BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032235
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQ48|NUDC2_MOUSE NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1
SV=1
Length = 157
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 64
Query: 68 ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED M +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 65 KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124
Query: 125 QRFQEE 130
+RFQ+E
Sbjct: 125 ERFQKE 130
>sp|Q8WVJ2|NUDC2_HUMAN NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1
SV=1
Length = 157
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKG 64
Query: 68 ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED M +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 65 KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124
Query: 125 QRFQEE 130
+RFQ+E
Sbjct: 125 ERFQKE 130
>sp|Q5M823|NUDC2_RAT NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2
PE=2 SV=1
Length = 157
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWT 81
+W QTL+E+ I + +PP ++ C +QS+H+ L + G L +L D WT
Sbjct: 20 QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 78
Query: 82 LEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
LED M +T TKRD W S + + DP+V DQ Q++L L+RFQ+E
Sbjct: 79 LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKE 130
>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1
Length = 304
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ W Q L E+ + I +P ++ C+I+ +++G+KG P ++ EL VK D +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206
Query: 81 TLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
+ED V+ I LTK D+ + W + G+ ++D + E +L
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKL 249
>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1
Length = 293
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ W Q L E+ I I +P S+ C+I+ +++G+KG ++ E VK D FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195
Query: 81 TLEDDVM-HITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
+ED M + LTK+D+ + W + G+ ++D + E +L
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKL 238
>sp|Q503C8|NUDC1_DANRE NudC domain-containing protein 1 OS=Danio rerio GN=nudcd1 PE=2 SV=1
Length = 585
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 16 NGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKT 75
N ++ W QT +++ + + LP K+ + + + P L+ +L PV
Sbjct: 276 NSDPIYFWQQTEEDVTLCVRLPEGTTKDDIRFKLTVDCLRVRVGDYAPLLDGQLFAPVDP 335
Query: 76 DSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRF 127
++S WT+ DD + ++L KR +G W+ ++G + + Y+ + EQK + QR
Sbjct: 336 EASTWTMNDDKSLEVSLQKRSEGPLWSEVVLGDRRGE-YLMNDEQKSQLQQRL 387
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1
Length = 332
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL
Sbjct: 164 LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 223
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
VK + S W +ED V+ + L K +K + W
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 255
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1
Length = 331
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 163 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 222
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
VK + S W +ED V+ + L K +K + W+ + +++ + E +L
Sbjct: 223 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKL 276
>sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopus laevis GN=nudcd1 PE=2
SV=1
Length = 586
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDS 77
+ ++ W QT +E+ + LP + K I++ IK +L +L V +S
Sbjct: 277 EPLYNWQQTGEEVTLTFLLPEGKTKEDLNIKFLPGEIDISIKDQGTFLKGQLYSDVDCES 336
Query: 78 SFWTL-EDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRF 127
S W + E + +TLTKR+ G TWA ++ Q + Y+ D Q + ++
Sbjct: 337 SAWIMKEGRGVEVTLTKREPGCTWAELVIADKQGE-YIADPAQTAAIAEKL 386
>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1
Length = 332
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 164 LGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGEL 223
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
VK + S W +ED V+ + L K +K + W+ + +++ + E +L
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKL 277
>sp|Q28IB1|NUDC1_XENTR NudC domain-containing protein 1 OS=Xenopus tropicalis GN=nudcd1
PE=2 SV=1
Length = 586
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDS 77
+ ++ W QT +++ + LP + + K I++ +K +L +L + +S
Sbjct: 277 EPLYNWHQTGEDVTLTFQLPEGMTKEDLTIKFLPGEIDISLKDQGTFLKGQLYLDIDCES 336
Query: 78 SFWTL-EDDVMHITLTKRDKGQTWASPIMGQGQ----LDPYVTDQEQKRLM 123
S W + E + +TLTKR+ G TWA ++G +DP T ++LM
Sbjct: 337 SAWIIKEGRSVEVTLTKREPGSTWAELVIGDKHGEYIVDPTQTAAIAEQLM 387
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1
SV=1
Length = 332
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + + + K IQ +H+ +G+KG P ++ EL
Sbjct: 164 LGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGEL 223
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
VK + S W +ED V+ + L K +K + W
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 255
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1
Length = 341
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 21 FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
+ W QTL E+++ I + + K IQ + + +G+KG+PP ++ EL VK + S
Sbjct: 182 YRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEES 241
Query: 79 FWTLED 84
W +ED
Sbjct: 242 SWLIED 247
>sp|Q96RS6|NUDC1_HUMAN NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1
SV=2
Length = 583
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSF 79
++ W QT D++ + I LP + + + HI + +K + +L +L + +SS
Sbjct: 277 LYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDH-QFLEGKLYSSIDHESST 335
Query: 80 WTL-EDDVMHITLTKRDKGQTWASPIMG--QGQLDPYVTDQEQKRLMLQRF----QEEVN 132
W + E + + I+L K+++G TW ++G QG+L + D Q + +R EE+N
Sbjct: 336 WIIKESNSLEISLIKKNEGLTWPELVIGDKQGEL---IRDSAQCAAIAERLMHLTSEELN 392
>sp|O60166|NUDC_SCHPO Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nudc PE=3 SV=1
Length = 166
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCP----VKTD 76
+EWDQT+ +++I I++P +K + S H +L I+ N P L+ P + D
Sbjct: 11 YEWDQTIADVDIVIHVPKGTRAKSLQVDM-SNH-DLKIQINVPERKVLLSGPLEKQINLD 68
Query: 77 SSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
S WT+E+ + + I L K +K + W+ I G +D + E +L
Sbjct: 69 ESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKL 115
>sp|Q6PIP5|NUDC1_MOUSE NudC domain-containing protein 1 OS=Mus musculus GN=Nudcd1 PE=2
SV=2
Length = 582
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDS 77
+ ++ W Q+ D++ + + LP + + + +I + +K + L +L + +
Sbjct: 274 EPLYYWQQSEDDLTVTVRLPESSTKEDIQIQFLPDNINIKLK-DIQVLEGKLYSSIDHEG 332
Query: 78 SFWTL-EDDVMHITLTKRDKGQTWASPIMG--QGQL--DPYVTDQEQKRLM 123
S WT+ E+D + I+L K+++G W ++G QG+L DP +RLM
Sbjct: 333 STWTIKENDSLEISLIKKNEGLMWPELVVGDKQGELLRDPAQCAAIAERLM 383
>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc
PE=3 SV=1
Length = 171
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIEL-GIKGNPPYLNHELTCPVKTDSSF 79
+ W QTL++ + I L V SK + KI + H+ + + N ++ +L VK
Sbjct: 13 YTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCN 72
Query: 80 WTLEDDV-MHITLTKRDKGQTWASPIM-GQGQLD 111
WTLE + I L K KGQ W S I+ G+ ++D
Sbjct: 73 WTLESGKNLEIELFKL-KGQEWWSCIIQGESEID 105
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudC
PE=3 SV=1
Length = 198
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 1 MAEKLAPEKRHRFLHNGQTV---FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELG 57
+A + A EK+ + + ++W QT+ ++++ I + N+ + ++ I++
Sbjct: 11 LAAREAEEKQRKAAEEAEQATLPYKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVK 70
Query: 58 IKG--NPPYLNHELTCPVKTDSSFWTLE 83
+KG +++ + P+K S WTLE
Sbjct: 71 VKGENGEVFIDGQFPHPIKPSESSWTLE 98
>sp|Q92448|K6PF1_PICPA 6-phosphofructokinase OS=Komagataella pastoris GN=PFK1 PE=3 SV=1
Length = 990
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 29 EINIYINLPPNVHSKQFYCKIQSKH-----IELGIKGNPPYLNHELTCPVKTDSSFWTLE 83
E+ YI+ HS+ F ++ +H + GI Y+ P +T+ W +
Sbjct: 383 ELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPPSETN---W--K 437
Query: 84 DDVMHITLTKRDKGQTWASPIMGQG----QLDPYVTDQEQKRLMLQ 125
DD+ + L R+KG+ + I+ +G QL+P +T +E K ++++
Sbjct: 438 DDLKKVCLRHREKGRRKTTVIVAEGAIDDQLNP-ITSEEVKDVLVE 482
>sp|P15146|MAP2_RAT Microtubule-associated protein 2 OS=Rattus norvegicus GN=Map2 PE=1
SV=3
Length = 1861
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 70 TCPVKTD---SSFWTLEDDVMHITLTKRDKGQ------TWASPIMGQGQLDPYVTDQEQK 120
TCP + S T+EDD + + T D+G+ +A+P+ + + PY D+E +
Sbjct: 1279 TCPGEHKGVVESVVTIEDDFITVVQTTTDEGELGSHSVRFAAPVQPEEERRPYPHDEELE 1338
Query: 121 RLMLQRFQEE 130
LM Q E
Sbjct: 1339 VLMAAEAQAE 1348
>sp|Q5RB75|NUDC3_PONAB NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2
SV=1
Length = 361
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V KQ + S I + + G + +LT + T+
Sbjct: 190 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 249
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
SS W+LE + + L+K G+ W + I+ +G+ +P D+ K + EE
Sbjct: 250 SSLWSLEPGKCVLVNLSK--VGEYWWNAIL-EGE-EPIDIDKINKERSMATVDEE 300
>sp|Q8IVD9|NUDC3_HUMAN NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1
SV=3
Length = 361
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V KQ + S I + + G + +LT + T+
Sbjct: 190 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 249
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
SS W+LE + + L+K G+ W + I+ +G+ +P D+ K + EE
Sbjct: 250 SSLWSLEPGKCVLVNLSK--VGEYWWNAIL-EGE-EPIDIDKINKERSMATVDEE 300
>sp|Q5HAI7|DNLJ_EHRRW DNA ligase OS=Ehrlichia ruminantium (strain Welgevonden) GN=ligA
PE=3 SV=1
Length = 674
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 114 VTDQEQKRLMLQRFQEEVNYHWLLF 138
+TDQE+ +L+L + E++ YH LL+
Sbjct: 1 MTDQEEAKLILDKLNEKIRYHDLLY 25
>sp|Q5FG20|DNLJ_EHRRG DNA ligase OS=Ehrlichia ruminantium (strain Gardel) GN=ligA PE=3
SV=1
Length = 674
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 114 VTDQEQKRLMLQRFQEEVNYHWLLF 138
+TDQE+ +L+L + E++ YH LL+
Sbjct: 1 MTDQEEAKLILDKLNEKIRYHDLLY 25
>sp|Q8R1N4|NUDC3_MOUSE NudC domain-containing protein 3 OS=Mus musculus GN=Nudcd3 PE=2
SV=3
Length = 363
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 23 WDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTDSS 78
W Q ++ + + +P +V KQ + S I + + G + +LT + T+SS
Sbjct: 194 WSQDYTDLEVRVPVPKHVMKGKQVSVALSSGTIRVAMVEENGERVLMEGKLTHKINTESS 253
Query: 79 FWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
W+LE + + L+K G+ W S I+ +G+ +P D+ K + EE
Sbjct: 254 LWSLEPGRCVLVNLSK--VGEYWWSAIL-EGE-EPIDIDKINKERSMATVDEE 302
>sp|P20910|MYCO_STRCI Mycolysin OS=Streptomyces cacaoi GN=npr PE=1 SV=1
Length = 550
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 PVKTDSSFWTLEDDVMHITLTKRDKGQT 99
P TD ++WT DD +H+ + D G T
Sbjct: 377 PGSTDGTYWTNRDDKVHLADSDPDSGHT 404
>sp|Q8RK09|HPAB1_PSESS Effector protein hopAB1 OS=Pseudomonas syringae pv. savastanoi
GN=hopAB1 PE=3 SV=1
Length = 541
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED 84
Q +D+I +++ P + K ++ ELG + + ++ +C + S +
Sbjct: 419 QVVDDIRAALDIAPQFSQLRTISKADAESEELGFRDAADHPDNATSCLFGEELSLSNPDQ 478
Query: 85 DVMHITLTKRDKGQTWASPI------MGQGQLDPYVTDQEQKRLMLQRF 127
V+ + + DK Q ++ + M +L Y+ D+ + L QR
Sbjct: 479 QVIGLAVNPTDKPQPYSQEVNKALTFMDMKKLAQYLADKPEHPLNRQRL 527
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,925,878
Number of Sequences: 539616
Number of extensions: 2515412
Number of successful extensions: 5031
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5003
Number of HSP's gapped (non-prelim): 29
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)