BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032235
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RH0|A Chain A, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|B Chain B, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|C Chain C, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|D Chain D, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
Length = 157
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 3 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 61
Query: 68 ELTCPVKTDSSFWTLEDD---VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED + +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 62 KLFDSTIADEGTWTLEDRKXVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQXQRKLTL 121
Query: 125 QRFQEE 130
+RFQ+E
Sbjct: 122 ERFQKE 127
>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear
Distribution Gene C
Length = 121
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL
Sbjct: 11 LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 70
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
VK + S W +ED V+ + L K +K + W
Sbjct: 71 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 102
>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog
Length = 131
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 21 FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
+ W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL VK + S
Sbjct: 10 YRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 69
Query: 79 FWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W +ED V+ + L K +K + W + +++ + E +L
Sbjct: 70 SWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114
>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|B Chain B, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|D Chain D, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|E Chain E, Crystal Structure Of Human Nuclear Migration Protein Nudc
Length = 121
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 2 AEKLAPEKRHRFLHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELG 57
+ KL P L NG + + W QTL E+++ + N + K IQ +H+ +G
Sbjct: 3 SSKLKPN-----LGNGADLPNYRWTQTLSELDLAVPFXVNFRLKGKDMVVDIQRRHLRVG 57
Query: 58 IKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
+KG P ++ EL VK + S W + D V+ + L K +K + W+
Sbjct: 58 LKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102
>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc
Length = 121
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 2 AEKLAPEKRHRFLHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELG 57
+ KL P L NG + + W QTL E+++ + N + K IQ +H+ +G
Sbjct: 3 SSKLKPN-----LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVG 57
Query: 58 IKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
+KG P ++ EL VK + S W + D V+ + L K +K + W+
Sbjct: 58 LKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102
>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1
pdb|2O30|B Chain B, Nuclear Movement Protein From E. Cuniculi Gb-M1
Length = 131
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ WDQ L+EINI + + S + K I + +G ++ EL V S +W
Sbjct: 7 YTWDQELNEINIQFPVTGDADSSAIKIRXVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65
Query: 81 TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
+ DV+ + +TK+ + + W S ++G +D
Sbjct: 66 VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 31.2 bits (69), Expect = 0.19, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 29 EINIYINLPPNVHSKQFYCKIQSKHIE-LGIKGNPPYLNHELTCPVKTDS-SFWTLEDDV 86
E+ YI+ HS+ F ++ +H LG+ + P + S S W +DD+
Sbjct: 382 ELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPPSESNW--KDDL 439
Query: 87 MHITLTKRDKGQTWASPIMGQG----QLDPYVTDQEQKRLMLQ 125
+ L R+KG+ + I+ +G QL+P +T +E K ++++
Sbjct: 440 KKVCLRHREKGRRKTTVIVAEGAIDDQLNP-ITSEEVKDVLVE 481
>pdb|1WGV|A Chain A, Solution Structure Of The Cs Domain Of Human Kiaa1068
Protein
Length = 124
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V KQ + S I + + G + +LT + T+
Sbjct: 22 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 81
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIM 105
SS W+LE + + L+K G+ W + I+
Sbjct: 82 SSLWSLEPGKCVLVNLSKV--GEYWWNAIL 109
>pdb|3BK6|A Chain A, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
pdb|3BK6|B Chain B, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
pdb|3BK6|C Chain C, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
Length = 188
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 97 GQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLVQF 144
QT ++GQ LD ++++++ + LQR +E W + + V+
Sbjct: 62 SQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEI 109
>pdb|3M9Z|A Chain A, Crystal Structure Of Extracellular Domain Of Mouse Nkr-P1a
Length = 139
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 91 LTKRDK-------GQTWASPIM---GQGQLDPYVTDQEQKRLMLQRFQEEVNYHWL 136
L+ RDK TW ++ G+G + DQE+ R +L +E+ N W+
Sbjct: 11 LSHRDKCFHVSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKYNSFWI 66
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 26.2 bits (56), Expect = 6.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 47 CKIQSKHIELGIKGNPPYLNHEL 69
C I KHIEL PPY N+ L
Sbjct: 54 CPIWGKHIELQQPDRPPYRNNFL 76
>pdb|3T3A|A Chain A, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
pdb|3T3A|B Chain B, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
Length = 139
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 91 LTKRDK-------GQTWASPIM---GQGQLDPYVTDQEQKRLMLQRFQEEVNYHWL 136
L+ RDK TW ++ G+G + DQE+ R +L +E+ N W+
Sbjct: 11 LSHRDKCFRVSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKYNSFWI 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,852,084
Number of Sequences: 62578
Number of extensions: 201939
Number of successful extensions: 432
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 21
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)