RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032235
(144 letters)
>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear
distribution) C and similar proteins. Aspergillus
nidulas (An) NUDC is needed for nuclear movement. AnNUDC
is localized at the hyphal cortex, and binds NUDF at
spindle pole bodies (SPBs) and in the cytoplasm at
different stages in the cell cycle. At the SPBs it is
part of the dynein molecular motor/NUDF complex that
regulates microtubule dynamics. Mammalian(m) NUDC
associates both with the dynein complex and also with an
anti-inflammatory enzyme, platelet activating factor
acetylhydrolase I, PAF-AH(I) complex, through binding
mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC
is important for cell proliferation both in normal and
tumor tissues. Its expression is elevated in various
cell types undergoing mitosis or stimulated to
proliferate, with high expression levels observed in
leukemic cells and tumors. For a leukemic cell line,
human NUDC was shown to activate the thrombopoietin
(TPO) receptor (Mpl) by binding to its extracellular
domain, and promoting cell proliferation and
differentiation. This group also includes the human
broadly immunogenic tumor associated antigen, CML66,
which is highly expressed in a variety of solid tumors
and in leukemias. In normal tissues high expression of
CML66 is limited to testis and heart.
Length = 85
Score = 112 bits (282), Expect = 2e-33
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ W QTLDE+ + I LP SK +I KH+++G+KG P L+ EL VK D S W
Sbjct: 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTW 60
Query: 81 TLED-DVMHITLTKRDKGQTWASPI 104
TLED ++ ITL KR++G+ W S +
Sbjct: 61 TLEDGKLLEITLEKRNEGEWWPSLV 85
>gnl|CDD|218355 pfam04969, CS, CS domain. The CS and CHORD (pfam04968) are fused
into a single polypeptide chain in metazoans but are
found in separate proteins in plants; this is thought
to be indicative of an interaction between CS and
CHORD. It has been suggested that the CS domain is a
binding module for HSP90, implying that CS
domain-containing proteins are involved in recruiting
heat shock proteins to multiprotein assemblies.
Length = 78
Score = 79.2 bits (196), Expect = 1e-20
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDS 77
++W QTLDE+ I I L K +I+ + +++ IKG L+ EL P+ +
Sbjct: 3 YDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPEE 62
Query: 78 SFWTLEDDVMHITLTK 93
S W +ED + ITL K
Sbjct: 63 SSWKIEDTKVEITLKK 78
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 78.9 bits (195), Expect = 3e-20
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSF 79
W QTLDE+ I I L +V K + K + + +K G L EL P+ + S
Sbjct: 1 WYQTLDEVTITIPLK-DVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESK 59
Query: 80 WTLEDDVMHITLTKRDKGQTWAS 102
WT+ED + ITL K++ G+ W
Sbjct: 60 WTVEDRKIEITLKKKEPGEWWPR 82
>gnl|CDD|107243 cd06494, p23_NUDCD2_like, p23-like NUD (nuclear distribution)
C-like found in human NUDC domain-containing protein 2
(NUDCD2) and similar proteins. Little is known about
the function of the proteins in this subgroup.
Length = 93
Score = 69.4 bits (170), Expect = 2e-16
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTL 82
W QT+DE+ I +N+PP +K CK+ S+ I L +KG L +L V D WTL
Sbjct: 10 WYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTL 68
Query: 83 ED-DVMHITLTK--RDKGQTWAS 102
ED ++ I LTK RD G W S
Sbjct: 69 EDRKLIRIVLTKSNRDAGNCWKS 91
>gnl|CDD|107241 cd06492, p23_mNUDC_like, p23-like NUD (nuclear distribution) C-like
domain of mammalian(m) NUDC and similar proteins.
Mammalian(m) NUDC associates both with the dynein
complex and also with an anti-inflammatory enzyme,
platelet activating factor acetylhydrolase I, PAF-AH(I)
complex, through binding mNUDF, the regulatory beta
subunit of PAF-AH(I). mNUDC is important for cell
proliferation both in normal and tumor tissues. Its
expression is elevated in various cell types undergoing
mitosis or stimulated to proliferate, with high
expression levels observed in leukemic cells and tumors.
For a leukemic cell line, human NUDC was shown to
activate the thrombopoietin (TPO) receptor (Mpl) by
binding to its extracellular domain, and promoting cell
proliferation and differentiation.
Length = 87
Score = 58.9 bits (143), Expect = 1e-12
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 21 FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
+ W QTL E+ + + + + K IQ KH+++G+KG PP ++ EL VK + S
Sbjct: 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEES 60
Query: 79 FWTLED-DVMHITLTKRDKGQTWA 101
W +ED V+ + L K +K + W+
Sbjct: 61 SWLIEDGKVVTVNLEKINKMEWWS 84
>gnl|CDD|107242 cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD (nuclear
distribution) C-like domain found in human NUD (nuclear
distribution) C domain-containing protein 1, NUDCD1
(also known as CML66), and similar proteins.
NUDCD1/CML66 is a broadly immunogenic tumor associated
antigen, which is highly expressed in a variety of solid
tumors and in leukemias. In normal tissues high
expression of NUDCD1/CML66 is limited to testis and
heart.
Length = 85
Score = 54.5 bits (131), Expect = 8e-11
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ W QT +++ + I LP + + K HI + +K P L +L + +SS W
Sbjct: 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTW 60
Query: 81 TL-EDDVMHITLTKRDKGQTWA 101
+ E+ + ++L K+D+G TW
Sbjct: 61 IIKENKSLEVSLIKKDEGPTWP 82
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of
human butyrate-induced transcript 1 (hB-ind1), NUD
(nuclear distribution) C, Melusin, and NAD(P)H
cytochrome b5 (NCB5) oxidoreductase (OR).
Length = 80
Score = 46.8 bits (112), Expect = 5e-08
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK----------GNPPYLNHELTCP 72
W QT DE+ + ++LP V + +++ + + K + EL
Sbjct: 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED 59
Query: 73 VKTDSSFWTLEDDVMHITLTK 93
V + S +LE+ V+ ITL K
Sbjct: 60 VDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107244 cd06495, p23_NUDCD3_like, p23-like NUD (nuclear distribution)
C-like domain found in human NUDC domain-containing
protein 3 (NUDCD3) and similar proteins. Little is
known about the function of the proteins in this
subgroup.
Length = 102
Score = 31.4 bits (71), Expect = 0.047
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V +Q +QS I + ++ G + E T + T+
Sbjct: 7 YTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTE 66
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIM-GQGQLD 111
+S W+LE + ++L+K + W + ++ G+ ++D
Sbjct: 67 NSLWSLEPGKCVLLSLSK--CSEVWWNAVLKGEEEID 101
>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to
Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting
protein (SIP). CacyBP/SIP interacts with S100A6
(calcyclin), with some other members of the S100 family,
with tubulin, and with Siah-1 and Skp-1. The latter two
are components of the ubiquitin ligase that regulates
beta-catenin degradation. The beta-catenin gene is an
oncogene participating in tumorigenesis in many
different cancers. Overexpression of CacyBP/SIP, in part
through its effect on the expression of beta-catenin,
inhibits the proliferation, tumorigenicity, and invasion
of gastric cancer cells. CacyBP/SIP is abundant in
neurons and neuroblastoma NB2a cells. An extensive
re-organization of microtubules accompanies the
differentiation of NB2a cells. CacyBP/SIP may contribute
to NB2a cell differentiation through binding to and
increasing the oligomerization of tubulin. CacyBP/SIP is
also implicated in differentiation of erythroid cells,
rat neonatal cardiomyocytes, in mouse endometrial
events, and in thymocyte development.
Length = 92
Score = 30.3 bits (69), Expect = 0.13
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 19 TVFEWDQTLDEINIYINLPPNVHSK---QFYCKIQSKHIELGIKGNPPYLNHELT----- 70
T + WDQ+ + IYI L VH + + EL + N+ T
Sbjct: 2 TKYAWDQSDKFVKIYITL-KGVHQLPKENIQVEFTERSFELKVHDLNG-KNYRFTINRLL 59
Query: 71 CPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS 102
+ + S + ++ D + ITL K+ + + W S
Sbjct: 60 KKIDPEKSSFKVKTDRIVITLAKKKEKK-WES 90
>gnl|CDD|107226 cd06469, p23_DYX1C1_like, p23_like domain found in proteins similar
to dyslexia susceptibility 1 (DYX1) candidate 1 (C1)
protein, DYX1C1. The human gene encoding this protein is
a positional candidate gene for developmental dyslexia
(DD), it is located on 15q21.3 by the DYX1 DD
susceptibility locus (15q15-21). Independent association
studies have reported conflicting results. However,
association of short-term memory, which plays a role in
DD, with a variant within the DYX1C1 gene has been
reported. Most proteins belonging to this group contain
a C-terminal tetratricopeptide repeat (TPR) protein
binding region.
Length = 78
Score = 29.9 bits (68), Expect = 0.13
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 23 WDQTLDEINIYINLPPNVHSK-QFYCKIQSKHIELGIKGN-PPYL-NHELTCPVKTDSSF 79
W QT +++ I + L SK +C +L +K N PPYL +L P+ + S
Sbjct: 1 WSQTDEDVKISVPLKGVKTSKVDIFCS------DLYLKVNFPPYLFELDLAAPIDDEKSS 54
Query: 80 WTLEDDVMHITLTKRDKGQTW 100
+ + V+ TL K++ G W
Sbjct: 55 AKIGNGVLVFTLVKKEPG-IW 74
>gnl|CDD|241132 cd12688, RRM1_PTBP1_like, RNA recognition motif 1 in
polypyrimidine tract-binding protein 1 (PTB or hnRNP I)
and similar proteins. This subfamily corresponds to
the RRM1 of polypyrimidine tract-binding protein 1 (PTB
or hnRNP I), polypyrimidine tract-binding protein 2
(PTBP2 or nPTB), regulator of differentiation 1 (Rod1),
and similar proteins found in Metazoa. PTB is an
important negative regulator of alternative splicing in
mammalian cells and functions at several aspects of
mRNA metabolism, including mRNA localization,
stabilization, polyadenylation, and translation. PTBP2
is highly homologous to PTB and is perhaps specific to
the vertebrates. Unlike PTB, PTBP2 is enriched in the
brain and in some neural cell lines. It binds more
stably to the downstream control sequence (DCS) RNA
than PTB does but is a weaker repressor of splicing in
vitro. PTBP2 also greatly enhances the binding of two
other proteins, heterogeneous nuclear ribonucleoprotein
(hnRNP) H and KH-type splicing-regulatory protein
(KSRP), to the DCS RNA. The binding properties of PTBP2
and its reduced inhibitory activity on splicing imply
roles in controlling the assembly of other
splicing-regulatory proteins. PTBP2 also contains four
RRMs. ROD1 coding protein Rod1 is a mammalian PTB
homolog of a regulator of differentiation in the
fission yeast Schizosaccharomyces pombe, where the nrd1
gene encodes an RNA binding protein and negatively
regulates the onset of differentiation. ROD1 is
predominantly expressed in hematopoietic cells or
organs. It may play a role controlling differentiation
in mammals. All members in this family contain four RNA
recognition motifs (RRM), also known as RBD (RNA
binding domain) or RNP (ribonucleoprotein domain). .
Length = 81
Score = 27.3 bits (61), Expect = 1.1
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 30 INIYINLPPNVHSKQFYCKIQSKHIEL 56
+N Y + PN+ + Y + S H EL
Sbjct: 53 VNYYTYVTPNLRGRPVYVQY-SNHREL 78
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine
protease mycosin. Members of this family are
subtilisin-related serine proteases, found strictly in
the Actinobacteria and associated with type VII
secretion operons. The designation mycosin is used for
members from Mycobacterium [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair].
Length = 350
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 85 DVMH-ITLTKRDKGQTWASPIMGQGQLDPY--VTDQ 117
V I T + +G G +DP +T +
Sbjct: 250 QVRRRIEATADHPARGGRDDYVGYGVVDPVAALTGE 285
>gnl|CDD|183742 PRK12784, PRK12784, hypothetical protein; Provisional.
Length = 84
Score = 26.8 bits (59), Expect = 1.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 52 KHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVM 87
+ + +GI GN +N + + TD+ LEDD++
Sbjct: 44 EKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDDLL 79
>gnl|CDD|119371 cd06538, CIDE_N_FSP27, CIDE_N domain of FSP27 proteins. The CIDE-N
(cell death-inducing DFF45-like effector, N-terminal)
domain is found in the FSP27/CIDE-C protein, which has
been identified as a n adipocyte lipid droplet protein
that negatively regulates lipolysis and promotes
triglyceride accumulation. The CIDE protein family
includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C).
Based on sequence similarity with DFF40 and DFF45, CIDE
proteins were initially characterized as mitochondrial
activators of apoptosis. The CIDE-N domain of FSP27 is
sufficient to increase apoptosis in vitro when
overexpressed.
Length = 79
Score = 26.3 bits (58), Expect = 2.4
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 65 LNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASP 103
L+ + T V T+ F L D+ + + L KGQ W P
Sbjct: 44 LDEDGTG-VDTEEFFQALADNTVFMVL---GKGQKWKPP 78
>gnl|CDD|239717 cd03748, Ntn_PGA, Penicillin G acylase (PGA) is the key enzyme in
the industrial production of beta-lactam antibiotics.
PGA hydrolyzes the side chain of penicillin G and
related beta-lactam antibiotics releasing 6-amino
penicillanic acid (6-APA), a building block in the
production of semisynthetic penicillins. PGA is widely
distributed among microorganisms, including bacteria,
yeast and filamentous fungi but it's in vivo role
remains unclear.
Length = 488
Score = 27.8 bits (62), Expect = 2.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 2 AEKLAPEKRHRFLHNGQ 18
AEKL PE ++LHNG+
Sbjct: 79 AEKLNPENPSQYLHNGK 95
>gnl|CDD|221906 pfam13057, DUF3919, Protein of unknown function (DUF3919). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 251 and 262 amino
acids in length. There is a conserved YLNG sequence
motif.
Length = 228
Score = 27.3 bits (61), Expect = 2.6
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 17 GQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLN 66
G+TV + +L EI YIN PN S Y +SK+ E+ I G YLN
Sbjct: 26 GETVITDENSLKEIWSYINKIPN--SNTEYNNYKSKNSEISITGTIYYLN 73
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 27.3 bits (61), Expect = 3.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 22 EWDQTLDEINIYINLPPNV 40
+WD +D + + I LP NV
Sbjct: 126 DWDVPIDNVRVTITLPKNV 144
>gnl|CDD|219308 pfam07146, DUF1389, Protein of unknown function (DUF1389). This
family consists of several hypothetical bacterial
proteins which seem to be specific to Chlamydia
pneumoniae. Members of this family are typically around
400 residues in length. The function of this family is
unknown.
Length = 311
Score = 25.7 bits (57), Expect = 8.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 113 YVTDQEQKRLMLQRFQEEVNYHWLLFI 139
Y + ++ + EE +WLL +
Sbjct: 217 YQYSFSKDKISVLSLTEESIRNWLLLL 243
>gnl|CDD|202090 pfam02017, CIDE-N, CIDE-N domain. This domain is found in CAD
nuclease, and ICAD, the inhibitor of CAD nuclease. The
two proteins interact through this domain.
Length = 78
Score = 24.6 bits (54), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 73 VKTDSSFWTLEDDVMHITLTKRDKGQTWA 101
V T+ F TL D+ + LT GQ WA
Sbjct: 52 VDTEDYFQTLPDNTELVALT---SGQKWA 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.436
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,431,593
Number of extensions: 632002
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 20
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)