RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032235
(144 letters)
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 132 bits (332), Expect = 2e-40
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 3 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGG-REILKG 61
Query: 68 ELTCPVKTDSSFWTLEDD---VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED + +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 62 KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 121
Query: 125 QRFQEE 130
+RFQ+E
Sbjct: 122 ERFQKE 127
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transport protein; NMR {Mus musculus} SCOP:
b.15.1.4
Length = 131
Score = 108 bits (271), Expect = 2e-31
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 16 NGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTC 71
+G + + W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL
Sbjct: 3 SGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYN 62
Query: 72 PVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
VK + S W +ED V+ + L K +K + W + +++ + E +L
Sbjct: 63 EVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein
cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B*
2cr0_A
Length = 121
Score = 97.3 bits (242), Expect = 3e-27
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 1 MAEKLAPEKRHRFLHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIEL 56
+ KL P NG + + W QTL E+++ + N + K IQ +H+ +
Sbjct: 2 SSSKLKPNL-----GNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRV 56
Query: 57 GIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVT 115
G+KG P ++ EL VK + S W + D V+ + L K +K + W+ + +++
Sbjct: 57 GLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEINTKKI 116
Query: 116 DQE 118
+ E
Sbjct: 117 NPE 119
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 91.1 bits (226), Expect = 8e-25
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ WDQ L+EINI + + S ++ K I + +G ++ EL V S +W
Sbjct: 7 YTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65
Query: 81 TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
+ DV+ + +TK+ + + W S ++G +D
Sbjct: 66 VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 83.1 bits (205), Expect = 1e-21
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 15 HNGQTV--FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIK---GNPPYLNHE 68
+NG + W Q ++ + + +P +V KQ + S I + + G + +
Sbjct: 14 YNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGK 73
Query: 69 LTCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLD 111
LT + T+SS W+LE + + L+K + W + + G+ +D
Sbjct: 74 LTHKINTESSLWSLEPGKCVLVNLSKVGE-YWWNAILEGEEPID 116
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 127
Score = 65.9 bits (160), Expect = 6e-15
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 21 FEWDQTLDEINIYINLP--PNVHSKQFYCKIQSKHIELGIKG----NPPYLNHELTCPVK 74
+ WDQ+ + IYI L V ++ + +L +K + + + L P+
Sbjct: 23 YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPIS 82
Query: 75 TDSSFWTLEDDVMHITLTKRDKGQTWAS 102
+ S ++ D + I K+ + W
Sbjct: 83 VEGSSKKVKTDTVLILCRKKVENTRWDY 110
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 41.4 bits (97), Expect = 8e-06
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
++W QT ++ I + + NV + K + +K G L EL P+ +
Sbjct: 12 YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 70
Query: 78 SFWTLEDDVMHITLTKRDKGQTWAS 102
S + + + I L K + + W
Sbjct: 71 STFKVLSTKIEIKLKKPEAVR-WEK 94
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 37.5 bits (87), Expect = 2e-04
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
E+ Q +E+ + + + + + + + I+ + YL L + D
Sbjct: 5 HEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDK 63
Query: 78 SFWTLEDDVMHITLTKRDKGQTWAS 102
+ + + I L K D WAS
Sbjct: 64 CKYEVLSTKIEICLAKADIIT-WAS 87
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural
protein; NMR {Saccharomyces cerevisiae}
Length = 134
Score = 33.4 bits (76), Expect = 0.010
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 18/91 (19%)
Query: 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-------PPYLNHELTCP 72
F Q + I + I + + + +E+ I+ N P YL
Sbjct: 5 RFSITQDEEFIFLKIFIS--------NIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHE 56
Query: 73 VKTD---SSFWTLEDDVMHITLTKRDKGQTW 100
+ D ++ + +D+ +++ + K +K + +
Sbjct: 57 LIDDERSTAQYDSKDECINVKVAKLNKNEYF 87
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich;
2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 32.2 bits (73), Expect = 0.022
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIEL----GIKGNPPYLNHELTCPVKTD 76
+W D + I + SK + + G +L + +
Sbjct: 6 AKWYDRRDYVFIEFCVE---DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62
Query: 77 SSFWTLEDDVMHITLTKRDKGQTW 100
S D + L K + GQ+W
Sbjct: 63 DSKHKRTDRSILCCLRKGESGQSW 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.38
Identities = 26/182 (14%), Positives = 49/182 (26%), Gaps = 55/182 (30%)
Query: 6 APEKRHRFLHNGQTVFEWDQTLDEINIYIN-----LPPNVHS------------------ 42
A H L + D+ + Y++ LP V +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 43 -----KQFYCKIQSKHIELGIKGNPPYLNHEL-----------TCPVKTDSSFWT--LED 84
K C + IE + P ++ P S W ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 85 DVMHIT--------LTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL---MLQRFQEEVNY 133
DVM + + K+ K T + I L+ V + + L ++ + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTIS--IPSI-YLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 134 HW 135
Sbjct: 460 DS 461
Score = 29.1 bits (64), Expect = 0.68
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 72 PVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEV 131
+ ++D I L+K + S G L + T ++ M+Q+F EEV
Sbjct: 28 AFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 132 ---NYHWLL 137
NY +L+
Sbjct: 87 LRINYKFLM 95
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing
DFFA-like effector A, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 91
Score = 26.8 bits (59), Expect = 1.1
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 73 VKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQG 108
V T+ F TL D+ + L KGQ W G
Sbjct: 59 VDTEEFFQTLGDNTHFMILE---KGQKWMPSGPSSG 91
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding,
oxidoreduc electron transport; HET: HEC; 2.3A
{Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB:
1eb7_A*
Length = 323
Score = 26.9 bits (60), Expect = 2.6
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W L+D V MG QL + + + +
Sbjct: 262 SGQVWELKDAVAI----------------MGNAQLGKQLAPDDVENI 292
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision,
ammonia-oxidizing bacteria, oxidoreductase; HET: HEM;
1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Length = 308
Score = 26.9 bits (60), Expect = 2.6
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
D TLE V MG+ QL+ E ++
Sbjct: 245 DGGAATLEQAVET----------------MGRIQLNREFNKDEVSKI 275
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 193
Score = 26.5 bits (58), Expect = 2.7
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 1 MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINI---------YINLPPNVHSKQFYCKI 49
+E L+ FL+ + W D ++ ++ LP + +Y I
Sbjct: 86 TSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNI 143
>2dnf_A Doublecortin domain-containing protein 2; structural genomics,
riken structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 26.0 bits (57), Expect = 2.8
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 7 PEKRHRFLHNGQTVFEWDQTLDEINIYINLP 37
R L +T+ +WD L + I L
Sbjct: 26 INPASRLLIPRKTLNQWDHVLQMVTEKITLR 56
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC;
2.70A {Rhodobacter capsulatus}
Length = 328
Score = 26.5 bits (59), Expect = 3.4
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W L + V M QL + D + ++
Sbjct: 265 SGKVWDLREAVSV----------------MANSQLGATLDDTQVDQI 295
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron
transport; HET: HEM CIT; 2.20A {Marinobacter
hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB:
1rz5_A* 1rz6_A*
Length = 326
Score = 26.5 bits (59), Expect = 4.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
+ W+LE+ V MG QL + + E K +
Sbjct: 262 SGAVWSLEEAVAV----------------MGTAQLGTELNNDEVKSI 292
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme,
oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus
pantotrophus} PDB: 2c1u_A*
Length = 338
Score = 26.2 bits (58), Expect = 4.9
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W L + V M Q+ +TDQ+ + +
Sbjct: 276 SGVVWELAEAVKI----------------MSSAQIGTELTDQQAEDI 306
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll,
apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Length = 122
Score = 25.4 bits (55), Expect = 5.3
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 73 VKTDSSFWTLEDDVMHITLTKRDKGQTWASP 103
V ++ F LEDD + L GQ+W+
Sbjct: 84 VDSEDFFQLLEDDTCLMVLQ---SGQSWSPT 111
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45;
DFF40, DFF45, protein-protein complex, CIDE, CIDE domain
complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Length = 145
Score = 25.6 bits (55), Expect = 5.8
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 73 VKTDSSFWTLEDDVMHITLTKRDKGQTWA 101
V D F L + + L + WA
Sbjct: 115 VDDDDYFLCLPSNTKFVALA---SNEKWA 140
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A
{Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Length = 345
Score = 25.8 bits (57), Expect = 6.3
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W+L++ V MG Q ++D E + +
Sbjct: 284 SGVVWSLKEAVAV----------------MGSAQFGIKLSDDESEAI 314
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide,
oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Length = 320
Score = 25.3 bits (56), Expect = 7.3
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
D S WTLE+ V M QL +T++E K +
Sbjct: 253 DGSVWTLEEAVNT----------------MADIQLGQKLTEKETKEM 283
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll,
protein-protein complex, DNA binding protein; NMR {Mus
musculus} SCOP: d.15.2.1
Length = 100
Score = 24.5 bits (53), Expect = 8.6
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 73 VKTDSSFWTLEDDVMHITLTKRDKGQTW 100
V D F L + + L + W
Sbjct: 70 VDDDDYFLCLPSNTKFVALA---CNEKW 94
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 102
Score = 24.6 bits (53), Expect = 9.1
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 7 PEKRHRFLHNGQTVFEWDQTLDEINI 32
P + + ++ Q + + +L +
Sbjct: 48 PAEEAQIVYMEQLLTDDHCSLGSYGL 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.436
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,241,940
Number of extensions: 114926
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 29
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)