 0.017 5.9E-07 41.5 6.7 34 71-104 2-35 (197)
287 3lv8_A DTMP kinase, thymidylat 96.1 0.014 4.8E-07 43.4 6.4 35 70-104 28-63 (236)
288 2v3c_C SRP54, signal recogniti 96.1 0.0035 1.2E-07 50.7 3.3 26 69-94 99-124 (432)
289 2j37_W Signal recognition part 96.1 0.015 5.1E-07 48.0 6.9 28 68-95 100-127 (504)
290 3dm5_A SRP54, signal recogniti 96.0 0.0079 2.7E-07 48.9 5.2 29 68-96 99-127 (443)
291 3fdi_A Uncharacterized protein 96.0 0.0046 1.6E-07 44.7 3.5 27 70-96 7-33 (201)
292 3gmt_A Adenylate kinase; ssgci 96.0 0.0044 1.5E-07 46.2 3.4 25 69-93 8-32 (230)
293 3foz_A TRNA delta(2)-isopenten 96.0 0.0046 1.6E-07 48.2 3.6 27 68-94 9-35 (316)
294 2i1q_A DNA repair and recombin 96.0 0.012 4.2E-07 45.1 6.0 24 69-92 98-121 (322)
295 2zej_A Dardarin, leucine-rich 96.0 0.0036 1.2E-07 43.8 2.7 21 71-91 4-24 (184)
296 2ged_A SR-beta, signal recogni 96.0 0.006 2E-07 42.6 3.9 24 68-91 47-70 (193)
297 1a5t_A Delta prime, HOLB; zinc 96.0 0.011 3.8E-07 45.7 5.8 42 52-94 8-49 (334)
298 1tq4_A IIGP1, interferon-induc 96.0 0.0043 1.5E-07 50.0 3.4 24 68-91 68-91 (413)
299 3kta_A Chromosome segregation 96.0 0.0044 1.5E-07 43.3 3.1 22 70-91 27-48 (182)
300 3ld9_A DTMP kinase, thymidylat 96.0 0.013 4.5E-07 43.3 5.8 27 69-95 21-47 (223)
301 2afh_E Nitrogenase iron protei 96.0 0.0093 3.2E-07 44.9 5.1 27 69-95 2-28 (289)
302 1z2a_A RAS-related protein RAB 96.0 0.0064 2.2E-07 41.1 3.8 24 69-92 5-28 (168)
303 3con_A GTPase NRAS; structural 96.0 0.0046 1.6E-07 43.1 3.1 23 70-92 22-44 (190)
304 4tmk_A Protein (thymidylate ki 96.0 0.019 6.6E-07 41.9 6.6 34 70-103 4-38 (213)
305 2wjg_A FEOB, ferrous iron tran 96.0 0.0052 1.8E-07 42.7 3.3 23 69-91 7-29 (188)
306 1bif_A 6-phosphofructo-2-kinas 96.0 0.0083 2.8E-07 48.7 5.0 29 69-97 39-67 (469)
307 4dzz_A Plasmid partitioning pr 95.9 0.014 4.8E-07 41.2 5.7 34 70-103 2-36 (206)
308 1u8z_A RAS-related protein RAL 95.9 0.0049 1.7E-07 41.5 3.1 23 70-92 5-27 (168)
309 2ewv_A Twitching motility prot 95.9 0.0083 2.8E-07 47.5 4.8 26 69-94 136-161 (372)
310 1lw7_A Transcriptional regulat 95.9 0.0049 1.7E-07 48.3 3.4 26 69-94 170-195 (365)
311 1c1y_A RAS-related protein RAP 95.9 0.0052 1.8E-07 41.5 3.1 22 70-91 4-25 (167)
312 2nzj_A GTP-binding protein REM 95.9 0.0073 2.5E-07 41.2 3.8 23 69-91 4-26 (175)
313 2pjz_A Hypothetical protein ST 95.9 0.004 1.4E-07 47.1 2.6 24 70-93 31-54 (263)
314 1kao_A RAP2A; GTP-binding prot 95.9 0.0054 1.9E-07 41.2 3.1 22 70-91 4-25 (167)
315 1nrj_B SR-beta, signal recogni 95.9 0.0061 2.1E-07 43.5 3.5 25 68-92 11-35 (218)
316 3eph_A TRNA isopentenyltransfe 95.9 0.0062 2.1E-07 49.1 3.8 25 70-94 3-27 (409)
317 3jvv_A Twitching mobility prot 95.9 0.0083 2.8E-07 47.3 4.5 25 70-94 124-148 (356)
318 2vp4_A Deoxynucleoside kinase; 95.9 0.0028 9.7E-08 46.4 1.7 24 69-92 20-43 (230)
319 2orw_A Thymidine kinase; TMTK, 95.9 0.01 3.5E-07 42.2 4.6 23 70-92 4-26 (184)
320 3t1o_A Gliding protein MGLA; G 95.8 0.0055 1.9E-07 42.6 3.1 24 69-92 14-37 (198)
321 3fvq_A Fe(3+) IONS import ATP- 95.8 0.005 1.7E-07 48.8 3.1 23 70-92 31-53 (359)
322 2www_A Methylmalonic aciduria 95.8 0.012 4E-07 46.1 5.2 26 68-93 73-98 (349)
323 1z08_A RAS-related protein RAB 95.8 0.0058 2E-07 41.5 3.1 24 69-92 6-29 (170)
324 1z0j_A RAB-22, RAS-related pro 95.8 0.0059 2E-07 41.4 3.1 23 70-92 7-29 (170)
325 1ek0_A Protein (GTP-binding pr 95.8 0.0059 2E-07 41.3 3.1 22 71-92 5-26 (170)
326 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0058 2E-07 42.5 3.1 24 69-92 7-30 (184)
327 2r8r_A Sensor protein; KDPD, P 95.8 0.015 5.2E-07 43.3 5.4 27 70-96 7-33 (228)
328 3f9v_A Minichromosome maintena 95.8 0.0032 1.1E-07 52.8 2.0 48 46-93 295-351 (595)
329 1pzn_A RAD51, DNA repair and r 95.8 0.0059 2E-07 47.9 3.3 25 69-93 131-155 (349)
330 1ky3_A GTP-binding protein YPT 95.8 0.0086 3E-07 41.0 3.8 24 68-91 7-30 (182)
331 2erx_A GTP-binding protein DI- 95.8 0.005 1.7E-07 41.7 2.6 22 70-91 4-25 (172)
332 1r2q_A RAS-related protein RAB 95.8 0.0064 2.2E-07 41.1 3.1 22 70-91 7-28 (170)
333 2fn4_A P23, RAS-related protei 95.8 0.0097 3.3E-07 40.7 4.0 25 68-92 8-32 (181)
334 1r8s_A ADP-ribosylation factor 95.7 0.0066 2.2E-07 41.0 3.1 20 72-91 3-22 (164)
335 1z47_A CYSA, putative ABC-tran 95.7 0.0058 2E-07 48.3 3.1 23 70-92 42-64 (355)
336 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0066 2.2E-07 41.6 3.1 23 69-91 7-29 (177)
337 3nh6_A ATP-binding cassette SU 95.7 0.0044 1.5E-07 48.0 2.3 22 70-91 81-102 (306)
338 3q72_A GTP-binding protein RAD 95.7 0.0057 1.9E-07 41.4 2.7 21 71-91 4-24 (166)
339 3q85_A GTP-binding protein REM 95.7 0.0087 3E-07 40.6 3.7 21 70-90 3-23 (169)
340 3tui_C Methionine import ATP-b 95.7 0.006 2E-07 48.5 3.1 23 70-92 55-77 (366)
341 2bbs_A Cystic fibrosis transme 95.7 0.005 1.7E-07 47.3 2.6 24 70-93 65-88 (290)
342 3io3_A DEHA2D07832P; chaperone 95.7 0.02 6.9E-07 44.9 6.2 29 66-94 15-43 (348)
343 1svi_A GTP-binding protein YSX 95.7 0.0073 2.5E-07 42.1 3.3 25 67-91 21-45 (195)
344 2yyz_A Sugar ABC transporter, 95.7 0.0062 2.1E-07 48.2 3.1 23 70-92 30-52 (359)
345 1z0f_A RAB14, member RAS oncog 95.7 0.007 2.4E-07 41.3 3.1 25 68-92 14-38 (179)
346 2gj8_A MNME, tRNA modification 95.7 0.0064 2.2E-07 42.2 2.9 23 70-92 5-27 (172)
347 2it1_A 362AA long hypothetical 95.7 0.0064 2.2E-07 48.2 3.1 23 70-92 30-52 (362)
348 1g29_1 MALK, maltose transport 95.7 0.0064 2.2E-07 48.3 3.1 23 70-92 30-52 (372)
349 1g16_A RAS-related protein SEC 95.7 0.01 3.5E-07 40.2 3.8 22 70-91 4-25 (170)
350 2lkc_A Translation initiation 95.7 0.0072 2.5E-07 41.4 3.1 24 68-91 7-30 (178)
351 1g8f_A Sulfate adenylyltransfe 95.7 0.012 4.2E-07 48.6 5.0 28 68-95 394-421 (511)
352 1fzq_A ADP-ribosylation factor 95.7 0.011 3.7E-07 41.2 4.0 25 67-91 14-38 (181)
353 3rlf_A Maltose/maltodextrin im 95.7 0.0065 2.2E-07 48.5 3.1 23 70-92 30-52 (381)
354 3kjh_A CO dehydrogenase/acetyl 95.7 0.014 4.9E-07 42.3 4.8 25 72-96 3-27 (254)
355 3bc1_A RAS-related protein RAB 95.7 0.0073 2.5E-07 41.7 3.1 23 69-91 11-33 (195)
356 4dsu_A GTPase KRAS, isoform 2B 95.7 0.0073 2.5E-07 41.7 3.1 23 70-92 5-27 (189)
357 4hlc_A DTMP kinase, thymidylat 95.6 0.045 1.5E-06 39.6 7.4 30 70-99 3-32 (205)
358 1v43_A Sugar-binding transport 95.6 0.0067 2.3E-07 48.2 3.1 23 70-92 38-60 (372)
359 1upt_A ARL1, ADP-ribosylation 95.6 0.0076 2.6E-07 40.9 3.1 23 69-91 7-29 (171)
360 2ffh_A Protein (FFH); SRP54, s 95.6 0.014 4.9E-07 47.1 5.1 28 69-96 98-125 (425)
361 1nij_A Hypothetical protein YJ 95.6 0.0087 3E-07 46.2 3.7 25 68-92 3-27 (318)
362 3cr8_A Sulfate adenylyltranfer 95.6 0.0067 2.3E-07 50.6 3.2 26 70-95 370-395 (552)
363 1m2o_B GTP-binding protein SAR 95.6 0.0075 2.6E-07 42.4 3.1 22 70-91 24-45 (190)
364 2qnr_A Septin-2, protein NEDD5 95.6 0.0062 2.1E-07 46.7 2.8 21 71-91 20-40 (301)
365 3d31_A Sulfate/molybdate ABC t 95.6 0.0055 1.9E-07 48.3 2.5 23 70-92 27-49 (348)
366 2a9k_A RAS-related protein RAL 95.6 0.0079 2.7E-07 41.4 3.1 23 69-91 18-40 (187)
367 3kkq_A RAS-related protein M-R 95.6 0.0079 2.7E-07 41.5 3.1 25 68-92 17-41 (183)
368 3ihw_A Centg3; RAS, centaurin, 95.6 0.0079 2.7E-07 42.2 3.1 23 69-91 20-42 (184)
369 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.008 2.7E-07 41.4 3.1 22 70-91 6-27 (186)
370 3tw8_B RAS-related protein RAB 95.6 0.0088 3E-07 40.9 3.3 24 68-91 8-31 (181)
371 3clv_A RAB5 protein, putative; 95.6 0.008 2.7E-07 41.7 3.1 24 69-92 7-30 (208)
372 2iwr_A Centaurin gamma 1; ANK 95.6 0.0065 2.2E-07 41.8 2.6 22 70-91 8-29 (178)
373 3c5c_A RAS-like protein 12; GD 95.6 0.008 2.7E-07 42.1 3.1 23 69-91 21-43 (187)
374 2oil_A CATX-8, RAS-related pro 95.6 0.008 2.7E-07 42.0 3.1 23 69-91 25-47 (193)
375 2bme_A RAB4A, RAS-related prot 95.6 0.0081 2.8E-07 41.5 3.1 23 69-91 10-32 (186)
376 3pqc_A Probable GTP-binding pr 95.6 0.0084 2.9E-07 41.6 3.1 25 68-92 22-46 (195)
377 2y8e_A RAB-protein 6, GH09086P 95.6 0.0083 2.8E-07 40.9 3.1 22 70-91 15-36 (179)
378 3hdt_A Putative kinase; struct 95.6 0.0099 3.4E-07 43.8 3.6 26 69-94 14-39 (223)
379 2gk6_A Regulator of nonsense t 95.6 0.041 1.4E-06 46.2 7.8 47 53-104 184-230 (624)
380 1p5z_B DCK, deoxycytidine kina 95.5 0.0036 1.2E-07 46.7 1.2 26 68-93 23-48 (263)
381 3bwd_D RAC-like GTP-binding pr 95.5 0.0086 3E-07 41.1 3.1 22 70-91 9-30 (182)
382 2efe_B Small GTP-binding prote 95.5 0.0087 3E-07 41.1 3.1 23 69-91 12-34 (181)
383 1vg8_A RAS-related protein RAB 95.5 0.012 4E-07 41.4 3.8 25 68-92 7-31 (207)
384 2cxx_A Probable GTP-binding pr 95.5 0.0081 2.8E-07 41.6 2.9 21 71-91 3-23 (190)
385 1pui_A ENGB, probable GTP-bind 95.5 0.0041 1.4E-07 44.1 1.4 24 68-91 25-48 (210)
386 3t5g_A GTP-binding protein RHE 95.5 0.0089 3E-07 41.2 3.1 23 69-91 6-28 (181)
387 1oxx_K GLCV, glucose, ABC tran 95.5 0.005 1.7E-07 48.6 1.9 23 70-92 32-54 (353)
388 2atv_A RERG, RAS-like estrogen 95.5 0.0089 3.1E-07 42.0 3.1 24 69-92 28-51 (196)
389 2hxs_A RAB-26, RAS-related pro 95.5 0.013 4.5E-07 40.0 3.9 23 69-91 6-28 (178)
390 2g6b_A RAS-related protein RAB 95.5 0.0094 3.2E-07 40.9 3.1 23 69-91 10-32 (180)
391 2gf0_A GTP-binding protein DI- 95.5 0.014 4.8E-07 40.7 4.0 23 69-91 8-30 (199)
392 1h65_A Chloroplast outer envel 95.4 0.023 7.8E-07 42.4 5.4 26 67-92 37-62 (270)
393 3def_A T7I23.11 protein; chlor 95.4 0.027 9.1E-07 41.9 5.7 25 67-91 34-58 (262)
394 1p9r_A General secretion pathw 95.4 0.018 6.1E-07 46.4 5.0 28 68-95 166-193 (418)
395 3cwq_A Para family chromosome 95.4 0.03 1E-06 40.3 5.8 32 71-103 2-34 (209)
396 1f6b_A SAR1; gtpases, N-termin 95.4 0.0078 2.7E-07 42.7 2.6 22 70-91 26-47 (198)
397 3oes_A GTPase rhebl1; small GT 95.4 0.0096 3.3E-07 42.1 3.1 24 68-91 23-46 (201)
398 3gd7_A Fusion complex of cysti 95.4 0.0088 3E-07 47.8 3.1 23 70-92 48-70 (390)
399 4b3f_X DNA-binding protein smu 95.4 0.053 1.8E-06 45.6 8.0 46 53-104 193-239 (646)
400 2fg5_A RAB-22B, RAS-related pr 95.4 0.0098 3.3E-07 41.7 3.1 23 69-91 23-45 (192)
401 3dz8_A RAS-related protein RAB 95.4 0.011 3.6E-07 41.4 3.2 24 69-92 23-46 (191)
402 2bov_A RAla, RAS-related prote 95.4 0.016 5.3E-07 40.7 4.1 24 68-91 13-36 (206)
403 3tkl_A RAS-related protein RAB 95.4 0.01 3.4E-07 41.4 3.1 24 68-91 15-38 (196)
404 2obl_A ESCN; ATPase, hydrolase 95.4 0.01 3.4E-07 46.7 3.3 25 70-94 72-96 (347)
405 3ea0_A ATPase, para family; al 95.4 0.025 8.4E-07 41.1 5.3 29 68-96 3-32 (245)
406 3ug7_A Arsenical pump-driving 95.4 0.049 1.7E-06 42.5 7.2 28 68-95 25-52 (349)
407 2gza_A Type IV secretion syste 95.4 0.0078 2.7E-07 47.4 2.6 24 70-93 176-199 (361)
408 2fh5_B SR-beta, signal recogni 95.3 0.011 3.6E-07 42.1 3.1 24 69-92 7-30 (214)
409 3fkq_A NTRC-like two-domain pr 95.3 0.031 1.1E-06 43.9 6.0 30 67-96 141-171 (373)
410 1gwn_A RHO-related GTP-binding 95.3 0.011 3.6E-07 42.4 3.1 25 68-92 27-51 (205)
411 2qmh_A HPR kinase/phosphorylas 95.3 0.0089 3E-07 43.8 2.7 24 70-93 35-58 (205)
412 1q57_A DNA primase/helicase; d 95.3 0.028 9.5E-07 45.9 5.9 35 70-104 243-278 (503)
413 2gf9_A RAS-related protein RAB 95.3 0.011 3.8E-07 41.2 3.1 24 69-92 22-45 (189)
414 1x3s_A RAS-related protein RAB 95.3 0.011 3.8E-07 41.0 3.1 24 69-92 15-38 (195)
415 3reg_A RHO-like small GTPase; 95.3 0.011 3.8E-07 41.4 3.1 24 69-92 23-46 (194)
416 2a5j_A RAS-related protein RAB 95.3 0.011 3.8E-07 41.3 3.1 23 69-91 21-43 (191)
417 1zd9_A ADP-ribosylation factor 95.3 0.011 3.8E-07 41.3 3.1 23 69-91 22-44 (188)
418 2cjw_A GTP-binding protein GEM 95.3 0.011 3.8E-07 41.7 3.1 23 69-91 6-28 (192)
419 3io5_A Recombination and repai 95.3 0.028 9.4E-07 44.1 5.5 34 71-104 30-65 (333)
420 2ew1_A RAS-related protein RAB 95.3 0.011 3.8E-07 42.2 3.1 24 68-91 25-48 (201)
421 3cbq_A GTP-binding protein REM 95.3 0.0078 2.7E-07 42.6 2.2 23 68-90 22-44 (195)
422 2p5s_A RAS and EF-hand domain 95.3 0.011 3.9E-07 41.6 3.1 24 68-91 27-50 (199)
423 1z06_A RAS-related protein RAB 95.3 0.012 4.1E-07 41.0 3.1 23 69-91 20-42 (189)
424 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.009 3.1E-07 48.7 2.7 23 70-92 139-161 (460)
425 1tf7_A KAIC; homohexamer, hexa 95.3 0.017 5.9E-07 47.5 4.5 20 70-89 40-59 (525)
426 1zbd_A Rabphilin-3A; G protein 95.2 0.0095 3.3E-07 41.9 2.6 23 69-91 8-30 (203)
427 3lxx_A GTPase IMAP family memb 95.2 0.015 5.1E-07 42.5 3.7 24 68-91 28-51 (239)
428 2bcg_Y Protein YP2, GTP-bindin 95.2 0.012 4.2E-07 41.5 3.1 23 69-91 8-30 (206)
429 1moz_A ARL1, ADP-ribosylation 95.2 0.0083 2.8E-07 41.3 2.1 24 68-91 17-40 (183)
430 3llu_A RAS-related GTP-binding 95.2 0.0094 3.2E-07 42.0 2.4 23 69-91 20-42 (196)
431 1ega_A Protein (GTP-binding pr 95.2 0.014 4.7E-07 44.7 3.4 24 69-92 8-31 (301)
432 1x6v_B Bifunctional 3'-phospho 95.2 0.014 4.9E-07 49.4 3.8 26 68-93 51-76 (630)
433 3cph_A RAS-related protein SEC 95.2 0.013 4.4E-07 41.4 3.1 23 69-91 20-42 (213)
434 2b8t_A Thymidine kinase; deoxy 95.2 0.028 9.6E-07 41.5 5.0 27 70-96 13-39 (223)
435 2atx_A Small GTP binding prote 95.2 0.013 4.5E-07 40.9 3.1 24 69-92 18-41 (194)
436 3k53_A Ferrous iron transport 95.1 0.014 4.9E-07 43.6 3.4 24 69-92 3-26 (271)
437 2fv8_A H6, RHO-related GTP-bin 95.1 0.013 4.5E-07 41.6 3.1 23 69-91 25-47 (207)
438 3iqw_A Tail-anchored protein t 95.1 0.043 1.5E-06 42.8 6.2 29 68-96 15-43 (334)
439 2j0v_A RAC-like GTP-binding pr 95.1 0.014 4.7E-07 41.4 3.1 23 69-91 9-31 (212)
440 1m8p_A Sulfate adenylyltransfe 95.1 0.018 6.1E-07 48.2 4.1 26 69-94 396-421 (573)
441 3e1s_A Exodeoxyribonuclease V, 95.1 0.038 1.3E-06 46.1 6.1 27 70-96 205-231 (574)
442 4bas_A ADP-ribosylation factor 95.1 0.017 5.8E-07 40.2 3.5 25 67-91 15-39 (199)
443 2qag_B Septin-6, protein NEDD5 95.1 0.012 4E-07 47.7 2.8 25 67-91 40-64 (427)
444 1g3q_A MIND ATPase, cell divis 95.1 0.031 1.1E-06 40.4 5.0 34 70-103 3-37 (237)
445 2x77_A ADP-ribosylation factor 95.1 0.021 7.2E-07 39.6 3.9 24 68-91 21-44 (189)
446 2gks_A Bifunctional SAT/APS ki 95.1 0.045 1.6E-06 45.5 6.4 26 69-94 372-397 (546)
447 3lda_A DNA repair protein RAD5 95.1 0.013 4.6E-07 46.9 3.1 22 70-91 179-200 (400)
448 2rcn_A Probable GTPase ENGC; Y 95.0 0.014 4.7E-07 46.2 3.1 23 70-92 216-238 (358)
449 1ksh_A ARF-like protein 2; sma 95.0 0.013 4.5E-07 40.5 2.7 24 68-91 17-40 (186)
450 2yv5_A YJEQ protein; hydrolase 95.0 0.014 4.9E-07 44.7 3.1 21 70-90 166-186 (302)
451 2hup_A RAS-related protein RAB 95.0 0.015 5.1E-07 41.2 3.1 24 68-91 28-51 (201)
452 2gco_A H9, RHO-related GTP-bin 95.0 0.015 5.1E-07 41.1 3.1 23 69-91 25-47 (201)
453 2q3h_A RAS homolog gene family 95.0 0.014 4.8E-07 41.0 2.9 23 69-91 20-42 (201)
454 3ch4_B Pmkase, phosphomevalona 95.0 0.022 7.5E-07 41.6 3.9 26 68-93 10-35 (202)
455 2qu8_A Putative nucleolar GTP- 95.0 0.018 6.3E-07 41.6 3.6 25 68-92 28-52 (228)
456 2b6h_A ADP-ribosylation factor 95.0 0.013 4.5E-07 41.2 2.7 23 69-91 29-51 (192)
457 3k9g_A PF-32 protein; ssgcid, 95.0 0.045 1.5E-06 40.5 5.8 36 67-103 25-61 (267)
458 1jwy_B Dynamin A GTPase domain 95.0 0.022 7.5E-07 43.1 4.1 25 67-91 22-46 (315)
459 2h17_A ADP-ribosylation factor 95.0 0.012 4.1E-07 40.8 2.4 23 69-91 21-43 (181)
460 2dpy_A FLII, flagellum-specifi 95.0 0.015 5.1E-07 47.1 3.3 25 70-94 158-182 (438)
461 1yqt_A RNAse L inhibitor; ATP- 95.0 0.014 4.7E-07 48.5 3.1 24 70-93 313-336 (538)
462 1zj6_A ADP-ribosylation factor 95.0 0.015 5E-07 40.5 2.9 24 68-91 15-38 (187)
463 2o52_A RAS-related protein RAB 95.0 0.015 5.1E-07 41.1 2.9 24 68-91 24-47 (200)
464 2j1l_A RHO-related GTP-binding 95.0 0.015 5.1E-07 41.7 2.9 23 69-91 34-56 (214)
465 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.019 6.6E-07 39.4 3.4 22 70-91 24-45 (149)
466 1yqt_A RNAse L inhibitor; ATP- 94.9 0.014 4.9E-07 48.3 3.1 23 70-92 48-70 (538)
467 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.0099 3.4E-07 46.3 2.0 24 70-93 172-195 (330)
468 2fu5_C RAS-related protein RAB 94.9 0.0084 2.9E-07 41.4 1.4 23 69-91 8-30 (183)
469 3tmk_A Thymidylate kinase; pho 94.9 0.02 7E-07 42.0 3.5 26 70-95 6-31 (216)
470 3q9l_A Septum site-determining 94.9 0.037 1.3E-06 40.5 5.0 26 70-95 3-29 (260)
471 3ozx_A RNAse L inhibitor; ATP 94.9 0.013 4.3E-07 48.7 2.6 24 70-93 295-318 (538)
472 3dzd_A Transcriptional regulat 94.9 0.069 2.4E-06 42.0 6.8 47 46-93 129-176 (368)
473 2il1_A RAB12; G-protein, GDP, 94.9 0.016 5.3E-07 40.7 2.7 23 69-91 26-48 (192)
474 2xj4_A MIPZ; replication, cell 94.8 0.053 1.8E-06 40.8 5.8 27 70-96 5-32 (286)
475 3q3j_B RHO-related GTP-binding 94.8 0.018 6.2E-07 41.3 3.1 23 69-91 27-49 (214)
476 3zq6_A Putative arsenical pump 94.8 0.053 1.8E-06 41.8 5.8 26 70-95 15-40 (324)
477 3euj_A Chromosome partition pr 94.8 0.017 5.8E-07 47.5 3.1 23 70-92 30-52 (483)
478 2xtp_A GTPase IMAP family memb 94.8 0.022 7.6E-07 42.0 3.5 24 68-91 21-44 (260)
479 4i1u_A Dephospho-COA kinase; s 94.7 0.023 7.8E-07 41.7 3.5 25 67-91 7-31 (210)
480 1dek_A Deoxynucleoside monopho 94.7 0.023 7.9E-07 42.5 3.5 23 70-92 2-24 (241)
481 3iev_A GTP-binding protein ERA 94.7 0.022 7.4E-07 43.7 3.4 25 67-91 8-32 (308)
482 1u0l_A Probable GTPase ENGC; p 94.7 0.018 6.1E-07 44.0 3.0 22 70-91 170-191 (301)
483 2f7s_A C25KG, RAS-related prot 94.7 0.019 6.4E-07 40.9 2.9 23 69-91 25-47 (217)
484 3bk7_A ABC transporter ATP-bin 94.7 0.018 6.1E-07 48.5 3.1 24 70-93 383-406 (607)
485 2g3y_A GTP-binding protein GEM 94.7 0.019 6.4E-07 41.7 2.9 23 69-91 37-59 (211)
486 3ozx_A RNAse L inhibitor; ATP 94.7 0.017 5.8E-07 48.0 2.8 23 70-92 26-48 (538)
487 3cpj_B GTP-binding protein YPT 94.6 0.021 7.3E-07 41.0 3.1 23 69-91 13-35 (223)
488 2h57_A ADP-ribosylation factor 94.6 0.015 5.2E-07 40.5 2.2 24 69-92 21-44 (190)
489 3j16_B RLI1P; ribosome recycli 94.6 0.019 6.6E-07 48.4 3.1 23 70-92 379-401 (608)
490 2qag_C Septin-7; cell cycle, c 94.6 0.015 5.2E-07 46.8 2.4 21 72-92 34-54 (418)
491 1byi_A Dethiobiotin synthase; 94.6 0.05 1.7E-06 39.0 5.0 26 70-95 2-28 (224)
492 3j16_B RLI1P; ribosome recycli 94.6 0.02 6.9E-07 48.2 3.1 23 70-92 104-126 (608)
493 1tf7_A KAIC; homohexamer, hexa 94.5 0.041 1.4E-06 45.2 4.9 26 70-95 282-307 (525)
494 1sky_E F1-ATPase, F1-ATP synth 94.5 0.032 1.1E-06 45.7 4.2 33 71-103 153-186 (473)
495 4dhe_A Probable GTP-binding pr 94.5 0.015 5.3E-07 41.4 2.0 26 67-92 27-52 (223)
496 1mky_A Probable GTP-binding pr 94.5 0.072 2.5E-06 42.7 6.2 48 45-92 147-203 (439)
497 3ez2_A Plasmid partition prote 94.5 0.053 1.8E-06 42.8 5.2 28 67-94 106-134 (398)
498 2wjy_A Regulator of nonsense t 94.5 0.11 3.7E-06 45.2 7.5 35 70-104 372-406 (800)
499 1t9h_A YLOQ, probable GTPase E 94.5 0.011 3.7E-07 45.8 1.1 22 70-91 174-195 (307)
500 3b5x_A Lipid A export ATP-bind 94.4 0.021 7.3E-07 47.5 3.0 23 70-92 370-392 (582)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.52 E-value=2.9e-14 Score=118.65 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHHhhcC-CCCeEEEEEEccCCCchHHHHHHHHH----HhhccCCcEEEEcccccccch--hhHHHHHHH
Q 032234 49 VGVERHIKQTEPLLCTG-SAGVYILGIWGIGGIGKTTIADAVFN----KISEHFEGSYFAHNVRDAEET--DRIKDLQKQ 121 (144)
Q Consensus 49 vGr~~~~~~l~~~l~~~-~~~~~~i~I~G~gGiGKTtLa~~v~~----~~~~~f~~~~~v~~~~~~s~~--~~~~~l~~~ 121 (144)
+||+.+++++.++|... ....++|+|+||||+||||||+.+|+ ++..+|+.++|++ +++. +++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 59999999999988644 44689999999999999999999997 5788999999997 6655 489999999
Q ss_pred HHHHhhCC
Q 032234 122 LLYELLND 129 (144)
Q Consensus 122 ll~~l~~~ 129 (144)
++..+...
T Consensus 207 il~~l~~~ 214 (549)
T 2a5y_B 207 ILLMLKSE 214 (549)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcC
Confidence 99998865
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.32 E-value=5.5e-12 Score=111.41 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=64.1
Q ss_pred cCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH---hhccCC-cEEEEcccccccc--hhh
Q 032234 41 FQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK---ISEHFE-GSYFAHNVRDAEE--TDR 114 (144)
Q Consensus 41 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~---~~~~f~-~~~~v~~~~~~s~--~~~ 114 (144)
.|.....|+||+.++++|.++|...+..+++++|+||||+||||||..+|++ ...+|. ..+|+. ++. ...
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECCcCchH
Confidence 4445578999999999999998766677899999999999999999999986 345564 566887 544 344
Q ss_pred HHHHHHHHHHHhhCC
Q 032234 115 IKDLQKQLLYELLND 129 (144)
Q Consensus 115 ~~~l~~~ll~~l~~~ 129 (144)
+......++..+...
T Consensus 195 ~~~~~~~~~~~l~~~ 209 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQE 209 (1249)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhh
Confidence 455556666666543
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.20 E-value=3.4e-11 Score=100.14 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=53.8
Q ss_pred cCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh---hccCC-cEEEEc
Q 032234 41 FQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI---SEHFE-GSYFAH 104 (144)
Q Consensus 41 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~---~~~f~-~~~~v~ 104 (144)
.|.....+|||+.+++.+..++.......++++|+||||+||||||..++++. ..+|. .++|+.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~ 186 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 186 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE
Confidence 34456789999999999999986545568899999999999999999999853 66795 788887
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.18 E-value=4.6e-11 Score=105.88 Aligned_cols=74 Identities=16% Similarity=0.029 Sum_probs=60.3
Q ss_pred CccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHH--HhhccCCc-EEEEcccccccchhhHHHHHHHHH
Q 032234 47 DLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFN--KISEHFEG-SYFAHNVRDAEETDRIKDLQKQLL 123 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~--~~~~~f~~-~~~v~~~~~~s~~~~~~~l~~~ll 123 (144)
..+||+.+++.|.++|... +..++|+|+||||+||||||..+|+ ++..+|+. ++|+. +++.++...+...++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHH
Confidence 3599999999999988643 3478999999999999999999997 46788986 88998 776666666666665
Q ss_pred HH
Q 032234 124 YE 125 (144)
Q Consensus 124 ~~ 125 (144)
..
T Consensus 204 ~l 205 (1221)
T 1vt4_I 204 KL 205 (1221)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.71 E-value=3.3e-08 Score=78.12 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCccchHHHHHHHHHHh-hc--CC--CCeEEEEE--EccCCCchHHHHHHHHHHhhcc-----CC-cEEEEcccccccc
Q 032234 45 NKDLVGVERHIKQTEPLL-CT--GS--AGVYILGI--WGIGGIGKTTIADAVFNKISEH-----FE-GSYFAHNVRDAEE 111 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l-~~--~~--~~~~~i~I--~G~gGiGKTtLa~~v~~~~~~~-----f~-~~~~v~~~~~~s~ 111 (144)
+..++||+.+++.+..++ .. .. .....+.| +|++|+|||||++.+++..... |. ..+|+. ...
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFN 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGG
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCC
Confidence 378999999999998877 42 12 23345555 9999999999999999976543 22 345665 223
Q ss_pred hhhHHHHHHHHHHHh
Q 032234 112 TDRIKDLQKQLLYEL 126 (144)
Q Consensus 112 ~~~~~~l~~~ll~~l 126 (144)
..+...+...++..+
T Consensus 97 ~~~~~~~~~~l~~~l 111 (412)
T 1w5s_A 97 APNLYTILSLIVRQT 111 (412)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 334555555555554
No 6
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.70 E-value=4.5e-08 Score=68.69 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=39.9
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|++..++.+..++.. .....+.|+|++|+||||||+.+++.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6799999999999888753 33456789999999999999999997643
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.69 E-value=5.9e-08 Score=76.06 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCccchHHHHHHHHHHhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHhhcc--------CCcEEEEcccccccchh-h
Q 032234 46 KDLVGVERHIKQTEPLLCT--GSAGVYILGIWGIGGIGKTTIADAVFNKISEH--------FEGSYFAHNVRDAEETD-R 114 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~--------f~~~~~v~~~~~~s~~~-~ 114 (144)
.+++||+.+++.+..++.. .....+.+.|+|++|+||||||+.+++.+... ....+|+. .+... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCC
Confidence 6799999999998877753 23445689999999999999999999976443 23455554 22223 4
Q ss_pred HHHHHHHHHHHh
Q 032234 115 IKDLQKQLLYEL 126 (144)
Q Consensus 115 ~~~l~~~ll~~l 126 (144)
...+...++..+
T Consensus 96 ~~~~~~~l~~~l 107 (384)
T 2qby_B 96 PQAVLSSLAGKL 107 (384)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444555555544
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.66 E-value=7.2e-08 Score=75.24 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=41.9
Q ss_pred CCccchHHHHHHHHHHhhcC--CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTG--SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++||+.+++.+..++... ......+.|+|++|+||||||+.+++....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999998887432 345668889999999999999999997644
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.65 E-value=7e-08 Score=74.33 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=45.9
Q ss_pred cccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 39 ETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 39 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
+.++..+..++||+.+++.+.+++... +++.|+|++|+|||||++.+++... .+|+.
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~ 61 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID 61 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE
Confidence 344455678999999999999888642 6889999999999999999988752 55664
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.64 E-value=4.3e-08 Score=76.39 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=46.8
Q ss_pred CCCccchHHHHHHHHHHhhcC--CCCeEEEEEEccCCCchHHHHHHHHHHhhccC---CcEEEEc
Q 032234 45 NKDLVGVERHIKQTEPLLCTG--SAGVYILGIWGIGGIGKTTIADAVFNKISEHF---EGSYFAH 104 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f---~~~~~v~ 104 (144)
+..++||+.+++.+..++... ......+.|+|++|+|||||++.+++.....+ ...+|+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 478999999999998887532 34456888999999999999999999876553 2445554
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=3.9e-07 Score=71.26 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=52.5
Q ss_pred CCccchHHHHHHHHHHhhc----CCCCeEEEEEEccCCCchHHHHHHHHHHhhccC-CcEEEEcccccccchhhHHHHHH
Q 032234 46 KDLVGVERHIKQTEPLLCT----GSAGVYILGIWGIGGIGKTTIADAVFNKISEHF-EGSYFAHNVRDAEETDRIKDLQK 120 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~v~~~~~~s~~~~~~~l~~ 120 (144)
.+++||+.+++.+..++.. .....+.+.|+|++|+|||||++.+++...... ...+|+. .+...+...+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHHH
Confidence 6799999999998887753 222334889999999999999999999876542 3445554 222233444444
Q ss_pred HHHHHh
Q 032234 121 QLLYEL 126 (144)
Q Consensus 121 ~ll~~l 126 (144)
.++..+
T Consensus 93 ~l~~~l 98 (389)
T 1fnn_A 93 EIARSL 98 (389)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444443
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.55 E-value=2.6e-07 Score=71.22 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=45.1
Q ss_pred cccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 39 ETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 39 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
+.++..+..++||+.+++.+.. +.. +++.|+|++|+|||||+..+.+.... ..+|+.
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~ 62 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD 62 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE
Confidence 3444556789999999999988 742 58999999999999999999987643 246665
No 13
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.44 E-value=3.3e-07 Score=64.20 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|++..++.+...+.. .....+.|+|++|+||||||+.+++....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6799999999999888743 33456689999999999999999997643
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.42 E-value=3.9e-07 Score=65.23 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=40.0
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+++|++..++.+..++... ....+.|+|++|+|||++|+.+++.+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 67999999999999888643 23348899999999999999999976433
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.39 E-value=6.7e-07 Score=64.60 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=40.3
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|++..++.+..++.... ..+.+.|+|++|+||||||+.+++....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 679999999999988886432 2347889999999999999999987643
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.31 E-value=6.5e-07 Score=70.57 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHhhcccccCCCCCCccchHHHHHHHHHHhhc----------CCCCeEEEEEEccCCCchHHHHHHHHH
Q 032234 22 DSELVEVIANEVLKRLEETFQSHNKDLVGVERHIKQTEPLLCT----------GSAGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 22 ~~~~i~~iv~~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
+...++.+...+..+.++ ..-.+++|.+..++.+..++.. .....+.+.++|++|+|||+||+.+++
T Consensus 63 ~~~~~~~i~~~i~~~~~~---~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPP---VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCSCC---CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCCC---CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344555555555444332 2236799999999888776531 112356788999999999999999998
Q ss_pred Hhhc
Q 032234 92 KISE 95 (144)
Q Consensus 92 ~~~~ 95 (144)
....
T Consensus 140 ~~~~ 143 (357)
T 3d8b_A 140 QSGA 143 (357)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7643
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.25 E-value=7.4e-07 Score=69.04 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHhhcccccCCCCCCccchHHHHHHHHHHhhcC---CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 32 EVLKRLEETFQSHNKDLVGVERHIKQTEPLLCTG---SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 32 ~v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+..++.+..+ .+++|++..++.+..++... ......+-|+|++|+|||+||+.+++.....
T Consensus 18 ~~~~~~~p~~~---~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 18 TYETSLRPSNF---DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp -----CCCCSG---GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred hhhhccCCCCH---HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34455555544 78999999999888877532 3345567899999999999999999875443
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=2.4e-06 Score=65.23 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=44.8
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+.++.+|..+ .+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++.+..
T Consensus 15 ~~~k~~p~~~---~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 15 WVEKYRPQRL---DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp HHHHTCCCST---TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred hhhccCCCCH---HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3445555444 67999999999999888643 3334889999999999999999997643
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.22 E-value=4e-06 Score=65.60 Aligned_cols=78 Identities=9% Similarity=0.083 Sum_probs=52.3
Q ss_pred ccchHHHHHHHHHHhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHhhccC-----C--cEEEEcccccccchhhHHHH
Q 032234 48 LVGVERHIKQTEPLLCT--GSAGVYILGIWGIGGIGKTTIADAVFNKISEHF-----E--GSYFAHNVRDAEETDRIKDL 118 (144)
Q Consensus 48 ~vGr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-----~--~~~~v~~~~~~s~~~~~~~l 118 (144)
+.||+++.+.+...|.. .......+-|+|++|+|||++++.+++.+.... . ..+.+..+ ...+...+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~~~ 97 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--HHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHHHH
Confidence 88999999998877643 244567888999999999999999999875421 1 23344322 22344455
Q ss_pred HHHHHHHhhCC
Q 032234 119 QKQLLYELLND 129 (144)
Q Consensus 119 ~~~ll~~l~~~ 129 (144)
...|++++.+.
T Consensus 98 ~~~I~~~L~g~ 108 (318)
T 3te6_A 98 YEKIWFAISKE 108 (318)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhcCC
Confidence 66666666544
No 20
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.20 E-value=2.1e-06 Score=65.31 Aligned_cols=52 Identities=25% Similarity=0.239 Sum_probs=39.7
Q ss_pred CCCccchHHHHHHHHHHhhcC----------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 45 NKDLVGVERHIKQTEPLLCTG----------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~~----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
-.+++|.+..++.+..++... ....+.+.++|++|+||||+|+.+++.....
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 367999999998887765320 1124578899999999999999999876433
No 21
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=3e-06 Score=64.61 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=39.7
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 67999999999999888643 2333889999999999999999997643
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=2.5e-06 Score=65.99 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=43.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+..+++|..+ .+++|++..++.+..++... ....+.++|++|+||||+|+.+++.+.
T Consensus 27 ~~~k~~p~~~---~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 27 WVEKYRPKNL---DEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTCCSST---TTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCH---HHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445555444 67999999999998888533 223378999999999999999998754
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=2.6e-06 Score=64.31 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=40.4
Q ss_pred CCCCccchHHHHHHHHHHhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 44 HNKDLVGVERHIKQTEPLLCTG-----------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 44 ~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.-.+++|.+..++.+...+... ......+-++|++|+|||+||+.+++.....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3467999999999887765321 1234568899999999999999999876443
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.07 E-value=4.8e-06 Score=67.83 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=45.0
Q ss_pred HHhhcccccCCCCCCccchHHHH---HHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 33 VLKRLEETFQSHNKDLVGVERHI---KQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~---~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
+..+++|..+ .+++|.+..+ ..+...+... ....+.+||++|+||||||+.+++.....|
T Consensus 16 la~r~rP~~l---~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f 78 (447)
T 3pvs_A 16 LAARMRPENL---AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADV 78 (447)
T ss_dssp HHHHTCCCST---TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred hHHHhCCCCH---HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4445555544 7899999877 5666666533 347788999999999999999999875544
No 25
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.05 E-value=3.3e-06 Score=64.20 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=38.4
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|++..++.+..++.. ...+.+-++|++|+||||+|+.+++.+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhC--CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 6799999999999888853 233348899999999999999999875
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=5.6e-06 Score=68.32 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=44.6
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCC---------------CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGS---------------AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~---------------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++.+|..+ .+++|++..++.+..++.... ...+.+-++|++|+||||+|+.+++..
T Consensus 29 W~ekyrP~~~---~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 29 WTVKYAPTNL---QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp HHHHTCCSSG---GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccccCCCCH---HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3445555444 779999999999998885310 134688899999999999999999976
No 27
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.05 E-value=2.8e-06 Score=58.48 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=33.9
Q ss_pred CccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 47 DLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+++|+...++.+.+.+..-......+-|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57888888888877664322222346799999999999999999853
No 28
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.02 E-value=8.2e-06 Score=63.52 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=42.9
Q ss_pred hhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 35 KRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 35 ~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++.+|..+ .+++|++..++.+...+.... ..+.+.++|++|+||||+|+.+++.+.
T Consensus 8 ~k~rp~~~---~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 8 RKWRPQTF---ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHTCCCST---TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HhhCCCch---hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444443 679999999999988886432 234678999999999999999998764
No 29
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.02 E-value=2.7e-06 Score=65.21 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=39.1
Q ss_pred CCccchHHHHHHHHHHhhc---CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT---GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|++..++.+..++.. .......+.|+|++|+|||++|+.+++....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7899999988888777642 1223456789999999999999999987643
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.02 E-value=6.2e-06 Score=61.25 Aligned_cols=51 Identities=22% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCccchHHHHHHHHHHhhc--CC--------CCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT--GS--------AGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~~--------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+++|.+..++.+.+++.. .. ...+.+-++|++|+|||++|+.+++.....
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789998888777665421 11 234567799999999999999999976443
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.01 E-value=9.4e-06 Score=62.45 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.++.+|..+ .+++|.+..++.+..++... ...+++-++|++|+||||+|+.+++.+.
T Consensus 16 ~~~k~rP~~~---~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 16 LEQKYRPSTI---DECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp HHHHSCCCST---TTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHHhhCCCCH---HHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 4445555554 78999999999999888632 2345677788999999999999998764
No 32
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.00 E-value=1.6e-05 Score=57.11 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCccchH----HHHHHHHHHhhcCCCC--eEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 46 KDLVGVE----RHIKQTEPLLCTGSAG--VYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 46 ~~~vGr~----~~~~~l~~~l~~~~~~--~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.++++.. ..++.+..++...... ...+.|+|++|+||||||+.+++.........+|+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4566543 2344455555433221 267889999999999999999998765544555554
No 33
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=4.6e-06 Score=64.75 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=41.6
Q ss_pred HhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 34 LKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.+|..+ .+++|.+..++.+..++........ +.++|++|+||||+++.++..+
T Consensus 5 ~~kyrP~~~---~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 5 VDKYRPKSL---NALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTTTCCCSG---GGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred hhccCCCCH---HHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 345555544 6799999988888887722222233 8899999999999999998854
No 34
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.96 E-value=6.2e-06 Score=64.34 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=36.9
Q ss_pred CCccchHHHHHHHHHHhhcC---CCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTG---SAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++|.+..++.+...+... ......+.++|++|+||||||+.+++.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 67889887777776555321 2334678999999999999999999876
No 35
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.95 E-value=1.2e-05 Score=61.85 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=37.8
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|.+..++.+..++.. .-.....+.++|++|+||||||+.+++...
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 5689999888887766531 113345788999999999999999998754
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=8.7e-06 Score=63.34 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=42.1
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++++|..+ .+++|.+..++.+...+... .++.+.++|++|+||||+|+.++..+
T Consensus 15 ~~~k~rp~~~---~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 15 WVEKYRPETL---DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHTCCSSG---GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hHHHhCCCcH---HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555544 66889988888888777533 33348899999999999999998865
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.95 E-value=1.1e-05 Score=62.44 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=38.7
Q ss_pred CCCccchHHHHHHHHHHhh----------cCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 45 NKDLVGVERHIKQTEPLLC----------TGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~----------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
-.+++|.+..++.+..++. ......+-+-++|++|+|||+||+++++....
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 3679999999988877652 11122456889999999999999999987543
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.94 E-value=8.8e-06 Score=66.44 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|++..++.+...+... ....+-++|++|+|||++|+.++..+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999998888542 233457999999999999999999864
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.93 E-value=3.1e-05 Score=56.18 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=34.0
Q ss_pred CCccch---HHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGV---ERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr---~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|. +..++.+..++... ....+.|+|++|+||||||+.+++....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567763 34555566665432 4567889999999999999999986543
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.90 E-value=1.7e-05 Score=61.86 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=37.6
Q ss_pred CCccchHHHHHHHHH---HhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEP---LLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~---~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|++..++.+.. .+.......+.+-++|++|+|||++|+.+++.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 579999988776443 34333223357889999999999999999998754
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.88 E-value=1.2e-05 Score=63.35 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=37.7
Q ss_pred CCccchHHHHHHHHHHhhc----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT----------GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|.+..++.+...+.. .....+-+.++|++|+|||+||+.+++....
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 6799999988888776521 0112345789999999999999999986543
No 42
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.85 E-value=1.4e-05 Score=60.91 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=36.3
Q ss_pred CccchHHHHHHHHHHhhcC-------------CCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 47 DLVGVERHIKQTEPLLCTG-------------SAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~-------------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+++|.+..++.+..++..- ......+-++|++|+|||++|+.+++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5889988888877654310 23345788999999999999999888654
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=2e-05 Score=58.71 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCccchHHHHHHHHHHhhc--C--------CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT--G--------SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~--------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|.+..++.+..++.. . ....+-+.++|++|+||||||+.+++....
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 6789998887776554321 1 012345789999999999999999987643
No 44
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.83 E-value=1.2e-05 Score=60.83 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=37.1
Q ss_pred CCccchHHHHHHHHHHhhc------------CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT------------GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~------------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++|++..++.+...+.. .......+-++|++|+|||++|+.+++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3588999888888766532 0112346779999999999999999987643
No 45
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.81 E-value=1.2e-05 Score=60.22 Aligned_cols=51 Identities=25% Similarity=0.225 Sum_probs=36.7
Q ss_pred CCccchHHHHHHHHHHhhc----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT----------GSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+++|.+..++.+..++.. .....+-+.++|++|+|||+||+.+++.....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 6789998888777665431 11112336789999999999999999976443
No 46
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=3e-05 Score=54.71 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCC-CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 52 ERHIKQTEPLLCTGS-AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 52 ~~~~~~l~~~l~~~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...++.+..++..-. ..-..+.++|++|+|||||++.+++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444444443211 2246789999999999999999998764
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.78 E-value=1.4e-05 Score=64.81 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCccchHHHHHHHHHHhhc----------CCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCT----------GSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.+..++.+...+.. .....+.+.++|++|+|||+||+.+++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 6799999988888766521 01234678899999999999999999976
No 48
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.75 E-value=4.8e-06 Score=57.25 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=31.5
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-+++|....++.+.+.+..-......+-|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35788888888877665421112234668999999999999998764
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.75 E-value=3.9e-05 Score=59.60 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCccchHHHHHHHHHHhhc----------CCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCT----------GSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.|.+..++.+...+.. .....+.+-++|++|+|||+||+.+++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 6788998888887665421 01224678899999999999999999876
No 50
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.74 E-value=3e-05 Score=61.48 Aligned_cols=50 Identities=24% Similarity=0.273 Sum_probs=38.5
Q ss_pred CCccchHHHHHHHHHHhhc---C-------CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT---G-------SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~---~-------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|.+..++.+..++.. . ....+.+-|+|++|+|||+||+.+++....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 6799999999988776621 0 112467889999999999999999887543
No 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.74 E-value=3.1e-05 Score=60.76 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=35.3
Q ss_pred CccchHHHHHHHHHHhh-------------cCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 47 DLVGVERHIKQTEPLLC-------------TGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~-------------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888888887766552 0111345678999999999999999988653
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.72 E-value=3.1e-05 Score=66.49 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=38.5
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|++..++.+...+... ....+-++|++|+|||++|+.+++.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 56999999999998888532 23346799999999999999999986
No 53
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=5.1e-05 Score=61.76 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=37.8
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++.|.+..++.+...+.. .-...+-+-+||++|+|||+||+++++....
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5688999988887665421 1123567889999999999999999986543
No 54
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=4.8e-05 Score=61.75 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.++.|.+..++.+...+.. .-...+-+-+||++|+|||+||+++++....+|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 4688999988887664421 112356688999999999999999999765443
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.71 E-value=1.5e-05 Score=69.36 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=38.8
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|++..++.+...+... ..+.+.++|++|+||||||+.+++.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 56999999999998887532 234467899999999999999999763
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.71 E-value=4.4e-05 Score=58.04 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=37.1
Q ss_pred CccchHHHHHHHHHHhhcC------C-CCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 47 DLVGVERHIKQTEPLLCTG------S-AGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~------~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++|.+..++.+...+... . .....+.++|++|+||||+|+.++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 5789888888776655321 1 12457899999999999999999997644
No 57
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=4.9e-05 Score=61.81 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=38.4
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++.|.+..++.|...+.. .-...+-+-+||++|+|||+||+++++.....
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 5788999988888654311 11235678899999999999999999976543
No 58
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.70 E-value=3.4e-05 Score=57.71 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=33.0
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|....+..+.+.+..-......+-|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4578988888777655532112224567999999999999999998654
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.67 E-value=6.8e-05 Score=64.25 Aligned_cols=82 Identities=22% Similarity=0.322 Sum_probs=52.5
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc------CCcEEEEccccccc----chhhH
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH------FEGSYFAHNVRDAE----ETDRI 115 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~~~~~v~~~~~~s----~~~~~ 115 (144)
..++|++.+++.+...+... ....+.++|++|+||||+|+.+++.+... ....+|..++.... .....
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH
Confidence 46899999999998888532 34456799999999999999999976321 23444443332221 11234
Q ss_pred HHHHHHHHHHhhCC
Q 032234 116 KDLQKQLLYELLND 129 (144)
Q Consensus 116 ~~l~~~ll~~l~~~ 129 (144)
....+.++..+...
T Consensus 264 e~~l~~~~~~~~~~ 277 (758)
T 1r6b_X 264 EKRFKALLKQLEQD 277 (758)
T ss_dssp HHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 44555666665543
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=5.4e-05 Score=61.02 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=37.3
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++.|.+..+++|...+.. .-...+-+-+||++|+|||.||+++++....
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 5688999988888664421 1123566789999999999999999986543
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.64 E-value=0.00013 Score=56.09 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 56 KQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 56 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+..++.........+.|+|++|+||||||+.+++....
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3344444332223567889999999999999999997643
No 62
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=7.5e-05 Score=61.18 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=38.0
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++.|.+..++.|.+.+.. .-...+-|-++|++|+|||+||+++++....
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 4788999988888664321 1234667789999999999999999986543
No 63
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.61 E-value=8.5e-05 Score=55.81 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHH-------Hhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEP-------LLCT-GSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~-------~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++|.....+.+.. .+.. .......+-++|++|+|||+||+.+++.....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 457787766555543 2321 23456788899999999999999999975443
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.60 E-value=5.2e-05 Score=58.49 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHhhcccccCCCCCCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 33 VLKRLEETFQSHNKDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 33 v~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+..++.+... ..++|++..+..+...+... ..+-++|++|+|||+||+.+++...
T Consensus 17 ~~~~~~~~~~---~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 17 KIKEVIDEVG---KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHT---TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444433 57899998888876665432 3577899999999999999988643
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.60 E-value=7.9e-05 Score=60.44 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCccchHHHHHHHHHHh---hcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLL---CTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l---~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|.+..++.+..++ .......+-+-++|++|+|||+||+.+++.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 67999998877655443 22222335678999999999999999999875
No 66
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.57 E-value=5.3e-05 Score=62.34 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=38.7
Q ss_pred CCccchHHHHHHHHHHhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----------SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|.+..++.+..++... .....-+-|+|++|+|||++|+++++....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 56899999999887766421 233456789999999999999999887543
No 67
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.54 E-value=5.7e-05 Score=56.13 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=33.4
Q ss_pred CCccchHHHHHHHHHHhhc--C-------C-CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCT--G-------S-AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~-------~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|.+..+..+..+... . + .-.+-+.++|++|+|||||++.++....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678887766665543321 0 0 1112388999999999999999988654
No 68
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.53 E-value=0.0001 Score=57.95 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+-++|++|+|||++|+.+++....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999987643
No 69
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.51 E-value=5.4e-05 Score=53.01 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.+.|++|+||||+|+.+...+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4788999999999999999998754
No 70
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=6.1e-05 Score=52.18 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999988754
No 71
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.51 E-value=0.00015 Score=58.65 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=25.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
...+.|+|++|+||||||+.+++.+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~ 158 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 66788999999999999999999876554
No 72
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.51 E-value=6e-05 Score=58.11 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..++|....+..+...+..-......+-|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35889888888887766432222345669999999999999999984
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.50 E-value=0.0001 Score=55.59 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=34.9
Q ss_pred CCCccchHHHHHHHHHHhhc--C-------C-CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 45 NKDLVGVERHIKQTEPLLCT--G-------S-AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~--~-------~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+++|.+..+..+..+... . + .-.+-+.|+|++|+|||||++.++....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 36789988877776554321 0 0 0112388999999999999999988654
No 74
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00015 Score=58.98 Aligned_cols=51 Identities=27% Similarity=0.313 Sum_probs=38.0
Q ss_pred CCccchHHHHHHHHHHhhc---C--------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT---G--------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~---~--------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++-|.+..++.|...+.. . -...+-|-+||++|+|||.||+++++.....
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 4678899988888664421 1 1235678899999999999999999865443
No 75
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.47 E-value=6.8e-05 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 543
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.47 E-value=8.2e-05 Score=56.97 Aligned_cols=30 Identities=40% Similarity=0.602 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
....+.+||++|+|||+||+.+++....+|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 346778999999999999999999765443
No 77
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.46 E-value=0.00019 Score=51.98 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..-.+++|.|+.|+|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 78
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.43 E-value=8.6e-05 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.|.++|++|+||||+|+.+...+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999988764
No 79
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.41 E-value=0.00048 Score=49.58 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 51 VERHIKQTEPLLCT-GSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 51 r~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++..++.+...+.. ......+++|.|+.|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455666555432 223457999999999999999999988654
No 80
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.41 E-value=0.00018 Score=59.04 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=36.5
Q ss_pred CCccchHHHHHHHHHHhhc--C--------CCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT--G--------SAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~--~--------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+++|.+..++++..++.. . ..-.+-+.++|++|+||||||+.+++.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 5688998887777665421 1 0113347799999999999999999875433
No 81
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=9.6e-05 Score=53.11 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...|.|+|++|+||||+++.+...+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 458899999999999999999987643
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.40 E-value=0.00024 Score=54.03 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=31.7
Q ss_pred CCccchHHHHHHHHHHhh---cC-------C-CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLC---TG-------S-AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~---~~-------~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++.|.+..++.+...+. .. + .-.+-+.++|++|+|||||++.++....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456777777666654321 00 0 1112389999999999999999988654
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=8.5e-05 Score=64.50 Aligned_cols=50 Identities=28% Similarity=0.366 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHHHhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 46 KDLVGVERHIKQTEPLLCT-----------GSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|.+..++.+..++.. .-.....+.++|++|+||||||+.++.....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5689999888888776542 1123457889999999999999999886543
No 84
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.38 E-value=0.00039 Score=53.68 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCC-CeEEEEEEccCCCchHHHHHHHHHHhh-ccCCcEEEE
Q 032234 54 HIKQTEPLLCTGSA-GVYILGIWGIGGIGKTTIADAVFNKIS-EHFEGSYFA 103 (144)
Q Consensus 54 ~~~~l~~~l~~~~~-~~~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~v 103 (144)
....+..++..... ....+-+||++|+|||+||.++++... ..-....++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 33444556653222 246778999999999999999999765 443334444
No 85
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.36 E-value=0.00025 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+|.|.|++|+||||+++.+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999997653
No 86
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.35 E-value=0.00034 Score=53.78 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=25.2
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.....+|+|.|+.|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345779999999999999999998886543
No 87
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.34 E-value=0.0001 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|+|.|++|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988654
No 88
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.34 E-value=0.00013 Score=50.67 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+..+|+|.|++|+||||+++.+...+.-
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999887643
No 89
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.33 E-value=0.00027 Score=56.08 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 49 VGVERHIKQTEPLLCT--GSAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 49 vGr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
++.+...+.+...+.. .......|.++|++|+||||+++.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3344445555444432 234567789999999999999999999766554
No 90
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.31 E-value=0.00016 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788999999999999999987
No 91
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.31 E-value=0.00015 Score=51.31 Aligned_cols=24 Identities=46% Similarity=0.452 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-.+++|.|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 358899999999999999999775
No 92
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.26 E-value=0.0002 Score=55.16 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=32.9
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|.+..+..+...+... ....+-++|++|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 56899987655543322211 122378999999999999999999654
No 93
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00022 Score=50.30 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|++|+||||+++.+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999988653
No 94
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.24 E-value=0.00027 Score=57.63 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=37.7
Q ss_pred CCccchHHHHHHHHHHhhcC------------CCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCTG------------SAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~------------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.+++|.+..++.+...+... ....+.|.++|++|+||||+|+.++......|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 46889888887775544110 11245688999999999999999999875554
No 95
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.24 E-value=0.00019 Score=50.98 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.|.|.|+.|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999987643
No 96
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.23 E-value=0.00014 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...|.|+|++|+||||+++.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998765
No 97
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.23 E-value=0.00021 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=22.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 98
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.21 E-value=0.0012 Score=51.32 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+++|+|++|+||||++..++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999998875543
No 99
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.21 E-value=0.0002 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.|.|.|++|+||||+|+.+...+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988764
No 100
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.20 E-value=0.0004 Score=49.78 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
..+|.|.|+.|+||||+++.+...+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999776543
No 101
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.20 E-value=0.00032 Score=57.90 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=35.3
Q ss_pred CCCccchHHHHHHHHHHhhc--CC--------CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 45 NKDLVGVERHIKQTEPLLCT--GS--------AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~--~~--------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-.+++|.+..+..+..+... .. .-.+-+.++|++|+||||||++++...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999887777655421 10 112348899999999999999998854
No 102
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.19 E-value=0.00021 Score=62.17 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=37.3
Q ss_pred CCccchHHHHHHHHHHhhc---CC--------CCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCT---GS--------AGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~---~~--------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++.|.+..+++|.+++.. .. ...+-|-++|++|+|||+||+++++....+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3577888888877665421 11 235678899999999999999998865443
No 103
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00028 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+|.|.|+.|+||||+++.+...+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 104
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.18 E-value=0.00028 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-.+++|.|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.00038 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-..+.|+|+.|+|||||++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999865
No 106
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.18 E-value=0.0002 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|+.|+||||+|+.+...+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 107
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.18 E-value=0.00018 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988654
No 108
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.18 E-value=0.00049 Score=48.60 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
-.+|.+.|++|+||||+++.+...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468899999999999999999987653
No 109
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.17 E-value=0.0005 Score=49.04 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+|.|.|++|+||||+|+.+...+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999876543
No 110
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00029 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..|.+.|++|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 111
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00031 Score=49.39 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 112
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00025 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998854
No 113
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.15 E-value=0.00026 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 478999999999999999998753
No 114
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.15 E-value=0.00024 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|++|+||||+|+.+.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988653
No 115
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.00029 Score=52.83 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4788999999999999999988653
No 116
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.14 E-value=0.0011 Score=46.72 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999987643
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.14 E-value=0.00067 Score=55.99 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=34.2
Q ss_pred CccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 47 DLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++|++..++.+...+... ..+-++|++|+|||+||+.+++.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 5889998888776655432 367799999999999999998754
No 118
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.14 E-value=0.0003 Score=50.49 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-.+++|.|+.|+|||||++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 119
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.14 E-value=0.00027 Score=50.08 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|++|+||||+|+.+.....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988654
No 120
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.14 E-value=0.00033 Score=50.05 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|.|.|++|+||||+++.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998764
No 121
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.14 E-value=0.00034 Score=52.11 Aligned_cols=28 Identities=14% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988654
No 122
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.13 E-value=0.00062 Score=50.59 Aligned_cols=26 Identities=19% Similarity=-0.033 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
....|.|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 123
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.13 E-value=0.00081 Score=57.69 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=36.3
Q ss_pred CCccchHHHHHHHHHHhhcCC-------CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGS-------AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|.+..++.+...+.... .....+-++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899988888766554211 123468899999999999999999865
No 124
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.12 E-value=0.0029 Score=48.82 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=26.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.++.|.|.+|+||||||..++......-..++|++
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 57888999999999999988765433225666664
No 125
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.12 E-value=0.00023 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|++|+||||+|+.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999988754
No 126
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.12 E-value=0.00021 Score=50.03 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=18.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|++|+||||+|+.+...+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999987654
No 127
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.12 E-value=0.00033 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.++++.|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 128
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.12 E-value=0.0013 Score=46.12 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|+|.|+.|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 129
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.12 E-value=0.00037 Score=49.51 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
....+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998774
No 130
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.11 E-value=0.00033 Score=49.16 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|++|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 131
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.11 E-value=0.00035 Score=48.28 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.|.|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988654
No 132
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.11 E-value=0.00033 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|+|.|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987643
No 133
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.10 E-value=0.00032 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 488999999999999999998855
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.09 E-value=0.0022 Score=50.16 Aligned_cols=28 Identities=29% Similarity=0.416 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+++++|+.|+||||++..+......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999886543
No 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.09 E-value=0.00026 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999987654
No 136
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.00034 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999977
No 137
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.07 E-value=0.00033 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...|.|.|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999887
No 138
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.06 E-value=0.0004 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...|.|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988653
No 139
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.06 E-value=0.00062 Score=50.23 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 55 IKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 55 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+..+..++.. -+..+.+.++|++|+||||+|.++++.+.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556666642 22345789999999999999999998654
No 140
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.05 E-value=0.00064 Score=48.64 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=24.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..+|.|.|+.|+||||+++.+...+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876543
No 141
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.04 E-value=0.00042 Score=49.82 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...+++|.|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 142
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.04 E-value=0.0018 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+++++|+.|+||||++..++....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988654
No 143
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.0004 Score=50.47 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..|.+.|++|+||||+|+.+...+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788999999999999999988653
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.02 E-value=0.0038 Score=48.29 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcC------CCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 54 HIKQTEPLLCTG------SAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 54 ~~~~l~~~l~~~------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+.+.+++... .....++.|+|++|+||||++..++..+..
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 345555665422 123579999999999999999999886543
No 145
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00043 Score=49.62 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 146
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.01 E-value=0.00032 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..+|.|.|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999998865
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.01 E-value=0.0004 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+++|.|+.|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35889999999999999999988653
No 148
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.00 E-value=0.00045 Score=49.23 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988653
No 149
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.99 E-value=0.00048 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..+++|.|+.|+|||||++.+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 150
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.99 E-value=0.00084 Score=47.79 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=24.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++++|.|+.|+|||||+..+...+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999998876544
No 151
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.98 E-value=0.0022 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
-.+++|+|..|+|||||+..+...+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 469999999999999999999886543
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.97 E-value=0.00047 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-.+|+|.|+.|+||||+++.+..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999854
No 153
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.96 E-value=0.00052 Score=49.32 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|+|.|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998753
No 154
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0024 Score=50.58 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
-.+++++|+.|+||||++..++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999886543
No 155
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.94 E-value=0.00042 Score=48.75 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.0
Q ss_pred EEEEEEccCCCchHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAV 89 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v 89 (144)
.+++++|+.|+|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58899999999999999953
No 156
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.92 E-value=0.00064 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.+.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999988743
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.92 E-value=0.0011 Score=55.54 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCccchHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 46 KDLVGVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+++|.+..++.+...+... ..+.|+|++|+||||||+.++..+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 46899988887777666432 478899999999999999999966443
No 158
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.91 E-value=0.00064 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 159
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.91 E-value=0.00038 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.536 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|.|.|+.|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 160
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.91 E-value=0.00085 Score=48.48 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+..+|+|.|+.|+||||+++.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998763
No 161
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.91 E-value=0.00069 Score=58.00 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=36.5
Q ss_pred CCccchHHHHHHHHHHhhcC-------CCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 46 KDLVGVERHIKQTEPLLCTG-------SAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|.+..++.+...+... ......+-++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 35789888888776655321 11234788999999999999999998763
No 162
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.90 E-value=0.00055 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998765
No 163
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.88 E-value=0.00047 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+.|.|.|++|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3577999999999999999887643
No 164
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.88 E-value=0.00072 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+|+|.|+.|+||||+++.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988643
No 165
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.88 E-value=0.0022 Score=49.26 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...+++++|++|+||||++..+.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999988654
No 166
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.87 E-value=0.00054 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...|.|.|++|+||||+++.+...+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999988764
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.87 E-value=0.00068 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997754
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.86 E-value=0.0011 Score=47.71 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=25.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
.++.|.|++|+|||||+..+.......-...+|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5788999999999999999987543322234444
No 169
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.86 E-value=0.0017 Score=50.64 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....+++|.|+.|+|||||++.+...+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577999999999999999999877654
No 170
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.0012 Score=54.88 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=34.7
Q ss_pred CccchHHHHHHHHHHhh----cCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 47 DLVGVERHIKQTEPLLC----TGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
+++|.+.....+...+. .....-..+.++|++|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 36787776666543321 111234588999999999999999999876443
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.86 E-value=0.003 Score=49.47 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=27.6
Q ss_pred HHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 57 QTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 57 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+...+........+|+|.|.+|+|||||+..+....
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333333334567899999999999999999987754
No 172
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.85 E-value=0.00067 Score=50.27 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.-.+++|.|+.|+|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 173
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.85 E-value=0.0014 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.+....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998743
No 174
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00053 Score=49.39 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 175
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.84 E-value=0.009 Score=48.36 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++|.++|.+|+||||++..+...+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999988765543
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.0019 Score=46.24 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=24.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.++.|+|++|+|||||+..+.. ..-...+|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 4889999999999999999887 2223455554
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.83 E-value=0.0012 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.284 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+++|.|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5889999999999999998874
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.83 E-value=0.00075 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999999998754
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00057 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..|.|.|+.|+||||+++.+...+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999886644
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.00099 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|.+.|+.|+||||+++.+...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998865
No 181
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.79 E-value=0.0013 Score=47.53 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 55 IKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 55 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+.+...+. ......|.|+|.+|+|||||+..+....
T Consensus 26 a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344444442 2346788999999999999999988764
No 182
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.78 E-value=0.0011 Score=47.98 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+|.|.|+.|+||||+++.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999999988654
No 183
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.78 E-value=0.00086 Score=52.01 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....+++|.|+.|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467999999999999999999988654
No 184
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.78 E-value=0.0016 Score=49.60 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 58 TEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 58 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
+..|+.........+.++|++|+|||++|.++.+.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44455433234567999999999999999999985
No 185
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.78 E-value=0.0067 Score=49.19 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
...+|.++|++|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999988765443
No 186
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.78 E-value=0.0018 Score=46.53 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 50 GVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 50 Gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
+.+...+.+...+. ....+.+.++|.+|+|||||+..+......
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 13 ENKRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp HHHHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred hcHHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 33444444544442 224688999999999999999998876533
No 187
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.77 E-value=0.00084 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..|.|.|+.|+||||+++.+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998876
No 188
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.76 E-value=0.0012 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...++|-|.|++|+||+|.|+.+..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998865
No 189
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.76 E-value=0.0011 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|.+.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688899999999999999998765
No 190
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.76 E-value=0.0035 Score=49.58 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcccccCCCC-----CC-ccchHHHHHHHHHHhh-cCCCCeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 23 SELVEVIANEVLKRLEETFQSHN-----KD-LVGVERHIKQTEPLLC-TGSAGVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 23 ~~~i~~iv~~v~~~~~~~~~~~~-----~~-~vGr~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+.++..+.++.+.+....+... .. ......-...|-.+|. ..-..-.++.|+|++|+|||||+..+......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 8 KSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp HHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34566666666666543322111 11 1112222344555553 11122368899999999999999998876543
Q ss_pred cCCcEEEEc
Q 032234 96 HFEGSYFAH 104 (144)
Q Consensus 96 ~f~~~~~v~ 104 (144)
.=..++|+.
T Consensus 88 ~gg~VlyId 96 (356)
T 3hr8_A 88 MGGVAAFID 96 (356)
T ss_dssp TTCCEEEEE
T ss_pred cCCeEEEEe
Confidence 323344553
No 191
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.74 E-value=0.0011 Score=50.49 Aligned_cols=24 Identities=46% Similarity=0.915 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 192
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.74 E-value=0.0032 Score=45.73 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=26.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc------cCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE------HFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~------~f~~~~~v~ 104 (144)
.++.|+|++|+|||||+..+...... .-...+|+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 58899999999999999998875322 124566665
No 193
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.74 E-value=0.00089 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.+.|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56889999999999999999988654
No 194
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.73 E-value=0.00095 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..|.+.|++|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999988653
No 195
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.73 E-value=0.00099 Score=48.91 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...|.+.|++|+||||+|+.+...+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999988764
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.72 E-value=0.00077 Score=49.28 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 197
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.71 E-value=0.001 Score=51.64 Aligned_cols=28 Identities=32% Similarity=0.663 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
++.++|.|+|-||+||||.+..+.-.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA 73 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS 73 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH
Confidence 3579999999999999999987776543
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.0018 Score=47.10 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=24.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.++.|.|++|+|||||+..++......=...+|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 47889999999999999877664433223445553
No 199
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.70 E-value=0.0011 Score=47.83 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 200
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.67 E-value=0.0013 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.66 E-value=0.0011 Score=48.27 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-+++.|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46889999999999999999987643
No 202
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0013 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 203
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.65 E-value=0.0034 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|.|+|++|+||||+|+.+..+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999987754
No 204
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.65 E-value=0.0042 Score=45.82 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
-..|.|.|+.|+||||+++.+...+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468899999999999999999997754
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.64 E-value=0.0012 Score=49.20 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|++|+||||+++.+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987653
No 206
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.64 E-value=0.0021 Score=48.55 Aligned_cols=27 Identities=22% Similarity=0.355 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
-.+++|+|+.|+|||||.+.+...+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 358999999999999999998875543
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.63 E-value=0.0023 Score=49.90 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.....++++.|.+|+|||||+..+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4557889999999999999999987654
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.63 E-value=0.004 Score=49.35 Aligned_cols=99 Identities=19% Similarity=0.133 Sum_probs=45.9
Q ss_pred cccccCceeeeccccccchHHHHHHHHHHHHhhcccccCCC-----CCCccchHHHHHHHHHHhh-cCCCCeEEEEEEcc
Q 032234 4 KKKAAPSVVHDFKVRESPDSELVEVIANEVLKRLEETFQSH-----NKDLVGVERHIKQTEPLLC-TGSAGVYILGIWGI 77 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~~iv~~v~~~~~~~~~~~-----~~~~vGr~~~~~~l~~~l~-~~~~~~~~i~I~G~ 77 (144)
+|+++...++--. ..+-.+.++...+.+.+......... .....+...-...|-.+|. ..-..-.++-|+|.
T Consensus 5 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~ 82 (366)
T 1xp8_A 5 SKDATKEISAPTD--AKERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGP 82 (366)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEES
T ss_pred ccccccccCCCCC--HHHHHHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcC
Confidence 4556666555333 23344566777777766544322111 1112222222334444442 11112347788999
Q ss_pred CCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 78 GGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 78 gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
+|+||||||..+.......-..++|+.
T Consensus 83 pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 999999999988775543333556664
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.61 E-value=0.0026 Score=49.15 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+++|+|++|+||||++..++.....
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 569999999999999999999886543
No 210
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.60 E-value=0.0093 Score=48.19 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccCC-cEEEE
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHFE-GSYFA 103 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f~-~~~~v 103 (144)
.+.|.|.+|+||||++..+...+...-. ....+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 7889999999999999999887654433 34444
No 211
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.60 E-value=0.0078 Score=48.51 Aligned_cols=35 Identities=17% Similarity=-0.000 Sum_probs=26.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
.++.|.|.+|+||||||..++...... =..++|++
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 578899999999999999988865432 23566654
No 212
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.60 E-value=0.0045 Score=46.83 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=26.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCC-cEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFE-GSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~-~~~~v~ 104 (144)
.+++|.|++|+|||||+..++........ .++|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 48899999999999999999886654322 444543
No 213
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.59 E-value=0.0016 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.-.++++.|+.|+|||||.+.+....
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999998854
No 214
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.59 E-value=0.0014 Score=48.29 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|.|+.|+|||||.+.+.....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5889999999999999999988654
No 215
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.59 E-value=0.00077 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=15.9
Q ss_pred EEEEEEccCCCchHHHHHHHH-HH
Q 032234 70 YILGIWGIGGIGKTTIADAVF-NK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~-~~ 92 (144)
.+++|.|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 54
No 216
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.57 E-value=0.0033 Score=50.10 Aligned_cols=27 Identities=26% Similarity=0.111 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..-.+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998754
No 217
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.57 E-value=0.0015 Score=50.29 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....+++|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.55 E-value=0.0038 Score=54.37 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=36.3
Q ss_pred CccchHHHHHHHHHHhhcC-----C--CCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 47 DLVGVERHIKQTEPLLCTG-----S--AGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 47 ~~vGr~~~~~~l~~~l~~~-----~--~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++|.+..++.+...+... + .....+.++|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689988888876655321 1 1235788999999999999999999763
No 219
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.55 E-value=0.0016 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999874
No 220
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.54 E-value=0.004 Score=48.61 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.2
Q ss_pred CCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 65 GSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 65 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.-..-.+++|+|++|+|||||...+....
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33456799999999999999999998754
No 221
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.54 E-value=0.0017 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 222
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.53 E-value=0.005 Score=48.61 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhcccccCCCC-----CCccchHHHHHHHHHHhh-cCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 23 SELVEVIANEVLKRLEETFQSHN-----KDLVGVERHIKQTEPLLC-TGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 23 ~~~i~~iv~~v~~~~~~~~~~~~-----~~~vGr~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+.++...+.+.+......+... ....+...-...|-.+|. ..-..-.++.|+|.+|+||||||..+.......
T Consensus 11 ~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 11 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp HHHHHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34566666666665543322111 112222222334444442 111223588899999999999999888765433
Q ss_pred CCcEEEEc
Q 032234 97 FEGSYFAH 104 (144)
Q Consensus 97 f~~~~~v~ 104 (144)
=..++|+.
T Consensus 91 g~~vlyid 98 (356)
T 1u94_A 91 GKTCAFID 98 (356)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEe
Confidence 33556665
No 223
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.53 E-value=0.001 Score=51.03 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 224
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0015 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+++|+|+.|+|||||.+.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999988854
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.52 E-value=0.0063 Score=46.79 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..++.++|.+|+||||++..++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999998876543
No 226
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0018 Score=47.59 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|+|.|+.|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999988743
No 227
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.0019 Score=47.19 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+|.+.|++|+||+|.|..+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999998864
No 228
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.48 E-value=0.0064 Score=47.74 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=26.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.++.|.|.+|+||||||..++.....+=..++|++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47888999999999999998876544323455554
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.48 E-value=0.0033 Score=44.70 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++++|.|+.|+|||||+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999988654
No 230
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.47 E-value=0.0017 Score=50.78 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|+|+.|+||||||..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998754
No 231
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0033 Score=48.51 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 50 GVERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 50 Gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|.+..++.+...+.... .+.+-++|++|+||||+|..+.+.
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHh
Confidence 44556667777775433 678889999999999999999875
No 232
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.46 E-value=0.0011 Score=57.48 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCccchHHHHHHHHHHhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----------SAGVYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
.++.|.+..++.+...+... -.....+.++|++|+||||||+.++......|
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46788888888877665311 01234577999999999999999999765443
No 233
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.44 E-value=0.0084 Score=48.46 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=26.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
.++.|.|.+|+|||||+..++...... =..++|++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 478899999999999999988866543 23566654
No 234
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.44 E-value=0.0016 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.192 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998875
No 235
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.43 E-value=0.0094 Score=43.57 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..|.+-|+.|+||||++..+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 578899999999999999999987654
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.42 E-value=0.0019 Score=48.25 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.+..-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999998743
No 237
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.42 E-value=0.0015 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.41 E-value=0.0018 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999998763
No 239
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.0012 Score=46.81 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|+|..|+|||||+..+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999886543
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.38 E-value=0.0067 Score=46.86 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=26.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc------CCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH------FEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~~~~~v~ 104 (144)
.++.|+|.+|+||||||..+....... -..++|+.
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 588899999999999999888764322 23566765
No 241
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.33 E-value=0.014 Score=45.48 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=27.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc------cCCcEEEEc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE------HFEGSYFAH 104 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~------~f~~~~~v~ 104 (144)
-.++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 468889999999999999988876322 123566775
No 242
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.33 E-value=0.0023 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.32 E-value=0.0037 Score=49.14 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhcccccCCCC-----CCccchHHHHHHHHHHhh-cCCCCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 23 SELVEVIANEVLKRLEETFQSHN-----KDLVGVERHIKQTEPLLC-TGSAGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 23 ~~~i~~iv~~v~~~~~~~~~~~~-----~~~vGr~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+.++...+.+.+......+... ....+.......|-.+|. ..-..-.++.|+|.+|+||||||..+.......
T Consensus 9 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 9 EKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCCceeccccccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34566666666665543322111 111122222334444443 111223588999999999999999887654333
Q ss_pred CCcEEEEc
Q 032234 97 FEGSYFAH 104 (144)
Q Consensus 97 f~~~~~v~ 104 (144)
=..++|+.
T Consensus 89 g~~vlyi~ 96 (349)
T 2zr9_A 89 GGIAAFID 96 (349)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEE
Confidence 23445554
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.31 E-value=0.0019 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998743
No 245
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.31 E-value=0.0031 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999998874
No 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.30 E-value=0.0019 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998774
No 247
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.30 E-value=0.0017 Score=51.06 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|+.|+|||||+..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999998654
No 248
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.28 E-value=0.0025 Score=45.15 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...++|+|..|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998874
No 249
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.28 E-value=0.006 Score=44.94 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++.+.|.||+||||++..+...+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56778899999999999999987554
No 250
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.27 E-value=0.0025 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999884
No 251
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.27 E-value=0.002 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999774
No 252
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.26 E-value=0.0021 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999774
No 253
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.23 E-value=0.0029 Score=49.05 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.=.+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34688999999999999999998754
No 254
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.23 E-value=0.0025 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998763
No 255
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.23 E-value=0.0037 Score=42.11 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
+-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998763
No 256
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.22 E-value=0.0054 Score=44.56 Aligned_cols=35 Identities=29% Similarity=0.204 Sum_probs=24.7
Q ss_pred EEEEEEccCCCchHHHHHHHHH-HhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFN-KISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~-~~~~~f~~~~~v~ 104 (144)
.++-|.|.+|+|||+||..++. .....-...+|++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 4778999999999999987654 3433344555554
No 257
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.21 E-value=0.0024 Score=47.92 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=24.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
.+++|+|+.|+|||||.+.+..-.... ..+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 478999999999999999998755433 44444
No 258
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.21 E-value=0.0028 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.++.|+|++|+|||||+..+...+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999887543
No 259
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.21 E-value=0.0026 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999998763
No 260
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.21 E-value=0.0025 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999987754
No 261
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.21 E-value=0.0025 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999998773
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.21 E-value=0.0023 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998743
No 263
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.20 E-value=0.011 Score=48.00 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=26.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.++.|.|.+|+||||||..++......=..++|++
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 47888999999999999988876543323455554
No 264
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.19 E-value=0.0036 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
+++-|+|++|+||||||..+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45679999999999999998875
No 265
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.19 E-value=0.0023 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 57899999999999999998774
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.19 E-value=0.0024 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998774
No 267
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.19 E-value=0.0093 Score=44.17 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..|.+-|+.|+||||+++.+.+.+...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 578899999999999999999987654
No 268
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.18 E-value=0.0061 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..+++++|.+|+||||++..++.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999886543
No 269
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.17 E-value=0.0067 Score=46.12 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
...++|.|+|-||+||||+|..++..+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 356899999999999999999988865443
No 270
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.17 E-value=0.0069 Score=44.93 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
++|+|.|-||+||||+|..+...+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 57888899999999999998886654
No 271
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.17 E-value=0.0033 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 272
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.004 Score=45.79 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..|.|.|+.|+||||+++.+...+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998763
No 273
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.16 E-value=0.0025 Score=48.02 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999774
No 274
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.15 E-value=0.0037 Score=54.38 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=35.0
Q ss_pred CCccchHHHHHHHHHHhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTG-----------SAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.++.|.++.++.|...+... ....+-+-++|++|+|||.||+++++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 45678888888887654311 1124456799999999999999998854
No 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.14 E-value=0.0026 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.+..-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998744
No 276
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.14 E-value=0.0026 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999774
No 277
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.13 E-value=0.0067 Score=50.17 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=24.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
..+|.++|++|+||||+|+.+...+...|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 46888999999999999999988765444
No 278
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.13 E-value=0.0021 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998743
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.13 E-value=0.0026 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999998774
No 280
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.13 E-value=0.0036 Score=48.95 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|+.|+||||||..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 5789999999999999999988643
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.13 E-value=0.0036 Score=42.06 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998763
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.10 E-value=0.0028 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999998743
No 283
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.09 E-value=0.0042 Score=42.62 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..++++|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999876
No 284
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.09 E-value=0.0029 Score=47.54 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998743
No 285
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.09 E-value=0.0044 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=19.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..--|.++|.+|+|||||...+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345678999999999999988876
No 286
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.09 E-value=0.017 Score=41.53 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=26.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.|.|-|.-|+||||.++.+++.+...-....+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4678899999999999999998876644444443
No 287
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.08 E-value=0.014 Score=43.44 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
..|.+.|+.|+||||++..+.+.+... +.....+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 588999999999999999999977554 44344443
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.08 E-value=0.0035 Score=50.72 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.++|.+|+||||++..+.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999888654
No 289
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.05 E-value=0.015 Score=48.03 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+|.|+|.+|+||||++..+...+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999998876543
No 290
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.04 E-value=0.0079 Score=48.95 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
...+|.++|++|+||||++..++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999988865543
No 291
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.04 E-value=0.0046 Score=44.70 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.+|.|.|+.|+||||+++.+..++.-.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 589999999999999999999876543
No 292
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.03 E-value=0.0044 Score=46.21 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...++|.|++|+||||+|+.+....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3467999999999999999998865
No 293
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.03 E-value=0.0046 Score=48.23 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...+|.|.|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356889999999999999999988653
No 294
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.02 E-value=0.012 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-.++-|+|.+|+||||||..++-.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999999988765
No 295
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.02 E-value=0.0036 Score=43.78 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998765
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.006 Score=42.60 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
....|.++|.+|+|||||...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 355788999999999999998876
No 297
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.01 E-value=0.011 Score=45.70 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 52 ERHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 52 ~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
+...+.+...+.. ..-.+.+-++|++|+||||+|+.+...+.
T Consensus 8 ~~~~~~l~~~i~~-~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 8 RPDFEKLVASYQA-GRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHHHHT-TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 3445555555542 22245688999999999999999998764
No 298
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.00 E-value=0.0043 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 299
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.00 E-value=0.0044 Score=43.28 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+..|+|+.|+|||||..+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3788999999999999999876
No 300
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.99 E-value=0.013 Score=43.27 Aligned_cols=27 Identities=33% Similarity=0.419 Sum_probs=24.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
-..|.+.|+.|+||||+++.+.+.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468889999999999999999998765
No 301
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.99 E-value=0.0093 Score=44.93 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++|.|.|-||+||||+|..+...+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 367888899999999999998886543
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.98 E-value=0.0064 Score=41.08 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998873
No 303
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.96 E-value=0.0046 Score=43.09 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.-|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998863
No 304
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.96 E-value=0.019 Score=41.95 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=26.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEE
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFA 103 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v 103 (144)
..|.+-|+.|+||||++..+...+... +....+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 468899999999999999999987554 4344443
No 305
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.95 E-value=0.0052 Score=42.67 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...|.++|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999987
No 306
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.95 E-value=0.0083 Score=48.70 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=24.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhccC
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEHF 97 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 97 (144)
..+|.++|++|+||||+++.+.......|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45788999999999999999998765444
No 307
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.94 E-value=0.014 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=24.5
Q ss_pred EEEEEE-ccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 70 YILGIW-GIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 70 ~~i~I~-G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
++|.|+ +-||+||||+|..+...+...=..++.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 578888 5799999999999888665432334444
No 308
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.94 E-value=0.0049 Score=41.51 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.-|.++|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999998763
No 309
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.93 E-value=0.0083 Score=47.48 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
-.+++|+|+.|+||||+...+...+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999887544
No 310
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.92 E-value=0.0049 Score=48.31 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
...++|+|+.|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999988543
No 311
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.91 E-value=0.0052 Score=41.53 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.5
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999877
No 312
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.89 E-value=0.0073 Score=41.16 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45688999999999999998866
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.88 E-value=0.004 Score=47.10 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.87 E-value=0.0054 Score=41.25 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.3
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999988876
No 315
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.87 E-value=0.0061 Score=43.51 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
....|.++|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998874
No 316
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.87 E-value=0.0062 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+|.|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999988653
No 317
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.86 E-value=0.0083 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
.+++|.|+.|+|||||.+.+...+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 4899999999999999999987553
No 318
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.86 E-value=0.0028 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-.+|+|.|+.|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998765
No 319
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.85 E-value=0.01 Score=42.24 Aligned_cols=23 Identities=26% Similarity=-0.022 Sum_probs=18.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.++.++|+.|+||||++..+..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36778999999999999655554
No 320
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.85 E-value=0.0055 Score=42.59 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456789999999999999877764
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.84 E-value=0.005 Score=48.76 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 47899999999999999999873
No 322
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.83 E-value=0.012 Score=46.13 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+++|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 323
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.83 E-value=0.0058 Score=41.48 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999988763
No 324
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.82 E-value=0.0059 Score=41.36 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.-|.++|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998773
No 325
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0059 Score=41.27 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4688999999999999988763
No 326
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.80 E-value=0.0058 Score=42.52 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998763
No 327
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.80 E-value=0.015 Score=43.26 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
-.|-+.|.||+||||+|..+.......
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 346678999999999999888865443
No 328
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.0032 Score=52.85 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=33.1
Q ss_pred CCccchHHHHHHHHHHhhcCCC---------CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCTGSA---------GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~~~~---------~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
+.++|.+..+..+...+..... .-..+-++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 5789999876666544432210 00157799999999999999988743
No 329
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.80 E-value=0.0059 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
-.++.|+|++|+|||||+..++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988765
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.78 E-value=0.0086 Score=40.97 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+.+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 456788999999999999998876
No 331
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.005 Score=41.71 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=19.4
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999876
No 332
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.76 E-value=0.0064 Score=41.08 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999999876
No 333
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.75 E-value=0.0097 Score=40.67 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...-|.++|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999998774
No 334
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.75 E-value=0.0066 Score=41.02 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=18.3
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~ 91 (144)
|.++|.+|+|||||...+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999999876
No 335
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.75 E-value=0.0058 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999873
No 336
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.74 E-value=0.0066 Score=41.55 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45678999999999999999876
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.73 E-value=0.0044 Score=47.99 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+++|+|+.|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5789999999999999999876
No 338
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.73 E-value=0.0057 Score=41.42 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 468999999999999998753
No 339
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.73 E-value=0.0087 Score=40.61 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVF 90 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~ 90 (144)
.-|.++|.+|+|||||...+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999875
No 340
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.73 E-value=0.006 Score=48.48 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 57899999999999999998763
No 341
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.72 E-value=0.005 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||.+.+..-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999998743
No 342
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.72 E-value=0.02 Score=44.94 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 66 SAGVYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 66 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
....+++.+.|.||+||||+|..++..+.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 34467888889999999999998887655
No 343
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.70 E-value=0.0073 Score=42.13 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=21.5
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.....|.++|.+|+|||||...+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466788999999999999998875
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.70 E-value=0.0062 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 47899999999999999999873
No 345
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.69 E-value=0.007 Score=41.33 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...-|.++|.+|+|||||...+.+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999998873
No 346
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.69 E-value=0.0064 Score=42.15 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998763
No 347
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.68 E-value=0.0064 Score=48.17 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 47899999999999999999873
No 348
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.68 E-value=0.0064 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 47899999999999999999873
No 349
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.68 E-value=0.01 Score=40.15 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.4
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999998875
No 350
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.68 E-value=0.0072 Score=41.39 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
....|.++|.+|+|||||...+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456788999999999999998865
No 351
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.68 E-value=0.012 Score=48.61 Aligned_cols=28 Identities=4% Similarity=0.055 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...+|-+.|+.|+||||+|+.+..++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3467888999999999999999998764
No 352
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.67 E-value=0.011 Score=41.21 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
....-|.++|.+|+|||||...+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999998865
No 353
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.66 E-value=0.0065 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 47899999999999999999873
No 354
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.66 E-value=0.014 Score=42.25 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=21.0
Q ss_pred EEEEccCCCchHHHHHHHHHHhhcc
Q 032234 72 LGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
|.|.|-||+||||+|..+...+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 5668999999999999998876543
No 355
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.65 E-value=0.0073 Score=41.74 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999887
No 356
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.65 E-value=0.0073 Score=41.68 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.-|.++|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998873
No 357
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.64 E-value=0.045 Score=39.64 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=24.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEG 99 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 99 (144)
..|.|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 367889999999999999999987554443
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.64 E-value=0.0067 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 47899999999999999999873
No 359
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.64 E-value=0.0076 Score=40.91 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35678999999999999999876
No 360
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.63 E-value=0.014 Score=47.11 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=23.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++.++|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999998865543
No 361
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.63 E-value=0.0087 Score=46.19 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+.++.|.|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3678999999999999999999864
No 362
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.62 E-value=0.0067 Score=50.62 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=23.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++.|+|+.|+|||||++.+...+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 68899999999999999999997653
No 363
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.62 E-value=0.0075 Score=42.44 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..|.++|.+|+|||||...+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999886
No 364
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.62 E-value=0.0062 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.5
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|+|+|..|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 448999999999999999764
No 365
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.60 E-value=0.0055 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 47899999999999999999874
No 366
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.60 E-value=0.0079 Score=41.36 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 45678999999999999999886
No 367
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.60 E-value=0.0079 Score=41.51 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...-|.++|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556789999999999999998863
No 368
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.59 E-value=0.0079 Score=42.16 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.--|.|+|.+|+|||||...+.+
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999987766
No 369
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.59 E-value=0.008 Score=41.37 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999988876
No 370
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.59 E-value=0.0088 Score=40.88 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+.+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456778999999999999998865
No 371
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.58 E-value=0.008 Score=41.74 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999998874
No 372
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.58 E-value=0.0065 Score=41.76 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999877
No 373
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.58 E-value=0.008 Score=42.12 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.--|.++|.+|+|||||...+.+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHh
Confidence 45678999999999999988876
No 374
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.58 E-value=0.008 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45788999999999999999877
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.58 E-value=0.0081 Score=41.50 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45678999999999999999876
No 376
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.57 E-value=0.0084 Score=41.60 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
....|.++|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998774
No 377
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.56 E-value=0.0083 Score=40.95 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578899999999999999876
No 378
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.56 E-value=0.0099 Score=43.85 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|+.|+||||+|+.+..++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988643
No 379
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.56 E-value=0.041 Score=46.25 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 53 RHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
.+.+.+...+. .++..|+|++|+||||++..+...+...-...+.++
T Consensus 184 ~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 184 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34444454442 135679999999999988877665443233445554
No 380
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.54 E-value=0.0036 Score=46.68 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
....|.|.|+.|+||||+++.+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999887765
No 381
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.53 E-value=0.0086 Score=41.13 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.2
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998875
No 382
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.53 E-value=0.0087 Score=41.07 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 34678999999999999998876
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.53 E-value=0.012 Score=41.44 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567889999999999999998763
No 384
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.52 E-value=0.0081 Score=41.56 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 032234 71 ILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~ 91 (144)
-|.++|.+|+|||||...+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998876
No 385
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.52 E-value=0.0041 Score=44.11 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-..++|+|..|+|||||...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999987754
No 386
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.51 E-value=0.0089 Score=41.17 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45678999999999999999885
No 387
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.50 E-value=0.005 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.++.-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999873
No 388
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0089 Score=41.99 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998773
No 389
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.48 E-value=0.013 Score=40.03 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45678999999999999998865
No 390
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0094 Score=40.87 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45678999999999999999876
No 391
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.014 Score=40.71 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45678999999999999999877
No 392
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.45 E-value=0.023 Score=42.45 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.....|.++|.+|+|||||...+.+.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999998863
No 393
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.44 E-value=0.027 Score=41.94 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.7
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.....|.++|.+|+|||||...+..
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999876
No 394
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.44 E-value=0.018 Score=46.40 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.-.+++|.|+.|+||||+...+...+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3468999999999999999999886643
No 395
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.44 E-value=0.03 Score=40.34 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=23.8
Q ss_pred EEEEE-ccCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 71 ILGIW-GIGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 71 ~i~I~-G~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
+|.|+ +-||+||||+|..+...+...- .++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 56776 5799999999999988765543 44444
No 396
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.44 E-value=0.0078 Score=42.68 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.-|.++|.+|+|||||...+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998864
No 397
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.42 E-value=0.0096 Score=42.06 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+.+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 355678999999999999999887
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.42 E-value=0.0088 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||.+.+..-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 57899999999999999999863
No 399
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.42 E-value=0.053 Score=45.65 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEEccCCCchHHHH-HHHHHHhhccCCcEEEEc
Q 032234 53 RHIKQTEPLLCTGSAGVYILGIWGIGGIGKTTIA-DAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa-~~v~~~~~~~f~~~~~v~ 104 (144)
.+.+.+...|.. ..+.-|+||||+|||+.. ..++.-+... ..+.++
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~ 239 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEE
Confidence 445556555532 135678999999999655 4454444332 345554
No 400
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.0098 Score=41.70 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45678999999999999999876
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.011 Score=41.43 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346789999999999999998874
No 402
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.41 E-value=0.016 Score=40.68 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.|+|.+|+|||||...+..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 356788999999999999998876
No 403
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.40 E-value=0.01 Score=41.35 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.|+|.+|+|||||...+.+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 355788999999999999999887
No 404
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.39 E-value=0.01 Score=46.69 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|.|+.|+|||||.+.+.+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999998654
No 405
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.38 E-value=0.025 Score=41.09 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=23.7
Q ss_pred CeEEEEEEc-cCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWG-IGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G-~gGiGKTtLa~~v~~~~~~~ 96 (144)
..++|+|++ -||+||||+|..+...+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 357888886 69999999999998876554
No 406
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.38 E-value=0.049 Score=42.53 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
...++.+.|.||+||||+|..++..+..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 3445555689999999999988775443
No 407
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.35 E-value=0.0078 Score=47.35 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|+|+.|+|||||++.+...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999998744
No 408
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.34 E-value=0.011 Score=42.13 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999998763
No 409
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.34 E-value=0.031 Score=43.93 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.6
Q ss_pred CCeEEEEEEc-cCCCchHHHHHHHHHHhhcc
Q 032234 67 AGVYILGIWG-IGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 67 ~~~~~i~I~G-~gGiGKTtLa~~v~~~~~~~ 96 (144)
...++|+|++ -||+||||+|..++..+...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~ 171 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM 171 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC
Confidence 4578999986 89999999999988865443
No 410
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.34 E-value=0.011 Score=42.40 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...-|.++|.+|+|||||...+.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998773
No 411
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.34 E-value=0.0089 Score=43.82 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..|.|.|++|+||||||..+..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999998764
No 412
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.33 E-value=0.028 Score=45.87 Aligned_cols=35 Identities=9% Similarity=-0.092 Sum_probs=26.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc-CCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH-FEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~v~ 104 (144)
.++.|.|.+|+||||||..++...... =..++|++
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 477889999999999999888766543 23566664
No 413
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.33 E-value=0.011 Score=41.20 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998773
No 414
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.011 Score=41.04 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998773
No 415
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.32 E-value=0.011 Score=41.37 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998873
No 416
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.32 E-value=0.011 Score=41.33 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 44678999999999999998876
No 417
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.32 E-value=0.011 Score=41.27 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 45678999999999999999886
No 418
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.31 E-value=0.011 Score=41.72 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35678999999999999988874
No 419
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.31 E-value=0.028 Score=44.10 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=25.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc--CCcEEEEc
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEH--FEGSYFAH 104 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~--f~~~~~v~ 104 (144)
++-|+|++|+|||||+..+....... =..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 67899999999999998877654433 23456665
No 420
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.011 Score=42.20 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+.+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 355778999999999999998876
No 421
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.29 E-value=0.0078 Score=42.64 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=19.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVF 90 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~ 90 (144)
...-|.++|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999874
No 422
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.28 E-value=0.011 Score=41.58 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.|+|.+|+|||||...+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 356788999999999999998876
No 423
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.26 E-value=0.012 Score=41.02 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45788999999999999999876
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.009 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 57899999999999999999884
No 425
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.25 E-value=0.017 Score=47.46 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=18.4
Q ss_pred EEEEEEccCCCchHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAV 89 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v 89 (144)
.+++|.|+.|+|||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 58899999999999999985
No 426
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.25 E-value=0.0095 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999998876
No 427
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.23 E-value=0.015 Score=42.48 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
....|+++|.+|+|||||...+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 456789999999999999999877
No 428
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.22 E-value=0.012 Score=41.53 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999876
No 429
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.21 E-value=0.0083 Score=41.33 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456778999999999999988763
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.19 E-value=0.0094 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999987766
No 431
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.18 E-value=0.014 Score=44.72 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...++|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999998873
No 432
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.17 E-value=0.014 Score=49.40 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|.+.|++|+||||+|+.+...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999876
No 433
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.17 E-value=0.013 Score=41.40 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999999876
No 434
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.17 E-value=0.028 Score=41.49 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
.++-++|..|+||||++..+..+...+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 577789999999999998887765443
No 435
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.013 Score=40.87 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998863
No 436
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.15 E-value=0.014 Score=43.60 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999998763
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.013 Score=41.59 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 35678999999999999998876
No 438
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.14 E-value=0.043 Score=42.83 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
..+++-+.|-||+||||+|..++..+...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence 35677778999999999999988866543
No 439
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.10 E-value=0.014 Score=41.44 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999998876
No 440
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.10 E-value=0.018 Score=48.22 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.|.|++|+||||+|+.+...+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999998764
No 441
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.09 E-value=0.038 Score=46.14 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 96 (144)
+++.|.|.+|+||||++..+.......
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 578899999999999999988865443
No 442
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.09 E-value=0.017 Score=40.25 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
....-|.|+|.+|+|||||...+.+
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3467889999999999999998765
No 443
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.07 E-value=0.012 Score=47.73 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=21.2
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..+.-++|+|+.|+|||||.+.++.
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhC
Confidence 3344599999999999999999876
No 444
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.07 E-value=0.031 Score=40.38 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=24.4
Q ss_pred EEEEEEc-cCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 70 YILGIWG-IGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 70 ~~i~I~G-~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
++|.|++ -||+||||+|..+...+...-..++.+
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5778875 699999999999988765442333334
No 445
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.06 E-value=0.021 Score=39.65 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445688999999999999998743
No 446
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.06 E-value=0.045 Score=45.47 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHhh
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..+|.+.|++|+||||+|+.+...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 46889999999999999999988654
No 447
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.05 E-value=0.013 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.5
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.++.|+|++|+|||||+..++-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 5889999999999999997653
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.04 E-value=0.014 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++++|++|+|||||...+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999998864
No 449
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.04 E-value=0.013 Score=40.55 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 456778999999999999998875
No 450
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.04 E-value=0.014 Score=44.71 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVF 90 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~ 90 (144)
.++++.|+.|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999998
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.03 E-value=0.015 Score=41.23 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.|+|.+|+|||||...+.+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 356788999999999999998876
No 452
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.03 E-value=0.015 Score=41.09 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999998876
No 453
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.03 E-value=0.014 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999988764
No 454
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.01 E-value=0.022 Score=41.60 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
...+|+|.|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45699999999999999999987754
No 455
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.01 E-value=0.018 Score=41.57 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
....|.++|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999988763
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.01 E-value=0.013 Score=41.20 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998854
No 457
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.01 E-value=0.045 Score=40.51 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCeEEEEEEc-cCCCchHHHHHHHHHHhhccCCcEEEE
Q 032234 67 AGVYILGIWG-IGGIGKTTIADAVFNKISEHFEGSYFA 103 (144)
Q Consensus 67 ~~~~~i~I~G-~gGiGKTtLa~~v~~~~~~~f~~~~~v 103 (144)
...++|.|++ -||+||||+|..+...+. .=..++.+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 3568888875 799999999999988776 42334444
No 458
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.01 E-value=0.022 Score=43.12 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.....|+|+|.+|+|||||...+..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHC
Confidence 3567899999999999999998876
No 459
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.00 E-value=0.012 Score=40.76 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35678999999999999999875
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.00 E-value=0.015 Score=47.10 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~ 94 (144)
..++|.|+.|+|||||.+.+.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 5789999999999999999988653
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.00 E-value=0.014 Score=48.46 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.++...
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998843
No 462
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.015 Score=40.46 Aligned_cols=24 Identities=29% Similarity=0.145 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.++|.+|+|||||...+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346778999999999999999874
No 463
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.96 E-value=0.015 Score=41.13 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
...-|.|+|.+|+|||||...+.+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 355678999999999999998864
No 464
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.95 E-value=0.015 Score=41.65 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45678999999999999998865
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.95 E-value=0.019 Score=39.38 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+..|+|+.|.|||||..+++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999999998875
No 466
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.94 E-value=0.014 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+...
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999874
No 467
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.91 E-value=0.0099 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|+|+.|+|||||.+.+...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998754
No 468
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.89 E-value=0.0084 Score=41.39 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=10.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.++|.+|+|||||...+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999988765
No 469
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.89 E-value=0.02 Score=41.99 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=23.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
..|.+-|+.|+||||++..+.+.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47889999999999999999998765
No 470
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.88 E-value=0.037 Score=40.50 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEEEc-cCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWG-IGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G-~gGiGKTtLa~~v~~~~~~ 95 (144)
++|.|++ -||+||||+|..+...+..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~ 29 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQ 29 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence 5788875 6999999999998886654
No 471
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.88 E-value=0.013 Score=48.73 Aligned_cols=24 Identities=50% Similarity=0.745 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|+|+.|+|||||++.++...
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998743
No 472
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.87 E-value=0.069 Score=42.00 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=32.5
Q ss_pred CCccchHHHHHHHHHHhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHh
Q 032234 46 KDLVGVERHIKQTEPLLCT-GSAGVYILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 46 ~~~vGr~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
..++|.......+...+.. ..... .+-|+|.+|+||+++|+.++...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~-~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKA-PVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCS-CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccch-hheEEeCCCchHHHHHHHHHHhc
Confidence 4678877766666554432 12223 35589999999999999998853
No 473
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.85 E-value=0.016 Score=40.70 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 44678999999999999998865
No 474
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.84 E-value=0.053 Score=40.83 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.9
Q ss_pred EEEEEEc-cCCCchHHHHHHHHHHhhcc
Q 032234 70 YILGIWG-IGGIGKTTIADAVFNKISEH 96 (144)
Q Consensus 70 ~~i~I~G-~gGiGKTtLa~~v~~~~~~~ 96 (144)
++|.|++ -||+||||+|..+...+...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~ 32 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYG 32 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHC
Confidence 5788874 79999999999998866543
No 475
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.83 E-value=0.018 Score=41.30 Aligned_cols=23 Identities=22% Similarity=0.136 Sum_probs=19.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 34677999999999999998876
No 476
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.79 E-value=0.053 Score=41.78 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.++-+.|.||+||||+|..++..+..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~ 40 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMAR 40 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 44455689999999999988875543
No 477
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.79 E-value=0.017 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 78999999999999999998874
No 478
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.77 E-value=0.022 Score=42.02 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 032234 68 GVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 68 ~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
....|+|+|.+|+|||||...+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999998876
No 479
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.75 E-value=0.023 Score=41.68 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+...||+.|.-|+||||+++.+..
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998865
No 480
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.74 E-value=0.023 Score=42.46 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+|+|.|+.|+||||+|..+...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998764
No 481
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.73 E-value=0.022 Score=43.69 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.....|+|+|.+|+|||||...+..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3467899999999999999999877
No 482
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.73 E-value=0.018 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.++++.|+.|+|||||.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4789999999999999999876
No 483
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.72 E-value=0.019 Score=40.89 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45678999999999999998876
No 484
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.71 E-value=0.018 Score=48.54 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHh
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKI 93 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~ 93 (144)
.+++|.|+.|+|||||.+.++...
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998843
No 485
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.70 E-value=0.019 Score=41.66 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999988763
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.65 E-value=0.017 Score=47.96 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+...
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998763
No 487
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.021 Score=41.00 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
..-|.|+|.+|+|||||...+.+
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHhc
Confidence 45678999999999999998876
No 488
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.63 E-value=0.015 Score=40.48 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 032234 69 VYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 69 ~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..-|.++|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999988653
No 489
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.019 Score=48.36 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|.|+.|+|||||++.++.-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999874
No 490
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.61 E-value=0.015 Score=46.84 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 032234 72 LGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 72 i~I~G~gGiGKTtLa~~v~~~ 92 (144)
|+|+|..|+|||||...++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999998763
No 491
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.58 E-value=0.05 Score=38.96 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.9
Q ss_pred EEEEEEc-cCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWG-IGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G-~gGiGKTtLa~~v~~~~~~ 95 (144)
++|.|.| -||+||||++..+...+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~ 28 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKA 28 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678887 5999999999998886543
No 492
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.02 Score=48.24 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.+++|+|+.|+|||||.+.+...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 48899999999999999998874
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.54 E-value=0.041 Score=45.22 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISE 95 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 95 (144)
.+++|.|++|+|||||+..++.....
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 58899999999999999999886543
No 494
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.52 E-value=0.032 Score=45.70 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=25.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccC-CcEEEE
Q 032234 71 ILGIWGIGGIGKTTIADAVFNKISEHF-EGSYFA 103 (144)
Q Consensus 71 ~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~v 103 (144)
.++|+|.+|+|||||+..+.......+ +.++++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 578999999999999999988765433 333444
No 495
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.50 E-value=0.015 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 67 AGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 67 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
.....|.|+|.+|+|||||...+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34567889999999999999998774
No 496
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.49 E-value=0.072 Score=42.69 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCCccchHHHHHHHHHHhhcC---------CCCeEEEEEEccCCCchHHHHHHHHHH
Q 032234 45 NKDLVGVERHIKQTEPLLCTG---------SAGVYILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 45 ~~~~vGr~~~~~~l~~~l~~~---------~~~~~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..+-.|.++..+.+...+... ......++|+|.+|+|||||...+...
T Consensus 147 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 147 AEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp TTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 344556677777776555321 123467899999999999999998764
No 497
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.47 E-value=0.053 Score=42.77 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCeEEEEEE-ccCCCchHHHHHHHHHHhh
Q 032234 67 AGVYILGIW-GIGGIGKTTIADAVFNKIS 94 (144)
Q Consensus 67 ~~~~~i~I~-G~gGiGKTtLa~~v~~~~~ 94 (144)
...++|.|+ |-||+||||+|..+...+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 457889888 6899999999999888664
No 498
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.47 E-value=0.11 Score=45.15 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=23.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHhhccCCcEEEEc
Q 032234 70 YILGIWGIGGIGKTTIADAVFNKISEHFEGSYFAH 104 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~v~ 104 (144)
++..|+|++|+||||++..+...+...-...+.+.
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 46679999999999988877665443222344443
No 499
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.46 E-value=0.011 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFN 91 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~ 91 (144)
.+++|+|++|+|||||...+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4889999999999999998864
No 500
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.44 E-value=0.021 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHH
Q 032234 70 YILGIWGIGGIGKTTIADAVFNK 92 (144)
Q Consensus 70 ~~i~I~G~gGiGKTtLa~~v~~~ 92 (144)
..++|+|+.|+|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998773
Done!